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                "label": "Alpha Tom Kodamullil",
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            "description": "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelated entities that demonstrate the network of the understanding on Alzheimer's disease and can be readily applied for text mining.",
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            "title": "Alzheimer's Disease Ontology",
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                "email": "m.a.laporte@cgiar.org",
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                    "id": "http://ceur-ws.org/Vol-1747/IT205_ICBO2016.pdf",
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            "title": "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)",
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            "description": "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).",
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            "repository": "https://github.com/EBISPOT/amphx_ontology",
            "title": "The Amphioxus Development and Anatomy Ontology",
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                "source_url": "https://raw.githubusercontent.com/obophenotype/ascomycete-phenotype-ontology/master/apo.obo"
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            "contact": {
                "email": "stacia@stanford.edu",
                "github": "srengel",
                "label": "Stacia R Engel",
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            "description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi",
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                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/20157474",
                    "title": "New mutant phenotype data curation system in the Saccharomyces Genome Database"
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            "taxon": {
                "id": "NCBITaxon:4890",
                "label": "Ascomycota"
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            "title": "Ascomycete phenotype ontology",
            "tracker": "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues"
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                "email": "hoganwr@gmail.com",
                "github": "hoganwr",
                "label": "William Hogan",
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            "description": "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.",
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                    "title": "The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation"
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            "title": "Apollo Structured Vocabulary",
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                    "seeAlso": "https://midasnetwork.us/catalog/",
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                    "user": "https://midasnetwork.us/"
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            "activity_status": "active",
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                "email": "mcarthua@mcmaster.ca",
                "github": "agmcarthur",
                "label": "Andrew G. McArthur",
                "orcid": "0000-0002-1142-3063"
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            "description": "Antibiotic resistance genes and mutations",
            "domain": "microbiology",
            "homepage": "https://github.com/arpcard/aro",
            "id": "aro",
            "layout": "ontology_detail",
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                "url": "https://creativecommons.org/licenses/by/4.0/"
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            "mailing_list": "https://mailman.mcmaster.ca/mailman/listinfo/card-l",
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            "preferredPrefix": "ARO",
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                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/31665441",
                    "title": "CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database."
                }
            ],
            "repository": "https://github.com/arpcard/aro",
            "title": "Antibiotic Resistance Ontology",
            "tracker": "https://github.com/arpcard/aro/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "rlwalls2008@gmail.com",
                "github": "ramonawalls",
                "label": "Ramona Walls",
                "orcid": "0000-0001-8815-0078"
            },
            "description": "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.",
            "domain": "organisms",
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            "id": "bco",
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            "license": {
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            "ontology_purl": "http://purl.obolibrary.org/obo/bco.owl",
            "preferredPrefix": "BCO",
            "products": [
                {
                    "id": "bco.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/bco.owl"
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            "publications": [
                {
                    "id": "https://doi.org/10.1371/journal.pone.0089606",
                    "title": "Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies"
                }
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            "repository": "https://github.com/BiodiversityOntologies/bco",
            "tags": [
                "biodiversity collections"
            ],
            "title": "Biological Collections Ontology",
            "tracker": "https://github.com/BiodiversityOntologies/bco/issues"
        },
        {
            "activity_status": "active",
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                {
                    "label": "BioPortal",
                    "title": "BioPortal Browser",
                    "url": "http://bioportal.bioontology.org/ontologies/BFO?p=classes"
                }
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            "contact": {
                "email": "phismith@buffalo.edu",
                "github": "phismith",
                "label": "Barry Smith",
                "orcid": "0000-0003-1384-116X"
            },
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            "description": "The upper level ontology upon which OBO Foundry ontologies are built.",
            "domain": "upper",
            "homepage": "http://ifomis.org/bfo/",
            "id": "bfo",
            "in_foundry_order": 1,
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "mailing_list": "https://groups.google.com/forum/#!forum/bfo-discuss",
            "ontology_purl": "http://purl.obolibrary.org/obo/bfo.owl",
            "preferredPrefix": "BFO",
            "products": [
                {
                    "id": "bfo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/bfo.owl"
                },
                {
                    "id": "bfo.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/bfo.obo"
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            "repository": "https://github.com/BFO-ontology/BFO",
            "title": "Basic Formal Ontology",
            "tracker": "https://github.com/BFO-ontology/BFO/issues",
            "usages": [
                {
                    "description": "BFO is imported by multiple OBO ontologies to standardize upper level structure",
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                    "user": "http://obofoundry.org"
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            "activity_status": "active",
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                "infallible": 1,
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                "path": "src/ontology",
                "system": "git"
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                "label": "Chris Mungall",
                "orcid": "0000-0002-6601-2165"
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            "description": "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces",
            "domain": "anatomy and development",
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            "ontology_purl": "http://purl.obolibrary.org/obo/bspo.owl",
            "preferredPrefix": "BSPO",
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                {
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                {
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            "title": "Biological Spatial Ontology",
            "tracker": "https://github.com/obophenotype/biological-spatial-ontology/issues"
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            "activity_status": "active",
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                "checkout": "git clone https://github.com/BRENDA-Enzymes/BTO.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "c.dudek@tu-braunschweig.de",
                "github": "chdudek",
                "label": "Christian-Alexander Dudek",
                "orcid": "0000-0001-9117-7909"
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            "description": "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures.",
            "domain": "anatomy and development",
            "homepage": "http://www.brenda-enzymes.org",
            "id": "bto",
            "layout": "ontology_detail",
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                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
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            "ontology_purl": "http://purl.obolibrary.org/obo/bto.owl",
            "page": "https://en.wikipedia.org/wiki/BRENDA_tissue_ontology",
            "preferredPrefix": "BTO",
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                {
                    "id": "bto.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/bto.obo"
                },
                {
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                    "title": "The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources"
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            ],
            "repository": "https://github.com/BRENDA-Enzymes/BTO",
            "title": "BRENDA tissue / enzyme source",
            "tracker": "https://github.com/BRENDA-Enzymes/BTO/issues"
        },
        {
            "activity_status": "active",
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                "method": "obo2owl",
                "notes": "moving to owl soon",
                "source_url": "http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/caro/caro.obo"
            },
            "contact": {
                "email": "haendel@ohsu.edu",
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                "label": "Melissa Haendel",
                "orcid": "0000-0001-9114-8737"
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            "description": "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species",
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            "title": "Common Anatomy Reference Ontology",
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        },
        {
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                "source_url": "http://purl.obolibrary.org/obo/cdao.owl"
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            "contact": {
                "email": "balhoff@renci.org",
                "github": "balhoff",
                "label": "Jim Balhoff",
                "orcid": "0000-0002-8688-6599"
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            "description": "a formalization of concepts and relations relevant to evolutionary comparative analysis",
            "domain": "organisms",
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                {
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                    "title": "Initial Implementation of a Comparative Data Analysis Ontology"
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            "title": "Comparative Data Analysis Ontology",
            "tracker": "https://github.com/evoinfo/cdao/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/CompositionalDietaryNutritionOntology/cdno.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "landreshdz@gmail.com",
                "github": "LilyAndres",
                "label": "Liliana Andres Hernandez",
                "orcid": "0000-0002-7696-731X"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "chebi"
                },
                {
                    "id": "envo"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "ro"
                }
            ],
            "description": "CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet.",
            "domain": "diet, metabolomics, and nutrition",
            "homepage": "https://cdno.info/",
            "id": "cdno",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/cdno.owl",
            "preferredPrefix": "CDNO",
            "products": [
                {
                    "id": "cdno.owl",
                    "name": "Compositional Dietary Nutrition Ontology main release in OWL format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cdno.owl"
                },
                {
                    "id": "cdno.obo",
                    "name": "Compositional Dietary Nutrition Ontology additional release in OBO format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cdno.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://doi.org/10.3389/fnut.2022.928837",
                    "title": "Establishing a Common Nutritional Vocabulary - From Food Production to Diet"
                }
            ],
            "repository": "https://github.com/CompositionalDietaryNutritionOntology/cdno",
            "title": "Compositional Dietary Nutrition Ontology",
            "tracker": "https://github.com/CompositionalDietaryNutritionOntology/cdno/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "CHEBI",
                    "title": "EBI CHEBI Browser",
                    "url": "http://www.ebi.ac.uk/chebi/chebiOntology.do?treeView=true&chebiId=CHEBI:24431#graphView"
                }
            ],
            "build": {
                "infallible": 1,
                "method": "obo2owl",
                "source_url": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo"
            },
            "contact": {
                "email": "amalik@ebi.ac.uk",
                "github": "amalik01",
                "label": "Adnan Malik",
                "orcid": "0000-0001-8123-5351"
            },
            "depicted_by": "https://www.ebi.ac.uk/chebi/images/ChEBI_logo.png",
            "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
            "domain": "chemistry and biochemistry",
            "homepage": "http://www.ebi.ac.uk/chebi",
            "id": "chebi",
            "in_foundry_order": 1,
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/chebi.owl",
            "page": "http://www.ebi.ac.uk/chebi/init.do?toolBarForward=userManual",
            "preferredPrefix": "CHEBI",
            "products": [
                {
                    "id": "chebi.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/chebi.owl"
                },
                {
                    "id": "chebi.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/chebi.obo"
                },
                {
                    "id": "chebi.owl.gz",
                    "ontology_purl": "http://purl.obolibrary.org/obo/chebi.owl.gz",
                    "title": "chebi, compressed owl"
                },
                {
                    "id": "chebi/chebi_lite.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo",
                    "title": "chebi_lite, no syns or xrefs"
                },
                {
                    "id": "chebi/chebi_core.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/chebi/chebi_core.obo",
                    "title": "chebi_core, no xrefs"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/26467479",
                    "title": "ChEBI in 2016: Improved services and an expanding collection of metabolites."
                }
            ],
            "repository": "https://github.com/ebi-chebi/ChEBI",
            "title": "Chemical Entities of Biological Interest",
            "tracker": "https://github.com/ebi-chebi/ChEBI/issues",
            "twitter": "chebit",
            "usages": [
                {
                    "description": "Rhea uses CHEBI to annotate reaction participants",
                    "examples": [
                        {
                            "description": "Query for all usages of CHEBI:29748 (chorismate)",
                            "url": "https://www.rhea-db.org/searchresults?q=CHEBI:29748"
                        }
                    ],
                    "user": "https://www.rhea-db.org/"
                },
                {
                    "description": "ZFIN uses CHEBI to annotate experiments",
                    "examples": [
                        {
                            "description": "A curated zebrafish experiment involving exposure to (5Z,8Z,14Z)-11,12-dihydroxyicosatrienoic acid (CHEBI:63969)",
                            "url": "http://zfin.org/action/expression/experiment?id=ZDB-EXP-190627-10"
                        }
                    ],
                    "user": "http://zfin.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "method": "owl2obo",
                "source_url": "https://raw.githubusercontent.com/semanticchemistry/semanticchemistry/master/ontology/cheminf.owl"
            },
            "contact": {
                "email": "egon.willighagen@gmail.com",
                "github": "egonw",
                "label": "Egon Willighagen",
                "orcid": "0000-0001-7542-0286"
            },
            "description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.",
            "domain": "chemistry and biochemistry",
            "homepage": "https://github.com/semanticchemistry/semanticchemistry",
            "id": "cheminf",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "http://creativecommons.org/publicdomain/zero/1.0/"
            },
            "mailing_list": "https://groups.google.com/forum/#!forum/cheminf-ontology",
            "ontology_purl": "http://purl.obolibrary.org/obo/cheminf.owl",
            "preferredPrefix": "CHEMINF",
            "products": [
                {
                    "id": "cheminf.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cheminf.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/21991315",
                    "title": "The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web"
                }
            ],
            "repository": "https://github.com/semanticchemistry/semanticchemistry",
            "title": "Chemical Information Ontology",
            "tracker": "https://github.com/semanticchemistry/semanticchemistry/issues",
            "usages": [
                {
                    "description": "ChEMBL uses CHEMINF in the RDF download",
                    "examples": [
                        {
                            "description": "The RDF is provided as SPARQL endpoint by Maastricht University.",
                            "url": "https://chemblmirror.rdf.bigcat-bioinformatics.org/"
                        }
                    ],
                    "user": "https://www.ebi.ac.uk/chembl/"
                },
                {
                    "description": "PubChem uses CHEMINF in their RDF representation",
                    "examples": [
                        {
                            "description": "Physicochemical properties are represented as classes that are typed with CHEMINF classes",
                            "url": "https://pubchem.ncbi.nlm.nih.gov/rest/rdf/descriptor/CID161282_Canonical_SMILES"
                        }
                    ],
                    "user": "https://pubchem.ncbi.nlm.nih.gov/"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "vasilevs@ohsu.edu",
                "github": "nicolevasilevsky",
                "label": "Nicole Vasilevsky",
                "orcid": "0000-0001-5208-3432"
            },
            "dependencies": [
                {
                    "id": "chebi"
                },
                {
                    "id": "go"
                },
                {
                    "id": "hp"
                },
                {
                    "id": "mp"
                },
                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "pr"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.",
            "domain": "chemistry and biochemistry",
            "homepage": "https://github.com/obophenotype/chiro",
            "id": "chiro",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "http://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/chiro.owl",
            "preferredPrefix": "CHIRO",
            "products": [
                {
                    "id": "chiro.owl",
                    "name": "CHEBI Integrated Role Ontology main release in OWL format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/chiro.owl"
                },
                {
                    "id": "chiro.obo",
                    "name": "CHEBI Integrated Role Ontology additional release in OBO format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/chiro.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://doi.org/10.26434/chemrxiv.12591221",
                    "title": "Extension of Roles in the ChEBI Ontology"
                }
            ],
            "repository": "https://github.com/obophenotype/chiro",
            "title": "CHEBI Integrated Role Ontology",
            "tracker": "https://github.com/obophenotype/chiro/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "batchelorc@rsc.org",
                "github": "batchelorc",
                "label": "Colin Batchelor",
                "orcid": "0000-0001-5985-7429"
            },
            "description": "CHMO, the chemical methods ontology, describes methods used to",
            "domain": "health",
            "homepage": "https://github.com/rsc-ontologies/rsc-cmo",
            "id": "chmo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "mailing_list": "chemistry-ontologies@googlegroups.com",
            "ontology_purl": "http://purl.obolibrary.org/obo/chmo.owl",
            "preferredPrefix": "CHMO",
            "products": [
                {
                    "id": "chmo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/chmo.owl"
                }
            ],
            "repository": "https://github.com/rsc-ontologies/rsc-cmo",
            "title": "Chemical Methods Ontology",
            "tracker": "https://github.com/rsc-ontologies/rsc-cmo/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "yongqunh@med.umich.edu",
                "github": "yongqunh",
                "label": "Yongqun Oliver He",
                "orcid": "0000-0001-9189-9661"
            },
            "description": "The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment.",
            "domain": "health",
            "homepage": "https://github.com/cido-ontology/cido",
            "id": "cido",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "mailing_list": "cido-discuss@googlegroups.com",
            "ontology_purl": "http://purl.obolibrary.org/obo/cido.owl",
            "preferredPrefix": "CIDO",
            "products": [
                {
                    "id": "cido.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cido.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/36271389",
                    "title": "A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology"
                }
            ],
            "repository": "https://github.com/cido-ontology/cido",
            "title": "Coronavirus Infectious Disease Ontology",
            "tracker": "https://github.com/cido-ontology/cido/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "frederic.bastian@unil.ch",
                "github": "fbastian",
                "label": "Frédéric Bastian",
                "orcid": "0000-0002-9415-5104"
            },
            "description": "An ontology to capture confidence information about annotations.",
            "domain": "information",
            "homepage": "https://github.com/BgeeDB/confidence-information-ontology",
            "id": "cio",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/cio.owl",
            "preferredPrefix": "CIO",
            "products": [
                {
                    "id": "cio.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cio.owl"
                },
                {
                    "id": "cio.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cio.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/25957950",
                    "title": "The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations"
                }
            ],
            "repository": "https://github.com/BgeeDB/confidence-information-ontology",
            "title": "Confidence Information Ontology",
            "tracker": "https://github.com/BgeeDB/confidence-information-ontology"
        },
        {
            "activity_status": "active",
            "canonical": "cl.owl",
            "contact": {
                "email": "addiehl@buffalo.edu",
                "github": "addiehl",
                "label": "Alexander Diehl",
                "orcid": "0000-0001-9990-8331"
            },
            "dependencies": [
                {
                    "id": "chebi"
                },
                {
                    "id": "go"
                },
                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "pr"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "depicted_by": "/images/CL-logo.jpg",
            "description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.",
            "domain": "anatomy and development",
            "homepage": "https://obophenotype.github.io/cell-ontology/",
            "id": "cl",
            "label": "Cell Ontology",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "mailing_list": "https://groups.google.com/g/cl_edit",
            "ontology_purl": "http://purl.obolibrary.org/obo/cl.owl",
            "preferredPrefix": "CL",
            "products": [
                {
                    "description": "Complete ontology, plus inter-ontology axioms, and imports modules",
                    "format": "owl-rdf/xml",
                    "id": "cl.owl",
                    "is_canonical": true,
                    "ontology_purl": "http://purl.obolibrary.org/obo/cl.owl",
                    "title": "Main CL OWL edition",
                    "uses": [
                        "uberon",
                        "chebi",
                        "go",
                        "pr",
                        "pato",
                        "ncbitaxon",
                        "ro"
                    ]
                },
                {
                    "derived_from": "cl.owl",
                    "description": "Complete ontology, plus inter-ontology axioms, and imports modules merged in",
                    "format": "obo",
                    "id": "cl.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cl.obo",
                    "title": "CL obo format edition"
                },
                {
                    "description": "Basic version, no inter-ontology axioms",
                    "format": "obo",
                    "id": "cl/cl-basic.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.obo",
                    "title": "Basic CL"
                },
                {
                    "description": "complete CL but with no imports or external axioms",
                    "id": "cl/cl-base.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.owl",
                    "title": "CL base module"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/27377652",
                    "title": "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability."
