Céline Aubert
Marié-Angélique Laporte
Pier Luigi Buttigieg
AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities
Agronomy Ontology
The Agronomy Ontology by CGIAR is licensed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/).
Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.
Really of interest to developers only
BFO OWL specification label
Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2
Person:Alan Ruttenberg
Really of interest to developers only
BFO CLIF specification label
editor preferred term
The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
editor preferred term
example of usage
A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
example of usage
in branch
An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet.
GROUP:OBI
OBI_0000277
in branch
has curation status
PERSON:Alan Ruttenberg
PERSON:Bill Bug
PERSON:Melanie Courtot
has curation status
definition
The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition
editor note
An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obofoundry.org/obo/obi>
editor note
term editor
Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
term editor
alternative term
An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
alternative term
definition source
Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
PERSON:Daniel Schober
Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition source
has obsolescence reason
Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.
PERSON:Alan Ruttenberg
PERSON:Melanie Courtot
has obsolescence reason
curator note
An administrative note of use for a curator but of no use for a user
PERSON:Alan Ruttenberg
curator note
term tracker item
the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/
An IRI or similar locator for a request or discussion of an ontology term.
Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
The 'tracker item' can associate a tracker with a specific ontology term.
term tracker item
ontology term requester
The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.
Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
The 'term requester' can credit the person, organization or project who request the ontology term.
ontology term requester
is denotator type
Relates an class defined in an ontology, to the type of it's denotator
In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')
Alan Ruttenberg
is denotator type
imported from
For external terms/classes, the ontology from which the term was imported
PERSON:Alan Ruttenberg
PERSON:Melanie Courtot
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
imported from
expand expression to
ObjectProperty: RO_0002104
Label: has plasma membrane part
Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones
Chris Mungall
expand expression to
expand assertion to
ObjectProperty: RO???
Label: spatially disjoint from
Annotations: expand_assertion_to "DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom.
Chris Mungall
expand assertion to
first order logic expression
PERSON:Alan Ruttenberg
first order logic expression
antisymmetric property
part_of antisymmetric property xsd:true
Use boolean value xsd:true to indicate that the property is an antisymmetric property
Alan Ruttenberg
antisymmetric property
OBO foundry unique label
An alternative name for a class or property which is unique across the OBO Foundry.
The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .
PERSON:Alan Ruttenberg
PERSON:Bjoern Peters
PERSON:Chris Mungall
PERSON:Melanie Courtot
GROUP:OBO Foundry <http://obofoundry.org/>
OBO foundry unique label
has ID digit count
Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"
Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix" annotation property value concatenated with an integer in the id range (left padded with "0"s to make this many digits)
Person:Alan Ruttenberg
has ID digit count
has ID range allocated
Datatype: idrange:1
Annotations: 'has ID range allocated to': "Chris Mungall"
EquivalentTo: xsd:integer[> 2151 , <= 2300]
Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms
Person:Alan Ruttenberg
has ID range allocated to
has ID policy for
Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"
Relating an ontology used to record id policy to the ontology namespace whose policy it manages
Person:Alan Ruttenberg
has ID policy for
has ID prefix
Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"
Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with "0"s to make this many digits) to construct an ID for a term being created.
Person:Alan Ruttenberg
has ID prefix
elucidation
person:Alan Ruttenberg
Person:Barry Smith
Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms
elucidation
has associated axiom(nl)
Person:Alan Ruttenberg
Person:Alan Ruttenberg
An axiom associated with a term expressed using natural language
has associated axiom(nl)
has associated axiom(fol)
Person:Alan Ruttenberg
Person:Alan Ruttenberg
An axiom expressed in first order logic using CLIF syntax
has associated axiom(fol)
is allocated id range
Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. "IAO_0020000-IAO_0020999"
PERSON:Alan Ruttenberg
Add as annotation triples in the granting ontology
is allocated id range
retired from use as of
relates a class of CRID to the date after which further instances should not be made, according to the central authority
In OWL 2 add AnnotationPropertyRange xsd:dateTimeStamp
Alan Ruttenberg
retired from use as of
has ontology root term
Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root.
Nicolas Matentzoglu
has ontology root term
may be identical to
A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged.
David Osumi-Sutherland
#40
VFB
Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.
may be identical to
scheduled for obsoletion on or after
Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date.
Chris Mungall, Jie Zheng
https://github.com/geneontology/go-ontology/issues/15532
https://github.com/information-artifact-ontology/ontology-metadata/issues/32
GO ontology
scheduled for obsoletion on or after
has axiom id
Person:Alan Ruttenberg
Person:Alan Ruttenberg
A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI
has axiom label
term replaced by
Use on obsolete terms, relating the term to another term that can be used as a substitute
Person:Alan Ruttenberg
Person:Alan Ruttenberg
Add as annotation triples in the granting ontology
term replaced by
An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.
temporal interpretation
If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL
is a defining property chain axiom
If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.
is a defining property chain axiom where second argument is reflexive
is part of
my brain is part of my body (continuant parthood, two material entities)
my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
this day is part of this year (occurrent parthood)
a core relation that holds between a part and its whole
Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
part_of
BFO:0000050
plant_ontology
part_of
part_of
part of
part_of
http://www.obofoundry.org/ro/#OBO_REL:part_of
has part
my body has part my brain (continuant parthood, two material entities)
my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
this year has part this day (occurrent parthood)
a core relation that holds between a whole and its part
Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
has_part
BFO:0000051
plant_ontology
has_part
has_part
has part
has_part
realized in
this disease is realized in this disease course
this fragility is realized in this shattering
this investigator role is realized in this investigation
is realized by
realized_in
[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
realized in
realizes
this disease course realizes this disease
this investigation realizes this investigator role
this shattering realizes this fragility
to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
realizes
preceded by
The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P.
x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
is preceded by
preceded_by
http://www.obofoundry.org/ro/#OBO_REL:preceded_by
Laurel_Cooper
2013-07-09T14:29:15Z
BFO:0000062
plant_ontology
preceded_by
preceded_by
Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
preceded by
preceded_by
The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P.
POC:Laurel_Cooper
precedes
x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
Laurel_Cooper
2015-06-04T17:18:40Z
BFO:0000063
plant_ontology
precedes
precedes
precedes
precedes
occurs in
b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
occurs_in
unfolds in
unfolds_in
Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
occurs in
site of
[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant
contains process
has measurement unit label
The process of creation is, for example, writing down on paper the name of a friend by deliberately creating a certain pattern using ink.
Here the ink + paper is the independent continuant and the carrier is the pattern in the ink.
c = pattern in the ink
b = paper + ink
r = friend
c specifically denotes r =def
r is a portion of reality
& c is a particular quality
& c depends specifically on some independent continuant b
& b acquired c as the result of the achievement of an objective to enable pointing to r repeatedly.
Marked means there is a changed or additional quality of the bearer - the quality is the information carrier.
Case 1
Memory trace as mark created when reading some description of some friend. The trace can denote.
Case 2
Pattern of ink arrayed on paper as mark when writing down a friend's name
Case 3
Pattern of magnetic domains on scattered pieces of a hard disk platter as mark when saving a file.
8/6/2009 Alan Ruttenberg: The suggestions is to deprecate specific and generically denotes in favor of a single denote relationship that corresponds to the generic sense
see https://github.com/information-artifact-ontology/IAO/issues/25&q=denote
Alan Ruttenberg
Smith, Ceusters, Ruttenberg, 2000 years of philosophy
obsolete_specifically denotes
true
This document is about information artifacts and their representations
A (currently) primitive relation that relates an information artifact to an entity.
7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
person:Alan Ruttenberg
Smith, Ceusters, Ruttenberg, 2000 years of philosophy
is about
An information artifact IA mentions an entity E exactly when it has a component/part that denotes E
7/6/2009 Alan Ruttenberg. P4 RC1 munges our GCI so remove it for now: mentions some entity equivalentTo has_part some ('generically denotes' some entity)
7/6/2009 Alan Ruttenberg: Add this relation following conversation with Jonathan Rees that N&S GCI for is_about was too strong. Really it was simply sufficient. To effect this change we introduce this relation, which is subproperty of is_about, and have previous GCI use this relation "mentions" in it's (logical) definition
PERSON: Jonathan Rees
Person: Alan Ruttenberg
mentions
A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance "Alan" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between "Alan" and the person that is being named.
A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically
2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive.
g denotes r =def
r is a portion of reality
there is some c that is a concretization of g
every c that is a concretization of g specifically denotes r
person:Alan Ruttenberg
Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan
denotes
see https://github.com/information-artifact-ontology/IAO/issues/25&q=denote
obsolete_materially denotes
true
m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q
8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later
From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important]
This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.
--
From the second IAO workshop, various comments, [commented on by Alan Ruttenberg 8/6/2009]
unit of measure is a quality, e.g. the length of a ruler.
[We decided to hedge on what units of measure are, instead talking about measurement unit labels, which are the information content entities that are about whatever measurement units are. For IAO we need that information entity in any case. See the term measurement unit label]
[Some struggling with the various subflavors of is_about. We subsequently removed the relation represents, and describes until and only when we have a better theory]
a represents b means either a denotes b or a describes
describe:
a describes b means a is about b and a allows an inference of at least one quality of b
We have had a long discussion about denotes versus describes.
From the second IAO workshop: An attempt at tieing the quality to the measurement datum more carefully.
a is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality.
From the second meeting on IAO:
An attempt at defining assay using Barry's "reliability" wording
assay:
process and has_input some material entity
and has_output some information content entity
and which is such that instances of this process type reliably generate
outputs that describes the input.
This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.
Alan Ruttenberg
is quality measurement of
obsolete_describes
true
obsolete_represents
true
inverse of the relation 'denotes'
Person: Jie Zheng, Chris Stoeckert, Mike Conlon
denoted by
relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point
has coordinate unit label
relates a process to a time-measurement-datum that represents the duration of the process
Person:Alan Ruttenberg
is duration of
inverse of the relation of is quality measurement of
2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship
Person:Alan Ruttenberg
is quality measured as
A relation between a data item and a quality of a material entity where the material entity is the specified output of a material transformation which achieves an objective specification that indicates the intended value of the specified quality.
Person:Alan Ruttenberg
Person:Bjoern Peters
is quality specification of
inverse of the relation of is quality specification of
2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship
Person:Alan Ruttenberg
Person:Bjoern Peters
quality is specified as
relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken
Alan Ruttenberg
has time stamp
relates a time stamped measurement datum to the measurement datum that was measured
Alan Ruttenberg
has measurement datum
has_specified_input
has_specified_input
see is_input_of example_of_usage
A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
PERSON: Alan Ruttenberg
PERSON: Bjoern Peters
PERSON: Larry Hunter
PERSON: Melanie Coutot
has_specified_input
is_specified_input_of
has_specified_output
has_specified_output
A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
PERSON: Alan Ruttenberg
PERSON: Bjoern Peters
PERSON: Larry Hunter
PERSON: Melanie Courtot
has_specified_output
is_specified_output_of
is_specified_output_of
A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
Alan Ruttenberg
PERSON:Bjoern Peters
is_specified_output_of
inheres in
this fragility inheres in this vase
this fragility is a characteristic of this vase
this red color inheres in this apple
this red color is a characteristic of this apple
a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
A dependent inheres in its bearer at all times for which the dependent exists.
inheres_in
Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
characteristic of
inheres in
bearer of
this apple is bearer of this red color
this vase is bearer of this fragility
Inverse of characteristic_of
a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
bearer_of
is bearer of
bearer of
has characteristic
participates in
this blood clot participates in this blood coagulation
this input material (or this output material) participates in this process
this investigator participates in this investigation
a relation between a continuant and a process, in which the continuant is somehow involved in the process
participates_in
RO:0000056
plant_ontology
participates_in
participates_in
participates in
participates_in
has participant
this blood coagulation has participant this blood clot
this investigation has participant this investigator
this process has participant this input material (or this output material)
a relation between a process and a continuant, in which the continuant is somehow involved in the process
Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
has_participant
http://www.obofoundry.org/ro/#OBO_REL:has_participant
RO:0000057
plant_ontology
has_participant
has_participant
has participant
has_participant
A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.
is concretized as
A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.
concretizes
this catalysis function is a function of this enzyme
a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
function_of
is function of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
function of
this red color is a quality of this apple
a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
A quality inheres in its bearer at all times for which the quality exists.
is quality of
quality_of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
quality of
this investigator role is a role of this person
a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
is role of
role_of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
role of
this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
has_function
has function
this apple has quality this red color
a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
has_quality
has quality
this person has role this investigator role (more colloquially: this person has this role of investigator)
a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
has_role
has role
a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence
has disposition
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
disposition of
this cell derives from this parent cell (cell division)
this nucleus derives from this parent nucleus (nuclear division)
a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
derives_from
derives from
this parent cell derives into this cell (cell division)
this parent nucleus derives into this nucleus (nuclear division)
a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.
derives_into
derives into
is location of
my head is the location of my brain
this cage is the location of this rat
a relation between two independent continuants, the location and the target, in which the target is entirely within the location
Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
location_of
location of
located in
my brain is located in my head
this rat is located in this cage
a relation between two independent continuants, the target and the location, in which the target is entirely within the location
Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
located_in
http://www.obofoundry.org/ro/#OBO_REL:located_in
located in
This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.
This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.
the surface of my skin is a 2D boundary of my body
a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity
A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
2D_boundary_of
boundary of
is 2D boundary of
is boundary of
2D boundary of
my body has 2D boundary the surface of my skin
a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity
A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
has boundary
has_2D_boundary
has 2D boundary
A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
has regulatory component activity
A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
has negative regulatory component activity
A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
has positive regulatory component activity
has component activity
w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
has component process
directly regulated by
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
directly negatively regulated by
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
GOC:dos
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
directly positively regulated by
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
GOC:dos
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
has effector activity
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
GOC:dos
David Osumi-Sutherland
X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
ends after
David Osumi-Sutherland
starts_at_end_of
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
immediately preceded by
David Osumi-Sutherland
ends_at_start_of
meets
X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
immediately precedes
x overlaps y if and only if there exists some z such that x has part z and z part of y
overlaps
true
true
x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z.
RO:0002160
plant_ontology
only_in_taxon
only_in_taxon
only in taxon
only_in_taxon
x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.
in taxon
w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
has component
x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
RO:0002202
plant_ontology
develops_from
develops_from
develops from
develops_from
inverse of develops from
develops into
process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.
regulates
Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
negatively regulates
Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
positively regulates
A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
capable of
c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
capable of part of
true
true
A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
temporally related to
p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
has input
x has developmental contribution from y iff x has some part z such that z develops from y
has developmental contribution from
inverse of has developmental contribution from
developmentally contributes to
Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p
X developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p.
Laurel_Cooper
2013-06-27T13:16:56Z
RO:0002258
plant_ontology
developmentally_preceded_by
developmentally_preceded_by
developmentally preceded by
developmentally_preceded_by
X developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p.
RO:0002258
c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
acts upstream of
c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
affects
acts upstream of or within
Inverse of developmentally preceded by
developmentally succeeded by
causally upstream of, positive effect
causally upstream of, negative effect
true
true
A relationship that holds via some environmental process
evolutionarily related to
A mereological relationship or a topological relationship
mereotopologically related to
A relationship that holds between entities participating in some developmental process (GO:0032502)
developmentally related to
enables
A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
functionally related to
this relation holds between c and p when c is part of some c', and c' is capable of p.
part of structure that is capable of
true
true
c involved_in p if and only if c enables some process p', and p' is part of p
involved in
inverse of enables
enabled by
inverse of regulates
regulated by
inverse of negatively regulates
negatively regulated by
inverse of positively regulates
positively regulated by
An organism that is a member of a population of organisms
is member of is a mereological relation between a item and a collection.
is member of
member part of
SIO
member of
has member is a mereological relation between a collection and an item.
