CHEBI:84595 - 5'-CUGCGAUUUUAAAGACCUAGAGUAC-3' RNA fragment

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name 5'-CUGCGAUUUUAAAGACCUAGAGUAC-3' RNA fragment
ChEBI ID CHEBI:84595
Definition An RNA fragment comprised of five guanosine, eight adenosine, seven uridine and five cytidine residues connected by 3'→5' phosphodiester linkages in the sequence C-U-G-C-G-A-U-U-U-U-A-A-A-G-A-C-C-U-A-G-A-G-U-A-C.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information ZINC000230540928
Download Molfile XML SDF
Formula C238H294N94O172P24
Net Charge 0
Average Mass 7966.77780
Monoisotopic Mass 7963.08512
InChI InChI=1S/C238H294N94O172P24/c239-96-1-13-308(227(372)286-96)197-122(342)121(341)72(457-197)26-432-505(384,385)492-158-83(468-209(134(158)354)320-58-273-108-171(244)257-50-265-179(108)320)37-443-512(398,399)491-157-82(467-208(133(157)353)319-24-12-107(340)297-238(319)383)36-442-520(414,415)501-167-93(478-218(143(167)363)329-67-282-117-188(329)299-223(253)304-193(117)368)47-453-524(422,423)499-165-90(475-216(141(165)361)327-65-280-115-178(251)264-57-272-186(115)327)44-450-528(430,431)504-170-94(479-221(146(170)366)332-70-285-120-191(332)302-226(256)307-196(120)371)48-454-523(420,421)497-162-85(470-213(138(162)358)324-62-277-112-175(248)261-54-269-183(112)324)39-445-514(402,403)489-155-79(464-206(131(155)351)317-22-10-105(338)295-236(317)381)31-435-508(390,391)483-148-73(458-199(124(148)344)310-15-3-98(241)288-229(310)374)28-434-507(388,389)482-149-74(459-200(125(149)345)311-16-4-99(242)289-230(311)375)29-439-517(408,409)493-159-88(473-210(135(159)355)321-59-274-109-172(245)258-51-266-180(109)321)42-449-527(428,429)503-169-95(480-220(145(169)365)331-69-284-119-190(331)301-225(255)306-195(119)370)49-455-525(424,425)498-164-87(472-215(140(164)360)326-64-279-114-177(250)263-56-271-185(114)326)41-447-522(418,419)496-163-86(471-214(139(163)359)325-63-278-113-176(249)262-55-270-184(113)325)40-446-521(416,417)495-161-84(469-212(137(161)357)323-61-276-111-174(247)260-53-268-182(111)323)38-444-513(400,401)490-156-80(465-207(132(156)352)318-23-11-106(339)296-237(318)382)34-438-510(394,395)486-153-77(462-204(129(153)349)315-20-8-103(336)293-234(315)379)32-436-509(392,393)485-152-78(463-203(128(152)348)314-19-7-102(335)292-233(314)378)33-437-511(396,397)487-154-81(466-205(130(154)350)316-21-9-104(337)294-235(316)380)35-441-518(410,411)494-160-89(474-211(136(160)356)322-60-275-110-173(246)259-52-267-181(110)322)43-448-526(426,427)502-168-92(477-219(144(168)364)330-68-283-118-189(330)300-224(254)305-194(118)369)45-451-515(404,405)484-150-75(460-201(126(150)346)312-17-5-100(243)290-231(312)376)30-440-519(412,413)500-166-91(476-217(142(166)362)328-66-281-116-187(328)298-222(252)303-192(116)367)46-452-516(406,407)488-151-76(461-202(127(151)347)313-18-6-101(334)291-232(313)377)27-433-506(386,387)481-147-71(25-333)456-198(123(147)343)309-14-2-97(240)287-228(309)373/h1-24,50-95,121-170,197-221,333,341-366H,25-49H2,(H,384,385)(H,386,387)(H,388,389)(H,390,391