                }
            ],
            "repository": "https://github.com/obophenotype/cell-ontology",
            "tags": [
                "cells"
            ],
            "taxon": {
                "id": "NCBITaxon:33208",
                "label": "Metazoa"
            },
            "title": "Cell Ontology",
            "tracker": "https://github.com/obophenotype/cell-ontology/issues",
            "twitter": "CellOntology",
            "usages": [
                {
                    "description": "The BICCN created a high-resolution atlas of cell types in the primary motor based on single cell transcriptomics. These cell types are represented in the brain data standards ontology which anchors to cell types in the cell ontology.",
                    "examples": [
                        {
                            "description": "cell type card of a cell type linked to a PCL cell type (L2/3 IT primary motor cortex glutamatergic neuron) which is a subclass of cell types in CL (CL:4023041)",
                            "url": "https://knowledge.brain-map.org/celltypes/CCN202002013/CS202002013_193"
                        },
                        {
                            "description": "PCL cell type used in cell type cards linked directly to CL cell types",
                            "url": "https://www.ebi.ac.uk/ols/ontologies/pcl/terms?iri=http://purl.obolibrary.org/obo/PCL_0011193"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://doi.org/10.1101/2021.10.10.463703",
                            "title": "Brain Data Standards Ontology: A data-driven ontology of transcriptomically defined cell types in the primary motor cortex"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://biccn.org/"
                },
                {
                    "description": "HuBMAP develops tools to create an open, global atlas of the human body at the cellular level. The Cell Ontology is used in annotating cell types in the tools developed.",
                    "examples": [
                        {
                            "description": "ASCT+B reporter showing CL being used to annotate cell types in the heart",
                            "url": "https://hubmapconsortium.github.io/ccf-asct-reporter/vis?selectedOrgans=heart-v1.1&playground=false"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/31597973",
                            "title": "The human body at cellular resolution: the NIH Human Biomolecular Atlas Program."
                        }
                    ],
                    "type": "annotation",
                    "user": "https://hubmapconsortium.org/"
                },
                {
                    "description": "The Human Cell Atlas (HCA) is an international group of researchers using a combination of these new technologies to create cellular reference maps. The HCA use CL to annotate cells in their reference maps.",
                    "examples": [
                        {
                            "description": "HCA collection studies that are related B cell (CL:0000236) that is filtered through CL annotation",
                            "url": "https://singlecell.broadinstitute.org/single_cell?type=study&page=1&facets=cell_type%3ACL_0000236&scpbr=human-cell-atlas-main-collection"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/29206104",
                            "title": "The Human Cell Atlas"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://www.humancellatlas.org/"
                },
                {
                    "description": "The EBI single cell expression atlas is an extension to EBI expression atlas that displays gene expression in single cells. Cell types in the single cell expression atlas linked with terms from the Cell Ontology.",
                    "examples": [
                        {
                            "description": "RNA-Seq CAGE (Cap Analysis of Gene Expression) analysis of mice cells in RIKEN FANTOM5 project annotated using cell types from CL",
                            "url": "https://www.ebi.ac.uk/gxa/experiments/E-MTAB-3578/Results"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/31665515",
                            "title": "Expression Atlas update: from tissues to single cells"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://www.ebi.ac.uk/gxa/home"
                },
                {
                    "description": "The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. The ENCODE DCC uses Uberon to annotate samples",
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/25776021",
                            "title": "Ontology application and use at the ENCODE DCC"
                        }
                    ],
                    "seeAlso": "https://doi.org/10.25504/FAIRsharing.v0hbjs",
                    "type": "annotation",
                    "user": "https://www.encodeproject.org/"
                },
                {
                    "description": "FANTOM5 is using Uberon and CL to annotate samples allowing for transcriptome analyses with cell-type and tissue-level specificity.",
                    "examples": [
                        {
                            "description": "FANTOM5 samples annotated to neuron",
                            "url": "http://fantom.gsc.riken.jp/5/sstar/CL:0000540"
                        }
                    ],
                    "type": "annotation",
                    "user": "http://fantom5-collaboration.gsc.riken.jp/"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/luis-gonzalez-m/Collembola.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "lagonzalezmo@unal.edu.co",
                "github": "luis-gonzalez-m",
                "label": "Luis González-Montaña",
                "orcid": "0000-0002-9136-9932"
            },
            "dependencies": [
                {
                    "id": "ro"
                }
            ],
            "description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).",
            "domain": "anatomy and development",
            "homepage": "https://github.com/luis-gonzalez-m/Collembola",
            "id": "clao",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "http://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/clao.owl",
            "preferredPrefix": "CLAO",
            "products": [
                {
                    "id": "clao.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/clao.owl"
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                    "user": "https://www.disease-ontology.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "DO",
                    "title": "DO Browser",
                    "url": "http://www.disease-ontology.org/do"
                }
            ],
            "build": {
                "infallible": 1,
                "method": "obo2owl",
                "source_url": "https://raw.githubusercontent.com/DiseaseOntology/HumanDiseaseOntology/master/src/ontology/doid.obo"
            },
            "contact": {
                "email": "lynn.schriml@gmail.com",
                "github": "lschriml",
                "label": "Lynn Schriml",
                "orcid": "0000-0001-8910-9851"
            },
            "depicted_by": "http://www.disease-ontology.org/media/images/DO_logo.jpg",
            "description": "An ontology for describing the classification of human diseases organized by etiology.",
            "domain": "health",
            "homepage": "http://www.disease-ontology.org",
            "id": "doid",
            "in_foundry_order": 1,
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/doid.owl",
            "preferredPrefix": "DOID",
            "products": [
                {
                    "id": "doid.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/doid.owl",
                    "title": "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies."
                },
                {
                    "id": "doid.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/doid.obo",
                    "title": "Disease Ontology, OBO format. This file omits the equivalent axioms."
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/25348409",
                    "title": "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data"
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/34755882",
                    "title": "The Human Disease Ontology 2022 update"
                }
            ],
            "repository": "https://github.com/DiseaseOntology/HumanDiseaseOntology",
            "tags": [
                "disease"
            ],
            "taxon": {
                "id": "NCBITaxon:9606",
                "label": "Homo sapiens"
            },
            "title": "Human Disease Ontology",
            "tracker": "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues",
            "twitter": "diseaseontology",
            "usages": [
                {
                    "description": "Alliance of Genome Resources - MGD, RGD, SGD, FlyBase, WormBase, ZFIN use DO",
                    "examples": [
                        {
                            "description": "Human diseases annotated to over 190,000 MOD genes, alleles, disease models and human genes",
                            "url": "https://www.alliancegenome.org/search?category=disease"
                        },
                        {
                            "description": "The landing page for Coronavirus Infectious Disease",
                            "url": "https://www.alliancegenome.org/disease/DOID:0080599"
                        }
                    ],
                    "user": "https://www.alliancegenome.org"
                },
                {
                    "description": "MGI disease model annotations use DO",
                    "examples": [
                        {
                            "description": "physical disorder",
                            "url": "http://www.informatics.jax.org/disease/DOID:0080015"
                        }
                    ],
                    "user": "http://www.informatics.jax.org/disease"
                },
                {
                    "description": "Immune Epitope Database",
                    "examples": [
                        {
                            "description": "Antibody and T cell epitopes associated with human diseases",
                            "url": "https://www.iedb.org"
                        }
                    ],
                    "user": "https://www.iedb.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "FB",
                    "title": "FlyBase Browser",
                    "url": "http://flybase.org/.bin/cvreport.html?cvterm=FBcv:0000347"
                }
            ],
            "build": {
                "checkout": "git clone https://github.com/FlyBase/drosophila-phenotype-ontolog.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "cp390@cam.ac.uk",
                "github": "Clare72",
                "label": "Clare Pilgrim",
                "orcid": "0000-0002-1373-1705"
            },
            "description": "An ontology of commonly encountered and/or high level Drosophila phenotypes.",
            "domain": "phenotype",
            "homepage": "http://purl.obolibrary.org/obo/fbcv",
            "id": "dpo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/dpo.owl",
            "preferredPrefix": "FBcv",
            "products": [
                {
                    "id": "dpo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/dpo.owl"
                },
                {
                    "id": "dpo.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/dpo.obo"
                },
                {
                    "id": "dpo.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/dpo.json"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/24138933",
                    "title": "The Drosophila phenotype ontology."
                }
            ],
            "repository": "https://github.com/FlyBase/drosophila-phenotype-ontology",
            "taxon": {
                "id": "NCBITaxon:7227",
                "label": "Drosophila"
            },
            "title": "Drosophila Phenotype Ontology",
            "tracker": "https://github.com/FlyBase/drosophila-phenotype-ontology/issues",
            "usages": [
                {
                    "description": "FlyBase uses dpo for phenotype data annotation in Drosophila",
                    "examples": [
                        {
                            "description": "alleles and constructs annotated to pupal lethal in FlyBase",
                            "url": "http://flybase.org/cgi-bin/cvreport.html?rel=is_a&id=FBcv:0002030"
                        }
                    ],
                    "user": "http://flybase.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "method": "owl2obo",
                "source_url": "http://purl.obolibrary.org/obo/dron.owl"
            },
            "contact": {
                "email": "hoganwr@gmail.com",
                "github": "hoganwr",
                "label": "William Hogan",
                "orcid": "0000-0002-9881-1017"
            },
            "description": "An ontology to support comparative effectiveness researchers studying claims data.",
            "domain": "health",
            "homepage": "https://github.com/ufbmi/dron",
            "id": "dron",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/dron.owl",
            "preferredPrefix": "DRON",
            "products": [
                {
                    "id": "dron.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/dron.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://doi.org/10.1186/s13326-017-0121-5",
                    "title": "Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request"
                }
            ],
            "repository": "https://github.com/ufbmi/dron",
            "title": "The Drug Ontology",
            "tracker": "https://github.com/ufbmi/dron/issues",
            "usages": [
                {
                    "description": "DrOn is used for the classification of Drugs, in particular, based on RxNorm codes, in the PennTURBO project.",
                    "examples": [
                        {
                            "description": "From the documentation: For example, the text `500 mg Tylenol po tabs` might be mapped to http://purl.obolibrary.org/obo/DRON_00073395, with the label `Acetaminophen 500 MG Oral Tablet [Tylenol]`. DrOn knows that this is a subclass of `Acetaminophen 500 MG Oral Tablet` (through its logical axiomatisation).",
                            "url": "https://pennturbo.github.io/Turbo-Documentation/medication_text_to_terms_to_roles.html"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://github.com/PennTURBO"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "mcourtot@gmail.com",
                "github": "mcourtot",
                "label": "Melanie Courtot",
                "orcid": "0000-0002-9551-6370"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "iao"
                }
            ],
            "description": "DUO is an ontology which represent data use conditions.",
            "domain": "information",
            "homepage": "https://github.com/EBISPOT/DUO",
            "id": "duo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/duo.owl",
            "preferredPrefix": "DUO",
            "products": [
                {
                    "id": "duo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/duo.owl"
                }
            ],
            "repository": "https://github.com/EBISPOT/DUO",
            "title": "Data Use Ontology",
            "tracker": "https://github.com/EBISPOT/DUO/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/echinoderm-ontology/ecao_ontology.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "ettensohn@cmu.edu",
                "github": "ettensohn",
                "label": "Charles Ettensohn",
                "orcid": "0000-0002-3625-0955"
            },
            "dependencies": [
                {
                    "id": "cl"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).",
            "domain": "anatomy and development",
            "homepage": "https://github.com/echinoderm-ontology/ecao_ontology",
            "id": "ecao",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/ecao.owl",
            "preferredPrefix": "ECAO",
            "products": [
                {
                    "id": "ecao.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecao.owl"
                },
                {
                    "id": "ecao.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecao.obo"
                }
            ],
            "repository": "https://github.com/echinoderm-ontology/ecao_ontology",
            "title": "The Echinoderm Anatomy and Development Ontology",
            "tracker": "https://github.com/echinoderm-ontology/ecao_ontology/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "ECO",
                    "title": "ECO Browser",
                    "url": "https://www.evidenceontology.org/browse"
                }
            ],
            "contact": {
                "email": "mgiglio@som.umaryland.edu",
                "github": "mgiglio99",
                "label": "Michelle Giglio",
                "orcid": "0000-0001-7628-5565"
            },
            "depicted_by": "https://avatars1.githubusercontent.com/u/12802432",
            "description": "An ontology for experimental and other evidence statements.",
            "domain": "investigations",
            "funded_by": [
                {
                    "id": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=1458400",
                    "title": "NSF ABI-1458400"
                }
            ],
            "homepage": "https://www.evidenceontology.org",
            "id": "eco",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/eco.owl",
            "preferredPrefix": "ECO",
            "products": [
                {
                    "id": "eco.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/eco.owl"
                },
                {
                    "id": "eco.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/eco.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/34986598",
                    "preferred": true,
                    "title": "ECO: the Evidence and Conclusion Ontology, an update for 2022."
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/30407590",
                    "title": "ECO, the Evidence & Conclusion Ontology: community standard for evidence information."
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/25052702",
                    "title": "Standardized description of scientific evidence using the Evidence Ontology (ECO)"
                }
            ],
            "repository": "https://github.com/evidenceontology/evidenceontology",
            "title": "Evidence and Conclusion Ontology",
            "tracker": "https://github.com/evidenceontology/evidenceontology/issues",
            "usages": [
                {
                    "description": "ECO is used by the GO consortium for evidence on GO associations",
                    "examples": [
                        {
                            "description": "annotations to transmembrane transport",
                            "url": "http://amigo.geneontology.org/amigo/term/GO:0055085"
                        }
                    ],
                    "type": "annotation",
                    "user": "http://geneontology.org"
                },
                {
                    "description": "ECO is used by the Monarch Initiative for evidence types for disease to phenotype annotations.",
                    "examples": [
                        {
                            "description": "Parkinsonism: Characteristic neurologic anomaly resulting form degeneration of dopamine-generating cells in the substantia nigra, a region of the midbrain, characterized clinically by shaking, rigidity, slowness of movement and difficulty with walking and gait.",
                            "url": "https://monarchinitiative.org/phenotype/HP%3A0001300#disease"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/27899636",
                            "title": "The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://monarchinitiative.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "p.buttigieg@gmail.com",
                "github": "pbuttigieg",
                "label": "Pier Luigi Buttigieg",
                "orcid": "0000-0002-4366-3088"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "chebi"
                },
                {
                    "id": "envo"
                },
                {
                    "id": "go"
                },
                {
                    "id": "iao"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "pco"
                },
                {
                    "id": "po"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.",
            "domain": "environment",
            "homepage": "https://github.com/EcologicalSemantics/ecocore",
            "id": "ecocore",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/ecocore.owl",
            "preferredPrefix": "ECOCORE",
            "products": [
                {
                    "id": "ecocore.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecocore.owl"
                },
                {
                    "id": "ecocore.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecocore.obo"
                }
            ],
            "repository": "https://github.com/EcologicalSemantics/ecocore",
            "tags": [
                "ecological functions",
                "ecological interactions"
            ],
            "title": "An ontology of core ecological entities",
            "tracker": "https://github.com/EcologicalSemantics/ecocore/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "annethessen@gmail.com",
                "github": "diatomsRcool",
                "label": "Anne Thessen",
                "orcid": "0000-0002-2908-3327"
            },
            "dependencies": [
                {
                    "id": "chebi"
                },
                {
                    "id": "envo"
                },
                {
                    "id": "exo"
                },
                {
                    "id": "go"
                },
                {
                    "id": "iao"
                },
                {
                    "id": "maxo"
                },
                {
                    "id": "nbo"
                },
                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "ncit"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                },
                {
                    "id": "xco"
                }
            ],
            "depicted_by": "https://raw.githubusercontent.com/jmcmurry/closed-illustrations/master/logos/ecto-logos/ecto-logo_black-banner.png",
            "description": "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).",
            "domain": "environment",
            "homepage": "https://github.com/EnvironmentOntology/environmental-exposure-ontology",
            "id": "ecto",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/ecto.owl",
            "preferredPrefix": "ECTO",
            "products": [
                {
                    "id": "ecto.owl",
                    "name": "Environmental conditions, treatments and exposures ontology main release in OWL format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecto.owl"
                },
                {
                    "id": "ecto.obo",
                    "name": "Environmental conditions, treatments and exposures ontology additional release in OBO format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecto.obo"
                },
                {
                    "id": "ecto.json",
                    "name": "Environmental conditions, treatments and exposures ontology additional release in OBOJSon format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecto.json"
                },
                {
                    "id": "ecto/ecto-base.owl",