SIO
has member
inverse of has input
input of
x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).
has developmental potential involving
x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y
has potential to developmentally contribute to
x has the potential to develop into y iff x develops into y or if x is capable of developing into y
has potential to develop into
x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y
has potential to directly develop into
inverse of upstream of
causally downstream of
immediately causally downstream of
This relation groups causal relations between material entities and causal relations between processes
causally related to
p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain
causally upstream of
p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.
immediately causally upstream of
p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.
affects
causally upstream of or within
inverse of causally upstream of or within
causally downstream of or within
c involved in regulation of p if c is involved in some p' and p' regulates some p
involved in regulation of
c involved in regulation of p if c is involved in some p' and p' positively regulates some p
involved in positive regulation of
c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
involved in negative regulation of
c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
involved in or involved in regulation of
c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
enables activity in
is active in
true
true
c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
GOC:cjm
GOC:dos
A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
in pairwise interaction with
interacts with
An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
molecularly interacts with
phosphorylates
The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
molecularly controls
directly regulates activity of
The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
molecularly decreases activity of
directly negatively regulates activity of
The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
molecularly increases activity of
directly positively regulates activity of
helper property (not for use in curation)
p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
has part that occurs in
true
true
is kinase activity
A relationship between a material entity and a process where the material entity has some causal role that influences the process
causal agent in process
p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.
causal relation between processes
causal relation between entities
causally influenced by
interaction relation helper property
molecular interaction relation helper property
The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
causally influences
Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
directly regulates
s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
has part structure that is capable of
A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
causal relation between material entity and a process
Holds between c and p if and only if c is capable of some activity a, and a regulates p.
capable of regulating
Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
capable of negatively regulating
Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
capable of positively regulating
Inverse of 'causal agent in process'
process has causal agent
Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.
directly positively regulates
Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.
directly negatively regulates
Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
enables subfunction
acts upstream of or within, positive effect
acts upstream of or within, negative effect
c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
acts upstream of, positive effect
c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
acts upstream of, negative effect
causally upstream of or within, negative effect
causally upstream of or within, positive effect
The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
regulates activity of
has measurement value
has x coordinate value
has z coordinate value
has y coordinate value
A planned process in which soil is mechanicaly mixed, stirred or overturned.
incorporation process
tillage
tillage process
A planned process in which soil is mechanicaly mixed, stirred or overturned.
https://en.wikipedia.org/wiki/Tillage
https://stats.oecd.org/glossary/detail.asp?ID=447
A planned process in which the agricultural field surface is shaped for ensuring that the depths and discharge variations over the agricultural field are relatively uniform.
land levelling
land levelling process
A planned process in which the agricultural field surface is shaped for ensuring that the depths and discharge variations over the agricultural field are relatively uniform.
http://www.fao.org/docrep/t0231e/t0231e08.htm
A planned process in which the thickness of crop residue on the surface of an agricultural field is managed.
https://orcid.org/0000-0001-6284-4821
crop residue management
residue management
crop residue management process
A planned process in which the thickness of crop residue on the surface of an agricultural field is managed.
agglossary.org/wiki/index.php?title=Residue_management
A planned process in which water is artificially supplied to plant or soil to sustain plants.
irrigation
irrigation process
A planned process in which water is artificially supplied to plant or soil to sustain plants.
https://en.wikipedia.org/wiki/Irrigation
www.dictionary.com/browse/irrigation
A pruning process in which one or more suckers are removed.
desuckering process
Which suckers are removed depends on the criteria set by the agent of the desuckering process.
desuckering
A role that inheres in a water body that is realised in an irrigation process where water is transported from that water body to the target of the irrigation process.
irrigation water source role
A water body from which water is taken during an irrigation process and transported to the target of the irrigation process.
irrigation source
Volume of water applied during an irrigation process.
amount of irrigation water
irrigation depth
quantity of irrigation water
volume of irrigation water
A tillage process in which, approximately, less than 15 percent of the soil surface is covered by crop residue after planting.
conventional tillage
intensive tillage
tillage_technique
conventional tillage process
A tillage process in which, approximately, less than 15 percent of the soil surface is covered by crop residue after planting.
http://www.ctic.purdue.edu/resourcedisplay/322/
A tillage process in which between, approximately, 15 to 30 percent of the soil surface is covered by plant residue after planting.
reduced tillage
tillage_technique
reduced tillage process
A tillage process in which between, approximately, 15 to 30 percent of the soil surface is covered by plant residue after planting.
http://www.ctic.purdue.edu/resourcedisplay/322/
A tillage process in which a proportion of plant residue, left over after a harvesting process, is left relatively undisturbed on the tilled land; this is done in order to accomplish several conservation objectives including the maintenance of soil moisture content, the reduction of soil erosion and soil compaction, and/or the reduction of labour intensity and fuel consumption.
conservation tillage
tillage_technique
Usually 30 percent of soil surface covered by plant residue is neccessary to achieved conservation tillage.
conservation tillage process
A tillage process in which a proportion of plant residue, left over after a harvesting process, is left relatively undisturbed on the tilled land; this is done in order to accomplish several conservation objectives including the maintenance of soil moisture content, the reduction of soil erosion and soil compaction, and/or the reduction of labour intensity and fuel consumption.
http://www.ctic.purdue.edu/resourcedisplay/322/
https://en.wikipedia.org/wiki/Tillage
A land levelling process in which a laser guided equipement is used to shape land surface.
laser land levelling
laser land levelling process
A land levelling process in which a laser guided equipement is used to shape land surface.
http://www.knowledgebank.irri.org/ericeproduction/I.3_Land_levelling.htm
A pest control process in which physical means such as barriers, traps and handpicking, or physical conditions like high temperature, are used to control unwanted organisms.
https://orcid.org/0000-0001-6284-4821
mechanical pest control
mechanical pest control process
A pest control process in which physical means such as barriers, traps and handpicking, or physical conditions like high temperature, are used to control unwanted organisms.
http://articles.extension.org/pages/43637/what-is-mechanical-pest-control
https://en.wikipedia.org/wiki/Mechanical_pest_control
A pest control process in which organisms are employed to manage unwanted organisms.
https://orcid.org/0000-0001-6284-4821
biological control
biological pest control
biological pest control process
A pest control process in which organisms are employed to manage unwanted organisms.
https://en.wikipedia.org/wiki/Biological_pest_control
https://www.cals.ncsu.edu/course/ent425/text19/biocontrol.html
A planned process in which unwanted organisms are controlled.
pest control
pest control process
A planned process in which unwanted organisms are controlled.
https://en.wikipedia.org/wiki/Pest_control
A pest control process in which chemical is used to manage unwanted organisms.
https://orcid.org/0000-0001-6284-4821
chemical pest control
chemical pest control process
A planned process in which the useful part or parts of the plant are gathered.
https://orcid.org/0000-0001-6284-4821
harvest
harvesting
plant harvesting process
The usefulness of the part or parts of the plant depends on the criteria set by the agent of the harvesting process.
harvest process
A planned process in which the useful part or parts of the plant are gathered.
http://www.fao.org/docrep/t0522e/T0522E05.htm
A planned process in which the soil is left undisturbed apart from where the seeds or planting material are placed.
https://orcid.org/0000-0001-6284-4821
zero tillage
No-till is often considered as being a conservation tillage process.
no-till
A planned process in which the soil is left undisturbed apart from where the seeds or planting material are placed.
http://www.vellag.com/articles/no-till-agriculture/
A planned process in which selected parts of the plant are removed. The practice entails targeted removal of diseased, damaged, dead, non-productive, structurally unsound, or otherwise unwanted tissue from plants. This is done in order to shape the plant or tree, improve plant or tree health, reduce the risk from falling branches, prepare nursery specimens for transplanting, and increase the yield or quality of harvested products.
https://orcid.org/0000-0001-6284-4821
pruning
thinning process
thinning
A planned process in which selected parts of the plant are removed. The practice entails targeted removal of diseased, damaged, dead, non-productive, structurally unsound, or otherwise unwanted tissue from plants. This is done in order to shape the plant or tree, improve plant or tree health, reduce the risk from falling branches, prepare nursery specimens for transplanting, and increase the yield or quality of harvested products.
http://aims.fao.org/aos/agrovoc/c_6274
https://en.wikipedia.org/wiki/Pruning#Types_of_pruning
A tillage process in which saturated or near-saturated soil are worked into soft structureless mud, mainly for paddy rice production.
puddling
puddling process
A tillage process in which saturated or near-saturated soil are worked into soft structureless mud, mainly for paddy rice production.
https://en.wikipedia.org/wiki/Tillage
A conservation tillage process in which non-inversion tillage tools that partially incorporate surface organic material are used on the entire surface of the field.
mulch tillage
mulch-till
A conservation tillage process in which non-inversion tillage tools that partially incorporate surface organic material are used on the entire surface of the field.
http://www.nrcs.usda.gov/Internet/FSE_DOCUMENTS/nrcs143_025852.pdf
A conservation tillage process in which, in a land with permanent ridges, previous crop's residue is cleared off ridge-tops into adjacent furrows to make way for the new crop being planted on ridges.
ridge tillage
ridge-till
A conservation tillage process in which, in a land with permanent ridges, previous crop's residue is cleared off ridge-tops into adjacent furrows to make way for the new crop being planted on ridges.
http://www.mda.state.mn.us/protecting/conservation/practices/constillage.aspx
A conservation tillage process in which narrow strips are tilled where seeds will be planted, leaving the soil in between the rows untilled.
zone tillage
strip-till
A conservation tillage process in which narrow strips are tilled where seeds will be planted, leaving the soil in between the rows untilled.
https://en.wikipedia.org/wiki/Tillage
A plant anatomical entity that is defined to mean plants or parts of plant capable of and intended for producing or reproducing entire plants.
plant reproductive material
planting material
A plant anatomical entity that is defined to mean plants or parts of plant capable of and intended for producing or reproducing entire plants.
http://ec.europa.eu/dgs/health_food-safety/pressroom/docs/proposal_aphp_en.pdf
A fertilizer that is derived from animal or vegetable matter, and contains a carbon-hydrogen linkage.
Organic fertilizer is sometime defined as being derived from natural sources including non-living organism sources like rock.
organic fertilizer role
A fertilizer that is derived from animal or vegetable matter, and contains a carbon-hydrogen linkage.
http://www.newenglandisa.org/FunkHandoutsOrganicInorganicFertilizers.pdf
http://www.thefreedictionary.com/organic+fertilizer
https://en.wikipedia.org/wiki/Organic_fertilizer
Organic fertilizer is sometime defined as being derived from natural sources including non-living organism sources like rock.
http://www.ext.colostate.edu/mg/gardennotes/234.html
A role that inheres in an organism that is realized in an agricultural process where the organism is unwanted.
pest role
A plan specification which describes how a material entity is applied to another material entity.
fertilizer application technique
pesticide application technique
fertilizer application method
application method
An application method in which a liquid material entity is applied by aircraft to an area.
aerial topdressing
crop dusting
aerial application
An application method in which a liquid material entity is applied by aircraft to an area.
http://agritech.tnau.ac.in/agriculture/agri_nutrientmgt_methodsoffertilizerappln.html
https://en.wikipedia.org/wiki/Aerial_application
https://prod.nrcs.usda.gov/Internet/FSE_DOCUMENTS/nrcs144p2_030755.pdf
An application method in which a material entity is applied in bands below, above, on one side, or on both sides of seeds or seedlings at planting.
banding
band application
An application method in which a material entity is applied in bands below, above, on one side, or on both sides of seeds or seedlings at planting.
http://www.cals.uidaho.edu/edcomm/pdf/cis/cis0757.pdf
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%209.pdf
http://www.nasda.org/File.aspx?id=30530
A band application in which the material entity is applied after seeding or planting.
sidedress application
side dressing
A band application in which the material entity is applied after seeding or planting.
http://www.cals.uidaho.edu/edcomm/pdf/cis/cis0757.pdf
An application method which specifies how a material entity is to be uniformly applied to an area.
broadcasting
broadcast application method
An application method which specifies how a material entity is to be uniformly applied to an area.
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%209.pdf
http://www.nasda.org/File.aspx?id=30530
A broadcast application in which fertilizer is applied to an area before planting or before seedling emergence.
fertilizer basal application
A broadcast application in which fertilizer is applied to an area before planting or before seedling emergence.
http://www.fao.org/ag/Agp/agpc/doc/tibetmanual/04_Mineral_nutrition.htm
A broadcast application in which a material entity is applied to an area after seedling emergence and establishment of plants.
topdress application
top dressing
A broadcast application in which a material entity is applied to an area after seedling emergence and establishment of plants.
http://www.fao.org/ag/Agp/agpc/doc/tibetmanual/04_Mineral_nutrition.htm
An application method in which a chemical entity is applied to the lower portions of plant stems or tree trunks just above the soil line.
chemical basal application
An application method in which a chemical entity is applied to the lower portions of plant stems or tree trunks just above the soil line.
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%209.pdf
An application method in which a water-soluble chemical is injected into water flowing through an irrigation system.
chemigation
An application method in which a water-soluble chemical is injected into water flowing through an irrigation system.
https://www.ag.ndsu.edu/irrigation/chemigation
An application method in which a material entity is applied at the time of sowing, and placed in contact with seeds.
combined drilling
drill placement
on the seed application
placed with seed application
pop-up application
seed placement
contact placement
An application method in which a material entity is applied at the time of sowing, and placed in contact with seeds.
http://agriinfo.in/?page=topic&superid=1&topicid=364
http://agritech.tnau.ac.in/agriculture/agri_nutrientmgt_methodsoffertilizerappln.html
http://www.agprofessional.com/resource-centers/crop-fertility/micronutrients/news/Pop-up-fertilizers-What-you-need-to-know-254954281.html
http://www.cals.uidaho.edu/edcomm/pdf/cis/cis0757.pdf
An application method in which the material entity is placed in the reduced soil layer.
subsurface placement
The material entity is often compacted into pellet or briquette before being placed into the soil.
The reduction soil layer is usually localized around 5 to 10 cm under the soil surface.
This application method is often used in paddy field.
deep placement
An application method in which a water-soluble fertilizer is injected into water flowing through an irrigation system.
fertigation
An application method in which a water-soluble fertilizer is injected into water flowing through an irrigation system.
https://en.wikipedia.org/wiki/Fertigation
An application method in which a liquid material entity is sprayed to the leafy portions of a plant.
foliar spray
foliar application
An application method in which a liquid material entity is sprayed to the leafy portions of a plant.
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%209.pdf
An application method in which the material entity is placed in a continuous band on the bottom of the furrow during the process of ploughing. Each band is covered as the next furrow is turned. The aim is to place the material entity in moist soil where it can become more available to growing plants.
plough sole placement
An application method in which the material entity is placed in a continuous band on the bottom of the furrow during the process of ploughing. Each band is covered as the next furrow is turned. The aim is to place the material entity in moist soil where it can become more available to growing plants.
https://books.google.fr/books?id=pZ0rVya6CW4C&pg=PA156&lpg=PA156&dq=Broadcast+incorporated+plough+sole+placement&source=bl&ots=89TNkPz-j-&sig=a59lhwk5TaKrRROry3ImNW6zhDE&hl=en&sa=X&ved=0ahUKEwjggPWP1anNAhXGWBoKHReIAGkQ6AEITDAJ#v=onepage&q&f=false
An application method in which a liquid material entity is conveyed from a reservoir to a rope or wick that is wiped into unwanted plants.
rope-wick treatment
wiper treatment
rope-wick application
An application method in which a liquid material entity is conveyed from a reservoir to a rope or wick that is wiped into unwanted plants.
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%209.pdf
http://www.google.com/patents/US4219964
An application method in which a material entity is appplied directly on seeds before seeding.
seed treatment
seed dressing
An application method in which a material entity is appplied directly on seeds before seeding.
https://en.wikipedia.org/wiki/Seed_treatment
An application method in which a material entity is injected under pressure beneath the soil surface.
soil injection
An application method in which a material entity is injected under pressure beneath the soil surface.
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%209.pdf
An application method in which a material entity is injected under the bark of trees.
tree injection
An application method in which a material entity is injected under the bark of trees.
