AmiGO 2: Term Details for "ciliary base" (GO:0097546)

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Term Information

Accession: GO:0097546
Name: ciliary base
Ontology: cellular_component
Synonyms: cilial base, cilium base, flagellar base, flagellum base
Alternate IDs: None
Definition: Area of the cilium (also called flagellum) where the basal body and the axoneme are anchored to the plasma membrane. The ciliary base encompasses the distal part of the basal body, transition fibers and transition zone and is structurally and functionally very distinct from the rest of the cilium. In this area proteins are sorted and filtered before entering the cilium, and many ciliary proteins localize specifically to this area. Source: GOC:krc, GOC:cilia, PMID:22653444
Comment: Due to resolution issues, researchers are often unable to assign protein localization to more specific ciliary compartments such as the basal body, transition fibers or transition zone, and instead refer to 'ciliary base'. The terms GO:0036064 'ciliary basal body', GO:0097539 'ciliary transition fiber' and GO:0035869 'ciliary transition zone' represent strictly defined compartments at the ciliary base and should be used for annotation whenever possible. Also, note that cilia and eukaryotic flagella are deemed to be equivalent.
History: See term history for GO:0097546 at QuickGO
Chem. react.: None
Subset: None
Related: Link to all genes and gene products annotated to ciliary base (excluding "regulates").; Link to all direct and indirect annotations to ciliary base (excluding "regulates").; Link to all direct and indirect annotations download (limited to first 10,000) for ciliary base (excluding "regulates").

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CARO:0030000 biological entity
CARO:0000000 anatomical entity
UBERON:0000061 anatomical structure
UBERON:0001062 anatomical entity
CL:0000000 cell
GO:0110165 cellular anatomical entity
CARO:0000006 material anatomical entity
GO:0042995 cell projection
CARO:0000003 connected anatomical structure
UBERON:0000465 material anatomical entity
GO:0043226 organelle
GO:0005575 cellular_component
GO:0043227 membrane-bounded organelle
GO:0120025 plasma membrane bounded cell projection
PR:000050567 protein-containing material entity
GO:0005929 cilium
GO:0097546 ciliary base

Parents of ciliary base (GO:0097546)

subject	relation	object
ciliary base	is_a	protein-containing material entity (PR:000050567)
ciliary base	BFO:0000050	cilium (GO:0005929)
ciliary base	is_a	cellular anatomical entity (GO:0110165)
ciliary base	BFO:0000051	ciliary transition fiber (GO:0097539)
ciliary base	BFO:0000051	ciliary transition zone (GO:0035869)
ciliary base	RO:0002162	Eukaryota (NCBITaxon:2759)

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