                    "name": "Environmental conditions, treatments and exposures ontology main release in OWL format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecto/ecto-base.owl"
                },
                {
                    "id": "ecto/ecto-base.obo",
                    "name": "Environmental conditions, treatments and exposures ontology additional release in OBO format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecto/ecto-base.obo"
                },
                {
                    "id": "ecto/ecto-base.json",
                    "name": "Environmental conditions, treatments and exposures ontology additional release in OBOJSon format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ecto/ecto-base.json"
                }
            ],
            "repository": "https://github.com/EnvironmentOntology/environmental-exposure-ontology",
            "title": "Environmental conditions, treatments and exposures ontology",
            "tracker": "https://github.com/EnvironmentOntology/environmental-exposure-ontology/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "method": "obo2owl",
                "notes": "new url soon",
                "source_url": "ftp://ftp.hgu.mrc.ac.uk/pub/MouseAtlas/Anatomy/EMAPA.obo"
            },
            "contact": {
                "email": "Terry.Hayamizu@jax.org",
                "github": "tfhayamizu",
                "label": "Terry Hayamizu",
                "orcid": "0000-0002-0956-8634"
            },
            "description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.",
            "domain": "anatomy and development",
            "homepage": "http://www.informatics.jax.org/expression.shtml",
            "id": "emapa",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/emapa.owl",
            "preferredPrefix": "EMAPA",
            "products": [
                {
                    "id": "emapa.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/emapa.owl"
                },
                {
                    "id": "emapa.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/emapa.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/9651497",
                    "title": "An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature"
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/23972281",
                    "title": "EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update"
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/26208972",
                    "title": "Mouse Anatomy Ontologies: Enhancements and Tools for Exploring and Integrating Biomedical Data"
                },
                {
                    "id": "https://doi.org/10.1016/B978-0-12-800043-4.00023-3",
                    "title": "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)"
                }
            ],
            "repository": "https://github.com/obophenotype/mouse-anatomy-ontology",
            "taxon": {
                "id": "NCBITaxon:10088",
                "label": "Mus"
            },
            "title": "Mouse Developmental Anatomy Ontology",
            "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues",
            "usages": [
                {
                    "description": "GXD",
                    "seeAlso": "https://doi.org/10.25504/FAIRsharing.q9neh8",
                    "user": "http://www.informatics.jax.org/expression.shtml"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "pier.buttigieg@awi.de",
                "github": "pbuttigieg",
                "label": "Pier Luigi Buttigieg",
                "orcid": "0000-0002-4366-3088"
            },
            "dependencies": [
                {
                    "id": "chebi"
                },
                {
                    "id": "foodon"
                },
                {
                    "id": "go"
                },
                {
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                },
                {
                    "id": "envo.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/envo.obo",
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                {
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            "description": "A application driven Epilepsy Ontology with official terms from the ILAE.",
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            "label": "Epilepsy Ontology",
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            "repository": "https://github.com/SCAI-BIO/EpilepsyOntology",
            "tags": [
                "disease"
            ],
            "title": "Epilepsy Ontology",
            "tracker": "https://github.com/SCAI-BIO/EpilepsyOntology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "annethessen@gmail.com",
                "github": "diatomsRcool",
                "label": "Anne Thessen",
                "orcid": "0000-0002-2908-3327"
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            "repository": "https://github.com/CTDbase/exposure-ontology",
            "title": "Exposure ontology",
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                "email": "vw253@cam.ac.uk",
                "github": "ValWood",
                "label": "Val Wood",
                "orcid": "0000-0001-6330-7526"
            },
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            "homepage": "https://github.com/obophenotype/fungal-anatomy-ontology/",
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            "title": "Fungal gross anatomy",
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                    "label": "VFB",
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                    "url": "http://www.virtualflybrain.org/site/stacks/index.htm?add=FBbt:00007401"
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                {
                    "label": "BioPortal",
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            "title": "Drosophila gross anatomy",
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                            "description": "Ring neuron R2 in VFB",
                            "url": "http://www.virtualflybrain.org/site/stacks/index.htm?id=FBbt_00003651"
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                        {
                            "description": "genes expressed in ring neuron R2 in VFB",
                            "url": "http://www.virtualflybrain.org/do/gene_list.html?action=geneex&id=FBbt:00003651"
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                {
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            "contact": {
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            "tracker": "https://github.com/FlyBase/flybase-controlled-vocabulary/issues",
            "usages": [
                {
                    "description": "FlyBase uses FBcv for phenotype data annotation in Drosophila",
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            "repository": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology",
            "title": "Food-Biomarker Ontology",
            "tracker": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "damion_dooley@sfu.ca",
                "github": "ddooley",
                "label": "Damion Dooley",
                "orcid": "0000-0002-8844-9165"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "chebi"
                },
                {
                    "id": "envo"
                },
                {
                    "id": "eo"
                },
                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "obi"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research",
            "domain": "diet, metabolomics, and nutrition",
            "homepage": "https://foodon.org/",
            "id": "foodon",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/foodon.owl",
            "preferredPrefix": "FOODON",
            "products": [
                {
                    "format": "owl-rdf/xml",
                    "id": "foodon.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/foodon.owl",
                    "title": "FoodOn ontology with import file references and over 9,000 food products"
                },
                {
                    "format": "owl-rdf/xml",
                    "id": "foodon_core.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/foodon_core.owl",
                    "title": "FoodOn core ontology (currently the same as foodon.owl)"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/31304272",
                    "title": "FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration"
                }
            ],
            "repository": "https://github.com/FoodOntology/foodon",
            "tags": [
                "food"
            ],
            "title": "Food Ontology",
            "tracker": "https://github.com/FoodOntology/foodon/issues/"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "meghan.balk@gmail.com",
                "github": "megbalk",
                "label": "Meghan Balk",
                "orcid": "0000-0003-2699-3066"
            },
            "dependencies": [
                {
                    "id": "bco"
                },
                {
                    "id": "bfo"
                },
                {
                    "id": "bspo"
                },
                {
                    "id": "iao"
                },
                {
                    "id": "oba"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA).",
            "domain": "phenotype",
            "homepage": "https://github.com/futres/fovt",
            "id": "fovt",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/fovt.owl",
            "preferredPrefix": "FOVT",
            "products": [
                {
                    "id": "fovt.owl",
                    "name": "FuTRES Ontology of Vertebrate Traits main release in OWL format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/fovt.owl"
                },
                {
                    "id": "fovt.obo",
                    "name": "FuTRES Ontology of Vertebrate Traits additional release in OBO format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/fovt.obo"
                },
                {
                    "id": "fovt/fovt-base.owl",
                    "name": "FuTRES Ontology of Vertebrate Traits main release in OWL format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/fovt/fovt-base.owl"
                },
                {
                    "id": "fovt/fovt-base.obo",
                    "name": "FuTRES Ontology of Vertebrate Traits additional release in OBO format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/fovt/fovt-base.obo"
                }
            ],
            "repository": "https://github.com/futres/fovt",
            "tags": [
                "vertebrate traits"
            ],
            "title": "FuTRES Ontology of Vertebrate Traits",
            "tracker": "https://github.com/futres/fovt/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "infallible": 1,
                "method": "obo2owl",
                "source_url": "https://raw.githubusercontent.com/pombase/fypo/master/release/fypo.owl"
            },
            "contact": {
                "email": "vw253@cam.ac.uk",
                "github": "ValWood",
                "label": "Val Wood",
                "orcid": "0000-0001-6330-7526"
            },
            "depicted_by": "https://github.com/pombase/website/blob/master/src/assets/FYPO_logo_tiny.png",
            "description": "FYPO is a formal ontology of phenotypes observed in fission yeast.",
            "domain": "phenotype",
            "homepage": "https://github.com/pombase/fypo",
            "id": "fypo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/fypo.owl",
            "preferredPrefix": "FYPO",
            "products": [
                {
                    "id": "fypo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/fypo.owl"
                },
                {
                    "id": "fypo.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/fypo.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/23658422",
                    "title": "FYPO: The Fission Yeast Phenotype Ontology."
                }
            ],
            "repository": "https://github.com/pombase/fypo",
            "taxon": {
                "id": "NCBITaxon:4896",
                "label": "S. pombe"
            },
            "title": "Fission Yeast Phenotype Ontology",
            "tracker": "https://github.com/pombase/fypo/issues",
            "usages": [
                {
                    "description": "Pombase uses fypo for phenotype data annotation in fission yeast",
                    "examples": [
                        {
                            "description": "genotypes annotated to abnormal mitotic cell cycle in fission yeast",
                            "url": "https://www.pombase.org/term/FYPO:0000059"
                        }
                    ],
                    "user": "https://www.pombase.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "adeans@psu.edu",
                "github": "adeans",
                "label": "Andy Deans",
                "orcid": "0000-0002-2119-4663"
            },
            "dependencies": [
                {
                    "id": "caro"
                },
                {
                    "id": "flopo"
                },
                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "obi"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "po"
                },
                {
                    "id": "poro"
                },
                {
                    "id": "ro"
                }
            ],
            "description": "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls.",
            "domain": "phenotype",
            "homepage": "https://adeans.github.io/gallont/",
            "id": "gallont",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/gallont.owl",
            "preferredPrefix": "GALLONT",
            "products": [
                {
                    "id": "gallont.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gallont.owl"
                },
                {
                    "id": "gallont.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gallont.json"
                },
                {
                    "id": "gallont.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gallont.obo"
                }
            ],
            "repository": "https://github.com/adeans/gallont",
            "title": "Plant Gall Ontology",
            "tracker": "https://github.com/adeans/gallont/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "rbca.jackson@gmail.com",
                "github": "beckyjackson",
                "label": "Rebecca Jackson",
                "orcid": "0000-0003-4871-5569"
            },
            "description": "An ontology to represent genomics cohort attributes",
            "domain": "organisms",
            "homepage": "https://github.com/IHCC-cohorts/GECKO",
            "id": "gecko",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/gecko.owl",
            "preferredPrefix": "GECKO",
            "products": [
                {
                    "id": "gecko.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gecko.owl"
                }
            ],
            "repository": "https://github.com/IHCC-cohorts/GECKO",
            "tags": [
                "cohort studies"
            ],
            "title": "Genomics Cohorts Knowledge Ontology",
            "tracker": "https://github.com/IHCC-cohorts/GECKO/issues",
            "usages": [
                {
                    "description": "IHCC uses GECKO to standardize data from various cohorts for the IHCC cohort browser",
                    "user": "https://ihccglobal.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "damion_dooley@sfu.ca",
                "github": "ddooley",
                "label": "Damion Dooley",
                "orcid": "0000-0002-8844-9165"
            },
            "dependencies": [
                {
                    "id": "chebi"
                },
                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "po"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.",
            "domain": "health",
            "homepage": "http://genepio.org/",
            "id": "genepio",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/genepio.owl",
            "page": "https://github.com/GenEpiO/genepio",
            "preferredPrefix": "GENEPIO",
            "products": [
                {
                    "homepage": "http://genepio.github.io/genepio/",
                    "id": "genepio.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/genepio.owl"
                }
            ],
            "repository": "https://github.com/GenEpiO/genepio",
            "title": "Genomic Epidemiology Ontology",
            "tracker": "https://github.com/GenEpiO/genepio/issues/"
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/monarch-initiative/GENO-ontology.git",
                "path": "src/ontology",
                "system": "git"
            },
            "contact": {
                "email": "mhb120@gmail.com",
                "github": "mbrush",
                "label": "Matthew Brush",
                "orcid": "0000-0002-1048-5019"
            },
            "description": "An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases.",
            "domain": "biological systems",
            "homepage": "https://github.com/monarch-initiative/GENO-ontology/",
            "id": "geno",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/geno.owl",
            "preferredPrefix": "GENO",
            "products": [
                {
                    "id": "geno.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/geno.owl",
                    "title": "GENO"
                }
            ],
            "repository": "https://github.com/monarch-initiative/GENO-ontology",
            "tags": [
                "genotype-to-phenotype associations"
            ],
            "title": "Genotype Ontology",
            "tracker": "https://github.com/monarch-initiative/GENO-ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "hoganwr@gmail.com",
                "github": "hoganwr",
                "label": "Bill Hogan",
                "orcid": "0000-0002-9881-1017"
            },
            "description": "An ontology of geographical entities",
            "domain": "environment",
            "homepage": "https://github.com/ufbmi/geographical-entity-ontology/wiki",
            "id": "geo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/geo.owl",
            "preferredPrefix": "GEO",
            "products": [
                {
                    "id": "geo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/geo.owl"
                }
            ],
            "repository": "https://github.com/ufbmi/geographical-entity-ontology",
            "title": "Geographical Entity Ontology",
            "tracker": "https://github.com/ufbmi/geographical-entity-ontology/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "Structure Browser",
                    "title": "GNOme Glycan Structure Browser",
                    "url": "https://gnome.glyomics.org/StructureBrowser.html?HexNAc=4&Hex=5&dHex=1&NeuAc=2"
                },
                {
                    "label": "Composition Browser",
                    "title": "GNOme Glycan Composition Browser",
                    "url": "https://gnome.glyomics.org/CompositionBrowser.html?HexNAc=4&Hex=5&dHex=1&NeuAc=2"
                }
            ],
            "build": {
                "checkout": "git clone https://github.com/glygen-glycan-data/GNOme.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "nje5@georgetown.edu",
                "github": "edwardsnj",
                "label": "Nathan Edwards",
                "orcid": "0000-0001-5168-3196"
            },
            "description": "GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). GNOme organizes these stable accessions for interative browsing, for text-based searching, and for automated reasoning with well-defined characterization levels.",
            "domain": "chemistry and biochemistry",
            "homepage": "https://gnome.glyomics.org/",
            "id": "gno",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/gno.owl",
            "preferredPrefix": "GNO",
            "products": [
                {
                    "description": "Glycan Naming and Subsumption Ontology, OWL format (primary)",
                    "id": "gno.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gno.owl"
                },
                {
                    "description": "Glycan Naming and Subsumption Ontology, OBO format (automated conversion from OWL)",
                    "id": "gno.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gno.obo"
                },
                {
                    "description": "Glycan Naming and Subsumption Ontology, JSON format (automated conversion from OWL)",
                    "id": "gno.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gno.json"
                }
            ],
            "publications": [
                {
                    "id": "https://doi.org/10.5281/zenodo.6678278",
                    "title": "GNOme - Glycan Naming and Subsumption Ontology"
                }
            ],
            "repository": "https://github.com/glygen-glycan-data/GNOme",
            "tags": [
                "glycan structure"
            ],
            "title": "Glycan Naming and Subsumption Ontology (GNOme)",
            "tracker": "https://github.com/glygen-glycan-data/GNOme/issues",
            "usages": [
                {
                    "description": "GlyGen - Computational and Informatics Resources for Glycoscience",
                    "examples": [
                        {
                            "description": "GNOme attributes and related glycans on glycan pages",
                            "url": "https://www.glygen.org/glycan/G00028MO"
                        }
                    ],
                    "user": "https://www.glygen.org/"
                },
                {
                    "description": "PRO - Protein Ontology",
                    "examples": [
                        {
                            "description": "example of PRO use of GNO terms",
                            "url": "http://purl.obolibrary.org/obo/PR_000059585"
                        }
                    ],
                    "user": "https://proconsortium.org/"
                },
                {
                    "description": "ChEBI - Chemical Entities of Biological Interest",
                    "examples": [
                        {
                            "description": "example of ChEBI use of GNO terms",
                            "url": "http://purl.obolibrary.org/obo/CHEBI_167503"
                        }
                    ],
                    "user": "https://www.ebi.ac.uk/chebi/init.do"
                }
            ]
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "AmiGO",
                    "title": "Gene Ontology AmiGO 2 Browser",
                    "url": "http://amigo.geneontology.org/amigo/term/GO:0008150#display-lineage-tab"
                }
            ],
            "contact": {
                "email": "suzia@stanford.edu",
                "github": "suzialeksander",
                "label": "Suzi Aleksander",
                "orcid": "0000-0001-6787-2901"
            },
            "dependencies": [
                {
                    "id": "cl",
                    "subset": "go/extensions/cl_import.owl"
                },
                {
                    "connects": [
                        {
                            "id": "nifstd"
                        },
                        {
                            "id": "go"
                        }
                    ],
                    "description": "Bridging axioms between nifstd and go",
                    "id": "go/extensions/go-bridge-to-nifstd.owl",
                    "publications": [
                        {
                            "id": "http://www.ncbi.nlm.nih.gov/pubmed/24093723",
                            "title": "The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments."