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%209.pdf
A plan specification which describes how water is applied to plants or soil.
irrigation method
An irrigation process in which water is distributed under low pressure through a piped network, and is applied as a small discharge to each plant or adjacent to it.
https://orcid.org/0000-0001-6284-4821
localized irrigation
localized irrigation process
An irrigation process in which water is distributed under low pressure through a piped network, and is applied as a small discharge to each plant or adjacent to it.
https://en.wikipedia.org/wiki/Irrigation
A localized irrigation process in which water is conveyed under pressure through a pipe system where it drips slowly onto the soil close to the plants.
drip irrigation
micro irrigation
trickle irrigation
drip irrigation process
A localized irrigation process in which water is conveyed under pressure through a pipe system where it drips slowly onto the soil close to the plants.
http://www.fao.org/docrep/s8684E/s8684e02.htm
A localized irrigation process in which water is distributed by diffusion and capillary action through the wall of buried unglazed clay pot.
https://orcid.org/0000-0001-6284-4821
pitcher irrigation
pitcher irrigation process
A localized irrigation process in which water is distributed by diffusion and capillary action through the wall of buried unglazed clay pot.
http://forest.mtu.edu/pcforestry/resources/studentprojects/pitcher/
A localized irrigation process in which water is conveyed under pressure through a buried pipe system where it drips slowly below the soil surface close to plants' roots.
https://orcid.org/0000-0001-6284-4821
SDI
subsurface drip irrigation
subsurface drip irrigation process
A localized irrigation process in which water is conveyed under pressure through a buried pipe system where it drips slowly below the soil surface close to plants' roots.
http://ag.arizona.edu/crop/irrigation/azdrip/SDI.htm
http://www.sswm.info/category/implementation-tools/water-use/hardware/optimisation-water-use-agriculture/subsurface-irrig
An irrigation process in which water is distributed through a buried piped network with a layer of geotextile on top. Geotextiles absorb the water from the drippers of the piped network and transport that water under the soil surface via mass flow and capillary action.
https://orcid.org/0000-0001-6284-4821
SSTI
subsurface textile irrigation
subsurface textile irrigation process
An irrigation process in which water is distributed through a buried piped network with a layer of geotextile on top. Geotextiles absorb the water from the drippers of the piped network and transport that water under the soil surface via mass flow and capillary action.
http://america.pink/subsurface-textile-irrigation_4206598.html
https://en.wikipedia.org/wiki/Subsurface_textile_irrigation
An irrigation process in which water is distributed through a system of pipes, and is sprayed into the air through sprinklers so that it breaks up into small water drops which fall to the ground.
https://orcid.org/0000-0001-6284-4821
irrigation with sprinkler
sprinkler irrigation process
An irrigation process in which water is distributed through a system of pipes, and is sprayed into the air through sprinklers so that it breaks up into small water drops which fall to the ground.
www.fao.org/docrep/s8684e/s8684e06.htm
A sprinkler irrigation process in which water is dispersed through a long, segmented arm that revolves around a pivot point and covers a circular area.
https://orcid.org/0000-0001-6284-4821
center-pivot irrigation
central pivot irrigation
circle irrigation
waterwheel irrigation
center-pivot irrigation process
A sprinkler irrigation process in which water is dispersed through a long, segmented arm that revolves around a pivot point and covers a circular area.
http://www.dictionary.com/browse/center-pivot-irrigation
https://en.wikipedia.org/wiki/Center_pivot_irrigation
An irrigation process in which water is delivered to the plant root zone from below the soil surface.
https://orcid.org/0000-0001-6284-4821
seepage irrigation
sub-irrigation
subground irrigation process
subsurface irrigation
sub-irrigation process
An irrigation process in which water is delivered to the plant root zone from below the soil surface.
https://en.wikipedia.org/wiki/Subirrigation
An irrigation process in which water is applied and distributed over the soil surface by gravity.
https://orcid.org/0000-0001-6284-4821
surface irrigation
surface irrigation process
An irrigation process in which water is applied and distributed over the soil surface by gravity.
https://en.wikipedia.org/wiki/Surface_irrigation
A surface irrigation process in which water is applied into basins. Basins are flat areas of land surronded by low bunds.
https://orcid.org/0000-0001-6284-4821
bassin irrigation
Basin irrigation is suitable for crops that are unaffected by standing in water for long periods (e.g. 12-24 hours) like rice or some trees.
bassin irrigation process
A surface irrigation process in which water is applied into basins. Basins are flat areas of land surronded by low bunds.
http://www.fao.org/docrep/s8684E/s8684e02.htm
A bassin irrigation process in which basins are flooded during the entire growing season of plants.
coutinuous flooding
paddy irrigation
continuous flood process
A bassin irrigation process in which basins are flooded during the entire growing season of plants.
http://www.knowledgebank.irri.org/step-by-step-production/growth/water-management
A surface irrigation process in which water is distributed to an area divided into borders. Borders are long, sloping strips of land separated by bunds. Water is applied to the top end of borders.
https://orcid.org/0000-0001-6284-4821
bay irrigation
border check irrigation
border irrigation
border strip irrigation
Borders are typically longer and narrower compared to basin irrigation.
border irrigation process
A surface irrigation process in which water is distributed to an area divided into borders. Borders are long, sloping strips of land separated by bunds. Water is applied to the top end of borders.
http://www.fao.org/docrep/s8684E/s8684e02.htm
https://en.wikipedia.org/wiki/Surface_irrigation
A surface irrigation process in which water is carried into small channels called furrows down the land slope between the plant rows. Water is applied to the top end of each furrow and infiltrates into the soil as it moves along the slope channel.
https://orcid.org/0000-0001-6284-4821
furrow irrigation
furrow irrigation process
A surface irrigation process in which water is carried into small channels called furrows down the land slope between the plant rows. Water is applied to the top end of each furrow and infiltrates into the soil as it moves along the slope channel.
http://www.fao.org/docrep/T0231E/t0231e04.htm
http://www.fao.org/docrep/s8684E/s8684e02.htm
https://en.wikipedia.org/wiki/Surface_irrigation
A surface irrigation process in which water is spread over a flat area without control over water flow or prior preparation.
https://orcid.org/0000-0001-6284-4821
uncontrolled flooding
wild flooding
uncontrolled flooding process
A surface irrigation process in which water is spread over a flat area without control over water flow or prior preparation.
http://www.fao.org/docrep/T0231E/t0231e04.htm
https://books.google.fr/books?id=DSvFRbtmb9EC&pg=PA66&lpg=PA66&dq=uncontrolled+flooding+irrigation&source=bl&ots=GZ1pAtoBYD&sig=SU-vFWGW5bKfmMr5q5ppV-6G-Wk&hl=en&sa=X&sqi=2&ved=0ahUKEwjKibDIz6zNAhWGSBQKHa38ANgQ6AEIVTAM#v=onepage&q=uncontrolled%20flooding%20irrigation&f=false
https://irrigationmethods.wordpress.com/
A role that inheres in an organism that is realised in a pest control process where that organism is used to suppress unwanted organisms.
biological pest control agent role
A role that inheres in an environmental material that is realised in a land preparation process where that environmental material is applied to soil in order to neutralize soil acidity.
liming role
Plants that are grown to be tilled, or cut down to lay on top of the ground for the purpose of adding organic matter and nutrients to the soil.
green manure
Plants that are grown to be tilled, or cut down to lay on top of the ground for the purpose of adding organic matter and nutrients to the soil.
http://www.manytracks.com/Garden/GreenManure.htm
https://en.wikipedia.org/wiki/Green_manure
Animal manure that contains plant material, which has been used as bedding for animals and has absorbed the feces and urine.
FYM
barnyard manure
farmyard manure
Animal manure that contains plant material, which has been used as bedding for animals and has absorbed the feces and urine.
https://en.wikipedia.org/wiki/Manure
An animal manure made of animal feces and urine with no or very little material used for animal bedding.
slurry manure
farm slurry
An animal manure made of animal feces and urine with no or very little material used for animal bedding.
http://articles.extension.org/pages/8920/slurry-manure-collection-and-handling-systems
An animal manure made of animal urine and sometimes waste water.
liquid manure
Organic matter mostly derived from animal feces which can be used as organic fertilizer in agriculture.
https://orcid.org/0000-0002-8213-0815
The excreta of animals, with or without an admixture of bedding or litter, fresh or at various stages of further decomposition or composting.
animal manure
Organic matter mostly derived from animal feces which can be used as organic fertilizer in agriculture.
https://en.wikipedia.org/wiki/Manure
The excreta of animals, with or without an admixture of bedding or litter, fresh or at various stages of further decomposition or composting.
https://www.soils.org/publications/soils-glossary
An animal manure that contains poultry excreta, spilled feed, feathers, and material used as bedding in poultry operations.
broiler litter
chicken litter
poultry manure
poultry litter
An animal manure that contains poultry excreta, spilled feed, feathers, and material used as bedding in poultry operations.
https://en.wikipedia.org/wiki/Poultry_litter#Litter_amendments
An animal manure that contains solid waste from fishes often originateing from aquaculture operations.
fish manure
An animal manure that contains solid waste from fishes often originateing from aquaculture operations.
http://www.collinsdictionary.com/dictionary/english/fish-manure
https://www.fishnure.com/about-us/
An animal manure that is produced from ground-up whole fish or by-products mixed with water, and heated to remove oils and proteins.
fish emulsion
An animal manure that is produced from ground-up whole fish or by-products mixed with water, and heated to remove oils and proteins.
http://organicgardening.about.com/od/organicgardeningglossary/g/fishemulsion.htm
https://en.wikipedia.org/wiki/Fish_emulsion
https://en.wikipedia.org/wiki/Fish_hydrolysate
An animal manure obtained by drying and grinding or otherwise treating fish or fish waste to which no other matter has been added.
fish blood and bone
fish meal
An animal manure obtained by drying and grinding or otherwise treating fish or fish waste to which no other matter has been added.
http://www.fao.org/wairdocs/tan/x5926e/x5926e01.htm
An animal manure made from whole fish or by-products put into water and cold-ground up.
fish hydrolysate
An animal manure made from whole fish or by-products put into water and cold-ground up.
https://en.wikipedia.org/wiki/Fish_hydrolysate
The biomass remaining after pressing oil seeds to extract oil.
oil cake
The biomass remaining after pressing oil seeds to extract oil.
https://en.wikipedia.org/wiki/Press_cake
Dry, inert powder made from blood. Blood usually comes from cattle or hogs as a slaughterhouse by-product.
blood meal
Dry, inert powder made from blood. Blood usually comes from cattle or hogs as a slaughterhouse by-product.
https://en.wikipedia.org/wiki/Blood_meal
The biomass remaining after sugarcane stalks are crushed to extract their juice.
obsolete bagasse
true
The biomass remaining after sugarcane stalks are crushed to extract their juice.
https://en.wikipedia.org/wiki/Bagasse
An agricultural environmental material that contains ground-biomass remaining after pressing oil seeds.
ground oil cake
oil meal
An oil meal that contains crushed cotton seeds from which oil has been removed.
cottonseed meal
An oil meal that contains crushed cotton seeds from which oil has been removed.
https://en.wikipedia.org/wiki/Cottonseed_meal
An agricultural environmental material that contains ground dry alfalfa.
alfalfa meal
An agricultural environmental material that contains ground dry alfalfa.
http://www.feedipedia.org/node/275
A compost that contains the residual compost waste generated by mushroom production. It generally consists of a combination of wheat straw, dried blood, horse manure and ground chalk, composted together.
spent mushroom compost
A compost that contains the residual compost waste generated by mushroom production. It generally consists of a combination of wheat straw, dried blood, horse manure and ground chalk, composted together.
https://en.wikipedia.org/wiki/Spent_mushroom_compost
Layer of material applied to the soil surface to conserve moisture, improve soil fertility, reduce weed growth, or enhance the visual appeal of the area.
mulch
Layer of material applied to the soil surface to conserve moisture, improve soil fertility, reduce weed growth, or enhance the visual appeal of the area.
https://en.wikipedia.org/wiki/Mulch
A mulch where plastic sheet is used to cover soil surface. Plants grow through slits or holes in thin plastic sheeting.
plastic mulch
A mulch where plastic sheet is used to cover soil surface. Plants grow through slits or holes in thin plastic sheeting.
https://en.wikipedia.org/wiki/Mulch
A mulch where textile material is used to covert the soil surface. The fabric itself can be made from synthetic or organic materials, sometimes from recycled sources.
landscape fabric
A mulch where textile material is used to covert the soil surface. The fabric itself can be made from synthetic or organic materials, sometimes from recycled sources.
https://en.wikipedia.org/wiki/Landscape_fabric
A mulch where shredded or entire piece of paper or newspaper cover the soil surface.
newspaper mulch
paper mulch
A mulch where lawn waste resulting from mowing are used to cover the soil surface.
grass clippings mulch
A mulch where lawn waste resulting from mowing are used to cover the soil surface.
http://www.ext.colostate.edu/mg/gardennotes/715.html
A mulch where pine needles are used to cover soil surface.
pine straw mulch
pine needles mulch
A mulch where pine needles are used to cover soil surface.
http://www.gardening.cornell.edu/factsheets/mulch/mulchland.html#wood
A mulch where straw is used to cover soil surface.
straw mulch
A mulch where straw is used to cover soil surface.
http://www.gardening.cornell.edu/factsheets/mulch/mulchland.html#wood
A mulch where foil is used to cover soil surface.
aluminum mulch
A mulch where stones are used to cover soil surface.
stone mulch
A mulch where tree leaves are used to cover soil surface.
leave mulch
A mulch where compost is used to cover soil surface.
compost mulch
A mulch where wood chips are used to cover soil surface. Wood chips are a byproduct of the pruning of trees.
wood chips mulch
A mulch where wood chips are used to cover soil surface. Wood chips are a byproduct of the pruning of trees.
http://www.gardening.cornell.edu/factsheets/mulch/mulchland.html#wood
A mulch where the outer corky bark layer of timber trees, shredded or not, are used to cover soil surface.
bark mulch
A mulch where the outer corky bark layer of timber trees, shredded or not, are used to cover soil surface.
https://en.wikipedia.org/wiki/Mulch#Bark_chips
A biological pest control process in which organisms that will help to manage pests are introduced to a new locale where they do not occur naturally.
classical biological pest control
importation
organisms importation process
A biological pest control process in which organisms that will help to manage pests are introduced to a new locale where they do not occur naturally.
https://en.wikipedia.org/wiki/Biological_pest_control#Importation
A biological pest control process in which organisms that help to manage pests are released to boost the naturally occurring population.
augmentation
organisms augmentation process
A biological pest control process in which organisms that help to manage pests are released to boost the naturally occurring population.
https://en.wikipedia.org/wiki/Biological_pest_control#Importation
A biological pest control process in which suitable habitat or food are provided to the naturally occurring population of organisms that help to manage pests.
conservation
organisms conservation process
A biological pest control process in which suitable habitat or food are provided to the naturally occurring population of organisms that help to manage pests.
https://en.wikipedia.org/wiki/Biological_pest_control#Importation
A mechanical pest control process in which pests are killed.
https://orcid.org/0000-0001-6284-4821
destruction technique
mechanical pest destruction process
A mechanical pest control process in which pests are kept away.
https://orcid.org/0000-0001-6284-4821
exclusion technique
mechanical pest exclusion process
A mechanical pest control process in which pests are removed without being killed.
https://orcid.org/0000-0001-6284-4821
removal technique
mechanical pest removal process
A planned process in which a layer of material is apply to the soil surface to conserve moisture, improve soil fertility, reduce pests population and enhance the visual appeal of the area.
https://orcid.org/0000-0001-6284-4821
https://en.wikipedia.org/wiki/Mulch
mulch management
mulching
mulching process
A planned process in which a liming material is applied to soil to reduce acidity.
https://orcid.org/0000-0001-6284-4821
liming
liming process
A planned process in which a liming material is applied to soil to reduce acidity.
https://en.wikipedia.org/wiki/Liming
Seed soaked in water until the physical process of germination, the penetration of the root though the seed coat, has occurred.
wet seed
pregerminated seed
Piece of a plant, often piece of the stem or root, that is used for vegetative propagation.
plant cutting
Piece of a plant, often piece of the stem or root, that is used for vegetative propagation.
https://en.wikipedia.org/wiki/Cutting_(plant)
A shoot of a perennial plant.
ratoon
A shoot of a perennial plant.
http://www.merriam-webster.com/dictionary/ratoon
Organism used to pull agricultural implements.
draught animal
working animal
draft animal
obsolete horse
true
obsolete donkey
true
ox
steer
obsolete bull
true
obsolete camel
true
obsolete mule
true
obsolete buffalo
true
obsolete elephant
true
A mobile machine specifically designed to deliver a high tractive effort at slow speeds, and mainly used for the purposes of hauling a trailer or machinery used in agriculture or construction.
https://orcid.org/0000-0001-6284-4821
tractor
A mobile machine specifically designed to deliver a high tractive effort at slow speeds, and mainly used for the purposes of hauling a trailer or machinery used in agriculture or construction.
https://en.wikipedia.org/wiki/Tractor
A tractor with one axle, self-powered and self-propelled. The operator usually walks behind it or rides the implement being towed.
https://orcid.org/0000-0001-6284-4821
two-wheel tractor
walking tractor
single-axle tractor
A tractor with one axle, self-powered and self-propelled. The operator usually walks behind it or rides the implement being towed.
https://en.wikipedia.org/wiki/Two-wheel_tractor
A tractor with two axles. Agricultural implements may be towed behind or mounted on the tractor, and the tractor may also provide a source of power if the implement is mechanized.
https://orcid.org/0000-0001-6284-4821
four-wheel tractor
two-axle tractor
A tractor with two axles. Agricultural implements may be towed behind or mounted on the tractor, and the tractor may also provide a source of power if the implement is mechanized.
https://en.wikipedia.org/wiki/Tractor#Tractor_configurations
A roller armed with blunt spikes for dragging over newly plowed land to break the clods and render it fit for seeding.
https://orcid.org/0000-0001-6284-4821
clod crusher
A roller armed with blunt spikes for dragging over newly plowed land to break the clods and render it fit for seeding.
https://www.wordnik.com/words/clod-crusher
An implement that consists of many carbon steel or boron discs, which have many varying concavities and disc blade sizes and spacing and which are arranged into two or four sections. It is used to till the soil where crops are to be planted. It is also used to chop up unwanted weeds or crop remainders.
https://orcid.org/0000-0001-6284-4821
bladed harrow
disc plough
disc harrow
An implement that consists of many carbon steel or boron discs, which have many varying concavities and disc blade sizes and spacing and which are arranged into two or four sections. It is used to till the soil where crops are to be planted. It is also used to chop up unwanted weeds or crop remainders.
