CHEBI:37945 - dibekacin

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ChEBI Name dibekacin
ChEBI ID CHEBI:37945
Definition A kanamycin that is kanamycin B lacking the 3- and 4-hydroxy groups on the 2,6-diaminosugar ring.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
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Formula C18H37N5O8
Net Charge 0
Average Mass 451.51528
Monoisotopic Mass 451.26421
InChI InChI=1S/C18H37N5O8/c19-4-6-1-2-7(20)17(28-6)30-15-8(21)3-9(22)16(14(15)27)31-18-13(26)11(23)12(25)10(5-24)29-18/h6-18,24-27H,1-5,19-23H2/t6-,7+,8-,9+,10+,11-,12+,13+,14-,15+,16-,17+,18+/m0/s1
InChIKey JJCQSGDBDPYCEO-XVZSLQNASA-N
SMILES NC[C@@H]1CC[C@@H](N)[C@H](O1)O[C@@H]1[C@@H](N)C[C@@H](N)[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](N)[C@H]2O)[C@H]1O
Roles Classification
Biological Role(s): protein synthesis inhibitor
A compound, usually an anti-bacterial agent or a toxin, which inhibits the synthesis of a protein.
antibacterial agent
A substance (or active part thereof) that kills or slows the growth of bacteria.
antimicrobial agent
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
(via carbohydrate-containing antibiotic )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing dibekacin (CHEBI:37945) has functional parent kanamycin B (CHEBI:28098)
dibekacin (CHEBI:37945) has role antibacterial agent (CHEBI:33282)
dibekacin (CHEBI:37945) has role protein synthesis inhibitor (CHEBI:48001)
dibekacin (CHEBI:37945) is a kanamycins (CHEBI:24951)
Incoming dibekacin sulfate (CHEBI:31475) has functional parent dibekacin (CHEBI:37945)
IUPAC Name
(1R,2S,3S,4R,6S)-4,6-diamino-3-(3-amino-3-deoxy-α-D-glucopyranosyloxy)-2-hydroxycyclohexyl 2,6-diamino-2,3,4,6-tetradeoxy-α-D-erythro-hexopyranoside
INN Source
dibekacin KEGG DRUG
Synonyms Sources
3',4'-Dideoxykanamycin B ChemIDplus
DKM KEGG DRUG
O-3-Amino-3-deoxy-alpha-D-glucopyranosyl-(1-4)-O-(2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranosyl-(1-6))-2-deoxy-L-streptamine ChemIDplus
Panamicin ChemIDplus
Manual Xrefs Databases
855 DrugCentral
CN101278900 Patent
CN101575354 Patent
D07811 KEGG DRUG
View more database links
Registry Numbers Types Sources
1441606 Reaxys Registry Number Reaxys
1441606 Beilstein Registry Number Beilstein
34493-98-6 CAS Registry Number ChemIDplus
Citations Waiting for Citations Types Sources
20922036 PubMed citation Europe PMC
20936279 PubMed citation Europe PMC
Last Modified
22 February 2017