                        }
                    ],
                    "title": "GO bridge to NIFSTD",
                    "type": "BridgeOntology"
                },
                {
                    "id": "ncbitaxon",
                    "subset": "go/extensions/ncbitaxon_import.owl"
                },
                {
                    "id": "ro",
                    "subset": "go/extensions/ro_import.owl"
                },
                {
                    "id": "uberon",
                    "subset": "go/extensions/uberon_import.owl"
                }
            ],
            "depicted_by": "/images/go_logo.png",
            "description": "An ontology for describing the function of genes and gene products",
            "domain": "biological systems",
            "homepage": "http://geneontology.org/",
            "id": "go",
            "in_foundry_order": 1,
            "integration_server": "http://build.berkeleybop.org/view/GO",
            "label": "GO",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/go.owl",
            "preferredPrefix": "GO",
            "products": [
                {
                    "description": "The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies",
                    "id": "go.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go.owl",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO (OWL edition)"
                },
                {
                    "description": "Equivalent to go.owl, in obo format",
                    "id": "go.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go.obo",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO (OBO Format edition)"
                },
                {
                    "description": "Equivalent to go.owl, in obograph json format",
                    "id": "go.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go.json",
                    "page": "https://github.com/geneontology/obographs/",
                    "title": "GO (JSON edition)"
                },
                {
                    "description": "The main ontology plus axioms connecting to select external ontologies, with subsets of those ontologies",
                    "id": "go/extensions/go-plus.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go/extensions/go-plus.owl",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO-Plus"
                },
                {
                    "description": "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves",
                    "id": "go/go-base.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go/go-base.owl",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO Base Module"
                },
                {
                    "description": "As go-plus.owl, in obographs json format",
                    "id": "go/extensions/go-plus.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go/extensions/go-plus.json",
                    "page": "https://github.com/geneontology/obographs/",
                    "title": "GO-Plus"
                },
                {
                    "description": "Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies.",
                    "id": "go/go-basic.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go/go-basic.obo",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO-Basic, Filtered, for use with legacy tools"
                },
                {
                    "description": "As go-basic.obo, in json format",
                    "id": "go/go-basic.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go/go-basic.json",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO-Basic, Filtered, for use with legacy tools (JSON)"
                },
                {
                    "description": "Classes added to ncbitaxon for groupings such as prokaryotes",
                    "id": "go/extensions/go-taxon-groupings.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO Taxon Groupings"
                },
                {
                    "description": "Equivalent to go.owl, but released daily. Note the snapshot release is not archived.",
                    "id": "go/snapshot/go.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go/snapshot/go.owl",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO (OWL edition), daily snapshot release"
                },
                {
                    "description": "Equivalent to go.owl, but released daily. Note the snapshot release is not archived.",
                    "id": "go/snapshot/go.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/go/snapshot/go.obo",
                    "page": "http://geneontology.org/page/download-ontology",
                    "title": "GO (OBO Format edition), daily snapshot release"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/10802651",
                    "title": "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium"
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/33290552",
                    "title": "The Gene Ontology resource: enriching a GOld mine"
                }
            ],
            "repository": "https://github.com/geneontology/go-ontology",
            "tags": [
                "biology"
            ],
            "taxon": {
                "id": "NCBITaxon:1",
                "label": "All life"
            },
            "title": "Gene Ontology",
            "tracker": "https://github.com/geneontology/go-ontology/issues/",
            "twitter": "news4go",
            "usages": [
                {
                    "description": "The GO ontology is used by the GO consortium for functional annotation of genes",
                    "examples": [
                        {
                            "description": "annotations to transmembrane transport",
                            "url": "http://amigo.geneontology.org/amigo/term/GO:0055085"
                        }
                    ],
                    "type": "annotation",
                    "user": "http://geneontology.org"
                },
                {
                    "description": "Uniprot uses GO to show the function of proteins",
                    "examples": [
                        {
                            "description": "functional annotations of human Sonic hedgehog protein",
                            "url": "https://www.uniprot.org/uniprot/Q15465#function"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://www.uniprot.org"
                },
                {
                    "description": "Reactome annotates activities, pathways, and cellular localization using GO",
                    "examples": [
                        {
                            "description": "protein tyrosine kinase activity of an EGFR complex",
                            "url": "https://reactome.org/content/detail/R-HSA-177934"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://reactome.org"
                },
                {
                    "description": "The Alliance of Genome Resources uses GO for model organism gene function annotation",
                    "examples": [
                        {
                            "description": "Functional summary of C elegans nsy-1 gene",
                            "url": "https://www.alliancegenome.org/gene/WB:WBGene00003822#function---go-annotations"
                        },
                        {
                            "description": "Gene Ontology Causal Activity Models for C elegans nsy-1 gene",
                            "url": "https://www.alliancegenome.org/gene/WB:WBGene00003822#pathways"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://www.alliancegenome.org"
                },
                {
                    "description": "Rhea uses GO to describe individual biochemical reactions",
                    "examples": [
                        {
                            "description": "Glutamine scyllo-inositol transaminase reaction and associated GO term",
                            "url": "https://www.rhea-db.org/rhea/22920"
                        }
                    ],
                    "type": "mapping",
                    "user": "https://www.rhea-db.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "dwelter.ontologist@gmail.com",
                "github": "daniwelter",
                "label": "Danielle Welter",
                "orcid": "0000-0003-1058-2668"
            },
            "description": "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies.",
            "domain": "organisms",
            "homepage": "https://ebispot.github.io/hancestro/",
            "id": "hancestro",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/hancestro.owl",
            "preferredPrefix": "HANCESTRO",
            "products": [
                {
                    "description": "The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies",
                    "id": "hancestro.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hancestro.owl",
                    "title": "HANCESTRO"
                },
                {
                    "description": "Base version of HANCESTRO",
                    "id": "hancestro-base.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hancestro-base.owl",
                    "title": "HANCESTRO Base"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/29448949",
                    "title": "A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog"
                }
            ],
            "repository": "https://github.com/EBISPOT/hancestro",
            "tags": [
                "ancestry"
            ],
            "title": "Human Ancestry Ontology",
            "tracker": "https://github.com/EBISPOT/hancestro/issues",
            "usages": [
                {
                    "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds.",
                    "examples": [
                        {
                            "description": "Population category defined using ancestry informative markers (AIMs) based on genetic/genomic data",
                            "url": "https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHANCESTRO_0004&viewMode=All&siblings=false"
                        }
                    ],
                    "user": "http://www.ebi.ac.uk/efo"
                },
                {
                    "description": "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.",
                    "examples": [
                        {
                            "description": "Population category defined using ancestry informative markers (AIMs) based on genetic/genomic data",
                            "url": "https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHANCESTRO_0004&viewMode=All&siblings=false"
                        }
                    ],
                    "user": "https://genepio.org/"
                },
                {
                    "description": "FoodOn (http://foodon.org) is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world.",
                    "examples": [
                        {
                            "description": "Population category defined using ancestry informative markers (AIMs) based on genetic/genomic data",
                            "url": "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHANCESTRO_0004&viewMode=All&siblings=false"
                        }
                    ],
                    "user": "http://foodon.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/hymao/hao.git",
                "system": "git"
            },
            "contact": {
                "email": "diapriid@gmail.com",
                "github": "mjy",
                "label": "Matt Yoder",
                "orcid": "0000-0002-5640-5491"
            },
            "description": "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)",
            "domain": "anatomy and development",
            "homepage": "http://hymao.org",
            "id": "hao",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/hao.owl",
            "preferredPrefix": "HAO",
            "products": [
                {
                    "id": "hao.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hao.owl"
                },
                {
                    "id": "hao.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hao.obo"
                },
                {
                    "id": "hao/depictions.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hao/depictions.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/21209921",
                    "title": "A gross anatomy ontology for hymenoptera"
                }
            ],
            "repository": "https://github.com/hymao/hao",
            "taxon": {
                "id": "NCBITaxon:7399",
                "label": "Hymenoptera"
            },
            "title": "Hymenoptera Anatomy Ontology",
            "tracker": "https://github.com/hymao/hao/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/BgeeDB/homology-ontology.git",
                "method": "vcs",
                "path": "src/ontology",
                "system": "git"
            },
            "contact": {
                "email": "bgee@sib.swiss",
                "github": "fbastian",
                "label": "Frederic Bastian",
                "orcid": "0000-0002-9415-5104"
            },
            "description": "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.",
            "domain": "anatomy and development",
            "homepage": "https://github.com/BgeeDB/homology-ontology",
            "id": "hom",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/hom.owl",
            "preferredPrefix": "HOM",
            "products": [
                {
                    "id": "hom.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hom.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://doi.org/10.1016/j.tig.2009.12.012",
                    "title": "An ontology to clarify homology-related concepts"
                }
            ],
            "repository": "https://github.com/BgeeDB/homology-ontology",
            "title": "Homology Ontology",
            "tracker": "https://github.com/BgeeDB/homology-ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "frederic.bastian@unil.ch",
                "github": "fbastian",
                "label": "Frédéric Bastian",
                "orcid": "0000-0002-9415-5104"
            },
            "description": "Life cycle stages for Human",
            "domain": "anatomy and development",
            "homepage": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv",
            "id": "hsapdv",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/hsapdv.owl",
            "page": "https://github.com/obophenotype/developmental-stage-ontologies",
            "preferredPrefix": "HsapDv",
            "products": [
                {
                    "id": "hsapdv.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hsapdv.owl"
                },
                {
                    "id": "hsapdv.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hsapdv.obo"
                }
            ],
            "repository": "https://github.com/obophenotype/developmental-stage-ontologies",
            "title": "Human Developmental Stages",
            "tracker": "https://github.com/obophenotype/developmental-stage-ontologies/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "fernanda.dorea@sva.se",
                "github": "nandadorea",
                "label": "Fernanda Dorea",
                "orcid": "0000-0001-8638-8525"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "obi"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance.",
            "domain": "health",
            "homepage": "https://w3id.org/hso",
            "id": "hso",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/hso.owl",
            "page": "https://github.com/SVA-SE/HSO",
            "preferredPrefix": "HSO",
            "products": [
                {
                    "homepage": "https://w3id.org/hso",
                    "id": "hso.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hso.owl"
                }
            ],
            "repository": "https://github.com/SVA-SE/HSO",
            "title": "Health Surveillance Ontology",
            "tracker": "https://github.com/SVA-SE/HSO/issues/"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "aellenhicks@gmail.com",
                "github": "aellenhicks",
                "label": "Amanda Hicks",
                "orcid": "0000-0002-1795-5570"
            },
            "description": "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines",
            "domain": "health",
            "homepage": "https://github.com/aellenhicks/htn_owl",
            "id": "htn",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/htn.owl",
            "preferredPrefix": "HTN",
            "products": [
                {
                    "id": "htn.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/htn.owl",
                    "title": "HTN"
                }
            ],
            "repository": "https://github.com/aellenhicks/htn_owl",
            "title": "Hypertension Ontology",
            "tracker": "https://github.com/aellenhicks/htn_owl/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "method": "owl2obo",
                "source_url": "http://purl.obolibrary.org/obo/iao.owl"
            },
            "contact": {
                "email": "zhengj2007@gmail.com",
                "github": "zhengj2007",
                "label": "Jie Zheng",
                "orcid": "0000-0002-2999-0103"
            },
            "depicted_by": "https://avatars0.githubusercontent.com/u/13591168?v=3&s=200",
            "description": "An ontology of information entities.",
            "domain": "information",
            "homepage": "https://github.com/information-artifact-ontology/IAO/",
            "id": "iao",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/iao.owl",
            "preferredPrefix": "IAO",
            "products": [
                {
                    "id": "iao.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/iao.owl"
                },
                {
                    "id": "iao/ontology-metadata.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/iao/ontology-metadata.owl",
                    "page": "https://github.com/information-artifact-ontology/IAO/wiki/OntologyMetadata",
                    "title": "IAO ontology metadata"
                },
                {
                    "id": "iao/dev/iao.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/iao/dev/iao.owl",
                    "title": "IAO dev"
                },
                {
                    "contact": {
                        "email": "mbrochhausen@gmail.com",
                        "label": "Mathias Brochhausen"
                    },
                    "description": "An ontology based on a theory of document acts describing what people can do with documents",
                    "id": "iao/d-acts.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/iao/d-acts.owl",
                    "title": "ontology of document acts"
                }
            ],
            "repository": "https://github.com/information-artifact-ontology/IAO",
            "title": "Information Artifact Ontology",
            "tracker": "https://github.com/information-artifact-ontology/IAO/issues",
            "usages": [
                {
                    "description": "IAO is used widely by multiple OBO ontologies for information representation.",
                    "type": "owl_import",
                    "user": "http://obofoundry.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "liumeng94@sjtu.edu.cn",
                "github": "Lemon-Liu",
                "label": "Meng LIU",
                "orcid": "0000-0003-3781-6962"
            },
            "description": "ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs).",
            "domain": "microbiology",
            "homepage": "https://github.com/ontoice/ICEO",
            "id": "iceo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/iceo.owl",
            "preferredPrefix": "ICEO",
            "products": [
                {
                    "id": "iceo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/iceo.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/35058462",
                    "title": "ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements"
                }
            ],
            "repository": "https://github.com/ontoice/ICEO",
            "title": "Integrative and Conjugative Element Ontology",
            "tracker": "https://github.com/ontoice/ICEO/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "yongqunh@med.umich.edu",
                "github": "yongqunh",
                "label": "Yongqun Oliver He",
                "orcid": "0000-0001-9189-9661"
            },
            "description": "An ontology of clinical informed consents",
            "domain": "investigations",
            "homepage": "https://github.com/ICO-ontology/ICO",
            "id": "ico",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/ico.owl",
            "preferredPrefix": "ICO",
            "products": [
                {
                    "id": "ico.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ico.owl"
                }
            ],
            "repository": "https://github.com/ICO-ontology/ICO",
            "tags": [
                "informed consent"
            ],
            "title": "Informed Consent Ontology",
            "tracker": "https://github.com/ICO-ontology/ICO/issues",
            "usages": [
                {
                    "description": "tracking informed consent in the kidney precision medicine project that has over 20 institutes involved.",
                    "user": "http://kpmp.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "method": "owl2obo",
                "source_url": "http://purl.obolibrary.org/obo/ido.owl"
            },
            "contact": {
                "email": "Lindsay.Cowell@utsouthwestern.edu",
                "github": "lgcowell",
                "label": "Lindsay Cowell",
                "orcid": "0000-0003-1617-8244"
            },
            "description": "A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain.",
            "domain": "health",
            "homepage": "http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology",
            "id": "ido",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/ido.owl",
            "preferredPrefix": "IDO",
            "products": [
                {
                    "id": "ido.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ido.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/34275487",
                    "title": "The Infectious Disease Ontology in the age of COVID-19"
                }
            ],
            "repository": "https://github.com/infectious-disease-ontology/infectious-disease-ontology",
            "taxon": {
                "id": "NCBITaxon:9606",
                "label": "Homo sapiens"
            },
            "title": "Infectious Disease Ontology",
            "tracker": "https://github.com/infectious-disease-ontology/infectious-disease-ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "yongqunh@med.umich.edu",
                "github": "yongqunh",
                "label": "Yongqun Oliver He",
                "orcid": "0000-0001-9189-9661"
            },
            "description": "An ontology of interactions and interaction networks",
            "domain": "biological systems",
            "homepage": "https://github.com/INO-ontology/ino",
            "id": "ino",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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                "label": "Pierre-Alain Binz",
                "orcid": "0000-0002-0045-7698"
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                    ],
                    "type": "annotation",
                    "user": "https://www.clinicalgenome.org/"
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                {
                    "description": "Mondo is used by the Kids First Data Resource Portal for disease annotations. Note, a login is needed to access the portal and view the Mondo-curated data.",
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                    "user": "https://portal.kidsfirstdrc.org/"
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                    "type": "annotation",
                    "user": "https://www.ancestry.com/"
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                    "type": "annotation",
                    "user": "https://www.humancellatlas.org/"
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                "source_url": "https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.owl"
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                "github": "batchelorc",
                "label": "Colin Batchelor",
                "orcid": "0000-0001-5985-7429"
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            "description": "Processes at the molecular level",
            "domain": "chemistry and biochemistry",
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            "title": "Molecular Process Ontology",
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                    "label": "Monarch",
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                    "url": "http://monarchinitiative.org/phenotype/MP:0000001"
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                "github": "sbello",
                "label": "Sue Bello",
                "orcid": "0000-0003-4606-0597"
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                "github": "PaulNSchofield",
                "label": "Paul Schofield",
                "orcid": "0000-0002-5111-7263"
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            "description": "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes",
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                "label": "Mus"
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            "title": "Mouse pathology ontology",
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                "github": "mbrochhausen",
                "label": "Mathias Brochhausen",
                "orcid": "0000-0003-1834-3856"
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            "description": "An ontology of minimum information regarding potential drug-drug interaction information.",
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            "layout": "ontology_detail",
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            "preferredPrefix": "MPIO",
            "products": [
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                    "ontology_purl": "http://purl.obolibrary.org/obo/mpio.owl"
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            "title": "Minimum PDDI Information Ontology",
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                "github": "bpeters42",
                "label": "Bjoern Peters",
                "orcid": "0000-0002-8457-6693"
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            "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
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            "preferredPrefix": "MS",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/ms.owl"
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                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/23482073",
                    "title": "The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary."