https://en.wikipedia.org/wiki/Disc_harrow
An implement that cut, lift and reverse soil with a cutting depth of approximately 15 cm.
https://orcid.org/0000-0001-6284-4821
frame-plough
moldboard plow
mouldboard
turnplough
mouldboard plough
An implement that cut, lift and reverse soil with a cutting depth of approximately 15 cm.
http://lambangjaya.com/product/detail/mouldboard-plough.html
An implement that typically has only one thin blade with a sharpened tip, and is used to loosen and break up soil at depths about 30 cm.
https://orcid.org/0000-0001-6284-4821
flat lifter
mole plough
subsoiler
An implement that loosen and aerate soil without inverting or turning it.
https://orcid.org/0000-0001-6284-4821
chisel plough
An implement that loosen and aerate soil without inverting or turning it.
http://minosagri.com/chisel-plough
An implement that is used for plants, such as potatoes or scallions, which are grown buried in ridges of soil. A ridging plough has two mouldboards facing away from each other, cutting a deep furrow on each pass, with high ridges either side.
https://orcid.org/0000-0001-6284-4821
ridging plough
An implement that is used for plants, such as potatoes or scallions, which are grown buried in ridges of soil. A ridging plough has two mouldboards facing away from each other, cutting a deep furrow on each pass, with high ridges either side.
https://en.wikipedia.org/wiki/Plough
An implement that is designed to cut the soil and turn it on its side, minimizing the damage to the earthworms, soil microorganism, and fungi.
https://orcid.org/0000-0001-6284-4821
need a more precise definition
spade plough
An implement that is designed to cut the soil and turn it on its side, minimizing the damage to the earthworms, soil microorganism, and fungi.
https://en.wikipedia.org/wiki/Plough#Spade_plough
Board used in field with a total water coverage to shape field surface. Weight can be added to the board.
leveling board
levelling board
Bucket dragged by animal or tractor to shape soil surface. Bucket dimensions and capacity vary according to the available power source and field conditions.
drag bucket
drag scraper
leveling bucket
levelling bucket
Bucket dragged by animal or tractor to shape soil surface. Bucket dimensions and capacity vary according to the available power source and field conditions.
https://www.researchgate.net/publication/267641740_Laser_Guided_Land_Leveling_and_Grading_for_Precision_Farming
A bucket tracted by a tractor and controlled by a laser to shape soil surface. A laser transmitter transmits a laser beam, which is intercepted by the laser receiver mounted on the leveling bucket. The control panel mounted on the tractor interprets the signal from the receiver and raises or lowers the bucket.
laser-controlled bucket
A bucket tracted by a tractor and controlled by a laser to shape soil surface. A laser transmitter transmits a laser beam, which is intercepted by the laser receiver mounted on the leveling bucket. The control panel mounted on the tractor interprets the signal from the receiver and raises or lowers the bucket.
http://www.knowledgebank.irri.org/ericeproduction/I.3_Land_levelling.htm
An implement consisting of a heavy framework having high numbers of steel tines on an harrow mat.
https://orcid.org/0000-0001-6284-4821
drag harrow
harrow
chain harrow
An implement consisting of a heavy framework having high numbers of steel tines on an harrow mat.
http://www.drag-harrow.com/
https://www.wordnik.com/words/harrow
An implement consisting of a heavy framework having several spikes or tines, and dragged by an animal or a tractor.
drag harrow
harrow
tine harrow
An implement consisting of a heavy framework having several spikes or tines, and dragged by an animal or a tractor.
http://www.drag-harrow.com/
https://www.wordnik.com/words/harrow
An implement used to distribute manure over a field. It usually consists of a trailer towed behind a tractor with a rotating mechanism driven by the tractor's power take off.
https://orcid.org/0000-0001-6284-4821
honey wagon
muck spreader
manure spreader
An implement used to distribute manure over a field. It usually consists of a trailer towed behind a tractor with a rotating mechanism driven by the tractor's power take off.
https://en.wikipedia.org/wiki/Manure_spreader
An implement designed to inject slurry into the soil.
https://orcid.org/0000-0001-6284-4821
slurry injector
An implement designed to inject slurry into the soil.
http://www.pichonindustries.com/slurry-tanker/spreading/injectors
An implement that consists of a hopper, a metering unit, and a distribution device that uses centrifugal force to spread material like seeds, fertilizer granules, liming material, onto the soil surface.
https://orcid.org/0000-0001-6284-4821
broadcast seeder
centrifugal fertilizer spreader
broadcast spreader
An implement that consists of a hopper, a metering unit, and a distribution device that uses centrifugal force to spread material like seeds, fertilizer granules, liming material, onto the soil surface.
http://www.lsuagcenter.com/NR/rdonlyres/D9458BB7-D852-40B4-B434-5A6FC0C43E0E/3925/B868.pdf
A planned process in which seeds are applied on or into the soil.
crop establishement
direct seeding
seeding
sowing
sowing process
seeding process
A planned process in which seeds are applied on or into the soil.
https://en.wikipedia.org/wiki/Sowing
direct seeding
http://www.cropsreview.com/methods-of-planting.html
An implement that is used to spray liquid and that is fitted with a harness on the operator back.
https://orcid.org/0000-0001-6284-4821
knapsack sprayer
backpack sprayer
An implement that is used to spray liquid and is held in the hand. It usually has an air pump which compresses air into the tanks and pressurizes the liquid to spray.
https://orcid.org/0000-0001-6284-4821
hand sprayer
An implement that is used to spray liquid and is held in the hand. It usually has an air pump which compresses air into the tanks and pressurizes the liquid to spray.
https://www.google.com/patents/US8420070
An implement that uses a combination of air and liquid to deliver liquid material to the target. It includes include nozzles that deliver spray droplets directly into a high-speed airstream. The air blast shatters the drops of liquid material into fine droplets and transports them to the target.
https://orcid.org/0000-0001-6284-4821
airblast sprayer
An implement which is used to create well-defined grooves in the soil where some material like seeds or fertilizer can be placed at a proper depth.
https://orcid.org/0000-0001-6284-4821
furrow opener
An area density quality which inheres in liming material by virtue of some influence exerted by the mass of liming material applied on a given surface area.
liming material area density
Plant material remaining on the field ground after harvesting, including leaves, stalks, roots.
crop residue description
crop residue
Plant material remaining on the field ground after harvesting, including leaves, stalks, roots.
https://stats.oecd.org/glossary/detail.asp?ID=480
Two or more crop plants planted in a line.
row
A site which is located between two rows of crop plants.
interrow
An area density quality which inheres in nitrogen by virtue of some influence exerted by the mass of nitrogen applied in a given surface area.
amount of N applied per area
amount of nitrogen applied
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
nitrogen area density
An area density quality which inheres in phosphorus by virtue of some influence exerted by the mass of phosphorus applied in a given surface area.
amount of P applied per area
phosphorus total amount
quantity of phosphorus applied
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
phosphorus area density
Object with a tube shape used to carry irrigation water through the field
https://orcid.org/0000-0001-6284-4821
irrigation tube
An area density quality which inheres in sulfur by virtue of some influence exerted by the mass of sulfur applied in a given surface area.
amount of sulfur applied on a surface
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
sulfur area density
An area density quality which inheres in chemical pest control material by virtue of some influence exerted by the mass of chemical pest control material applied in a given surface area.
chemical pest control material area density
pesticide application rate
pesticide area density
An area density quality which inheres in nitrate by virtue of some influence exerted by the mass of nitrate applied in a given surface area.
amont of nitrate applied
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
nitrate area density
An area density quality which inheres in ammonium by virtue of some influence exerted by the mass of ammonium applied in a given surface area.
amount of ammonium applied
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium area density
An area density quality which inheres in calcium by virtue of some influence exerted by the mass of calcium applied in a given surface area.
amount of Ca applied per area
amount of calcium applied
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
calcium area density
An area density quality which inheres in magnesium by virtue of some influence exerted by the mass of magnesium applied in a given surface area.
amount of magnesium applied
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
magnesium area density
An area density quality which inheres in iron by virtue of some influence exerted by the mass of iron applied in a given surface area.
amount of iron applied
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
iron area density
An area density quality which inheres in zinc by virtue of some influence exerted by the mass of zinc applied in a given surface area.
amount of Zn applied per area
amount of zinc applied on a surface
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
zinc area density
An area density quality which inheres in copper by virtue of some influence exerted by the mass of copper applied in a given surface area.
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
copper area density
An area density quality which inheres in boron by virtue of some influence exerted by the mass of boron applied in a given surface area.
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
boron area density
An area density quality which inheres in molybdenum by virtue of some influence exerted by the mass of molybdenum applied in a given surface area.
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
molybdenum area density
An area density quality which inheres in manganese by virtue of some influence exerted by the mass of manganese applied in a given surface area.
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
manganese area density
An area density quality which inheres in chlorine by virtue of some influence exerted by the mass of chlorine applied in a given surface area.
amount of chlorine applied on a surface
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
chlorine area density
A length quality which is equal to the length of the tillage tool that penetrate into the soil.
tillage depth
tillage tool blade length
A thickness quality which is equal to the distance betwenn the top of the mulch layer to the top of the soil layer.
mulch thickness
The color of a mulch
mulch color
Small earth embankment which contain irrigation water within basins.
dyke
levee
ridge
bund
Small earth embankment which contain irrigation water within basins.
http://www.fao.org/docrep/s8684E/s8684e03.htm
An environmental material containing calcium and/or magnesium compounds and applied to soil in order to neutralize soil acidity.
liming material
An environmental material containing calcium and/or magnesium compounds and applied to soil in order to neutralize soil acidity.
http://www.extension.umn.edu/agriculture/nutrient-management/nutrient-lime-guidelines/liming-materials-for-minnesota-soils/
Form of overhead sprinkler irrigation consisting of several segments of pipe joined together and supported by trusses, mounted on wheeled towers with sprinklers positioned along its length. The machine moves in a circular pattern and is fed with water from the pivot point at the center of the circle.
https://orcid.org/0000-0001-6284-4821
central pivot irrigation machine
circle irrigation machine
waterwheel irrigation machine
center pivot irrigation machine
Form of overhead sprinkler irrigation consisting of several segments of pipe joined together and supported by trusses, mounted on wheeled towers with sprinklers positioned along its length. The machine moves in a circular pattern and is fed with water from the pivot point at the center of the circle.
https://en.wikipedia.org/wiki/Center_pivot_irrigation
Hydrological process in which water move through soil and permeable rocks.
percolation process in soil
Hydrological process in which water move through soil and permeable rocks.
http://kula.geol.wwu.edu/rjmitch/L8_soils_percolation.pdf
https://en.wikipedia.org/wiki/Percolation
Mass of fertilizer applied on a given surface area.
fertilizer amount
amount of fertilizer applied
fertilizer application rate
fertilizer quantity applied
fertilizer area density
An area density quality which inheres in potassium by virtue of some influence exerted by the mass of potassium applied in a given surface area.
amount of K applied per area
amount of potassium applied on a surface
Generated equivalence by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
potassium area density
The area density of a seed
amount of seeds used
seeding area density
sowing rate
Mass of the seeds sown on a given surface area.
seeding rate
A pest control process in wich extremely hot temperature are used to kill pest.
heat treatment
An area density quality which inheres in plant reproductive material by virtue of some influence exerted by the mass of plant reproductive material planted in a given surface area.
plant reproductive material area density
planting rate
A pest control process in which extremely cold temperature are used to kill pest.
cold treatment
A mechanical pest control process in which the area being treated against pest is saturated with water at a depth of 15 to 30 cm for a period of 3 to 8 weeks.
flood treatment
A mulchin process in which the soil is covered with a layer of clear or black plastic. The plastic that is covering the ground traps heat energy from the sun and raises the temperature of the soil preventing the growth of or killing the plants.
soil solarization treatment
A mulchin process in which the soil is covered with a layer of clear or black plastic. The plastic that is covering the ground traps heat energy from the sun and raises the temperature of the soil preventing the growth of or killing the plants.
https://en.wikipedia.org/wiki/Soil_solarization
A mechanical pest control process in which pest or area with pest are directly burned and flamed.
fire treatment
A mechanical pest control process in which steam is used to kill pest.
steam treatment
A mechanical pest process in which diatomaceous earth is used to kill pest. Diatomaceous earth is composed of finely ground skeletons of fossil diatoms. Sharp edges of the ground diatoms scratch the waxy or oily outer layer of soft-bodied insects, which die eventually from dehydration.
diatomaceous earth spreading
A mechanical pest process in which diatomaceous earth is used to kill pest. Diatomaceous earth is composed of finely ground skeletons of fossil diatoms. Sharp edges of the ground diatoms scratch the waxy or oily outer layer of soft-bodied insects, which die eventually from dehydration.
https://en.wikipedia.org/wiki/Diatomaceous_earth
A crop residue management process in which crop residues are burned in the field.
https://orcid.org/0000-0001-6284-4821
crop residue burning process
A crop residue management process in which crop residues are spread across the field.
https://orcid.org/0000-0001-6284-4821
obsolete crop residue spreading process
true
A land levelling process which uses animal drawn or tractor-drawn levelers.
traditional land levelling
traditional land levelling process
A mechanical pest removal process in which pests are physically caught.
trapping
trapping process
A mechanical pest removal process in which pests are physically caught.
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%201.pdf
A mechanical pest exclusion process in which barriers are used to prevent pest from getting into the area to be protected.
using barrier process
A mechanical pest exclusion process in which barriers are used to prevent pest from getting into the area to be protected.
http://www.extension.umn.edu/agriculture/pesticide-safety/ppat_manual/Chapter%201.pdf
A pest removal process in which unwanted organisms are removed by hands.
hand picking
hand pulling
hand roguing
hand picking process
A mechanical pest removal process in which a forceful stream of water is used to dislodge pests.
water pressure spraying process
A mechanical pest removal process in which a field vacuum is used to suck insects from plants.
insect vaccuming
insect vacuuming process
A cutting process in which the above ground of the plants are cut or shred.
mowing
topping
topping process
mowing process
An implement that is used during a tillage process.
tillage implement
An implement that is used during a land levelling process.
https://orcid.org/0000-0001-6284-4821
land levelling implement
An implement that is used during a residue management process.
https://orcid.org/0000-0001-6284-4821
residue management implement
An implement that is used during a fertilization process.
https://orcid.org/0000-0001-6284-4821
agronomic fertilization implement
fertilization equipment
fertilization implement
An implement that is used during a transplanting process.
https://orcid.org/0000-0001-6284-4821
transplanting implement
A planned process in which a plant is moved from one location to be planted in another one.
crop establishement
replanting
transplanting
transplanting process
plant transplanting process
A planned process in which a plant is moved from one location to be planted in another one.
https://en.wikipedia.org/wiki/Transplanting
An implement that is used in a planting process.
planting implement
A planned process in which a plant reproductive material is set into the soil.
https://orcid.org/0000-0001-6284-4821
planting process
An implement that is used during a sowing process.
seeding implement
sowing implement
An implement that is used during a chemical pest control process.
https://orcid.org/0000-0001-6284-4821
pesticide implement
chemical pest control implement
An implement that is used in an harvest process.
https://orcid.org/0000-0001-6284-4821
plant harvest implement
An implement that is used during a puddling process.
https://orcid.org/0000-0001-6284-4821
puddling implement
An implement that is used during a mulch process.
https://orcid.org/0000-0001-6284-4821
mulch implement
Source of energy used to pulled an implement.
obsolete implement traction source
true
A traction that uses only human power to use an implement.
obsolete human power
true
A traction that uses motorized power to pulled an implement.
obsolete motorized traction
true
A traction that uses animal power to pulled an implement.
obsolete animal traction
true
An equipment that is used during an irrigation process.
https://orcid.org/0000-0001-6284-4821
irrigation equipment
Protocol used to measure the area density of a material.
material area density mesurement protocol
Protocol in which the material is weighed with a scale. The weight of the material is then divided by the surface area over which the material is applied to obtain the area density of the material.
material weight per area measurement protocol
Protocol in which the volume of a material is mesured with a graduated container. The volume of the material is then divided by the surface area over which the material is applied to obtain the area density of the material.
material volume per area measurement protocol
Protocol in which the weight or the volume of the material is recorded from the packaging of the material. This value is then divided by the surface area over which the material is applied to obtain the area density of the material.
material area density recording
With a ruler measure the distance between the soil surface and the top of the mulch layer.
mulch thickness measurement protocol
With a ruler measure the distance between the center of two rows. The center of the rows is where the plant reproductive material has been planted.
interrow width measurement protocol
Measure the length of sprout with a steel tape.
sprout lenght measurement protocol
Measure the shortest distance between the water source and the entrance of the field with a measuring wheel.
water source distance measurement protocol
A protocol defined as follow: 1.Weight a sample of the material. 2.Dry this sample. 3.Weight the dry sample. Moisture concentration = ((Ww-Wd)/Ww) x 100 in which : WW = wet weight of the sample, and Wd = weight of the sample after drying.
moisture concentration measurement protocol
Measure the distance between the soil surface and the top of a bund. Repeat this operation on multiple bunds, and average the results.
bund height measurement protocol
Measurement protocol in which the depth into the soil of an agricultural process is measured.
agricultural operation depth measurement protocol
agricultural process depth measurement protocol
Use of a penometer to measure the depth of the agricultural process.
agricultural process depth measurement protocol using a penometer
Use of a penometer to measure the depth of the agricultural process.
www.cigrjournal.org/index.php/Ejounral/article/download/1073/1225
Measure the length of the implement that goes into the soil to realize the agricultural process to knoe the depth of the agricultural process. For exemple, measure the length of the tool blade used for tillage to evaluate tillage depth.
implement lenght measurement protocol
Record the concentration of the chemical element of interest in the fertilizer used indicated on the fertilizer container.
chemical concentration in fertilizer recording protocol
Count the number of row that have been harvested.
harvested row counting protocol
Count the number of row that have been harvested.
