CHEBI:84594 - 5'-AGGCAAUAAAACACGACCWUAAUG-3' RNA fragment

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name 5'-AGGCAAUAAAACACGACCWUAAUG-3' RNA fragment
ChEBI ID CHEBI:84594
Definition An RNA fragment comprised of four guanosine, eleven adenosine, two uridine and five cytidine residues connected by 3'→5' phosphodiester linkages in the sequence A-G-G-C-A-A-U-A-A-A-A-C-A-C-G-A-C-C-W-U-A-A-U-G.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information No supplier information found for this compound.
Download Molfile XML SDF
Formula C240H297N101O166P24
Net Charge 0
Average Mass 7995.87360
Monoisotopic Mass 7992.16062
InChI InChI=1S/C240H297N101O166P24/c241-97-1-11-317(231(377)299-97)203-125(350)149(486-510(391,392)437-24-75-150(126(351)204(462-75)318-12-2-98(242)300-232(318)378)488-512(395,396)439-30-81-156(132(357)210(468-81)324-18-8-104(344)306-238(324)384)492-513(397,398)440-31-82-157(133(358)211(469-82)325-19-9-105(345)307-239(325)385)493-516(403,404)449-35-86-165(141(366)220(473-86)334-64-291-114-179(254)269-53-280-190(114)334)501-526(423,424)451-38-89-161(137(362)216(476-89)330-60-287-110-175(250)265-49-276-186(110)330)498-522(415,416)445-29-80-155(131(356)209(467-80)323-17-7-103(343)305-237(323)383)485-508(387,388)435-22-73-122(347)123(348)202(460-73)338-68-295-118-194(338)309-227(258)313-198(118)373)74(461-203)23-438-511(393,394)487-151-76(463-205(127(151)352)319-13-3-99(243)301-233(319)379)25-441-520(411,412)497-163-93(480-218(139(163)364)332-62-289-112-177(252)267-51-278-188(112)332)42-456-530(431,432)507-171-95(482-226(147(171)372)341-71-298-121-197(341)312-230(261)316-201(121)376)44-457-518(407,408)491-154-78(465-208(130(154)355)322-16-6-102(246)304-236(322)382)27-443-519(409,410)495-159-84(471-214(135(159)360)328-58-285-108-173(248)263-47-274-184(108)328)33-447-514(399,400)489-152-77(464-206(128(152)353)320-14-4-100(244)302-234(320)380)26-442-521(413,414)496-160-88(475-215(136(160)361)329-59-286-109-174(249)264-48-275-185(109)329)37-453-528(427,428)503-167-92(479-222(143(167)368)336-66-293-116-181(256)271-55-282-192(116)336)41-455-529(429,430)504-168-91(478-223(144(168)369)337-67-294-117-182(257)272-56-283-193(117)337)40-454-527(425,426)502-166-87(474-221(142(166)367)335-65-292-115-180(255)270-54-281-191(115)335)36-450-517(405,406)494-158-83(470-212(134(158)359)326-20-10-106(346)308-240(326)386)32-446-523(417,418)499-162-90(477-217(138(162)363)331-61-288-111-176(251)266-50-277-187(111)331)39-452-525(421,422)500-164-85(472-219(140(164)365)333-63-290-113-178(253)268-52-279-189(113)333)34-448-515(401,402)490-153-79(466-207(129(153)354)321-15-5-101(245)303-235(321)381)28-444-524(419,420)505-170-96(483-225(146(170)371)340-70-297-120-196(340)311