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            "tags": [
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            "title": "Mass spectrometry ontology",
            "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues"
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                    "label": "BioPortal",
                    "title": "BioPortal Ontology Browser",
                    "url": "https://bioportal.bioontology.org/ontologies/NBO"
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            "build": {
                "method": "owl2obo",
                "source_url": "https://raw.githubusercontent.com/obo-behavior/behavior-ontology/master/nbo.owl"
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            "contact": {
                "email": "g.gkoutos@bham.ac.uk",
                "github": "gkoutos",
                "label": "George Gkoutos",
                "orcid": "0000-0002-2061-091X"
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            "description": "An ontology of human and animal behaviours and behavioural phenotypes",
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            "homepage": "https://github.com/obo-behavior/behavior-ontology/",
            "id": "nbo",
            "layout": "ontology_detail",
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                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/nbo.owl",
            "preferredPrefix": "NBO",
            "products": [
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                        {
                            "description": "A specific assay annotated in ENCODE using OBI:0000716 'ChiP-seq'",
                            "url": "https://www.encodeproject.org/report/?type=Experiment&accession=ENCSR012KGU&accession=ENCSR560MXA&accession=ENCSR803FKU&accession=ENCSR216YPQ&accession=ENCSR115BCB&field=%40id&field=assay_term_name&field=assay_term_id"
                        }
                    ],
                    "user": "https://www.encodeproject.org/"
                },
                {
                    "description": "The NASA GeneLab data repository hosts space biology and space-related datasets funded by multiple space agencies around the world.",
                    "examples": [
                        {
                            "description": "A specific assay annotated in NASA GeneLab using OBI:0001271 'RNA-seq assay'",
                            "url": "https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-464/"
                        }
                    ],
                    "user": "https://genelab-data.ndc.nasa.gov/genelab/projects"
                },
                {
                    "description": "The CFDE is providing a centralized metadata resource to allow search across data coordination centers from multiple Common Fund programs.",
                    "examples": [
                        {
                            "description": "OBI is used in CFDE to captures types of experiments with assay terms such as OBI:0003094 'fluorescence in-situ hybridization assay'",
                            "url": "https://app.nih-cfde.org/chaise/recordset/#1/CFDE:assay_type@sort(nid)"
                        }
                    ],
                    "user": "https://app.nih-cfde.org/"
                },
                {
                    "description": "NIF is a dynamic inventory of Web-based neuroscience resources, data, and tools accessible via any computer connected to the Internet.",
                    "examples": [
                        {
                            "description": "A specific OBI term used to autocomplete in NIF search OBI:0100026 'organism'",
                            "url": "https://neuinfo.org/data/search?q=organism&l=organism#all"
                        }
                    ],
                    "user": "http://www.neuinfo.org"
                }
            ]
        },
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            "activity_status": "active",
            "contact": {
                "email": "jmwhorton@uams.edu",
                "github": "jmwhorton",
                "label": "Justin Whorton",
                "orcid": "0009-0003-4268-6207"
            },
            "description": "An ontology built for annotation and modeling of biobank repository and biobanking administration",
            "domain": "investigations",
            "homepage": "https://github.com/biobanking/biobanking",
            "id": "obib",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            "ontology_purl": "http://purl.obolibrary.org/obo/obib.owl",
            "preferredPrefix": "OBIB",
            "products": [
                {
                    "id": "obib.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/obib.owl"
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            ],
            "repository": "https://github.com/biobanking/biobanking",
            "tags": [
                "biobanking",
                "specimens",
                "bio-repository"
            ],
            "title": "Ontology for Biobanking",
            "tracker": "https://github.com/biobanking/biobanking/issues",
            "usages": [
                {
                    "description": "TURBO ontology supporting the PennTURBO project.",
                    "examples": [
                        {
                            "description": "Blood draw time",
                            "url": "http://purl.obolibrary.org/obo/OBIB_0000079"
                        }
                    ],
                    "user": "https://github.com/PennTURBO/turbo-ontology"
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                {
                    "description": "The Minimum Information About BIobank data Sharing (MIABIS) aims to standardize data elements used to describe biobanks, research on samples and associated data. General attributes to describe biobanks, sample collections and studies at an aggregated/metadata level are defined in MIABIS Core 2.0 (Merino-Martinez et al., 2016).",
                    "user": "https://github.com/MIABIS/miabis"
                },
                {
                    "description": "The National Cancer Institute Biorepositories and Biospecimen Research Branch (BBRB) is an international leader in research and policy activities related to biospecimen collection, processing, and storage, also known as biobanking.",
                    "user": "https://biospecimens.cancer.gov/resources/vocabularies.asp"
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            ]
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            "activity_status": "active",
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                {
                    "label": "BioPortal",
                    "title": "BioPortal Ontology Browser",
                    "url": "https://bioportal.bioontology.org/ontologies/OCCO?p=classes"
                }
            ],
            "contact": {
                "email": "zhengj2007@gmail.com",
                "github": "zhengj2007",
                "label": "Jie Zheng",
                "orcid": "0000-0002-2999-0103"
            },
            "description": "An ontology representing occupations. It is designed to facilitate harmonization of existing occupation standards, such as the US Bureau of Labor Statistics Standard Occupational Classification (US SOC), the International Standard Classification of Occupations (ISCO), the UK National Statistics Standard Occupational Classification (UK SOC), and the European Skills, Competences, Qualifications and Occupations (ESCO) of the European Union.",
            "domain": "information",
            "homepage": "https://github.com/Occupation-Ontology/OccO",
            "id": "occo",
            "issue_requested": 2428,
            "layout": "ontology_detail",
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                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            ],
            "repository": "https://github.com/Occupation-Ontology/OccO",
            "title": "Occupation Ontology",
            "tracker": "https://github.com/Occupation-Ontology/OccO/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "yongqunh@med.umich.edu",
                "github": "yongqunh",
                "label": "Yongqun Oliver He",
                "orcid": "0000-0001-9189-9661"
            },
            "description": "A formal ontology of genes and genomes of biological organisms.",
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            "homepage": "https://bitbucket.org/hegroup/ogg",
            "id": "ogg",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            "ontology_purl": "http://purl.obolibrary.org/obo/ogg.owl",
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            "products": [
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                    "id": "ogg.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ogg.owl"
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            ],
            "repository": "https://bitbucket.org/hegroup/ogg",
            "title": "The Ontology of Genes and Genomes",
            "tracker": "https://bitbucket.org/hegroup/ogg/issues/"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "baeverma@jcvi.org",
                "github": "BAevermann",
                "label": "Brian Aevermann",
                "orcid": "0000-0003-1346-1327"
            },
            "depicted_by": "https://avatars2.githubusercontent.com/u/12973154?s=200&v=4",
            "description": "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities",
            "domain": "health",
            "homepage": "https://github.com/OGMS/ogms",
            "id": "ogms",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/ogms.owl"
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            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/21347182",
                    "preferred": true,
                    "title": "Toward an ontological treatment of disease and diagnosis"
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/25991121",
                    "title": "Biomarkers in the Ontology for General Medical Science"
                }
            ],
            "repository": "https://github.com/OGMS/ogms",
            "tags": [
                "medicine"
            ],
            "taxon": {
                "id": "NCBITaxon:9606",
                "label": "Homo sapiens"
            },
            "title": "Ontology for General Medical Science",
            "tracker": "https://github.com/OGMS/ogms/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "method": "owl2obo",
                "source_url": "http://purl.obolibrary.org/obo/ohd.owl"
            },
            "contact": {
                "email": "wdduncan@gmail.com",
                "github": "wdduncan",
                "label": "Bill Duncan",
                "orcid": "0000-0001-9625-1899"
            },
            "description": "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies.",
            "domain": "health",
            "homepage": "https://purl.obolibrary.org/obo/ohd/home",
            "id": "ohd",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            },
            "ontology_purl": "http://purl.obolibrary.org/obo/ohd.owl",
            "preferredPrefix": "OHD",
            "products": [
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                    "id": "ohd.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ohd.owl"
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                {
                    "id": "ohd/dev/ohd.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ohd/dev/ohd.owl",
                    "title": "OHD dev"
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                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/32819435",
                    "title": "Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology"
                }
            ],
            "repository": "https://github.com/oral-health-and-disease-ontologies/ohd-ontology",
            "title": "Oral Health and Disease Ontology",
            "tracker": "https://github.com/oral-health-and-disease-ontologies/ohd-ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "yongqunh@med.umich.edu",
                "github": "yongqunh",
                "label": "Yongqun Oliver He",
                "orcid": "0000-0001-9189-9661"
            },
            "description": "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions.",
            "domain": "organisms",
            "homepage": "https://github.com/ohmi-ontology/ohmi",
            "id": "ohmi",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            "mailing_list": "http://groups.google.com/group/ohmi-discuss",
            "ontology_purl": "http://purl.obolibrary.org/obo/ohmi.owl",
            "preferredPrefix": "OHMI",
            "products": [
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                    "ontology_purl": "http://purl.obolibrary.org/obo/ohmi.owl"
                }
            ],
            "repository": "https://github.com/ohmi-ontology/ohmi",
            "title": "Ontology of Host-Microbiome Interactions",
            "tracker": "https://github.com/ohmi-ontology/ohmi/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "edong@umich.edu",
                "github": "e4ong1031",
                "label": "Edison Ong",
                "orcid": "0000-0002-5159-414X"
            },
            "description": "OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is developed to represent manually curated HPI knowledge available in the PHIDIAS resource.",
            "domain": "biological systems",
            "homepage": "https://github.com/OHPI/ohpi",
            "id": "ohpi",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            "mailing_list": "http://groups.google.com/group/ohpi-discuss",
            "ontology_purl": "http://purl.obolibrary.org/obo/ohpi.owl",
            "preferredPrefix": "OHPI",
            "products": [
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                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/30365026",
                    "title": "Victors: a web-based knowledge base of virulence factors in human and animal pathogens"
                }
            ],
            "repository": "https://github.com/OHPI/ohpi",
            "title": "Ontology of Host Pathogen Interactions",
            "tracker": "https://github.com/OHPI/ohpi/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "huang@southalabama.edu",
                "github": "Huang-OMIT",
                "label": "Jingshan Huang",
                "orcid": "0000-0003-2408-2883"
            },
            "description": "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain",
            "domain": "chemistry and biochemistry",
            "homepage": "http://omit.cis.usouthal.edu/",
            "id": "omit",
            "in_foundry": false,
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            },
            "ontology_purl": "http://purl.obolibrary.org/obo/omit.owl",
            "page": "http://omit.cis.usouthal.edu/",
            "preferredPrefix": "OMIT",
            "products": [
                {
                    "id": "omit.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/omit.owl"
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            ],
            "repository": "https://github.com/OmniSearch/omit",
            "title": "Ontology for MIRNA Target",
            "tracker": "https://github.com/OmniSearch/omit/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "cjmungall@lbl.gov",
                "github": "cmungall",
                "label": "Chris Mungall",
                "orcid": "0000-0002-6601-2165"
            },
            "description": "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).",
            "domain": "information",
            "homepage": "https://github.com/information-artifact-ontology/ontology-metadata",
            "id": "omo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
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            "preferredPrefix": "OMO",
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                    "id": "omo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/omo.owl"
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            "repository": "https://github.com/information-artifact-ontology/ontology-metadata",
            "tags": [
                "ontology term annotation"
            ],
            "title": "OBO Metadata Ontology",
            "tracker": "https://github.com/information-artifact-ontology/ontology-metadata/issues",
            "usages": [
                {
                    "description": "OMO is imported by multiple OBO ontologies for ontology term annotations.",
                    "type": "owl_import",
                    "user": "http://obofoundry.org"
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            "activity_status": "active",
            "build": {
                "method": "obo2owl",
                "source_url": "https://raw.githubusercontent.com/microbialphenotypes/OMP-ontology-files/master/omp.obo"
            },
            "contact": {
                "email": "jimhu@tamu.edu",
                "github": "jimhu-tamu",
                "label": "James C. Hu",
                "orcid": "0000-0001-9016-2684"
            },
            "description": "An ontology of phenotypes covering microbes",
            "domain": "phenotype",
            "homepage": "http://microbialphenotypes.org",
            "id": "omp",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/omp.owl",
            "preferredPrefix": "OMP",
            "products": [
                {
                    "id": "omp.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/omp.owl"
                },
                {
                    "id": "omp.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/omp.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://doi.org/10.1186/s12866-014-0294-3",
                    "title": "An ontology for microbial phenotypes"
                }
            ],
            "repository": "https://github.com/microbialphenotypes/OMP-ontology",
            "title": "Ontology of Microbial Phenotypes",
            "tracker": "https://github.com/microbialphenotypes/OMP-ontology/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "method": "owl2obo",
                "source_url": "https://github.com/mcwdsi/OMRSE"
            },
            "contact": {
                "email": "hoganwr@gmail.com",
                "github": "hoganwr",
                "label": "Bill Hogan",
                "orcid": "0000-0002-9881-1017"
            },
            "description": "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations.",
            "domain": "health",
            "homepage": "https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview",
            "id": "omrse",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            "ontology_purl": "http://purl.obolibrary.org/obo/omrse.owl",
            "preferredPrefix": "OMRSE",
            "products": [
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                    "id": "omrse.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/omrse.owl"
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            ],
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                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/27406187",
                    "title": "The ontology of medically related social entities: recent developments"
                }
            ],
            "repository": "https://github.com/mcwdsi/OMRSE",
            "tags": [
                "social",
                "behavior"
            ],
            "taxon": {
                "id": "NCBITaxon:9606",
                "label": "Homo sapiens"
            },
            "title": "Ontology for Modeling and Representation of Social Entities",
            "tracker": "https://github.com/mcwdsi/OMRSE/issues",
            "usages": [
                {
                    "description": "OMRSE is used by the CAFÊ and TIPTOE projects",
                    "examples": [
                        {
                            "description": "The project creates and maintains the Ontology of Organizational Structures of Trauma centers and Trauma systems or OOSTT, which reuses OMRSE terms",
                            "url": "https://www.ebi.ac.uk/ols4/ontologies/oostt/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FOOSTT_00000089"
                        }
                    ],
                    "type": "owl:Ontology",
                    "user": "https://boar.uams.edu/projects/comparative-assessment-framework-for-environments-of-trauma-care"
                },
                {
                    "description": "OMRSE is used by the Intervention Setting Ontology component of the Behavior Change Intervention Ontology",
                    "examples": [
                        {
                            "description": "Several facility classes extend OMRSE's 'facility'",
                            "url": "https://www.ebi.ac.uk/ols4/ontologies/bcio/classes/http%253A%252F%252Fhumanbehaviourchange.org%252Fontology%252FBCIO_026022"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://doi.org/10.12688/wellcomeopenres.15904.1",
                            "title": "Development of an Intervention Setting Ontology for behaviour change: Specifying where interventions take place"
                        }
                    ],
                    "type": "owl:Ontology",
                    "user": "https://www.humanbehaviourchange.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "chenyangnutrition@gmail.com",
                "github": "cyang0128",
                "label": "Chen Yang",
                "orcid": "0000-0001-9202-5309"
            },
            "dependencies": [
                {
                    "id": "foodon"
                },
                {
                    "id": "obi"
                },
                {
                    "id": "ons"
                }
            ],
            "description": "An ontology to standardize research output of nutritional epidemiologic studies.",
            "domain": "diet, metabolomics, and nutrition",
            "homepage": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies",
            "id": "one",
            "label": "Ontology for Nutritional Epidemiology",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
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            "ontology_purl": "http://purl.obolibrary.org/obo/one.owl",
            "page": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies",
            "preferredPrefix": "ONE",
            "products": [
                {
                    "id": "one.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/one.owl"
                }
            ],
            "repository": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies",
            "tags": [
                "nutritional epidemiology",
                "observational studies",
                "dietary surveys"
            ],
            "title": "Ontology for Nutritional Epidemiology",
            "tracker": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "francesco.vitali@ibba.cnr.it",
                "github": "FrancescoVit",
                "label": "Francesco Vitali",
                "orcid": "0000-0001-9125-4337"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "chebi"
                },
                {
                    "id": "envo"
                },
                {
                    "id": "foodon"
                },
                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "obi"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "An ontology for description of concepts in the nutritional studies domain.",
            "domain": "diet, metabolomics, and nutrition",
            "homepage": "https://github.com/enpadasi/Ontology-for-Nutritional-Studies",
            "id": "ons",
            "label": "Ontology for Nutritional Studies",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/peco.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578",
                    "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics."
                }
            ],
            "repository": "https://github.com/Planteome/plant-experimental-conditions-ontology",
            "tags": [
                "experimental conditions"
            ],
            "title": "Plant Experimental Conditions Ontology",
            "tracker": "https://github.com/Planteome/plant-experimental-conditions-ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "alayne.cuzick@rothamsted.ac.uk",
                "github": "CuzickA",
                "label": "Alayne Cuzick",
                "orcid": "0000-0001-8941-3984"
            },
            "dependencies": [
                {
                    "id": "pato"
                }
            ],
            "description": "PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions.",
            "domain": "phenotype",
            "homepage": "https://github.com/PHI-base/phipo",
            "id": "phipo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/phipo.owl",
            "preferredPrefix": "PHIPO",
            "products": [
                {
                    "id": "phipo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/phipo.owl"
                },
                {
                    "id": "phipo.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/phipo.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/34788826",
                    "title": "PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions"
                }
            ],
            "repository": "https://github.com/PHI-base/phipo",
            "title": "Pathogen Host Interaction Phenotype Ontology",
            "tracker": "https://github.com/PHI-base/phipo/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "smr@stowers.org",
                "github": "srobb1",
                "label": "Sofia Robb",
                "orcid": "0000-0002-3528-5267"
            },
            "dependencies": [
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes.",
            "domain": "anatomy and development",
            "homepage": "https://github.com/obophenotype/planaria-ontology",
            "id": "plana",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/plana.owl",
            "preferredPrefix": "PLANA",
            "products": [
                {
                    "id": "plana.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/plana.owl"
                },
                {
                    "id": "plana.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/plana.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/34318308",
                    "title": "Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms"
                }
            ],
            "repository": "https://github.com/obophenotype/planaria-ontology",
            "title": "planaria-ontology",
            "tracker": "https://github.com/obophenotype/planaria-ontology/issues",
            "usages": [
                {
                    "description": "Planosphere's PAGE database uses PLANA to annotate gene expression locations",
                    "examples": [
                        {
                            "description": "The user can get an overview of the genes expressed in the planarian epidermis",
                            "url": "https://planosphere.stowers.org/ontology/PLANA_0000034"
                        }
                    ],
                    "user": "https://planosphere.stowers.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "smr@stowers.org",
                "github": "srobb1",
                "label": "Sofia Robb",
                "orcid": "0000-0002-3528-5267"
            },
            "dependencies": [
                {
                    "id": "go"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "plana"
                },
                {
                    "id": "ro"
                }
            ],
            "description": "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.",
            "domain": "phenotype",
            "homepage": "https://github.com/obophenotype/planarian-phenotype-ontology",
            "id": "planp",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/planp.owl",
            "preferredPrefix": "PLANP",
            "products": [
                {
                    "id": "planp.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/planp.owl"
                },
                {
                    "id": "planp.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/planp.obo"
                }
            ],
            "repository": "https://github.com/obophenotype/planarian-phenotype-ontology",
            "title": "Planarian Phenotype Ontology",
            "tracker": "https://github.com/obophenotype/planarian-phenotype-ontology/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "Planteome",
                    "title": "Planteome browser",
                    "url": "http://browser.planteome.org/amigo"
                }
            ],
            "contact": {
                "email": "jaiswalp@science.oregonstate.edu",
                "github": "jaiswalp",
                "label": "Pankaj Jaiswal",
                "orcid": "0000-0002-1005-8383"
            },
            "depicted_by": "http://planteome.org/sites/default/files/garland_logo.PNG",
            "description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.",
            "domain": "anatomy and development",
            "homepage": "http://browser.planteome.org/amigo",
            "id": "po",
            "in_foundry_order": 1,
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            },
            "ontology_purl": "http://purl.obolibrary.org/obo/po.owl",
            "page": "https://github.com/Planteome/plant-ontology",
            "preferredPrefix": "PO",
            "products": [
                {
                    "id": "po.owl",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/po.obo"
                }
            ],
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                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/23220694",
                    "title": "The plant ontology as a tool for comparative plant anatomy and genomic analyses."
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578",
                    "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics."