)(H,392,393)(H,394,395)(H,396,397)(H,398,399)(H,400,401)(H,402,403)(H,404,405)(H,406,407)(H,408,409)(H,410,411)(H,412,413)(H,414,415)(H,416,417)(H,418,419)(H,420,421)(H,422,423)(H,424,425)(H,426,427)(H,428,429)(H,430,431)(H2,239,286,372)(H2,240,287,373)(H2,241,288,374)(H2,242,289,375)(H2,243,290,376)(H2,244,257,265)(H2,245,258,266)(H2,246,259,267)(H2,247,260,268)(H2,248,261,269)(H2,249,262,270)(H2,250,263,271)(H2,251,264,272)(H,291,334,377)(H,292,335,378)(H,293,336,379)(H,294,337,380)(H,295,338,381)(H,296,339,382)(H,297,340,383)(H3,252,298,303,367)(H3,253,299,304,368)(H3,254,300,305,369)(H3,255,301,306,370)(H3,256,302,307,371)/t71-,72-,73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,121-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,156-,157-,158-,159-,160-,161-,162-,163-,164-,165-,166-,167-,168-,169-,170-,197-,198-,199-,200-,201-,202-,203-,204-,205-,206-,207-,208-,209-,210-,211-,212-,213-,214-,215-,216-,217-,218-,219-,220-,221-/m1/s1
InChIKey KPNZCSCIQCMFSX-IGQIIPPBSA-N
SMILES Nc1ccn([C@@H]2O[C@H](COP(O)(=O)O[C@@H]3[C@@H](COP(O)(=O)O[C@@H]4[C@@H](COP(O)(=O)O[C@@H]5[C@@H](COP(O)(=O)O[C@@H]6[C@@H](COP(O)(=O)O[C@@H]7[C@@H](COP(O)(=O)O[C@@H]8[C@@H](COP(O)(=O)O[C@@H]9[C@@H](COP(O)(=O)O[C@@H]%10[C@@H](COP(O)(=O)O[C@@H]%11[C@@H](COP(O)(=O)O[C@@H]%12[C@@H](COP(O)(=O)O[C@@H]%13[C@@H](COP(O)(=O)O[C@@H]%14[C@@H](COP(O)(=O)O[C@@H]%15[C@@H](COP(O)(=O)O[C@@H]%16[C@@H](COP(O)(=O)O[C@@H]%17[C@@H](COP(O)(=O)O[C@@H]%18[C@@H](COP(O)(=O)O[C@@H]%19[C@@H](COP(O)(=O)O[C@@H]%20[C@@H](COP(O)(=O)O[C@@H]%21[C@@H](COP(O)(=O)O[C@@H]%22[C@@H](COP(O)(=O)O[C@@H]%23[C@@H](COP(O)(=O)O[C@@H]%24[C@@H](COP(O)(=O)O[C@@H]%25[C@@H](COP(O)(=O)O[C@@H]%26[C@@H](CO)O[C@H]([C@@H]%26O)n%26ccc(N)nc%26=O)O[C@H]([C@@H]%25O)n%25ccc(=O)[nH]c%25=O)O[C@H]([C@@H]%24O)n%24cnc%25c%24nc(N)[nH]c%25=O)O[C@H]([C@@H]%23O)n%23ccc(N)nc%23=O)O[C@H]([C@@H]%22O)n%22cnc%23c%22nc(N)[nH]c%23=O)O[C@H]([C@@H]%21O)n%21cnc%22c(N)ncnc%21%22)O[C@H]([C@@H]%20O)n%20ccc(=O)[nH]c%20=O)O[C@H]([C@@H]%19O)n%19ccc(=O)[nH]c%19=O)O[C@H]([C@@H]%18O)n%18ccc(=O)[nH]c%18=O)O[C@H]([C@@H]%17O)n%17ccc(=O)[nH]c%17=O)O[C@H]([C@@H]%16O)n%16cnc%17c(N)ncnc%16%17)O[C@H]([C@@H]%15O)n%15cnc%16c(N)ncnc%15%16)O[C@H]([C@@H]%14O)n%14cnc%15c(N)ncnc%14%15)O[C@H]([C@@H]%13O)n%13cnc%14c%13nc(N)[nH]c%14=O)O[C@H]([C@@H]%12O)n%12cnc%13c(N)ncnc%12%13)O[C@H]([C@@H]%11O)n%11ccc(N)nc%11=O)O[C@H]([C@@H]%10O)n%10ccc(N)nc%10=O)O[C@H]([C@@H]9O)n9ccc(=O)[nH]c9=O)O[C@H]([C@@H]8O)n8cnc9c(N)ncnc89)O[C@H]([C@@H]7O)n7cnc8c7nc(N)[nH]c8=O)O[C@H]([C@@H]6O)n6cnc7c(N)ncnc67)O[C@H]([C@@H]5O)n5cnc6c5nc(N)[nH]c6=O)O[C@H]([C@@H]4O)n4ccc(=O)[nH]c4=O)O[C@H]([C@@H]3O)n3cnc4c(N)ncnc34)[C@@H](O)[C@H]2O)c(=O)n1
ChEBI Ontology
Outgoing 5'-CUGCGAUUUUAAAGACCUAGAGUAC-3' RNA fragment (CHEBI:84595) is a RNA fragment (CHEBI:82726)
IUPAC Name
C-U-G-C-G-A-U-U-U-U-A-A-A-G-A-C-C-U-A-G-A-G-U-A-C
Synonym Source
CpUpGpCpGpApUpUpUpUpApApApGpApCpCpUpApGpApGpUpApC ChEBI
Citation Waiting for Citations Type Source
7678618 PubMed citation Europe PMC
Last Modified
07 April 2015