-229(260)315-200(120)375)45-458-531(433,434)506-169-94(481-224(145(169)370)339-69-296-119-195(339)310-228(259)314-199(119)374)43-436-509(389,390)484-148-72(21-342)459-213(124(148)349)327-57-284-107-172(247)262-46-273-183(107)327/h1-20,46-96,122-171,202-226,342,347-372H,21-45H2,(H,387,388)(H,389,390)(H,391,392)(H,393,394)(H,395,396)(H,397,398)(H,399,400)(H,401,402)(H,403,404)(H,405,406)(H,407,408)(H,409,410)(H,411,412)(H,413,414)(H,415,416)(H,417,418)(H,419,420)(H,421,422)(H,423,424)(H,425,426)(H,427,428)(H,429,430)(H,431,432)(H,433,434)(H2,241,299,377)(H2,242,300,378)(H2,243,301,379)(H2,244,302,380)(H2,245,303,381)(H2,246,304,382)(H2,247,262,273)(H2,248,263,274)(H2,249,264,275)(H2,250,265,276)(H2,251,266,277)(H2,252,267,278)(H2,253,268,279)(H2,254,269,280)(H2,255,270,281)(H2,256,271,282)(H2,257,272,283)(H,305,343,383)(H,306,344,384)(H,307,345,385)(H,308,346,386)(H3,258,309,313,373)(H3,259,310,314,374)(H3,260,311,315,375)(H3,261,312,316,376)/t72-,73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,96-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,156-,157-,158-,159-,160-,161-,162-,163-,164-,165-,166-,167-,168-,169-,170-,171-,202-,203-,204-,205-,206-,207-,208-,209-,210-,211-,212-,213-,214-,215-,216-,217-,218-,219-,220-,221-,222-,223-,224-,225-,226-/m1/s1
InChIKey CDWDKKVUEJPVJW-YHSXPVHTSA-N
SMILES Nc1ccn([C@@H]2O[C@H](COP(O)(=O)O[C@@H]3[C@@H](COP(O)(=O)O[C@@H]4[C@@H](COP(O)(=O)O[C@@H]5[C@@H](COP(O)(=O)O[C@@H]6[C@@H](COP(O)(=O)O[C@@H]7[C@@H](COP(O)(=O)O[C@@H]8[C@@H](COP(O)(=O)O[C@@H]9[C@@H](COP(O)(=O)O[C@@H]%10[C@@H](COP(O)(=O)O[C@@H]%11[C@@H](COP(O)(=O)O[C@@H]%12[C@@H](COP(O)(=O)O[C@@H]%13[C@@H](CO)O[C@H]([C@@H]%13O)n%13cnc%14c(N)ncnc%13%14)O[C@H]([C@@H]%12O)n%12cnc%13c%12nc(N)[nH]c%13=O)O[C@H]([C@@H]%11O)n%11cnc%12c%11nc(N)[nH]c%12=O)O[C@H]([C@@H]%10O)n%10ccc(N)nc%10=O)O[C@H]([C@@H]9O)n9cnc%10c(N)ncnc9%10)O[C@H]([C@@H]8O)n8cnc9c(N)ncnc89)O[C@H]([C@@H]7O)n7ccc(=O)[nH]c7=O)O[C@H]([C@@H]6O)n6cnc7c(N)ncnc67)O[C@H]([C@@H]5O)n5cnc6c(N)ncnc56)O[C@H]([C@@H]4O)n4cnc5c(N)ncnc45)O[C@H]([C@@H]3O)n3cnc4c(N)ncnc34)[C@@H](OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c3nc(N)[nH]c4=O)n3ccc(=O)[nH]c3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3ccc(=O)[nH]c3=O)n3ccc(=O)[nH]c3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c3nc(N)[nH]c4=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)[C@H]2O)c(=O)n1
ChEBI Ontology
Outgoing 5'-AGGCAAUAAAACACGACCWUAAUG-3' RNA fragment (CHEBI:84594) is a RNA fragment (CHEBI:82726)
IUPAC Name
A-G-G-C-A-A-U-A-A-A-A-C-A-C-G-A-C-C-W-U-A-A-U-G
Synonym Source
ApGpGpCpApApUpApApApApCpApCpGpApCpCpWpUpApApUpG ChEBI
Citation Waiting for Citations Type Source
7678618 PubMed citation Europe PMC
Last Modified
07 April 2015