                }
            ],
            "repository": "https://github.com/Planteome/plant-ontology",
            "taxon": {
                "id": "NCBITaxon:33090",
                "label": "Viridiplantae"
            },
            "title": "Plant Ontology",
            "tracker": "https://github.com/Planteome/plant-ontology/issues",
            "twitter": "planteome",
            "usages": [
                {
                    "description": "Planteome uses PO to describe location of tissue expression for genes in viridiplantae",
                    "examples": [
                        {
                            "description": "Genes and proteins annotate to leaf",
                            "url": "http://browser.planteome.org/amigo/term/PO:0025034"
                        }
                    ],
                    "user": "http://planteome.org/"
                },
                {
                    "description": "Maize CELL genomics DB uses PO to annotate images",
                    "examples": [
                        {
                            "description": "LhG4 Promoter Drivers",
                            "url": "http://maize.jcvi.org/cellgenomics/geneDB_list.php?filter=3"
                        }
                    ],
                    "user": "http://maize.jcvi.org/"
                },
                {
                    "description": "MaizeGDB uses PO for annotation of genes",
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                        {
                            "description": "Introduced in gene model set 5b in assembly version RefGen_v2.",
                            "url": "http://maizegdb.org/gene_center/gene/GRMZM5G863962"
                        }
                    ],
                    "user": "http://maizegdb.org/"
                },
                {
                    "description": "Gramene uses PO for the annotation of plant genes",
                    "examples": [
                        {
                            "description": "Gramene annotations to leaf from Arabidopsis",
                            "url": "http://archive.gramene.org/db/ontology/search?id=PO:0025034"
                        }
                    ],
                    "user": "http://gramene.org/"
                }
            ]
        },
        {
            "activity_status": "active",
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                "email": "robert.thacker@stonybrook.edu",
                "github": "bobthacker",
                "label": "Bob Thacker",
                "orcid": "0000-0002-9654-0073"
            },
            "dependencies": [
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                }
            ],
            "description": "An ontology covering the anatomy of the taxon Porifera (sponges)",
            "domain": "anatomy and development",
            "homepage": "https://github.com/obophenotype/porifera-ontology",
            "id": "poro",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/poro.owl",
            "preferredPrefix": "PORO",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/poro.owl"
                },
                {
                    "id": "poro.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/poro.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/25276334",
                    "title": "The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology"
                }
            ],
            "repository": "https://github.com/obophenotype/porifera-ontology",
            "taxon": {
                "id": "NCBITaxon:6040",
                "label": "Porifera"
            },
            "title": "Porifera Ontology",
            "tracker": "https://github.com/obophenotype/porifera-ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "rlwalls2008@gmail.com",
                "github": "ramonawalls",
                "label": "Ramona Walls",
                "orcid": "0000-0001-8815-0078"
            },
            "description": "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.",
            "domain": "phenotype",
            "homepage": "https://github.com/PlantPhenoOntology/PPO",
            "id": "ppo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            },
            "mailing_list": "ppo-discuss@googlegroups.com",
            "ontology_purl": "http://purl.obolibrary.org/obo/ppo.owl",
            "preferredPrefix": "PPO",
            "products": [
                {
                    "id": "ppo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/ppo.owl"
                }
            ],
            "repository": "https://github.com/PlantPhenoOntology/PPO",
            "tags": [
                "plant phenotypes"
            ],
            "taxon": {
                "id": "NCBITaxon:33090",
                "label": "Viridiplantae"
            },
            "title": "Plant Phenology Ontology",
            "tracker": "https://github.com/PlantPhenoOntology/PPO/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "BioPortal",
                    "title": "BioPortal Browser",
                    "url": "http://bioportal.bioontology.org/ontologies/PR?p=classes&conceptid=http://purl.obolibrary.org/obo/PR_000000001"
                },
                {
                    "label": "PRO",
                    "title": "PRO Home",
                    "url": "http://proconsortium.org"
                }
            ],
            "build": {
                "infallible": 0,
                "method": "obo2owl",
                "oort_args": "--no-reasoner",
                "source_url": "https://proconsortium.org/download/current/pro_nonreasoned.obo"
            },
            "contact": {
                "email": "dan5@georgetown.edu",
                "github": "nataled",
                "label": "Darren Natale",
                "orcid": "0000-0001-5809-9523"
            },
            "depicted_by": "https://raw.githubusercontent.com/PROconsortium/logo/master/PROlogo_small.png",
            "description": "An ontological representation of protein-related entities",
            "documentation": "https://proconsortium.org/download/current/pro_readme.txt",
            "domain": "chemistry and biochemistry",
            "homepage": "http://proconsortium.org",
            "id": "pr",
            "in_foundry_order": 1,
            "layout": "ontology_detail",
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                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/pr.owl",
            "preferredPrefix": "PR",
            "products": [
                {
                    "description": "PRO after reasoning has been applied, OWL format.",
                    "id": "pr.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/pr.owl",
                    "title": "pro_reasoned.owl"
                },
                {
                    "description": "PRO after reasoning has been applied, OBO format.",
                    "id": "pr.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/pr.obo",
                    "title": "pro_reasoned.obo"
                }
            ],
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                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/27899649",
                    "title": "Protein Ontology (PRO): enhancing and scaling up the representation of protein entities"
                }
            ],
            "repository": "https://github.com/PROconsortium/PRoteinOntology",
            "tags": [
                "proteins"
            ],
            "title": "PRotein Ontology (PRO)",
            "tracker": "https://github.com/PROconsortium/PRoteinOntology/issues",
            "usages": [
                {
                    "description": "Colorado Richly Annotated Full-Text (CRAFT) Corpus; PRO is used for entity tagging and annotation",
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                            "url": "https://github.com/UCDenver-ccp/CRAFT/releases/tag/v4.0.1"
                        }
                    ],
                    "user": "https://github.com/UCDenver-ccp/CRAFT"
                },
                {
                    "description": "Cell Ontology is a structured controlled vocabulary for cell types in animals; PRO is used for cell type definitions",
                    "examples": [
                        {
                            "description": "A B cell that is CD19-positive (uses the PRO term for non-species-specific CD19 molecule, PR:000001002)",
                            "url": "http://purl.obolibrary.org/obo/CL_0001201"
                        }
                    ],
                    "user": "http://www.obofoundry.org/ontology/cl.html"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "wes_schafer@merck.com",
                "github": "schaferw",
                "label": "Wes Schafer",
                "orcid": "0000-0002-8786-1756"
            },
            "dependencies": [
                {
                    "id": "chebi"
                },
                {
                    "id": "cheminf"
                },
                {
                    "id": "obi"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "sbo"
                }
            ],
            "description": "PROCO covers process chemistry, the chemical field concerned with scaling up laboratory syntheses to commercially viable processes.",
            "domain": "chemistry and biochemistry",
            "homepage": "https://github.com/proco-ontology/PROCO",
            "id": "proco",
            "layout": "ontology_detail",
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                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/proco.owl",
            "preferredPrefix": "PROCO",
            "products": [
                {
                    "id": "proco.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/proco.owl"
                }
            ],
            "repository": "https://github.com/proco-ontology/PROCO",
            "title": "Process Chemistry Ontology",
            "tracker": "https://github.com/proco-ontology/PROCO/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "https://github.com/Display-Lab/psdo.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "zachll@umich.edu",
                "github": "zachll",
                "label": "Zach Landis-Lewis",
                "orcid": "0000-0002-9117-9338"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "iao"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "stato"
                }
            ],
            "description": "Ontology to reproducibly study visualizations of clinical performance",
            "domain": "information",
            "homepage": "https://github.com/Display-Lab/psdo",
            "id": "psdo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/psdo.owl",
            "preferredPrefix": "PSDO",
            "products": [
                {
                    "id": "psdo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/psdo.owl"
                }
            ],
            "repository": "https://github.com/Display-Lab/psdo",
            "tags": [
                "learning systems"
            ],
            "title": "Performance Summary Display Ontology",
            "tracker": "https://github.com/Display-Lab/psdo/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "cooperl@oregonstate.edu",
                "github": "cooperl09",
                "label": "Laurel Cooper",
                "orcid": "0000-0002-6379-8932"
            },
            "dependencies": [
                {
                    "id": "ro"
                }
            ],
            "description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.",
            "domain": "agriculture",
            "homepage": "https://github.com/Planteome/plant-stress-ontology",
            "id": "pso",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/pso.owl",
            "preferredPrefix": "PSO",
            "products": [
                {
                    "id": "pso.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/pso.owl"
                },
                {
                    "id": "pso.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/pso.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578",
                    "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics."
                }
            ],
            "repository": "https://github.com/Planteome/plant-stress-ontology",
            "tags": [
                "plant disease",
                "abiotic stress"
            ],
            "title": "Plant Stress Ontology",
            "tracker": "https://github.com/Planteome/plant-stress-ontology/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "RGD",
                    "title": "RGD Ontology Browser",
                    "url": "http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=PW:0000001"
                }
            ],
            "build": {
                "method": "obo2owl",
                "source_url": "https://download.rgd.mcw.edu/ontology/pathway/pathway.obo"
            },
            "contact": {
                "email": "gthayman@mcw.edu",
                "github": "gthayman",
                "label": "G. Thomas Hayman",
                "orcid": "0000-0002-9553-7227"
            },
            "depicted_by": "http://rgd.mcw.edu/common/images/rgd_LOGO_blue_rgd.gif",
            "description": "A controlled vocabulary for annotating gene products to pathways.",
            "domain": "biological systems",
            "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
            "id": "pw",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/pw.obo"
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            ],
            "publications": [
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                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/21478484",
                    "title": "The Rat Genome Database pathway portal."
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/24499703",
                    "title": "The pathway ontology - updates and applications."
                }
            ],
            "repository": "https://github.com/rat-genome-database/PW-Pathway-Ontology",
            "tags": [
                "biological process"
            ],
            "title": "Pathway ontology",
            "tracker": "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "daniel.c.berrios@nasa.gov",
                "github": "DanBerrios",
                "label": "Daniel C. Berrios",
                "orcid": "0000-0003-4312-9552"
            },
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                "id": "NCBITaxon:9606",
                "label": "Homo sapiens"
            },
            "title": "Symptom Ontology",
            "tracker": "https://github.com/DiseaseOntology/SymptomOntology/issues",
            "usages": [
                {
                    "description": "Symptoms of human diseases in the DO",
                    "examples": [
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                    ],
                    "user": "http://www.disease-ontology.org"
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            "activity_status": "active",
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                "email": "allyson.lister@oerc.ox.ac.uk",
                "github": "allysonlister",
                "label": "Allyson Lister",
                "orcid": "0000-0002-7702-4495"
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            "description": "A terminology for the skills necessary to make data FAIR and to keep it FAIR.",
            "domain": "information",
            "homepage": "https://github.com/terms4fairskills/FAIRterminology",
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            "ontology_purl": "http://purl.obolibrary.org/obo/t4fs.owl",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/t4fs.obo"
                },
                {
                    "id": "t4fs.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/t4fs.json"
                },
                {
                    "id": "t4fs-community.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/t4fs-community.owl",
                    "title": "This community view of T4FS makes the ontology available in OWL without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy."
                },
                {
                    "id": "t4fs-community.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/t4fs-community.obo",
                    "title": "This community view of T4FS makes the ontology available in OBO format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy."
                },
                {
                    "id": "t4fs-community.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/t4fs-community.json",
                    "title": "This community view of T4FS makes the ontology available in JSON format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy."
                }
            ],
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                {
                    "id": "https://doi.org/10.5281/zenodo.4705219",
                    "title": "EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report"
                }
            ],
            "pull_request_added": 2140,
            "repository": "https://github.com/terms4fairskills/FAIRterminology",
            "title": "terms4FAIRskills",
            "tracker": "https://github.com/terms4fairskills/FAIRterminology/issues",
            "usages": [
                {
                    "description": "Semaphora integrates terms4FAIRskills, allowing users to annotate training materials with the ontology.",
                    "user": "http://t4fs.esciencedatafactory.com/"
                },
                {
                    "description": "FAIRassist is designed to offer personalised guidance to all stakeholders to enable the discovery of standards and repositories in FAIRsharing, which should be used to make data FAIR, as well as to signpost FAIR assessment resources.",
                    "user": "https://fairassist.org"
                },
                {
                    "description": "FAIRsFAIR Competence Centre (project wp6) will provide a platform for training materials resulting from project training activities, annot",
                    "user": "https://www.fairsfair.eu/"
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            ]
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            "activity_status": "active",
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                "email": "balhoff@renci.org",
                "github": "balhoff",
                "label": "Jim Balhoff",
                "orcid": "0000-0002-8688-6599"
            },
            "description": "A vocabulary of taxonomic ranks (species, family, phylum, etc)",
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            "homepage": "https://github.com/phenoscape/taxrank",
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                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
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            "ontology_purl": "http://purl.obolibrary.org/obo/taxrank.owl",
            "preferredPrefix": "TAXRANK",
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                {
                    "id": "taxrank.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/taxrank.owl"
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                {
                    "id": "taxrank.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/taxrank.obo"
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            "publications": [
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                    "id": "https://doi.org/10.1186/2041-1480-4-34",
                    "title": "The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes"
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            ],
            "repository": "https://github.com/phenoscape/taxrank",
            "tags": [
                "taxonomy"
            ],
            "title": "Taxonomic rank vocabulary",
            "tracker": "https://github.com/phenoscape/taxrank/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "Planteome",
                    "title": "Planteome browser",
                    "url": "http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab"
                }
            ],
            "contact": {
                "email": "jaiswalp@science.oregonstate.edu",
                "github": "jaiswalp",
                "label": "Pankaj Jaiswal",
                "orcid": "0000-0002-1005-8383"
            },
            "depicted_by": "http://planteome.org/sites/default/files/garland_logo.PNG",
            "description": "A controlled vocabulary to describe phenotypic traits in plants.",
            "domain": "phenotype",
            "homepage": "http://browser.planteome.org/amigo",
            "id": "to",
            "layout": "ontology_detail",
            "license": {
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                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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            "ontology_purl": "http://purl.obolibrary.org/obo/to.owl",
            "page": "http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/to.obo"
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            ],
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                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578",
                    "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics."
                }
            ],
            "repository": "https://github.com/Planteome/plant-trait-ontology",
            "taxon": {
                "id": "NCBITaxon:33090",
                "label": "Viridiplantae"
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            "title": "Plant Trait Ontology",
            "tracker": "https://github.com/Planteome/plant-trait-ontology/issues",
            "usages": [
                {
                    "description": "Planteome uses TO to describe traits for genes and germplasm",
                    "examples": [
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                            "description": "Genes and proteins annotated to submergence tolerance, including SUB1",
                            "url": "http://browser.planteome.org/amigo/term/TO:0000286"
                        }
                    ],
                    "user": "http://planteome.org/"
                },
                {
                    "description": "Gramene uses PO for the annotation of plant genes and QTLs",
                    "examples": [
                        {
                            "description": "Gramene annotations to submergence tolerance",
                            "url": "http://archive.gramene.org/db/ontology/search?id=TO:0000286"
                        }
                    ],
                    "user": "http://gramene.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
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                "method": "obo2owl",
                "source_url": "https://raw.githubusercontent.com/DiseaseOntology/PathogenTransmissionOntology/master/src/ontology/trans.obo"
            },
            "contact": {
                "email": "lynn.schriml@gmail.com",
                "github": "lschriml",
                "label": "Lynn Schriml",
                "orcid": "0000-0001-8910-9851"
            },
            "description": "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host.",
            "domain": "health",
            "homepage": "https://github.com/DiseaseOntology/PathogenTransmissionOntology",
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            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/trans.owl",
            "preferredPrefix": "TRANS",
            "products": [
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                    "ontology_purl": "http://purl.obolibrary.org/obo/trans.owl"
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                {
                    "id": "trans.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/trans.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/19850722",
                    "title": "GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database"
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/34755882",
                    "title": "The Human Disease Ontology 2022 update"
                }
            ],
            "repository": "https://github.com/DiseaseOntology/PathogenTransmissionOntology",
            "tags": [
                "disease"
            ],
            "title": "Pathogen Transmission Ontology",
            "tracker": "https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues",
            "usages": [
                {
                    "description": "Methods of trnasmission of human diseases in the DO",
                    "examples": [
                        {
                            "description": "methods of transmission of human diseases",
                            "url": "http://www.disease-ontology.org/?id=DOID:12365"
                        }
                    ],
                    "user": "http://www.disease-ontology.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "balhoff@renci.org",
                "github": "balhoff",
                "label": "Jim Balhoff",
                "orcid": "0000-0002-8688-6599"
            },
            "description": "An ontology covering the taxonomy of teleosts (bony fish)",
            "domain": "organisms",
            "homepage": "https://github.com/phenoscape/teleost-taxonomy-ontology",
            "id": "tto",
            "layout": "ontology_detail",
            "license": {
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                "url": "http://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/tto.owl",
            "preferredPrefix": "TTO",
            "products": [
                {
                    "id": "tto.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/tto.obo"
                },
                {
                    "id": "tto.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/tto.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://doi.org/10.1038/npre.2010.4629.1",
                    "title": "The Teleost Taxonomy Ontology"
                }
            ],
            "repository": "https://github.com/phenoscape/teleost-taxonomy-ontology",
            "tags": [
                "taxonomy"
            ],
            "taxon": {
                "id": "NCBITaxon:32443",
                "label": "Teleostei"
            },
            "title": "Teleost taxonomy ontology",
            "tracker": "https://github.com/phenoscape/teleost-taxonomy-ontology/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "BioPortal",
                    "title": "BioPortal Browser",
                    "url": "http://bioportal.bioontology.org/ontologies/TXPO?p=classes"
                },
                {
                    "label": "TOXPILOT",
                    "title": "TOXPILOT",
                    "url": "https://toxpilot.nibiohn.go.jp/"
                }
            ],
            "contact": {
                "email": "yuki.yamagata@riken.jp",
                "github": "yuki-yamagata",
                "label": "Yuki Yamagata",
                "orcid": "0000-0002-9673-1283"
            },
            "description": "TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.",
            "domain": "chemistry and biochemistry",
            "homepage": "https://toxpilot.nibiohn.go.jp/",
            "id": "txpo",
            "layout": "ontology_detail",
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            "ontology_purl": "http://purl.obolibrary.org/obo/txpo.owl",
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                    "title": "Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management"
                }
            ],
            "repository": "https://github.com/txpo-ontology/TXPO",
            "tags": [
                "toxicity"
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            "title": "Toxic Process Ontology",
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                    "label": "RGD",
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                    "url": "http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=UBERON:0001062"
                },
                {
                    "label": "AmiGO (SUBSET)",
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                    "url": "http://amigo.geneontology.org/amigo/term/UBERON:0001062#display-lineage-tab"
                },
                {
                    "label": "Bgee (gene expression)",
                    "title": "Bgee gene expression queries",
                    "url": "http://bgee.org/?page=gene"
                },
                {
                    "label": "FANTOM5",
                    "title": "FANTOM5 Data Portal",
                    "url": "http://fantom.gsc.riken.jp/5/sstar/UBERON:0001890"
                },
                {
                    "label": "KnowledgeSpace",
                    "title": "INCF KnowledgeSpace Portal",
                    "url": "https://knowledge-space.org/index.php/pages/view/UBERON:0000061"
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            ],
            "build": {
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                "email_cc": "cjmungall@lbl.gov",
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                "system": "git"
            },
            "canonical": "uberon.owl",
            "contact": {
                "email": "cjmungall@lbl.gov",
                "github": "cmungall",
                "label": "Chris Mungall",
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            "dependencies": [
                {
                    "id": "bfo"
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                {
                    "id": "bspo"
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                {
                    "id": "chebi"
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                {
                    "id": "cl"
                },
                {
                    "id": "envo"
                },
                {
                    "id": "go"
                },
                {
                    "id": "nbo"
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                {
                    "id": "ncbitaxon"
                },
                {
                    "id": "omo"
                },
                {
                    "id": "pato"
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                {
                    "id": "pr"
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                {
                    "id": "ro"
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            "depicted_by": "https://raw.githubusercontent.com/jmcmurry/closed-illustrations/master/logos/uberon-logos/uberon_logo_black-banner.png",
            "description": "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies",
            "domain": "anatomy and development",
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                {
                    "id": "https://taggs.hhs.gov/Detail/AwardDetail?arg_AwardNum=R24OD011883&arg_ProgOfficeCode=205",
                    "title": "NIH R24-OD011883"
