call loadScript javascripts\jsmol\core\package.js
call loadScript javascripts\jsmol\core\core.z.js -- required by ClazzNode
call loadScript javascripts\jsmol\J\awtjs2d\WebOutputChannel.js
Jmol JavaScript applet jmolApplet0_object__120931763203044__ initializing
getValue debug = null
getValue logLevel = null
getValue allowjavascript = null
AppletRegistry.checkIn(jmolApplet0_object__120931763203044__)
call loadScript javascripts\jsmol\core\corestate.z.js
viewerOptions:
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(C) 2012 Jmol Development
Jmol Version: 13.2.7 $Date: 2013-10-01 11:35:15 -0500 (Tue, 01 Oct 2013) $
java.vendor: j2s
java.version: 0.0
os.name: j2s
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0_object (signed)
starting HoverWatcher_1
getValue emulate = null
defaults = "Jmol"
getValue boxbgcolor = null
getValue bgcolor = #000
backgroundColor = "#000"
getValue ANIMFRAMECallback = null
getValue APPLETREADYCallback = Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
getValue ATOMMOVEDCallback = null
getValue CLICKCallback = null
getValue ECHOCallback = null
getValue ERRORCallback = null
getValue EVALCallback = null
getValue HOVERCallback = null
getValue LOADSTRUCTCallback = null
getValue MEASURECallback = null
getValue MESSAGECallback = null
getValue MINIMIZATIONCallback = null
getValue PICKCallback = null
getValue RESIZECallback = null
getValue SCRIPTCallback = null
getValue SYNCCallback = null
getValue STRUCTUREMODIFIEDCallback = null
getValue doTranslate = null
language=en_US
getValue popupMenu = null
getValue script = null
Jmol applet jmolApplet0_object__120931763203044__ ready
call loadScript javascripts\jsmol\core\corescript.z.js
call loadScript javascripts\jsmol\J\script\FileLoadThread.js
starting QueueThread0_2
script 1 started
starting HoverWatcher_3
starting HoverWatcher_4
The Resolver thinks Mol
PB5 - Ideal conformer
RDKit 3D
starting HoverWatcher_5
Time for openFile( PB5 - Ideal conformer
RDKit 3D
42 44 0 0 0 0 0 0 0 0999 V2000
-1.1980 -0.4250 -0.0010 C 0 0 0 0 0 0 0 0 0 0 0 0
0.0000 -1.1430 0.0010 C 0 0 0 0 0 0 0 0 0 0 0 0
1.1980 -0.4250 0.0090 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.1520 0.9030 0.0040 N 0 0 0 0 0 0 0 0 0 0 0 0
2.5020 -1.1350 0.0130 C 0 0 0 0 0 0 0 0 0 0 0 0
4.9390 -1.1310 0.0120 C 0 0 0 0 0 0 0 0 0 0 0 0
6.0590 -0.1230 0.0150 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5020 -1.1350 -0.0100 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.5880 0.3360 1.1690 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.6050 1.2780 -1.1710 C 0 0 0 0 0 0 0 0 0 0 0 0
6.5810 0.3420 1.2120 C 0 0 0 0 0 0 0 0 0 0 0 0
7.6110 1.2690 1.1670 C 0 0 0 0 0 0 0 0 0 0 0 0
8.0800 1.6960 -0.0620 C 0 0 0 0 0 0 0 0 0 0 0 0
6.5820 0.3450 -1.1750 C 0 0 0 0 0 0 0 0 0 0 0 0
1.1520 0.9030 0.0190 N 0 0 0 0 0 0 0 0 0 0 0 0
0.0000 1.5410 0.0110 C 0 0 0 0 0 0 0 0 0 0 0 0
3.6520 -0.4310 0.0150 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.6520 -0.4310 -0.0120 N 0 0 0 0 0 0 0 0 0 0 0 0
-4.9390 -1.1310 -0.0210 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.0590 -0.1230 -0.0220 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.5650 1.2220 1.1760 N 0 0 0 0 0 0 0 0 0 0 0 0
-8.0800 1.6950 0.0580 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.5750 0.3520 -1.2180 C 0 0 0 0 0 0 0 0 0 0 0 0
7.5590 1.2310 -1.1800 N 0 0 0 0 0 0 0 0 0 0 0 0
-2.5330 -2.3490 -0.0150 O 0 0 0 0 0 0 0 0 0 0 0 0
2.5330 -2.3490 0.0090 O 0 0 0 0 0 0 0 0 0 0 0 0
0.0000 -2.2230 -0.0030 H 0 0 0 0 0 0 0 0 0 0 0 0
5.0130 -1.7590 0.9000 H 0 0 0 0 0 0 0 0 0 0 0 0
5.0120 -1.7530 -0.8800 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1920 -0.0290 2.1050 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0310 1.6700 -2.0830 H 0 0 0 0 0 0 0 0 0 0 0 0
6.1950 -0.0080 2.1580 H 0 0 0 0 0 0 0 0 0 0 0 0
8.0410 1.6540 2.0800 H 0 0 0 0 0 0 0 0 0 0 0 0
8.8810 2.4180 -0.1060 H 0 0 0 0 0 0 0 0 0 0 0 0
6.1810 -0.0130 -2.1120 H 0 0 0 0 0 0 0 0 0 0 0 0
0.0000 2.6210 0.0150 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6270 0.5380 0.0180 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.6270 0.5380 -0.0080 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0080 -1.7530 -0.9140 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0160 -1.7600 0.8660 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.8820 2.4170 0.1040 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1840 0.0080 -2.1650 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 2 0
1 4 1 0
1 8 1 0
2 3 1 0
2 27 1 0
3 5 1 0
3 15 2 0
4 16 2 0
5 17 1 0
5 26 2 0
6 7 1 0
6 17 1 0
6 28 1 0
6 29 1 0
7 11 2 0
7 14 1 0
8 18 1 0
8 25 2 0
9 20 2 0
9 21 1 0
9 30 1 0
10 22 1 0
10 23 2 0
10 31 1 0
11 12 1 0
11 32 1 0
12 13 2 0
12 33 1 0
13 24 1 0
13 34 1 0
14 24 2 0
14 35 1 0
15 16 1 0
16 36 1 0
17 37 1 0
18 19 1 0
18 38 1 0
19 20 1 0
19 39 1 0
19 40 1 0
20 23 1 0
21 22 2 0
22 41 1 0
23 42 1 0
M END): 39 ms
reading 42 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
42 atoms created
ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation
Script completed
Jmol script terminated