How to count a row that have been partially harvested?
Count the number of plants using a quadrat. A quadrat is a frame of a know area. Set the quadrat on the soil and count the number of plants inside it. Repeat this observation as often as mentioned in your sampling protocol.
Total number of plants= [(total number of plants counted inside the quadrat during all the observations)/ (quadrat area)/(number of observation)]x field size.
plant population measurement protocol using quadrat
plant density measurement protocol using quadrat
Count the number of plants using a quadrat. A quadrat is a frame of a know area. Set the quadrat on the soil and count the number of plants inside it. Repeat this observation as often as mentioned in your sampling protocol.
Total number of plants= [(total number of plants counted inside the quadrat during all the observations)/ (quadrat area)/(number of observation)]x field size.
https://en.wikipedia.org/wiki/Quadrat
Count the number of plants in a defined area.
Plant density= Total number of plants/ defined area
plant population simple measurement protocol
plant density simple measurement protocol
Protocol that describes how to count the number of plants in a known area.
plant population measurement protocol
plant density measurement protocol
Measure the distance between the beginning and the end of the row.
row length mesurement protocol
Protocol in which the lignin concentration of an environmental material is measured.
lignin concentration measurement protocol
Measure the lignin concentration following the acetylbromide method.
lignin concentration measurement protocol using acetylbromide
Measure the lignin concentration following the acetylbromide method.
https://www.ncbi.nlm.nih.gov/pubmed/12564795
Measure the lignin concentration following the acid detergent fiber method
ADF method
lignin concentration measurement protocol using acid detergent fiber
Measure the lignin concentration following the acid detergent fiber method
https://www.ncbi.nlm.nih.gov/pubmed/12564795
Measure the lignin concentration with the thioglycolic acid method.
lignin concentration measurement protocol using thioglycolic acid
Measure the lignin concentration with the thioglycolic acid method.
https://naldc.nal.usda.gov/download/3268/PDF
https://www.ncbi.nlm.nih.gov/pubmed/12564795
Measure the lignin concentration with the Klason method.
lignin concentration measurement Klason protocol
Measure the lignin concentration with the Klason method.
https://naldc.nal.usda.gov/download/3268/PDF
Measure the lignin concentration with the permanganate method.
lignin concentration measurement protocol using permanganate
Measure the lignin concentration with the permanganate method.
https://naldc.nal.usda.gov/download/3268/PDF
Measure the lignin concentration with the acid detergent lignin method.
ADL method
lignin concentration measurement protocol using acid detergent lignin
Measure the lignin concentration with the acid detergent lignin method.
http://pubs.acs.org/doi/abs/10.1021/jf981250q?journalCode=jafcau
A determination of organic carbon protocol that uses chromic acid to measure the oxidizable organic carbon in an environmental material.
wet oxidation method
walkley-black acid digestion method
walkley-black method
A determination of organic carbon protocol that uses chromic acid to measure the oxidizable organic carbon in an environmental material.
http://www.agvise.com/educational-articles/soil-organic-matter-a-choice-of-methods/
Method for the quantitative determination of organic nitrogen in chemical substance.
TKN method
total kjeldahl nitrogen
kjeldahl digestion
kjeldahl method
Method for the quantitative determination of organic nitrogen in chemical substance.
https://en.wikipedia.org/wiki/Kjeldahl_method
Protocol used to determine organic carbon content in environmental material according to the amount of CO2 released during combustion of the material.
dry combustion method
Protocol used to determine organic carbon content in environmental material according to the amount of CO2 released during combustion of the material.
http://agronomy.emu.ee/vol062/p6211.pdf
Protocol used to determine the content of organic nitrogen in environmental material.
determination of organic nitrogen in environmental material protocol
Protocol used to determine the content of organic carbon in environmental material.
determination of organic carbon protocol
Protocol used to measure soil organic matter and soil organic carbon. The method is based upon measuring the weight loss from a dry soil sample when exposed to high temperatures (between 350°C and 600°C). The weight loss that occurs at this temperature is then correlated to oxidizable organic carbon.
LOI method
weight loss on ignition method
Protocol used to measure soil organic matter and soil organic carbon. The method is based upon measuring the weight loss from a dry soil sample when exposed to high temperatures (between 350°C and 600°C). The weight loss that occurs at this temperature is then correlated to oxidizable organic carbon.
http://nofc.cfs.nrcan.gc.ca/bookstore_pdfs/21222.pdf
http://www.agvise.com/educational-articles/soil-organic-matter-a-choice-of-methods/
http://www2.hawaii.edu/~rsyost/Konare_etal_LOI2010.pdf
Record the speed of the tractor in the field.
Need to add a standard protocol to measure tractor speed, if it exists.
tractor speed recording protocol
Record the color of the mulch applied.
Need to add a standard protocol to measure the color of the mulch, if it exists.
mulch color recording protocol
Protocol in which the age of the transplant is determined by counting the number of days between the seeding date and the transplanting date.
transplant age counting protocol
Protocol in which the age of the transplant is determined by counting the number of days between the seeding date and the transplanting date.
http://extension.usu.edu/files/publications/publication/Horticulture_Vegetables_2015-02.pdf
http://www.academicjournals.org/article/article1380787810_Opoku-Ameyaw%20et%20al.pdf
Measure the distance between the soil surface and the top of the irrigation equipment buried in soil.
irrigation equipment depth measurement protocol
Tie a small but heavy weight to the end of a piece of string. Lower the weight into the well until it reaches the bottom. Take up the slack and mark the string at ground level. Pull the weight out of the well and measure from the bottom of the weight to the ground level mark. This is the depth of the well.
well depth measurement protocol
Tie a small but heavy weight to the end of a piece of string. Lower the weight into the well until it reaches the bottom. Take up the slack and mark the string at ground level. Pull the weight out of the well and measure from the bottom of the weight to the ground level mark. This is the depth of the well.
http://inspectapedia.com/water/Well_Depth.php
Measure the lenght of the pivot.
pivot lenght measurement protocol
Measure the lenght of the pivot.
Need a formal definition
Record the number of pest control agent released per surface area.
pest control agent released density recording protocol
Record the quantity of water used for irrigation.
irrigation water quantity recording protocol
Protocol in which the rapidity at which water moves through soil is measured.
percolation test protocol
Protocol in which the rapidity at which water moves through soil is measured.
http://greywateraction.org/contenthow-do-percolation-test/
https://en.wikipedia.org/wiki/Percolation_test
Protocol that describes how to measure a field area.
area measurement protocol
Measure the field area in the field.
area direct measurement
GIS
Measure the field area using a map (paper or electronic format).
area measurement using cartography
Record the information giving by a person that knows the field area (farmer, field owner).
area recording protocol
Protocol that describes how to measure the percentage of soil coverage by environmental material like mulch or crop residue.
soil coverage by environmental material measurement protocol
Assess visually the percentage of soil covered by environmental material.
soil coverage visual assessment protocol
Measure the percentage of soil covered by environmental material by counting the environmental material using quadrat, rope with knots or other devices.
soil coverage manual measurement protocol
Use GIS to measure the percentage of soil covered by environmental material.
soil coverage measurement using GIS
Add all the quantities of the environmental material of interest applied over a specified period.
total quantity of environmental material used compute protocol
Protocol that describes how to measure the percentage of incorporation in soil of an environmental material.
environmental material incorporation percentage measurement protocol
Assess visually the percentage of environmental material that has been buried into soil during the incorporation process.
incorporation percentage visual assessment
Use GIS to measure the percentage of environmental material that has been buried into soil during the incorporation process.
incorporation percentage measurement using GIS
Measure the percentage of environmental material that has been buried into soil by counting the environmental material using quadrat, rope with knots or other devices befor and after the incorporation process.
incorporation percentage manual measurement
An area quality inhering in a farm.
farm area
An area quality inhering in a field.
field area
A site within which an agricultural experimental process is conducted
This should be harmonized with statistical plot designs, perhaps with STATO
gross plot
parcel
plot
agricultural experimental plot
A site within which an agricultural experimental process is conducted
http://www.fao.org/wairdocs/ilri/x5546e/x5546e0a.htm
An area quality inhering in a plot.
plot size
agricultural experimental plot area
gross plot area
parcel area
plot area
A block is a relatively large area or several identical units receiving all or most of the treatments. A collection of plots is called a block.
block
A block is a relatively large area or several identical units receiving all or most of the treatments. A collection of plots is called a block.
http://www.fao.org/wairdocs/ilri/x5546e/x5546e0a.htm
Number of block used for an experiment.
number of blocks
Number of plot used during an experiment.
number of plots
A length quality that inheres in the smallest unit of an experiment.
plot length
A width entity that inheres in the smallest unit of an experiment.
plot width
A rounded container used to cultivate plant.
pot
A rounded container used to cultivate plant.
https://en.oxforddictionaries.com/definition/pot
Number of pot used during an experiment.
number of pots
Distance between the top and the bottom of a pot.
pot height
The amount of a row
number of rows
A width entity that inheres in some row.
row width
A length quality that is the distance between the beginning and the end of a row.
row length
Distance quality that represents the distance between two plots.
plot spacing
The distance between two plants
space between plants
distance between plants
Distance between two hills.
hill spacing
The distance between two rows.
inter-row spacing
distance between rows
Orientation of the rows in a field.
row orientation
Orientation of the plots in a field.
plot orientation
Replication is the repetition of the set of all the treatment combinations used in an experiment.
replication
Replication is the repetition of the set of all the treatment combinations used in an experiment.
http://www.stat.yale.edu/Courses/1997-98/101/expdes.htm
https://en.wikipedia.org/wiki/Replication_(statistics)
A process during which some material is applied to a subject
treatment
A process during which some material is applied to a subject
http://www.fao.org/wairdocs/ilri/x5546e/x5546e0a.htm
Number of treatments tested during an experiment.
number of treatments
Number of replications in an experiment.
number of replicates
number of replications
A crop is any cultivated plant, fungus, or alga that is harvested for food, clothing, livestock,fodder, biofuel, medicine, or other uses
crop
A crop is any cultivated plant, fungus, or alga that is harvested for food, clothing, livestock,fodder, biofuel, medicine, or other uses
https://en.wikipedia.org/wiki/Crop
Number of different crop used in an experiment.
number of crops
Number of crops cultivated at the same time during the previous year in the field where the experiment is done.
number of crops previously cultivated
Orientation of the slope.
slope aspect
slope orientation
An experimental design that enables an additional factor or treatment to be included at more than one level; each plot is split into two or more parts.
split plot design
An experimental design that enables an additional factor or treatment to be included at more than one level; each plot is split into two or more parts.
http://www.fao.org/wairdocs/ilri/x5546e/x5546e0a.htm#7.5.4 split plot arrangement
An experimental design in which the desired precision for measuring the interaction effect between the two factors is higher than that for measuring the main effect of either one of the two factors. This is accomplished with the use of three plot sizes :
1. Vertical strip plot for the first factor – vertical factor
2. Horizontal strip plot for the second factor – horizontal factor
3. Interaction plot for the interaction between 2 factors
split block design
strip plot design
An experimental design in which the desired precision for measuring the interaction effect between the two factors is higher than that for measuring the main effect of either one of the two factors. This is accomplished with the use of three plot sizes :
1. Vertical strip plot for the first factor – vertical factor
2. Horizontal strip plot for the second factor – horizontal factor
3. Interaction plot for the interaction between 2 factors
https://books.google.fr/books?id=PVN7_XRhpdUC&printsec=frontcover&source=gbs_ge_summary_r&cad=0#v=onepage&q&f=false
An experimental design in which two or more factors, each with discrete possible values or "levels", and whose experimental units take on all possible combinations of these levels across all such factors. That is, the design provides information on the average effect of the individual factors as well as the interaction between these two factors.
factorial design
An experimental design in which two or more factors, each with discrete possible values or "levels", and whose experimental units take on all possible combinations of these levels across all such factors. That is, the design provides information on the average effect of the individual factors as well as the interaction between these two factors.
https://en.wikipedia.org/wiki/Factorial_experiment
An experimental design in which the treatments are assigned completely at random so that each experimental unit has the same chance of receiving any one treatment. Any difference among experimental units receiving the same treatment is considered as experimental error. Hence, it is appropriate only for experiments with homogeneous experimental units, such as laboratory experiments, where environmental effects are relatively easy to control.
CRD
completely randomized design
An experimental design in which the treatments are assigned completely at random so that each experimental unit has the same chance of receiving any one treatment. Any difference among experimental units receiving the same treatment is considered as experimental error. Hence, it is appropriate only for experiments with homogeneous experimental units, such as laboratory experiments, where environmental effects are relatively easy to control.
http://www.fao.org/docrep/003/X6831E/X6831E07.htm
An experimental design in which the blocks should be composed of plots that are as homogeneous as possible. Further, blocks in the same replication should be as near as possible to maximize the variation among replication. These incomplete blocks are combined into groups that form separate, complete replications.
lattice design
An experimental design in which the blocks should be composed of plots that are as homogeneous as possible. Further, blocks in the same replication should be as near as possible to maximize the variation among replication. These incomplete blocks are combined into groups that form separate, complete replications.
https://books.google.fr/books?id=PVN7_XRhpdUC&printsec=frontcover&source=gbs_ge_summary_r&cad=0#v=onepage&q&f=false
An experimental design in which each treatment is included only once and is near to a control treatment. A control treatment is usually either a common practice or no practice.
replicated control design
An experimental design in which each treatment is included only once and is near to a control treatment. A control treatment is usually either a common practice or no practice.
http://www1.agric.gov.ab.ca/$department/deptdocs.nsf/all/sag3024
An experimental design in which basic farming practices are compared using demonstration strips on a farm field. Usually the comparison is between two to four treatments, up to a maximum of 10 and each treatment is included only once.
demonstration strip design
An experimental design in which basic farming practices are compared using demonstration strips on a farm field. Usually the comparison is between two to four treatments, up to a maximum of 10 and each treatment is included only once.
http://www1.agric.gov.ab.ca/$department/deptdocs.nsf/all/sag3024
A lattice design in which the number of treatment must be a perfect square. Blocks per replicate and plots per block are equal, and are the square root of the number of treatments.
square lattice design
A lattice design in which the number of treatment must be a perfect square. Blocks per replicate and plots per block are equal, and are the square root of the number of treatments.
http://www.iasri.res.in/iasriwebsite/DESIGNOFEXPAPPLICATION/Electronic-Book/Module%202/4LATTICE%20Designs.pdf
A lattice design that is a resolvable incomplete block design where the number of treatments or block size does not meet the strict requirements for one of the lattice designs. Also the number of entries is a multiple of block size.
alpha lattice design
A lattice design that is a resolvable incomplete block design where the number of treatments or block size does not meet the strict requirements for one of the lattice designs. Also the number of entries is a multiple of block size.
http://libcatalog.cimmyt.org/download/agris/62983.pdf
http://www.worldessaysj.com/files_site/paperlist/r_16_130802114356.pdf
Shape of the land surface surronding an area.
higher-level landform
Shape of the land surface surronding an area.
http://www.fao.org/docrep/019/a0541e/a0541e.pdf
Description of the geomorphology of the immediate surroundings of the experimental site.
agronomic land element
Description of the geomorphology of the immediate surroundings of the experimental site.
http://www.fao.org/docrep/019/a0541e/a0541e.pdf
The grade of a physical feature, landform or constructed line refers to the tangent of the angle of that surface to the horizontal.
environmental feature gradient
environmental feature slope
slope inclination
environmental feature grade
The grade of a physical feature, landform or constructed line refers to the tangent of the angle of that surface to the horizontal.
https://en.wikipedia.org/wiki/Grade_(slope)
A factor of an experiment is a controlled independent variable; a variable whose levels are set by the experimenter. A factor is a general type or category of treatments. Different treatments constitute different levels of a factor.
experimental factor
A factor of an experiment is a controlled independent variable; a variable whose levels are set by the experimenter. A factor is a general type or category of treatments. Different treatments constitute different levels of a factor.
http://www.stat.yale.edu/Courses/1997-98/101/expdes.htm
Constraint known to affect the experiment or the crop performances.
experimental constraint
A plan specification that states how treatments are allocated to the experimental units during an agronomic trial. It refers to the conceptual framework within which the experiment is conducted.
agronomic experimental design
A plan specification that states how treatments are allocated to the experimental units during an agronomic trial. It refers to the conceptual framework within which the experiment is conducted.
http://www.simplypsychology.org/experimental-designs.html
https://en.wikipedia.org/wiki/Design_of_experiments
https://www.okstate.edu/ag/agedcm4h/academic/aged5980a/5980/newpage2.htm
Unexpected event arrived during the experiment.
complication during the experiment
A complication with the equipement used during the experiment.
equipement complication
A complication with a person or a group of people working on the experiement.
complication caused by a personel
Percentage of the area of the experiment damaged due to a complication during the experiment.
percent of experiment area damaged
A planned process in which an analysis of soil is performed to determine soil characteristics.
soil analysis
soil test
soil analysis process
A planned process in which an analysis of soil is performed to determine soil characteristics.
https://en.wikipedia.org/wiki/Soil_test
Pattern used to plant crop in field.
planting distribution
Planting is done on flat-top circular mounds.
hill distribution
Planting is done in lines.
row distribution
Planting distribution where the crop zone and the traffic lanes (wheel tracks or furrows) are distinctly and permanently separated. Soil is moved from the traffic lanes and added to the crop zone, slightly raising the surface level of the crop zone
raised bed planting
row on bed distribution
Planting is done on all the field surface.
uniform distribution
Shape quality that refers to the general shape of a slope in both vertical and horizontal directions.
curvature as the direction of the bend
slope curvature
slope form
slope shape
Shape quality that refers to the general shape of a slope in both vertical and horizontal directions.