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                {
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                    "title": "NIH R01-HG004838"
                },
                {
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                    "title": "NIH P41-HG002273"
                },
                {
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                    "title": "NSF DEB-0956049"
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            ],
            "homepage": "http://uberon.org",
            "id": "uberon",
            "label": "Uberon",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "mailing_list": "https://lists.sourceforge.net/lists/listinfo/obo-anatomy",
            "ontology_purl": "http://purl.obolibrary.org/obo/uberon.owl",
            "page": "http://en.wikipedia.org/wiki/Uberon",
            "preferredPrefix": "UBERON",
            "products": [
                {
                    "description": "core ontology",
                    "id": "uberon.owl",
                    "is_canonical": true,
                    "ontology_purl": "http://purl.obolibrary.org/obo/uberon.owl",
                    "title": "Uberon",
                    "type": "owl:Ontology"
                },
                {
                    "description": "Axioms defined within Uberon and to be used in imports for other ontologies",
                    "id": "uberon/uberon-base.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/uberon/uberon-base.owl",
                    "page": "https://github.com/INCATools/ontology-development-kit/issues/50",
                    "title": "Uberon base ontology"
                },
                {
                    "description": "Uberon edition that excludes external ontologies and most relations",
                    "format": "obo",
                    "id": "uberon/uberon-basic.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo",
                    "title": "Uberon basic",
                    "type": "obo-basic-ontology"
                },
                {
                    "description": "Uberon plus all metazoan ontologies",
                    "id": "uberon/collected-metazoan.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl",
                    "page": "https://obophenotype.github.io/uberon/combined_multispecies/",
                    "taxon": "Metazoa",
                    "title": "Uberon collected metazoan ontology",
                    "type": "MergedOntology"
                },
                {
                    "description": "Uberon and all metazoan ontologies with redundant species-specific terms removed",
                    "id": "uberon/composite-metazoan.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl",
                    "page": "https://obophenotype.github.io/uberon/combined_multispecies/",
                    "taxon": "Metazoa",
                    "title": "Uberon composite metazoan ontology",
                    "type": "MergedOntology"
                },
                {
                    "id": "uberon/composite-vertebrate.owl",
                    "mireots_from": [
                        "zfa",
                        "xao",
                        "fbbt",
                        "wbbt",
                        "ma",
                        "fma",
                        "emapa",
                        "ehdaa2"
                    ],
                    "ontology_purl": "http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl",
                    "page": "https://obophenotype.github.io/uberon/combined_multispecies/",
                    "taxon": "Vertebrata",
                    "title": "Uberon composite vertebrate ontology",
                    "type": "MergedOntology"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/22293552",
                    "title": "Uberon, an integrative multi-species anatomy ontology"
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/25009735",
                    "title": "Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon"
                }
            ],
            "releases": "http://purl.obolibrary.org/obo/uberon/releases/",
            "repository": "https://github.com/obophenotype/uberon",
            "slack": "https://obo-communitygroup.slack.com/archives/C01CR698CF2",
            "taxon": {
                "id": "NCBITaxon:33208",
                "label": "Metazoa"
            },
            "title": "Uberon multi-species anatomy ontology",
            "tracker": "https://github.com/obophenotype/uberon/issues",
            "twitter": "uberanat",
            "usages": [
                {
                    "description": "Bgee is a database to retrieve and compare gene expression patterns between animal species. Bgee in using Uberon to annotate the site of expression, and Bgee curators one the major contributors to the ontology.",
                    "examples": [
                        {
                            "description": "Uberon terms used to annotate expression of human hemoglobin subunit beta",
                            "url": "http://bgee.org/?page=gene&gene_id=ENSG00000244734"
                        }
                    ],
                    "seeAlso": "https://doi.org/10.25504/FAIRsharing.x6d6sx",
                    "type": "annotation",
                    "user": "http://bgee.org/"
                },
                {
                    "description": "The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. The ENCODE DCC users Uberon to annotate samples",
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/25776021",
                            "title": "Ontology application and use at the ENCODE DCC"
                        }
                    ],
                    "seeAlso": "https://doi.org/10.25504/FAIRsharing.v0hbjs",
                    "type": "annotation",
                    "user": "https://www.encodeproject.org/"
                },
                {
                    "description": "FANTOM5 is using Uberon and CL to annotate samples allowing for transcriptome analyses with cell-type and tissue-level specificity.",
                    "examples": [
                        {
                            "description": "FANTOM5 samples annotated to telencephalon or its parts",
                            "url": "http://fantom.gsc.riken.jp/5/sstar/UBERON:0001893"
                        }
                    ],
                    "type": "annotation",
                    "user": "http://fantom5-collaboration.gsc.riken.jp/"
                },
                {
                    "description": "Querying expression and phenotype data",
                    "type": "query",
                    "user": "https://monarchinitiative.org/"
                },
                {
                    "description": "GO Database is used for querying for functional annotations relevant to a tissue",
                    "examples": [
                        {
                            "description": "GO annotations relevant to the uberon class for brain",
                            "url": "http://amigo.geneontology.org/amigo/term/UBERON:0000955"
                        }
                    ],
                    "type": "query",
                    "user": "https://geneontology.org/"
                },
                {
                    "description": "The Phenoscape project is both a major driver of and contributor to Uberon, contibuting thousands of terms. The teleost (bony fishes) component of Uberon was derived from the Teleost Anatomy Ontology, developed by the Phenoscape group. Most of the high level design of the skeletal system comes from the Vertebrate Skeletal Anatomy Ontology (VSAO), also created by the Phenoscape group. Phenoscape curators continue to extend the ontology, covering a wide variety of tetrapod structures, with an emphasis on the appendicular system.",
                    "user": "http://phenoscape.org"
                },
                {
                    "description": "Searchable collection of neuroscience data and ontology for neuroscience",
                    "type": "Database",
                    "user": "https://neuinfo.org/"
                },
                {
                    "description": "cooperative data platform to be used by diverse communities in making data more FAIR.",
                    "type": "Database",
                    "user": "https://scicrunch.org/"
                },
                {
                    "description": "SCPortalen",
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/29045713",
                            "title": "SCPortalen: human and mouse single-cell centric database"
                        }
                    ],
                    "type": "Database",
                    "user": "http://single-cell.clst.riken.jp/"
                },
                {
                    "description": "ChEMBL uses Uberon to describe organ/tissue information in assays",
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/30398643",
                            "title": "ChEMBL: towards direct deposition of bioassay data"
                        }
                    ],
                    "type": "Database",
                    "user": "https://www.ebi.ac.uk/chembl/"
                }
            ],
            "wikidata_template": "https://en.wikipedia.org/wiki/Template:Uberon"
        },
        {
            "activity_status": "active",
            "build": {
                "method": "obo2owl",
                "source_url": "https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo"
            },
            "contact": {
                "email": "g.gkoutos@gmail.com",
                "github": "gkoutos",
                "label": "George Gkoutos",
                "orcid": "0000-0002-2061-091X"
            },
            "description": "Metrical units for use in conjunction with PATO",
            "domain": "phenotype",
            "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
            "id": "uo",
            "in_foundry": false,
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/uo.owl",
            "preferredPrefix": "UO",
            "products": [
                {
                    "id": "uo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/uo.owl"
                },
                {
                    "id": "uo.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/uo.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/23060432",
                    "title": "The Units Ontology: a tool for integrating units of measurement in science"
                }
            ],
            "repository": "https://github.com/bio-ontology-research-group/unit-ontology",
            "title": "Units of measurement ontology",
            "tracker": "https://github.com/bio-ontology-research-group/unit-ontology/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "method": "archive",
                "path": "archive/ontology",
                "source_url": "http://build.berkeleybop.org/job/build-pheno-ontologies/lastSuccessfulBuild/artifact/*zip*/archive.zip"
            },
            "contact": {
                "email": "vasilevs@ohsu.edu",
                "github": "nicolevasilevsky",
                "label": "Nicole Vasilevsky",
                "orcid": "0000-0001-5208-3432"
            },
            "description": "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.",
            "domain": "phenotype",
            "homepage": "https://github.com/obophenotype/upheno",
            "id": "upheno",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "mailing_list": "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors",
            "ontology_purl": "http://purl.obolibrary.org/obo/upheno.owl",
            "preferredPrefix": "UPHENO",
            "products": [
                {
                    "description": "uPheno 1 is no longer actively maintained, please start using uPheno 2 (see below).",
                    "id": "upheno.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/upheno.owl",
                    "page": "https://github.com/obophenotype/upheno",
                    "title": "uPheno 1 (inactive)"
                },
                {
                    "description": "No longer actively maintained.",
                    "id": "upheno/mp-hp-view.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/upheno/mp-hp-view.owl",
                    "page": "https://github.com/obophenotype/upheno/tree/master/hp-mp",
                    "title": "uPheno MP-HP equivalence axioms"
                },
                {
                    "description": "The new version of uPheno, along with species independent phenotypes amd additional phenotype relations. The ontology is still in Beta status, but we recommend users to migrate their infrastructures to uPheno 2 as uPheno 1 is no longer actively maintained.",
                    "id": "upheno/v2/upheno.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/upheno/v2/upheno.owl",
                    "page": "https://github.com/obophenotype/upheno-dev",
                    "title": "uPheno 2"
                }
            ],
            "publications": [
                {
                    "id": "https://zenodo.org/record/2382757",
                    "title": "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species"
                },
                {
                    "id": "https://zenodo.org/record/3352149",
                    "title": "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop: 2nd edition"
                }
            ],
            "repository": "https://github.com/obophenotype/upheno",
            "title": "Unified phenotype ontology (uPheno)",
            "tracker": "https://github.com/obophenotype/upheno/issues",
            "usages": [
                {
                    "description": "uPheno is used by the Monarch Initiative for cross-species inference.",
                    "examples": [
                        {
                            "description": "Characteristic neurologic anomaly resulting form degeneration of dopamine-generating cells in the substantia nigra, a region of the midbrain, characterized clinically by shaking, rigidity, slowness of movement and difficulty with walking and gait.",
                            "url": "https://monarchinitiative.org/phenotype/HP:0001300#disease"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/27899636",
                            "title": "The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species "
                        }
                    ],
                    "type": "analysis",
                    "user": "https://monarchinitiative.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "Sabrina@tislab.org",
                "github": "sabrinatoro",
                "label": "Sabrina Toro",
                "orcid": "0000-0002-4142-7153"
            },
            "dependencies": [
                {
                    "id": "ncbitaxon"
                }
            ],
            "description": "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names.",
            "domain": "organisms",
            "homepage": "https://github.com/monarch-initiative/vertebrate-breed-ontology",
            "id": "vbo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/vbo.owl",
            "preferredPrefix": "VBO",
            "products": [
                {
                    "id": "vbo.owl",
                    "name": "Vertebrate Breed Ontology main release in OWL format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vbo.owl"
                },
                {
                    "id": "vbo.obo",
                    "name": "Vertebrate Breed Ontology additional release in OBO format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vbo.obo"
                },
                {
                    "id": "vbo.json",
                    "name": "Vertebrate Breed Ontology additional release in OBOJSon format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vbo.json"
                },
                {
                    "id": "vbo/vbo-base.owl",
                    "name": "Vertebrate Breed Ontology main release in OWL format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vbo/vbo-base.owl"
                },
                {
                    "id": "vbo/vbo-base.obo",
                    "name": "Vertebrate Breed Ontology additional release in OBO format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vbo/vbo-base.obo"
                },
                {
                    "id": "vbo/vbo-base.json",
                    "name": "Vertebrate Breed Ontology additional release in OBOJSon format",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vbo/vbo-base.json"
                }
            ],
            "repository": "https://github.com/monarch-initiative/vertebrate-breed-ontology",
            "title": "Vertebrate Breed Ontology",
            "tracker": "https://github.com/monarch-initiative/vertebrate-breed-ontology/issues",
            "usages": [
                {
                    "description": "VBO is used in the Online Mendelian Inheritance in Animals (OMIA) for breed annotations.",
                    "examples": [
                        {
                            "description": "Urticaria pigmentosa affects the Sphynx (Cat) (VBO:0100230) breed.",
                            "url": "https://www.omia.org/OMIA001289/9685/"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://omia.org/home/"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "source_url": "https://raw.githubusercontent.com/vaccineontology/VO/master/src/VO_merged.owl"
            },
            "contact": {
                "email": "yongqunh@med.umich.edu",
                "github": "yongqunh",
                "label": "Yongqunh He",
                "orcid": "0000-0001-9189-9661"
            },
            "description": "VO is a biomedical ontology in the domain of vaccine and vaccination.",
            "domain": "health",
            "homepage": "https://violinet.org/vaccineontology",
            "id": "vo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/vo.owl",
            "preferredPrefix": "VO",
            "products": [
                {
                    "id": "vo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vo.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/23256535",
                    "title": "Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses"
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/21624163",
                    "title": "Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology"
                }
            ],
            "repository": "https://github.com/vaccineontology/VO",
            "title": "Vaccine Ontology",
            "tracker": "https://github.com/vaccineontology/VO/issues",
            "usages": [
                {
                    "description": "VIOLIN uses VO to standardize vaccine information",
                    "examples": [
                        {
                            "description": "VIOLIN using VO grouped all SARS-CoV-2 vaccines",
                            "url": "https://violinet.org/canvaxkb/vaccine_detail.php?c_vaccine_id=5339"
                        },
                        {
                            "description": "A specific vaccine ‘Allogeneic Tumor Cell Vaccine’ curated in VO for VIOLIN vaccine record",
                            "url": "https://violinet.org/vaxquery/query_detail.php?c_pathogen_id=321#vaccine_5878"
                        }
                    ],
                    "user": "https://violinet.org"
                },
                {
                    "description": "Vaccine Adjuvant Compendium (VAC) uses Vaccine Ontology to standard vaccine adjuvants developed by NIH",
                    "examples": [
                        {
                            "description": "A specific vaccine adjuvant, such as CaPNP (CaPtivant)(TM), in Vaccine Adjuvant Compendium, uses VO_0005295 ‘CaPNP (CaPtivant)(TM) vaccine adjuvant’",
                            "url": "https://vac.niaid.nih.gov/view?id=11"
                        }
                    ],
                    "user": "https://www.niaid.nih.gov/research/vaccine-adjuvant-compendium-vac"
                },
                {
                    "description": "ImmPort uses Vaccine Ontology to standardize vaccine recorded collected in NIH funded ImmPort studies",
                    "examples": [
                        {
                            "description": "ImmPort data used VO for annotation shown in its dataModel",
                            "url": "https://www.immport.org/shared/dataModel"
                        }
                    ],
                    "user": "https://www.immport.org/"
                },
                {
                    "description": "Human Immunology Project Consortium (HIPC) uses VO to standardize vaccine records",
                    "examples": [
                        {
                            "description": "Influenza Vaccine Live, Intranasal used VO_0000044",
                            "url": "http://www.hipc-dashboard.org/#vaccine/vo-0000044"
                        }
                    ],
                    "user": "https://immunespace.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "svn co http://phenotype-ontologies.googlecode.com/svn/trunk/src/ontology/vt",
                "method": "vcs",
                "system": "svn"
            },
            "contact": {
                "email": "caripark@iastate.edu",
                "github": "caripark",
                "label": "Carissa Park",
                "orcid": "0000-0002-2346-5201"
            },
            "description": "An ontology of traits covering vertebrates",
            "domain": "phenotype",
            "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
            "id": "vt",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/vt.owl",
            "preferredPrefix": "VT",
            "products": [
                {
                    "id": "vt.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vt.owl"
                }
            ],
            "repository": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
            "title": "Vertebrate trait ontology",
            "tracker": "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues",
            "usages": [
                {
                    "description": "The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) annotates trait mapping data for livestock animals using the VTO",
                    "examples": [
                        {
                            "description": "Links to cattle QTL associated with the VTO term gastrointestinal system morphology trait or its descendants",
                            "url": "https://www.animalgenome.org/cgi-bin/QTLdb/BT/traitsrch?tword=Gastrointestinal%20tract%20weight"
                        }
                    ],
                    "user": "https://www.animalgenome.org/cgi-bin/QTLdb/index"
                },
                {
                    "description": "The Rat Genome Database (RGD) uses the VTO to annotate rat QTL",
                    "examples": [
                        {
                            "description": "Annotations of rat QTL associated with the VTO term cholesterol amount or its descendants",
                            "url": "https://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=VT:0003947&species=Rat"
                        }
                    ],
                    "user": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=VT:0000001"
                },
                {
                    "description": "The Mouse Phenome Database (MPD) uses the VTO to annotate mouse strain traits",
                    "examples": [
                        {
                            "description": "Studies in the MPD database that have measurements related to the VTO term spleen size trait or its descendants",
                            "url": "https://phenome.jax.org/ontologies/VT:0002224"
                        }
                    ],
                    "user": "https://phenome.jax.org/ontologies/navigate/VT:0000001"
                }
            ]
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "balhoff@renci.org",
                "github": "balhoff",
                "label": "Jim Balhoff",
                "orcid": "0000-0002-8688-6599"
            },
            "description": "Comprehensive hierarchy of extinct and extant vertebrate taxa.",
            "domain": "organisms",
            "homepage": "https://github.com/phenoscape/vertebrate-taxonomy-ontology",
            "id": "vto",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "http://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/vto.owl",
            "preferredPrefix": "VTO",
            "products": [
                {
                    "id": "vto.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vto.owl"
                },
                {
                    "id": "vto.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/vto.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://doi.org/10.1186/2041-1480-4-34",
                    "title": "The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes"
                }
            ],
            "repository": "https://github.com/phenoscape/vertebrate-taxonomy-ontology",
            "title": "Vertebrate Taxonomy Ontology",
            "tracker": "https://github.com/phenoscape/vertebrate-taxonomy-ontology/issues",
            "usages": [
                {
                    "description": "Phenoscape uses VTO to annotate systematics data",
                    "user": "http://phenoscape.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/obophenotype/c-elegans-gross-anatomy-ontology.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "raymond@caltech.edu",
                "github": "raymond91125",
                "label": "Raymond Lee",
                "orcid": "0000-0002-8151-7479"
            },
            "description": "A structured controlled vocabulary of the anatomy of <i>Caenorhabditis elegans</i>.",
            "domain": "anatomy and development",
            "homepage": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology",
            "id": "wbbt",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/wbbt.owl",
            "preferredPrefix": "WBbt",
            "products": [
                {
                    "id": "wbbt.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/wbbt.owl"
                },
                {
                    "id": "wbbt.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/wbbt.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/18629098",
                    "title": "Building a cell and anatomy ontology of Caenorhabditis elegans"
                }
            ],
            "repository": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology",
            "taxon": {
                "id": "NCBITaxon:6237",
                "label": "Caenorhabditis"
            },
            "title": "C. elegans Gross Anatomy Ontology",
            "tracker": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/issues",
            "usages": [
                {
                    "description": "WormBase uses WBbt to curate anatomical expression patterns and anatomy function annotations, and to allow search and indexing on the WormBase site",
                    "examples": [
                        {
                            "description": "Expression for gene daf-16 with WormBase ID WBGene00000912",
                            "url": "http://www.wormbase.org/db/get?name=WBGene00000912;class=Gene;widget=expression"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/31642470",
                            "title": "WormBase: a modern Model Organism Information Resource"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://www.wormbase.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/obophenotype/c-elegans-development-ontology.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "cgrove@caltech.edu",
                "github": "chris-grove",
                "label": "Chris Grove",
                "orcid": "0000-0001-9076-6015"
            },
            "description": "A structured controlled vocabulary of the development of <i>Caenorhabditis elegans</i>.",
            "domain": "anatomy and development",
            "homepage": "https://github.com/obophenotype/c-elegans-development-ontology",
            "id": "wbls",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/wbls.owl",
            "preferredPrefix": "WBls",
            "products": [
                {
                    "id": "wbls.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/wbls.owl"
                },
                {
                    "id": "wbls.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/wbls.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/31642470",
                    "title": "WormBase: a modern Model Organism Information Resource"
                }
            ],
            "repository": "https://github.com/obophenotype/c-elegans-development-ontology",
            "tags": [
                "developemental life stage"
            ],
            "taxon": {
                "id": "NCBITaxon:6237",
                "label": "Caenorhabditis"
            },
            "title": "C. elegans development ontology",
            "tracker": "https://github.com/obophenotype/c-elegans-development-ontology/issues",
            "usages": [
                {
                    "description": "WormBase uses WBls to curate temporal expression patterns, and to allow search and indexing on the WormBase site",
                    "examples": [
                        {
                            "description": "Expression for daf-16 gene with WormBase ID WBGene00000912.",
                            "url": "http://www.wormbase.org/db/get?name=WBGene00000912;class=Gene;widget=expression"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/31642470",
                            "title": "WormBase: a modern Model Organism Information Resource"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://www.wormbase.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/obophenotype/c-elegans-phenotype-ontology.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "cgrove@caltech.edu",
                "github": "chris-grove",
                "label": "Chris Grove",
                "orcid": "0000-0001-9076-6015"
            },
            "description": "A structured controlled vocabulary of <i>Caenorhabditis elegans</i> phenotypes",
            "domain": "phenotype",
            "homepage": "https://github.com/obophenotype/c-elegans-phenotype-ontology",
            "id": "wbphenotype",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 4.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/4.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/wbphenotype.owl",
            "preferredPrefix": "WBPhenotype",
            "products": [
                {
                    "id": "wbphenotype.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/wbphenotype.owl"
                },
                {
                    "id": "wbphenotype.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/wbphenotype.obo"
                },
                {
                    "id": "wbphenotype/wbphenotype-base.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-base.owl"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/21261995",
                    "title": "Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community."
                }
            ],
            "repository": "https://github.com/obophenotype/c-elegans-phenotype-ontology",
            "taxon": {
                "id": "NCBITaxon:6237",
                "label": "Caenorhabditis"
            },
            "title": "C. elegans phenotype",
            "tracker": "https://github.com/obophenotype/c-elegans-phenotype-ontology/issues",
            "usages": [
                {
                    "description": "WormBase uses WBPhenotype to curate worm phenotypes, and to allow search and indexing on the WormBase site",
                    "examples": [
                        {
                            "description": "Expression for daf-16 gene with WormBase ID WBGene00000912.",
                            "url": "http://www.wormbase.org/db/get?name=WBGene00000912;class=Gene;widget=expression"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/31642470",
                            "title": "WormBase: a modern Model Organism Information Resource"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://www.wormbase.org/"
                },
                {
                    "description": "Monarch integrates phenotype annotations from sources such as WormBase, and allows for querying using the WBPhenotype ontology.",
                    "examples": [
                        {
                            "description": "Egg long: The fertilized oocytes have a greater than standard length measured end to end compared to control.",
                            "url": "https://monarchinitiative.org/phenotype/WBPhenotype%3A0000370"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/27899636",
                            "title": "The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species "
                        }
                    ],
                    "type": "annotation",
                    "user": "https://monarchinitiative.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "infallible": 0,
                "method": "obo2owl",
                "source_url": "https://raw.githubusercontent.com/xenopus-anatomy/xao/master/xenopus_anatomy.obo"
            },
            "contact": {
                "email": "Erik.Segerdell@cchmc.org",
                "github": "seger",
                "label": "Erik Segerdell",
                "orcid": "0000-0002-9611-1279"
            },
            "description": "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.",
            "domain": "anatomy and development",
            "homepage": "http://www.xenbase.org/anatomy/xao.do?method=display",
            "id": "xao",
            "in_foundry_order": 1,
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/xao.owl",
            "preferredPrefix": "XAO",
            "products": [
                {
                    "id": "xao.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/xao.owl"
                },
                {
                    "id": "xao.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/xao.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/18817563",
                    "title": "An ontology for Xenopus anatomy and development."
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/24139024",
                    "title": "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase."
                }
            ],
            "repository": "https://github.com/xenopus-anatomy/xao",
            "taxon": {
                "id": "NCBITaxon:8353",
                "label": "Xenopus"
            },
            "title": "Xenopus Anatomy Ontology",
            "tracker": "https://github.com/xenopus-anatomy/xao/issues",
            "usages": [
                {
                    "description": "Xenbase uses XAO to annotate gene expression.",
                    "examples": [
                        {
                            "description": "Xenopus genes expressed in the pronephric kidney.",
                            "url": "http://www.xenbase.org/anatomy/showanatomy.do?method=displayAnatomySummary&anatomyId=463"
                        }
                    ],
                    "user": "http://www.xenbase.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "RGD",
                    "title": "RGD Ontology Browser",
                    "url": "http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000"
                }
            ],
            "build": {
                "method": "obo2owl",
                "source_url": "https://download.rgd.mcw.edu/ontology/experimental_condition/experimental_condition.obo"
            },
            "contact": {
                "email": "jrsmith@mcw.edu",
                "github": "jrsjrs",
                "label": "Jennifer Smith",
                "orcid": "0000-0002-6443-9376"
            },
            "depicted_by": "http://rgd.mcw.edu/common/images/rgd_LOGO_blue_rgd.gif",
            "description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.",
            "domain": "health",
            "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000",
            "id": "xco",
            "layout": "ontology_detail",
            "license": {
                "label": "CC0 1.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
                "url": "https://creativecommons.org/publicdomain/zero/1.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/xco.owl",
            "page": "https://download.rgd.mcw.edu/ontology/experimental_condition/",
            "preferredPrefix": "XCO",
            "products": [
                {
                    "id": "xco.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/xco.owl"
                },
                {
                    "id": "xco.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/xco.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/22654893",
                    "title": "Three ontologies to define phenotype measurement data."
                },
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/24103152",
                    "title": "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications."
                }
            ],
            "repository": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology",
            "tags": [
                "clinical"
            ],
            "title": "Experimental condition ontology",
            "tracker": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "lutz.fischer@tu-berlin.de",
                "github": "lutzfischer",
                "label": "Lutz Fischer",
                "orcid": "0000-0003-4978-0864"
            },
            "description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.",
            "domain": "chemistry and biochemistry",
            "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
            "id": "xlmod",
            "label": "xlmod",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "https://creativecommons.org/licenses/by/3.0/"
            },
            "mailing_list": "psidev-ms-vocab@lists.sourceforge.net",
            "ontology_purl": "http://purl.obolibrary.org/obo/xlmod.owl",
            "page": "http://www.psidev.info/groups/controlled-vocabularies",
            "preferredPrefix": "XLMOD",
            "products": [
                {
                    "id": "xlmod.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/xlmod.obo"
                },
                {
                    "id": "xlmod.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/xlmod.owl"
                }
            ],
            "repository": "https://github.com/HUPO-PSI/xlmod-CV",
            "tags": [
                "MS cross-linker reagents"
            ],
            "title": "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary",
            "tracker": "https://github.com/HUPO-PSI/xlmod-CV/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "Erik.Segerdell@cchmc.org",
                "github": "seger",
                "label": "Erik Segerdell",
                "orcid": "0000-0002-9611-1279"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "chebi"
                },
                {
                    "id": "cl"
                },
                {
                    "id": "go"
                },
                {
                    "id": "iao"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "xao"
                }
            ],
            "description": "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.",
            "domain": "phenotype",
            "homepage": "https://github.com/obophenotype/xenopus-phenotype-ontology",
            "id": "xpo",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/xpo.owl",
            "preferredPrefix": "XPO",
            "products": [
                {
                    "id": "xpo.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/xpo.owl"
                },
                {
                    "id": "xpo.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/xpo.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/35317743",
                    "title": "The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development."
                }
            ],
            "repository": "https://github.com/obophenotype/xenopus-phenotype-ontology",
            "taxon": {
                "id": "NCBITaxon:8353",
                "label": "Xenopus"
            },
            "title": "Xenopus Phenotype Ontology",
            "tracker": "https://github.com/obophenotype/xenopus-phenotype-ontology/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "method": "obo2owl",
                "source_url": "https://raw.githubusercontent.com/ybradford/zebrafish-experimental-conditions-ontology/master/zeco.obo"
            },
            "contact": {
                "email": "ybradford@zfin.org",
                "github": "ybradford",
                "label": "Yvonne Bradford",
                "orcid": "0000-0002-9900-7880"
            },
            "description": "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN",
            "domain": "environment",
            "homepage": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology",
            "id": "zeco",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/zeco.owl",
            "preferredPrefix": "ZECO",
            "products": [
                {
                    "id": "zeco.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zeco.obo"
                },
                {
                    "id": "zeco.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zeco.owl"
                },
                {
                    "id": "zeco.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zeco.json"
                }
            ],
            "repository": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology",
            "taxon": {
                "id": "NCBITaxon:7954",
                "label": "Danio"
            },
            "title": "Zebrafish Experimental Conditions Ontology",
            "tracker": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology/issues"
        },
        {
            "activity_status": "active",
            "build": {
                "infallible": 1,
                "method": "obo2owl",
                "notes": "may be ready to switch to vcs soon",
                "source_url": "https://raw.githubusercontent.com/cerivs/zebrafish-anatomical-ontology/master/src/zebrafish_anatomy.obo"
            },
            "contact": {
                "email": "van_slyke@zfin.org",
                "github": "cerivs",
                "label": "Ceri Van Slyke",
                "orcid": "0000-0002-2244-7917"
            },
            "description": "A structured controlled vocabulary of the anatomy and development of the Zebrafish",
            "domain": "anatomy and development",
            "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
            "id": "zfa",
            "in_foundry_order": 1,
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/zfa.owl",
            "preferredPrefix": "ZFA",
            "products": [
                {
                    "id": "zfa.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zfa.owl"
                },
                {
                    "id": "zfa.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zfa.obo"
                }
            ],
            "publications": [
                {
                    "id": "https://www.ncbi.nlm.nih.gov/pubmed/24568621",
                    "title": "The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio."
                }
            ],
            "repository": "https://github.com/cerivs/zebrafish-anatomical-ontology",
            "taxon": {
                "id": "NCBITaxon:7954",
                "label": "Danio"
            },
            "title": "Zebrafish anatomy and development ontology",
            "tracker": "https://github.com/cerivs/zebrafish-anatomical-ontology/issues",
            "usages": [
                {
                    "description": "ZFIN uses ZFA to annotate gene expression and phenotype",
                    "examples": [
                        {
                            "description": "zebrafish genes expressed in hindbrain and genotypes with hindbrain phenotype",
                            "url": "http://zfin.org/ZFA:0000029"
                        }
                    ],
                    "user": "http://zfin.org"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "infallible": 1,
                "method": "obo2owl",
                "source_url": "https://raw.githubusercontent.com/obophenotype/developmental-stage-ontologies/master/src/zfs/zfs.obo"
            },
            "contact": {
                "email": "van_slyke@zfin.org",
                "github": "cerivs",
                "label": "Ceri Van Slyke",
                "orcid": "0000-0002-2244-7917"
            },
            "description": "Developmental stages of the Zebrafish",
            "domain": "anatomy and development",
            "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
            "id": "zfs",
            "in_foundry": false,
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/zfs.owl",
            "page": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/ZFS",
            "preferredPrefix": "ZFS",
            "products": [
                {
                    "id": "zfs.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zfs.owl"
                },
                {
                    "id": "zfs.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zfs.obo"
                }
            ],
            "repository": "https://github.com/cerivs/zebrafish-anatomical-ontology",
            "taxon": {
                "id": "NCBITaxon:7954",
                "label": "Danio"
            },
            "title": "Zebrafish developmental stages ontology",
            "tracker": "https://github.com/cerivs/zebrafish-anatomical-ontology/issues"
        },
        {
            "activity_status": "active",
            "contact": {
                "email": "ybradford@zfin.org",
                "github": "ybradford",
                "label": "Yvonne Bradford",
                "orcid": "0000-0002-9900-7880"
            },
            "dependencies": [
                {
                    "id": "bfo"
                },
                {
                    "id": "bspo"
                },
                {
                    "id": "go"
                },
                {
                    "id": "pato"
                },
                {
                    "id": "ro"
                },
                {
                    "id": "uberon"
                },
                {
                    "id": "zfa"
                }
            ],
            "description": "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.",
            "domain": "phenotype",
            "homepage": "https://github.com/obophenotype/zebrafish-phenotype-ontology",
            "id": "zp",
            "layout": "ontology_detail",
            "license": {
                "label": "CC BY 3.0",
                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
                "url": "http://creativecommons.org/licenses/by/3.0/"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/zp.owl",
            "preferredPrefix": "ZP",
            "products": [
                {
                    "id": "zp.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zp.owl"
                },
                {
                    "id": "zp.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/zp.obo"
                }
            ],
            "repository": "https://github.com/obophenotype/zebrafish-phenotype-ontology",
            "title": "Zebrafish Phenotype Ontology",
            "tracker": "https://github.com/obophenotype/zebrafish-phenotype-ontology/issues",
            "usages": [
                {
                    "description": "Monarch integrates phenotype annotations from sources such as ZFIIN, and allows for querying using the ZP ontology.",
                    "examples": [
                        {
                            "description": "adaxial cell absent, abnormal: Abnormal(ly) absent (of) adaxial cell.",
                            "url": "https://monarchinitiative.org/phenotype/ZP:0005692"
                        }
                    ],
                    "publications": [
                        {
                            "id": "https://www.ncbi.nlm.nih.gov/pubmed/27899636",
                            "title": "The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species"
                        }
                    ],
                    "type": "annotation",
                    "user": "https://monarchinitiative.org/"
                }
            ]
        },
        {
            "activity_status": "active",
            "build": {
                "checkout": "git clone https://github.com/Superraptor/GSSO.git",
                "path": ".",
                "system": "git"
            },
            "contact": {
                "email": "kronkcj@mail.uc.edu",
                "github": "Superraptor",
                "label": "Clair Kronk",
                "orcid": "0000-0001-8397-8810"
            },
            "description": "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences.",
            "domain": "organisms",
            "homepage": "https://gsso.research.cchmc.org/",
            "id": "gsso",
            "layout": "ontology_detail",
            "license": {
                "label": "Apache 2.0 License",
                "url": "http://www.apache.org/licenses/LICENSE-2.0"
            },
            "ontology_purl": "http://purl.obolibrary.org/obo/gsso.owl",
            "preferredPrefix": "GSSO",
            "products": [
                {
                    "id": "gsso.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gsso.owl"
                },
                {
                    "id": "gsso.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gsso.obo"
                },
                {
                    "id": "gsso.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/gsso.json"
                }
            ],
            "repository": "https://github.com/Superraptor/GSSO",
            "title": "Gender, Sex, and Sexual Orientation (GSSO) ontology",
            "tracker": "https://github.com/Superraptor/GSSO/issues"
        },
        {
            "activity_status": "active",
            "browsers": [
                {
                    "label": "HPO",
                    "title": "JAX HPO Browser",
                    "url": "https://hpo.jax.org/app/"
                },
                {
                    "label": "Monarch",
                    "title": "Monarch Phenotype Page",
                    "url": "http://monarchinitiative.org/phenotype/HP:0000118"
                }
            ],
            "contact": {
                "email": "dr.sebastian.koehler@gmail.com",
                "github": "drseb",
                "label": "Sebastian Koehler",
                "orcid": "0000-0002-5316-1399"
            },
            "depicted_by": "https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/logo/HPO-logo-black_small.png",
            "description": "A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.",
            "domain": "phenotype",
            "homepage": "http://www.human-phenotype-ontology.org/",
            "id": "hp",
            "layout": "ontology_detail",
            "license": {
                "label": "hpo",
                "url": "https://hpo.jax.org/app/license"
            },
            "mailing_list": "https://groups.io/g/human-phenotype-ontology",
            "ontology_purl": "http://purl.obolibrary.org/obo/hp.owl",
            "preferredPrefix": "HP",
            "products": [
                {
                    "derived_from": "hp/hp-simple-non-classified.owl",
                    "description": "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format.",
                    "format": "json",
                    "id": "hp.json",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hp.json",
                    "title": "Official HPO release in obographs JSON format"
                },
                {
                    "derived_from": "hp/hp-simple-non-classified.owl",
                    "description": "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format.",
                    "format": "obo",
                    "id": "hp.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hp.obo",
                    "title": "Official HPO release in OBO format"
                },
                {
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                    "format": "owl",
                    "id": "hp.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hp.owl",
                    "title": "Official HPO release in OWL"
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                    "format": "obo",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-base.json",
                    "title": "HPO base release in obographs JSON format"
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                    "format": "obo",
                    "id": "hp/hp-base.obo",
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                    "title": "HPO base release in OBO format"
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                    "format": "owl",
                    "id": "hp/hp-base.owl",
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                    "title": "HPO base release in OWL format"
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                    "id": "hp/hp-full.json",
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                    "title": "HPO full release in obographs JSON format"
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                {
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                    "description": "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format.",
                    "format": "obo",
                    "id": "hp/hp-full.obo",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-full.obo",
                    "title": "HPO full release in OBO format"
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                {
                    "description": "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format.",
                    "format": "owl",
                    "id": "hp/hp-full.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-full.owl",
                    "title": "HPO full release in OWL format"
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                    "format": "json",
                    "id": "hp/hp-international.json",
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                    "title": "HPO International Edition in obographs JSON format"
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                    "title": "HPO International Edition in OBO format"
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                    "description": "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format.",
                    "format": "owl",
                    "id": "hp/hp-international.owl",
                    "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-international.owl",
                    "title": "HPO International Edition in OWL format"
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                    "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.json",
                    "title": "HPO simple, manually classified, without imports in obographs JSON format"
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                    "id": "hp/hp-simple-non-classified.obo",
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                    "title": "HPO simple, manually classified, without imports in OBO format"
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                    "description": "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format.",
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                    "ontology_purl": "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.owl",
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                "id": "NCBITaxon:9606",
                "label": "Homo sapiens"
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