FAO, 1990
Maximum length of an agromical field.
field maximum length
An observation post where weather conditions and meteorological data are observed and recorded and reported.
https://orcid.org/0000-0001-6284-4821
weather station
An observation post where weather conditions and meteorological data are observed and recorded and reported.
http://www.merriam-webster.com/dictionary/weather%20station
Distance between the ground and the temperature sensor.
temperature sensor siting height
Distance between the ground and the wind speed sensor.
wind speed sensor siting height
Location where the experiment is implemented.
experimental site
Experimental site in which the experiment is implemented on the field of a farmer.
farmer field
Experimental site in which the experiment is done in a the field of a research station.
experimental station field
research station field
An experimental site in which the experiment is performed in a structure with walls and roof made chiefly of transparent material, such as glass, with the possibility to regulate climatic conditions.
hothouse
screenhouse
glasshouse
greenhouse
An experimental site in which the experiment is performed in a structure with walls and roof made chiefly of transparent material, such as glass, with the possibility to regulate climatic conditions.
https://en.wikipedia.org/wiki/Greenhouse
Experimental site where the experiment is done in a forest owned by a government.
governmental forest
Experimental site where the experiment is done in a private forest.
private forest
Elevation above the sea level of the experimental site.
experimental site elevation
experimental site altitude
Elevation above the sea level of the experimental site.
https://en.wikipedia.org/wiki/Altitude
Elevation above sea level of the weather station.
weather station altitude
Elevation above sea level of the weather station.
https://en.wikipedia.org/wiki/Altitude
A planned process in which a procedure is carried out to support, refute, or validate a hypothesis.
This class is relevant to more than the agronomy domain. It should be replaced by a class in a more general ontology of experiments
trial
experiment
A planned process in which a procedure is carried out to support, refute, or validate a hypothesis.
https://en.wikipedia.org/wiki/Experiment
An experiment in which a scientific method is implemented for testing certain agricultural phenomena.
agronomic experiment
type of study
agricultural experiment
A person engaged in agriculture, raising living organisms for food or raw materials.
farmer
A person engaged in agriculture, raising living organisms for food or raw materials.
https://en.wikipedia.org/wiki/Farmer
A person who conducts research.
scientist
researcher
A person who conducts research.
https://www.vocabulary.com/dictionary/researcher
A person that is enrolled or attends classes at a school, college, or university.
intern
student
A person that is enrolled or attends classes at a school, college, or university.
www.thefreedictionary.com/student
A person that works in a research station.
research station employee
A person that is employed by the government to assist people in rural areas with methods of farming and home economics.
extension agent
A person that is employed by the government to assist people in rural areas with methods of farming and home economics.
www.thefreedictionary.com/extension+agent
A person that is an educator who works at a college or university.
faculty member
A person that is an educator who works at a college or university.
www.thefreedictionary.com/faculty+member
Roled performed by a person during an experiment.
person role within the experiment
A person that has a role of collecting data related to the experiment.
data collector
A person that is the holder of an independent grant and the lead researcher for the grant project.
principal investigator
A person that is the holder of an independent grant and the lead researcher for the grant project.
https://en.wikipedia.org/wiki/Principal_investigator
A person that has a role of managing the experiment.
Need a better definiton that highlights the differences with the principal investigator.
experiment manager
A person that has a role of performing the operations required to run the experiment in the field.
field laborer
An object to be used by hand to plough soil.
https://orcid.org/0000-0001-6284-4821
hand plough
Vegetation maintained in purpose on and at the border of an agronomic experimental field.
obsolete Vegetation maintained on an experimental field
true
Strip of flowers established at the edge of the field.
obsolete flower strip
true
Strip of flowers established at the edge of the field.
http://onlinelibrary.wiley.com/doi/10.1111/cobi.12536/full
Type of vegetation surrounding an agronomic experimental site
obsolete vegetation surronding an experimental site
true
Slope on which terraces have been build.
terraced
Slope shape irregular.
irregular shape
An agricultural field that is set aside for a period of time before it is cultivated again; or an agricultral field that is under permanent crops, meadows or pastures and that is not being used for such purposes for a period of at least one year.
fallow land
An agricultural field that is set aside for a period of time before it is cultivated again; or an agricultral field that is under permanent crops, meadows or pastures and that is not being used for such purposes for a period of at least one year.
https://stats.oecd.org/glossary/detail.asp?ID=933
Strips of land along the borders of crop fields. It also include vegetative strips adjacent
to roads, paths, railways, hedgerows and forest boundaries.
field margin
Strips of land along the borders of crop fields. It also include vegetative strips adjacent
to roads, paths, railways, hedgerows and forest boundaries.
http://www.xerces.org/wp-content/uploads/2011/02/landscape-enhancement-of-floral-resources-for-honey-bees-in-agro-ecosystems.pdf
Tool for loosening compacted soil layers 12 to 16 inches (30 to 40 cm) deep and still maintain high surface residue levels.
https://orcid.org/0000-0001-6284-4821
paraplow
paraplough
Tool for loosening compacted soil layers 12 to 16 inches (30 to 40 cm) deep and still maintain high surface residue levels.
https://www.nrcs.usda.gov/Internet/FSE_DOCUMENTS/nrcs144p2_030994.pdf
Tillage tool that stirs and pulverizes the soil, either before planting (to aerate the soil and prepare a smooth, loose seedbed) or after the crop has begun growing (to kill weeds—controlled disturbance of the topsoil close to the crop plants kills the surrounding weeds by uprooting them, burying their leaves to disrupt their photosynthesis, or a combination of both). Cultivator is designed to disturb the soil in careful patterns, sparing the crop plants but disrupting the weeds. Cultivator teeth work near the surface.
https://orcid.org/0000-0001-6284-4821
cultivator
Tillage tool that stirs and pulverizes the soil, either before planting (to aerate the soil and prepare a smooth, loose seedbed) or after the crop has begun growing (to kill weeds—controlled disturbance of the topsoil close to the crop plants kills the surrounding weeds by uprooting them, burying their leaves to disrupt their photosynthesis, or a combination of both). Cultivator is designed to disturb the soil in careful patterns, sparing the crop plants but disrupting the weeds. Cultivator teeth work near the surface.
https://en.wikipedia.org/wiki/Cultivator
A disk harrow with disc blades arranged into four sections.
https://orcid.org/0000-0001-6284-4821
tandem disc harrow
A disk harrow with disc blades arranged into four sections.
https://en.wikipedia.org/wiki/Disc_harrow
A disk harrow with disc blades arranged into two sections.
https://orcid.org/0000-0001-6284-4821
offset disc harrow
A disk harrow with disc blades arranged into two sections.
https://en.wikipedia.org/wiki/Disc_harrow
A sowing device that positions seeds in the soil and then covers them. The seed drill sows the seeds at equal distances and proper depth, ensuring that the seeds get covered with soil.
https://orcid.org/0000-0001-6284-4821
drill seeder
seed drill
A sowing device that positions seeds in the soil and then covers them. The seed drill sows the seeds at equal distances and proper depth, ensuring that the seeds get covered with soil.
https://en.wikipedia.org/wiki/Seed_drill
A seeding implement that consists of a seed drum, main shaft, ground wheel, floats, and handle. Joining smaller ends of frustum of cones makes the seed drum.
https://orcid.org/0000-0001-6284-4821
paddy drum seeder
drum seeder
A seeding implement that consists of a seed drum, main shaft, ground wheel, floats, and handle. Joining smaller ends of frustum of cones makes the seed drum.
drum.http://www.kvkimphalwest.org/images/paddy-drum-seeder.pdf
An agricultural hand tool ade of a blade set to an handle and used to shape the soil, control weeds, clear soil, and harvest root crops.
https://orcid.org/0000-0001-6284-4821
hand-held hoe
hoe
An agricultural hand tool ade of a blade set to an handle and used to shape the soil, control weeds, clear soil, and harvest root crops.
https://en.wikipedia.org/wiki/Hoe_(tool)
A seed drill that consists of a seed box attached to the mainframe of a hand wheel hoe. A fluted roller assembly is provided at the bottom of the seed box. Fluted roller is rotated with the help of
chain and sprockets from the ground wheel.
manual oilseed drill
A seed drill that consists of a seed box attached to the mainframe of a hand wheel hoe. A fluted roller assembly is provided at the bottom of the seed box. Fluted roller is rotated with the help of
chain and sprockets from the ground wheel.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
A curved metal bar used to open the soil before putting the seed into the soil.
https://orcid.org/0000-0001-6284-4821
tyne opener planter
A curved metal bar used to open the soil before putting the seed into the soil.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
Manually operated device for creating a conical cavity in the soil for sowing of seeds. It consists of a wooden round stick with one end having a sheet metal cone. The other end is provided with a handgrip.
https://orcid.org/0000-0001-6284-4821
dibbling stick
Manually operated device for creating a conical cavity in the soil for sowing of seeds. It consists of a wooden round stick with one end having a sheet metal cone. The other end is provided with a handgrip.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
Manually operated hand tool which consists of a seed hopper, cell roller for metering of seeds, spring actuated jaws for penetration in the soil, pipe and handle.
https://orcid.org/0000-0001-6284-4821
naveen dibbler
Manually operated hand tool which consists of a seed hopper, cell roller for metering of seeds, spring actuated jaws for penetration in the soil, pipe and handle.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
An tool made of mild steel flat or leaf spring by forging operation. The working end is flattened and edge made sharp for easy penetration in the soil.
https://orcid.org/0000-0001-6284-4821
hand dibbler
An tool made of mild steel flat or leaf spring by forging operation. The working end is flattened and edge made sharp for easy penetration in the soil.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
Manually operated push device for dibbling of medium and bold size seeds. It consists of a rotating dibbling head with penetrating jaws, covering-cum-transport wheel, seed hopper with cell wooden roller and a handle.
https://orcid.org/0000-0001-6284-4821
rotary dibbler
Manually operated push device for dibbling of medium and bold size seeds. It consists of a rotating dibbling head with penetrating jaws, covering-cum-transport wheel, seed hopper with cell wooden roller and a handle.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
Manually operated hand tool that consists of cutter head having semicircular blades connected to pipe with the help of clamp and flange. The connecting pipe is further connected to a handle.
https://orcid.org/0000-0001-6284-4821
earth auger
Manually operated hand tool that consists of cutter head having semicircular blades connected to pipe with the help of clamp and flange. The connecting pipe is further connected to a handle.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
A flat and circular piece of metal used to open the soil before putting the seed into the soil.
single disc opener planter
A flat and circular piece of metal used to open the soil before putting the seed into the soil.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
Double flat and circular piece of metal used to open the soil before putting the seed into the soil.
https://orcid.org/0000-0001-6284-4821
double disck opener planter
Double flat and circular piece of metal used to open the soil before putting the seed into the soil.
http://agricoop.nic.in/dacdivision/Machinery1/chap2a.pdf
Irrigation method based on manual intervention.
manual irrigation
Irrigation method with no or just a minimum of manual intervention beside the surveillance. Almost every system can be automated with help of timers, sensors or computers or mechanical appliances.
automatic irrigation
Irrigation method with no or just a minimum of manual intervention beside the surveillance. Almost every system can be automated with help of timers, sensors or computers or mechanical appliances.
http://www.sswm.info/content/automatic-irrigation
An application method in which a material entity is placed into the soil in holes made with a pointed implement.
precision seeding
dibbling
An application method in which a material entity is placed into the soil in holes made with a pointed implement.
http://www.thefreedictionary.com/dibbling
An application method in which seeds are uniformlyplaced into shallow furrows before closing the furrows.
line sowing
drilling
An application method in which seeds are uniformlyplaced into shallow furrows before closing the furrows.
http://www.culturalecology.info/ancillary/seed_machines_files/sowingseeds.htm
line sowing
http://agriinfo.in/default.aspx?page=topic&superid=1&topicid=337
An object used to perform an agricultural process.
https://orcid.org/0000-0001-6284-4821
agricultural implement
Vertical arrangement of plants in a field.
column
Total quantity of fertilizer applied in a given surface area during a cropping season.
fertilizer amount over a season
fertilizer area density over a cropping season
Elevation above the sea level of the soil profile.
soil profile altitude
A planned process in which grazing animals on pasture are managed by humans.
http://aims.fao.org/aos/agrovoc/c_3367
grazing
regulation of grazing
A planned process in which grazing animals on pasture are managed by humans.
http://extension.psu.edu/agronomy-guide/cm/sec8/sec810l
Grazing management system developped by Allan Savory. The system is based on a rotational grazing system but doing so at high densities for short intervals. Livestock is used as a tool to increase soil fertility and plant life. Incorporating plant organic matter and manure into the soil promotes the recycling of nutrients.
holistic grazing
holistic planned grazing
Grazing management system developped by Allan Savory. The system is based on a rotational grazing system but doing so at high densities for short intervals. Livestock is used as a tool to increase soil fertility and plant life. Incorporating plant organic matter and manure into the soil promotes the recycling of nutrients.
http://savory.global/assets/docs/evidence-papers/about-holistic-planned-grazing.pdf
http://www2.ca.uky.edu/grazer/July11_Holistic.php
https://en.wikipedia.org/wiki/Holistic_management_(agriculture)
A grazing management method that involves moving livestock at least daily between small paddocks, sized to match the number of grazing animals, and split by fence. The goal is for every plant in the grazing cell to be either eaten or walked on and trampled. Grass in each paddock then rests for 60-120 days or more.
ultra-high density grazing
mob grazing
A grazing management method that involves moving livestock at least daily between small paddocks, sized to match the number of grazing animals, and split by fence. The goal is for every plant in the grazing cell to be either eaten or walked on and trampled. Grass in each paddock then rests for 60-120 days or more.
https://www.nrcs.usda.gov/wps/portal/nrcs/detail/ia/newsroom/features/?cid=stelprdb1186272
ultra-high density grazing
http://www2.ca.uky.edu/grazer/April_2013_Grazing_Systems.php
A grazing management system in which the land is subdivided or sectioned off into smaller areas, sometimes called paddocks. The livestock are moved from one paddock to another in order to best promote plant health and growth.
http://aims.fao.org/aos/agrovoc/c_6663
rotational grazing
A grazing management system in which the land is subdivided or sectioned off into smaller areas, sometimes called paddocks. The livestock are moved from one paddock to another in order to best promote plant health and growth.
http://forages.oregonstate.edu/nfgc/eo/onlineforagecurriculum/instructormaterials/availabletopics/grazing/types
A grazing management system in which livestock have unrestricted access to the pasture area throughout the grazing season.
http://aims.fao.org/aos/agrovoc/c_36542
continuous grazing
A grazing management system in which livestock have unrestricted access to the pasture area throughout the grazing season.
www.sheep101.info/201/grazingsystems.html
A system of grazing which confined animals to a strip or small part of the field for rapid grazing in a short time period.. The rest of the field is protected by a temporary fence, usually electric.
http://aims.fao.org/aos/agrovoc/c_7456
strip grazing
A system of grazing which confined animals to a strip or small part of the field for rapid grazing in a short time period.. The rest of the field is protected by a temporary fence, usually electric.
http://forages.oregonstate.edu/nfgc/eo/onlineforagecurriculum/instructormaterials/availabletopics/grazing/types
http://oek1.fao.org/skosmos/agrovoc/en/page/?uri=http%3A%2F%2Faims.fao.org%2Faos%2Fagrovoc%2Fc_7456&clang=en
A rotational grazing management system that implies many paddocks are utilized and livestock are moved on a frequent basis. It provides more stable production during poor growing conditions, greater yield, higher quality, decreased weed and erosion, and uniform soil fertility levels.
MIG
Voisin grazing management
management intensive grazing
intensive rotational grazing
A rotational grazing management system that implies many paddocks are utilized and livestock are moved on a frequent basis. It provides more stable production during poor growing conditions, greater yield, higher quality, decreased weed and erosion, and uniform soil fertility levels.
http://forages.oregonstate.edu/nfgc/eo/onlineforagecurriculum/instructormaterials/availabletopics/grazing/types
MIG
http://tropicalgrazinginstitute.org/our-work/
Voisin grazing management
http://tropicalgrazinginstitute.org/our-work/
management intensive grazing
http://tropicalgrazinginstitute.org/our-work/
An intensive rotational grazing system in which livestock is allowed to graze for a limited time, leaving a leafy stubble, and then is moved to another area.
http://aims.fao.org/aos/agrovoc/c_5497
controlled grazing
An intensive rotational grazing system in which livestock is allowed to graze for a limited time, leaving a leafy stubble, and then is moved to another area.
http://articles.extension.org/pages/19432/goat-pastures-strip-grazing
Intensive grazing system in which the field is divided into many small plots of equal size. Grasses are raised with application of large quantities of nitrogenous fertilizers. The livestock are divided into three groups : high, medium and low yeilders. They are let into the paddock by rotation so that the opportunity for grazing most nutritious immature grasses goes to the high yielders followed by medium producers and lastly low yielders.
hohenheim grazing system
Intensive grazing system in which the field is divided into many small plots of equal size. Grasses are raised with application of large quantities of nitrogenous fertilizers. The livestock are divided into three groups : high, medium and low yeilders. They are let into the paddock by rotation so that the opportunity for grazing most nutritious immature grasses goes to the high yielders followed by medium producers and lastly low yielders.
http://ecoursesonline.iasri.res.in/mod/page/view.php?id=62175
hohenheim grazing system
http://forages.oregonstate.edu/nfgc/eo/onlineforagecurriculum/instructormaterials/availabletopics/grazing/types
A grazzing management system that allows young farm animals to graze part of the pasture before the adults. It employs a gate through which young animals, but not adults, can pass to get first choice of fresh feed in the next door paddock.
creep grazing
A grazzing management system that allows young farm animals to graze part of the pasture before the adults. It employs a gate through which young animals, but not adults, can pass to get first choice of fresh feed in the next door paddock.
beeflambnz.com/Documents/Farm/Creep%20grazing%20lambs.pdf
http://www.thefreedictionary.com/creep-grazing
A gazing management system in which two or more groups of animal, usually with different nutritional needs, graze the same paddock but at different time.
first-last grazing
A gazing management system in which two or more groups of animal, usually with different nutritional needs, graze the same paddock but at different time.
http://forages.oregonstate.edu/nfgc/eo/onlineforagecurriculum/instructormaterials/availabletopics/grazing/types
Area of field that have been harvested.
harvested surface area
Area of soil surfae covered with mulch.
soil mulch coverage
Area of soil surfae covered with mulch.
mulch percent coverage
Area of soil covered by organic fertilizer.
soil organic fertilizer coverage
Height of the small earth embankments which contain irrigation water within basins.
bund height
Height of the small earth embankments which contain irrigation water within basins.
http://www.fao.org/docrep/s8684e/s8684e03.htm
Tractor speed in the field.
tractor speed
An area density quality which inheres in micronutrients by virtue of some influence exerted by the mass of micronutrients applied in a given surface area. Micronutrients for plants are Boron, Chlorine, Iron, Zinc, Manganese, Molybdenum, Copper, Nikel.
micronutrients area density
An area density quality which inheres in micronutrients by virtue of some influence exerted by the mass of micronutrients applied in a given surface area. Micronutrients for plants are Boron, Chlorine, Iron, Zinc, Manganese, Molybdenum, Copper, Nikel.
http://cetehama.ucanr.edu/Newsletters_510/?newsitem=39348
An area density quality which inheres in above-ground crop residue by virtue of some influence exerted by the mass of above-ground crop residue applied in a given surface area.
crop residue amount
crop residue area density
Length of the pivot used during the irrigation process.
center pivot irrigation equipment length
Distance between the bottom of the well and the soil surface.
well depth
An area density quality which inheres in rhizobium by virtue of some influence exerted by the mass of rhizobium inoculated into the soil.
quantity of rhizobium
rhizobium area density
Amount of nutrient in the crop as a ratio of the amount applied or available.
NRE
nitrogen recovery efficiency
Amount of nutrient in the crop as a ratio of the amount applied or available.
https://www.ipni.net/ppiweb/bcrops.nsf/$webindex/81A4850CE6E9C87085256F380054252B/$file/04-4p15.pdf
Calculate the amount of nitrogen in the crop as a ratio of the amount of nitrogen applied or available.
nitrogen recovery efficiency measurement protocol
Ratio between the amount of nitrogen fertilizer removed from the field by the crop and the amount of nitrogen fertilizer applied. It provides information about the relative utilization of additional nitrogen applied to a agricultural production system.
nitrogen use efficiency
Ratio between the amount of nitrogen fertilizer removed from the field by the crop and the amount of nitrogen fertilizer applied. It provides information about the relative utilization of additional nitrogen applied to a agricultural production system.
http://www.oecd.org/tad/sustainable-agriculture/44810448.pdf
Calculate the ratio between the amount of nitrogen fertilizer removed with the crop and the amount of nitrogen fertilizer applied.
nitrogen use efficiency measurement protocol
Carbon-to-nitrogen ratio is a ratio of the mass of carbon to the mass of nitrogen in an organic fertilizer.
organic fertilizer carbon to nitrogen ratio
Carbon-to-nitrogen ratio is a ratio of the mass of carbon to the mass of nitrogen in an organic fertilizer.
https://en.wikipedia.org/wiki/Carbon_to_nitrogen_ratio
Agricultural tool that is hand-held and composed of a curved blade with a sharp inside and a handle. It is used for harvesting, or reaping, grain crops or cutting succulent forage chiefly for feeding livestock, either freshly cut or dried as hay.
https://orcid.org/0000-0001-6284-4821
bagging hook
brishing hook
grasshook
reaping hook
rip-hook
slash-hook
swap hook
sickle
Agricultural tool that is hand-held and composed of a curved blade with a sharp inside and a handle. It is used for harvesting, or reaping, grain crops or cutting succulent forage chiefly for feeding livestock, either freshly cut or dried as hay.
https://en.wikipedia.org/wiki/Sickle
Planned process is which the edible part of the cereal grain is loosen from the scaly, inedible chaff that surrounds it. It is the step in grain preparation after harvesting and before winnowing, which separates the loosened chaff from the grain. Threshing does not remove the bran from the grain.
threshing process
Planned process is which the edible part of the cereal grain is loosen from the scaly, inedible chaff that surrounds it. It is the step in grain preparation after harvesting and before winnowing, which separates the loosened chaff from the grain. Threshing does not remove the bran from the grain.
https://en.wikipedia.org/wiki/Threshing
Agricultural tool made from two or more large sticks attached by a short chain; one stick is held and swung, causing the other to strike a pile of grain, loosening the husks.
https://orcid.org/0000-0001-6284-4821
flail
Agricultural tool made from two or more large sticks attached by a short chain; one stick is held and swung, causing the other to strike a pile of grain, loosening the husks.
https://en.wikipedia.org/wiki/Flail
Agricultural tool that consists of a shaft about 170 centimetres (67 in) long made of wood or metal. The shaft has either one or two short handles at right angles to it, usually one near the upper end and always another roughly in the middle. A curved, steel blade between 60 to 90 centimetres (24 to 35 in) long is mounted at the lower end at 90°, or less, to the shaft. It is hand powered.
https://orcid.org/0000-0001-6284-4821
scythe
Agricultural tool that consists of a shaft about 170 centimetres (67 in) long made of wood or metal. The shaft has either one or two short handles at right angles to it, usually one near the upper end and always another roughly in the middle. A curved, steel blade between 60 to 90 centimetres (24 to 35 in) long is mounted at the lower end at 90°, or less, to the shaft. It is hand powered.
https://en.wikipedia.org/wiki/Scythe
A planned process in which the grain is separated from chaff. It is also used to remove weevils or other pests from stored grain. It is done after threshing, the loosening of grain or seeds from the husks and straw.
winnowing process
A planned process in which the grain is separated from chaff. It is also used to remove weevils or other pests from stored grain. It is done after threshing, the loosening of grain or seeds from the husks and straw.
https://en.wikipedia.org/wiki/Winnowing
A pruning process in which whole tops of trees or large branches and/or trunks from the tops of trees are removed, leaving stubs or lateral branches that are too small to assume the role of a terminal leader.
hat-racking
heading
rounding
tipping
étêtage
tree topping process
A pruning process in which whole tops of trees or large branches and/or trunks from the tops of trees are removed, leaving stubs or lateral branches that are too small to assume the role of a terminal leader.
https://en.wikipedia.org/wiki/Topping_(agriculture)
A pruning process in which dried, yellowish green, bottom leaves in the sugarcane crop are removed at regular intervals.
detrashing process
detrashing
A pruning process in which dried, yellowish green, bottom leaves in the sugarcane crop are removed at regular intervals.
http://www.sugarcanecrops.com/agronomic_practices/detrashing/
https://www.cabdirect.org/cabdirect/abstract/20103065565
A pruning process in which branches from either standing or downed trees are removed.
limbing process
limbing
A pruning process in which branches from either standing or downed trees are removed.
http://extension.missouri.edu/p/G1958
A planned process in which a rigid support is used to support, or to prevent from falling a crop or a tree.
staking process
Need a better definition to know if staking and propping are exactly the same process, or have differences.
propping process
A planned process in which a rigid support is used to support, or to prevent from falling a crop or a tree.
http://www.dictionary.com/browse/propping
An harvest process that involves a multiple step process to turns green, perishable, forage into a product that can be safely stored and easily transported without danger of spoilage.
haymaking process
An harvest process that involves a multiple step process to turns green, perishable, forage into a product that can be safely stored and easily transported without danger of spoilage.
http://www.fao.org/docrep/005/x7660e/x7660e06.htm
https://en.wikipedia.org/wiki/Hay
An harvest process in which the cut herbage is putting into rows for further handling and collection, and sometimes also for protection at night.
swathing
windrowing
An harvest process in which the cut herbage is putting into rows for further handling and collection, and sometimes also for protection at night.
http://www.fao.org/docrep/005/x7660e/x7660e06.htm
An harvesting process in which dry forage is bound by ropes into a bale.
baling process
An harvesting process in which dry forage is bound by ropes into a bale.
http://www.thefreedictionary.com/baling
An harvest process in which herbage is put into cocks (small heaps). It is an intermediate stage of herbage drying used in some manual systems.
trussing process
An harvest process in which herbage is put into cocks (small heaps). It is an intermediate stage of herbage drying used in some manual systems.
http://www.fao.org/docrep/005/x7660e/x7660e06.htm
A planned process in which the harvest is stored.
storage process
agricultural product storage process
An harvest process in which the mature part of the crop is cut.
cutting process
An harvest process in which the mature part of the crop is cut.
http://www.knowledgebank.irri.org/postproductioncourse/index.php/what-is-harvesting/cutting-the-rice-crop
Maximum width of an agronomical field.
field maximum width
An cropping system in which a definite cycle of crops or crop types is grown in succession on the same land.
crop rotation process
rotation
rotation process
crop rotation
An cropping system in which a definite cycle of crops or crop types is grown in succession on the same land.
Yates (1954) notes the agricultural definition is looser than an experimental one, i.e. substitution of crops or change to the length of the cycle. This definition must regard changes to the period of a rotation cycle as a different rotation, but should allow a rotation to be defined either using either named crops or a combination of named crops and crop types, for example an Oats, Legumes, Wheat rotation.
A process in which a definite cycle of management interventions is done on the same land.
https://orcid.org/0000-0002-1434-9495
sequence
sequence process
An agricultural implement that uses moving forks to aerate or "wuffle" the hay and thus speed up the process of hay-making. It is used after cutting and before windrowing.
hay tedder
tedder
An agricultural implement that uses moving forks to aerate or "wuffle" the hay and thus speed up the process of hay-making. It is used after cutting and before windrowing.
https://en.wikipedia.org/wiki/Tedder_(machine)
An harvest implement that reaps, threshes, and cleans a crop in one operation.
combine harvester
An harvest implement that reaps, threshes, and cleans a crop in one operation.
Richard Ostler
An harvesting process in which root crop are removed from the soil
lifting process
An harvesting process in which root crop are removed from the soil
Richard Ostler
A planned process in which an herbicide is applied to a crop shortly before harvest. The purpose is to reduce green crop foliage or assit crop drying.
https://orcid.org/0000-0001-6284-4821
Pre-harvest crop desiccation
siccation
dessication process
A planned process in which an herbicide is applied to a crop shortly before harvest. The purpose is to reduce green crop foliage or assit crop drying.
https://en.wikipedia.org/wiki/Crop_desiccation
An agricultural experiment running over decadal time periods.
https://orcid.org/0000-0002-1434-9495
long-term experiment
An agricultural experiment running over decadal time periods.
Richard Ostler
An agricultural experiment running over less than decadal time periods.
https://orcid.org/0000-0002-1434-9495
short-term experiment
An agricultural experiment running over less than decadal time periods.
Richard Ostler
An agricultural experiment having one or more definite sequences.
https://orcid.org/0000-0002-1434-9495
sequence experiment
An agricultural experiment having one or more definite sequences.
Richard Ostler
An agricultural experiment having more than one definite rotations or a comparison between rotation and mono-cropping.
https://orcid.org/0000-0002-1434-9495
rotation experiment
crop rotation experiment
An agricultural experiment having more than one definite rotations or a comparison between rotation and mono-cropping.
Richard Ostler
1
An agricultural experiment involving the prolonged growing of a single crop.
continuous crop experiment
continuous mono-cropping experiment
monoculture experiment
mono-cropping experiment
mono-cropping experiment
Richard Ostler
An cropping system in which a single crop is cultivated in an area at a time.
https://orcid.org/0000-0002-1434-9495
continuous crop
continuous mono-cropping
mono-cropping
monocropping
monoculture
An cropping system in which a single crop is cultivated in an area at a time.
https://en.wikipedia.org/wiki/Monoculture
An agricultural experiment in which a sequence of crops is grown without repetition
https://orcid.org/0000-0002-1434-9495
short-term rotation experiment
crop-sequence experiment
single cycle experiment
An agricultural experiment in which a sequence of crops is grown without repetition
Richard Ostler
An agronomic experimental design set for rotation experiments
rotation experimental design
rotation layout
A rotation layoutan using series.
serial layout
A rotation layout that does not use series. Therefore, plots carrying different phases of a rotation are intermixed across the experimental land.
non-serial layout
A block in which the plots carry the same phase of a rotation. A series is defined to answer management constraints rather than statistical constraints.
series
A planned process which is a distinguishable part of a rotation process
https://orcid.org/0000-0002-1434-9495
rotation phase
A duration inhering in a crop rotation process
rotation duration
crop rotation duration
An area density unit which is equal to the number of seeds per meters squared.
https://orcid.org/0000-0001-6284-4821
seed/m2
seed per meter square
An area density unit which is equal to the number of seeds per acre.
seed/ac
seed per acre
An area density unit which is equal to the number of rows per plot.
row/plot
row per plot
An area density unit which is equal to the number of rows per meters squared.
row/m2
row per meter square
An area density unit which is equal to the number of rows per feet squared.
row/ft2
row per foot square
An area density unit which is equal to the number of rows per acre.
row/ac
row per acre
An area density unit which is equal to the number of rows per hectare.
row/ha
row per hectare
An area density unit which is equal to the number of plants per hill.
plants/hill
plants per hill
Number of plants per row.
plants/row
plants per row
Number of plants per square meter.
plants/m2
plants per square meter
An area density unit which is equal to the number of plants per hectare.
plants/ha
plants per hectare
Number of plants per pot.
plants/pot
plants per pot
A planned process in which ridges are created.
Ridging, hilling, earthing up
ridging process
A planned process in which trees, stumps, brush, stones and other obstacles are removed from an area with the intention of creating a potential use for agricultural purposes.
land clearing process
A planned process in which trees, stumps, brush, stones and other obstacles are removed from an area with the intention of creating a potential use for agricultural purposes.
http://www.evansly.co/documents/CLEAR%20AND%20GRUBBING/870218-41_land_clearing.pdf
https://www2.gnb.ca/content/gnb/en/departments/10/agriculture/content/crops/organic_production/land_development/land_clearing.html
An area density quality which inheres in animal manure by virtue of some influence exerted by the mass of animal manure applied in a given surface area.
An area density quality which inheres in animal manure by virtue of some influence exerted by the mass of animal manure applied in a given surface area.
amount of animal manure applied
animal manure area density
An agricultural process using processes that are non-polluting, conserve non-renewable energy and natural resources, are economically efficient, are safe for workers, communities and consumers, and do not compromise the needs of future generations
sustainable agriculture process
An agricultural process using processes that are non-polluting, conserve non-renewable energy and natural resources, are economically efficient, are safe for workers, communities and consumers, and do not compromise the needs of future generations
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/288329/11-546-future-of-food-and-farming-report.pdf
2
An cropping system in which two or more crops are cultivated in the same space at the same time.
intercropping
An cropping system in which two or more crops are cultivated in the same space at the same time.
https://eap.mcgill.ca/CSI_1.htm
https://en.wikipedia.org/wiki/Intercropping
https://www.researchgate.net/publication/224934832_Annual_intercrops_An_alternative_pathway_for_sustainable_agriculture#pf4
An agricultural process in which two or more plant species are cultivated on the same area, totally mixed without arrangement in distinct rows.
mixed intercropping
An agricultural process in which two or more plant species are cultivated on the same area, totally mixed without arrangement in distinct rows.
https://eap.mcgill.ca/CSI_1.htm
https://en.wikipedia.org/wiki/Intercropping
https://www.researchgate.net/publication/224934832_Annual_intercrops_An_alternative_pathway_for_sustainable_agriculture#pf4
An agricultural process in which two or more plant species are cultivated in separate alternate row.
row intercropping
An agricultural process in which two or more plant species are cultivated in separate alternate row.
https://www.researchgate.net/publication/224934832_Annual_intercrops_An_alternative_pathway_for_sustainable_agriculture#pf4
An agricultural process in which two or more plant species are planted simultaneously within the same row in varying seeding ratios.
within row intercropping
An agricultural process in which two or more plant species are planted simultaneously within the same row in varying seeding ratios.
https://eap.mcgill.ca/CSI_1.htm
https://www.researchgate.net/publication/224934832_Annual_intercrops_An_alternative_pathway_for_sustainable_agriculture#pf4
An agricultural process in which two or more plant species are cultivated on the same area and where the second crop is sown during the growth, often near the onset of reproductive development or fruiting of the first crop, so that the first crop is harvested to make room for the full development of the second crop
relay cropping
An agricultural process in which two or more plant species are cultivated on the same area and where the second crop is sown during the growth, often near the onset of reproductive development or fruiting of the first crop, so that the first crop is harvested to make room for the full development of the second crop
https://eap.mcgill.ca/CSI_1.htm
https://www.researchgate.net/publication/224934832_Annual_intercrops_An_alternative_pathway_for_sustainable_agriculture#pf4
An agricultural process in which a fast-growing crop is seeded simultaneously with a slow-growing crop, so that the first crop is harvested before the second crop starts to mature.
temporal intercropping
sequential intercropping
An agricultural process in which a fast-growing crop is seeded simultaneously with a slow-growing crop, so that the first crop is harvested before the second crop starts to mature.
https://en.wikipedia.org/wiki/Intercropping
https://www.researchgate.net/publication/224934832_Annual_intercrops_An_alternative_pathway_for_sustainable_agriculture#pf4
https://eap.mcgill.ca/CSI_1.htm
An agricultural process in which two or more plant species are cultivated simultaneously on the same area in different strips wide enough to permit independent cultivation but narrow enough for the crops to interact agronomically.
strip intercropping
An agricultural process in which two or more plant species are cultivated simultaneously on the same area in different strips wide enough to permit independent cultivation but narrow enough for the crops to interact agronomically.
https://eap.mcgill.ca/CSI_1.htm
https://en.wikipedia.org/wiki/Intercropping
https://www.researchgate.net/publication/224934832_Annual_intercrops_An_alternative_pathway_for_sustainable_agriculture#pf4
The date of a land clearing process
land clearing date
A process in which vegetation is cut down and burned as a method of clearing the land for cultivation.
S&B
fire-fallow cultivation
slash-and-burn
slash-and-burn process
A process in which vegetation is cut down and burned as a method of clearing the land for cultivation.
https://www.rainforestsaver.org/what-slash-and-burn-farming
A process in which vegetation is cut down and removed from the land.
slash-and-remove process
A process in which rocks are crushed to clear the land.
rock crushing process
A process in which vegetation is cut down, grinded and mulched on the cleared land.
cut and grind process
A process in which vegetation is cut down, grinded and mulched on the cleared land.
https://www.marksclearing.com/5-popular-land-clearing-techniques/
A process in which slashed vegetation is piled together and burned.
pile and burn process
A process in which slashed vegetation is piled together and burned.
https://www2.gov.bc.ca/gov/content/environment/air-land-water/air/air-pollution/smoke-burning/industrial
A process in which vegetation is burned as a method of clearing the land.
burn technique
land burning process
A process in which rocks are removed to clear the land.
rock removal process
A process in which roots are crushed to clear the land.
roots crushing process
The date of a ridging process
ridging date
A device used to create ridges.
ridging device
ridging implement
A device used to create ridges at the same time than planting.
ridging device mounted on planting implement
The concentration of crop residue when measured in liquid water.
Concentration of water in crop residue.
crop residue moisture
A device that applys the spray liquid through nozzles, which are attached to a horizontal structure (boom) and which are normally directed towards the ground.
A device used to spray a liquid.
sprayer
A device that applys the spray liquid through nozzles, which are attached to a horizontal structure (boom) and which are normally directed towards the ground.
http://www.fao.org/3/Y2753E/Y2753E00.htm
An implement which is a pipe for distributing spray using attached nozzles. It has a list of system components that work together to deliver the spray fluid.
boom sprayer
An implement which is a pipe for distributing spray using attached nozzles. It has a list of system components that work together to deliver the spray fluid.
https://www.google.com/patents/US8420070
https://en.wikipedia.org/w/index.php?title=Sprayer&oldid=1031049884
An agricultural implement that harvests forage plants to make silage.
chopper
forager
silage harvester
forage harvester
forage harvester
https://en.wikipedia.org/wiki/Forage_harvester
An agricultural implement that cuts and often also gathers crops when they are ripe.
reapper
An agricultural implement that cuts and often also gathers crops when they are ripe.
https://en.wikipedia.org/wiki/Reaper
An agricultural implement, resembling a plow, that pulls up harvestable parts of plants growing underground.
digger
An agricultural implement, resembling a plow, that pulls up harvestable parts of plants growing underground.
https://www.britannica.com/topic/root-crop
A width entity that inheres in some ridge.
ridge width
Distance between the top and the bottom of a ridge.
A height entity that inheres in some ridge.
ridge height
Distance between two ridges.
distance between ridges
All living biomass above the soil including stem, stump, branches, bark, seeds and foliage.
aboveground organic material
aboveground biomass
All living biomass above the soil including stem, stump, branches, bark, seeds and foliage.
http://www.fao.org/3/j9345e/j9345e12.htm
All living biomass of live roots. Fine roots of less than (suggested) 2mm diameter are sometimes excluded because these often cannot be distinguished empirically from soil organic matter or litter.
below-ground biomass
All living biomass of live roots. Fine roots of less than (suggested) 2mm diameter are sometimes excluded because these often cannot be distinguished empirically from soil organic matter or litter.
http://www.fao.org/3/j9345e/j9345e12.htm
Young sporophyte developing out of a plant embryo from a seed.
seedling
Young sporophyte developing out of a plant embryo from a seed.
https://en.wikipedia.org/wiki/Seedling
A proccess in which water inputs rely only on rainfall.
no irrigation
rainfed
zero irrigation
rainfed process
A proccess in which water inputs rely only on rainfall.
https://en.wikipedia.org/wiki/Rainfed_agriculture
A manual tool used to sow large seeds in rows or in bunches on plastic mulch films or in the earth. This device is used to sow seeds manually, while standing in a natural position.
jab planter
A manual tool used to sow large seeds in rows or in bunches on plastic mulch films or in the earth. This device is used to sow seeds manually, while standing in a natural position.
https://www.terrateck.com/en/plantoirs/34-canne-a-semer.html
A moistness quality inhering in a bearer by virtue of the bearer being partially covered in liquid.
moist
A crop residue removal process in which crop residues are removed from the field.
crop residue removal process
Use more defined class with better reasoning
mm/plot
obsolete_millimeter per plot
true
Number of plant per feet squared.
plants/ft2
plants per foot square
Use more defined class with better reasoning
in/plot
obsolete_inch per plot
true
Number of plants per plot.
plants/plot
plants per plot
Number of square meters of agricultural field or plot harvested.
number of m2 harvested
number of m2 units harvested
number of square meter harvested
Distance between the ground and the point where the plant is cut for harvest.
harvest cut height
The amount of a pesticide
obsolete pesticide amount
true
Number of pesticide process
total number of pesticide application
number of pesticide application
The time of a pesticide application process
timing of pesticide application
pesticide application date
The amount of a weeding chemical
obsolete weeding chemical amount
true
Distance between water source and field.
source distance
distance between the water source and the field
A planned process which confines all machinery loads to the least possible area of permanent traffic lanes. The permanent traffic lanes are normally parallel to each other.
CTF
controlled traffic
controlled traffic farming
A planned process which confines all machinery loads to the least possible area of permanent traffic lanes. The permanent traffic lanes are normally parallel to each other.
https://en.wikipedia.org/wiki/Controlled_traffic_farming
https://qcat.wocat.net/en/wocat/technologies/view/technologies_945/
Process which involves the selective removal of certain parts of a plant or a tree, such as branches, buds, or roots.
pruning
pruning method
pruning process
Process which involves the selective removal of certain parts of a plant or a tree, such as branches, buds, or roots.
https://en.wikipedia.org/wiki/Pruning
Process which involves cutting the plants back 6 to 12 inches above ground level.
renewal pruning process
renewal pruning
Process which involves cutting the plants back 6 to 12 inches above ground level.
https://extension.uga.edu/publications/detail.html?number=B961&title=Pruning%20Ornamental%20Plants%20in%20the%20Landscape
An agricultural experimental plot from which unwanted areas have been removed, most often the outside rows.
net plot
An agricultural experimental plot from which unwanted areas have been removed, most often the outside rows.
Huelsen, W. A. (1943). Stand irregularity and its relation to the yields of sweet corn. Journal of Agricultural Research, 67(5), 211–224. https://naldc.nal.usda.gov/download/IND43969864/PDF
http://unaab.edu.ng/wp-content/uploads/2009/12/481_PCP%20501.pdf
Agricultural experimental plot area, where the quantity measure inheres in area size, covering the field trial.
Merged with 'plot' as hasExactSynonym
obsolete_gross plot
true
Agricultural experimental plot area, where the quantity measure inheres in area size, covering the field trial.
Huelsen, W. A. (1943). Stand irregularity and its relation to the yields of sweet corn. Journal of Agricultural Research, 67(5), 211–224. https://naldc.nal.usda.gov/download/IND43969864/PDF
A measurement datum that is a unique identifier of a precise geographic location on the earth, usually expressed in alphanumeric characters
geographic coordinate system
GPS coordinates measurement datum
geo-location
geolocation
GPS coordinates
A measurement datum that is a unique identifier of a precise geographic location on the earth, usually expressed in alphanumeric characters
https://whatis.techtarget.com/definition/GPS-coordinates
A unique identifier of the postion a field on earth, usually expressed in alphanumeric characters.
field location
field geolocation
geo-location of a field
GPS coordinates of a field
Latitude coordinate of a field.
field latitude coordinate measurement datum
field latitude coordinate
Longitude coordinate of a field.
field longitude coordinate measurement datum
field longitude coordinate
An agricultural process in which rows of trees and/or shrubs are planted to create alleys within which agricultural or horticultural crops are produced.
alleycropping
hedgerow intercropping
A cropping system that involves growing crops in a wide strip, typically 6 meters in width, between lines of closely planted, fast-growing trees or shrubs.
These woody species are usually leguminous and are pruned frequently to provide a mulching material and nutrients to the crop in the alley.
alley cropping
An agricultural process in which rows of trees and/or shrubs are planted to create alleys within which agricultural or horticultural crops are produced.
https://www.fs.usda.gov/nac/practices/alley-cropping.php
An agricultural process in which the integration of trees or shurbs, pasture and grazing livestock operations on the same land is deliberate.
silvopastoral system
silvopasture
An agricultural process in which the integration of trees or shurbs, pasture and grazing livestock operations on the same land is deliberate.
https://www.fs.usda.gov/nac/practices/silvopasture.php
A perennial cropping system featuring multiple layers or strata occupied by different trees and other perennial crops.
CMSAFs
Complex multistrata agroforestry systems
multistrata agroforestry
A perennial cropping system featuring multiple layers or strata occupied by different trees and other perennial crops.
https://www.drawdown.org/solutions/multistrata-agroforestry/technical-summary
Prunings from trees (leaves, branches,...)
tree prunings
Woody species planted and left to grow during fallow.
improved fallow
Woody species planted and left to grow during fallow.
http://www.fao.org/forestry/agroforestry/89998/en/
A land-use systems and technologies where woody perennials (trees, shrubs, palms, bamboos, etc.) are deliberately used on the same land-management units as agricultural crops and/or animals, in some form of spatial arrangement or temporal sequence
agroforestry practice
agroforestry process
agroforestry technique
agroforestry
A land-use systems and technologies where woody perennials (trees, shrubs, palms, bamboos, etc.) are deliberately used on the same land-management units as agricultural crops and/or animals, in some form of spatial arrangement or temporal sequence
http://www.fao.org/forestry/agroforestry/80338/en/
A combination of crops and trees on the same land at the same time.
agrisilvicultural system
agrisilviculture
Application of water below full crop requirements compared to a control of conventional irrigation.
DI
deficit irrigation
deficit irrigation process
An irrigation process in which part of the root is exposed to drying soil and the remaining is irrigated in accordance with crop requirements and soil drying rate.
APRI
PRD
alternate partial rootzone irrigation
partial root zone drying
alternate partial rootzone irrigation process
An irrigation process in which small amounts of water are added to essentially rainfed crops during times when rainfall fails to provide sufficient moisture for normal plant growth.
SI
supplemental irrigation
An irrigation process in which small amounts of water are added to essentially rainfed crops during times when rainfall fails to provide sufficient moisture for normal plant growth.
https://www.icid.org/res_irri_supple.html
The active collection and storage of water runoff.
rainwater harvesting
water harvesting process
water harvesting
A manufactured container within which water is stored.
water tank
A vegetated area which includes strips of grass within a field or farm created for erosion control, typically they are placed along contour lines.
grass strip
A crop cultivated on a same location before the current crop.
cultivo anterior
former crop
previous crop
this class is a duplicte of the calss: agronomic fertilization process date
obsolete fertilizer application date
true
An band application in which a material entity is applied in bands on surface.
band application on surface
An band application in which a material entity is applied in bands below surface.
band application beneath surface
An broadcast application method in which a material entity is uniformly incorportated to an area.
broadcast incorporated
An broadcast application method in which a material entity is uniformly applied to the surface of an area.
broadcast on surface
Application of input into the soil close to the seed or plant.
localized application
An area density unit which is equal to the mass of an object in kilograms divided by the surface area representing a plot.
kg/plot
kilogram per plot
Agricultural experiment performed on a farm.
on farm experiment
Agricultural experiment performed on a research station.
on station experiment
Incorporation of crop residue into soil.
crop residue incorporation process
A process in which crop residue are mulched
crop residue spreading process
crop residue mulching process
A crop residue management process in which crop residue are left in the field.
crop residue retained
crop residue retention process
A crop residue management process in which crop residue are left in the field.
A crop residue removal process in which crop residue are grazed
crop residue grazing process
A crop residue removal process in which crop residue are harvested and removed from the field.
crop residue harvest process
An plot area quality inhering in a net plot. It corresponds to the plot area minus the unwanted area removed, most often the outside rows.
http://orcid.org/0000-0001-6284-4821
net plot area
An plot area quality inhering in a net plot. It corresponds to the plot area minus the unwanted area removed, most often the outside rows.
https://naldc.nal.usda.gov/download/IND43969864/PDF
Intercropping in which several rows of crops are interspersed with hedges of fast growing shrubs that are coppiced every few weeks to provide a nitrogen-rich mulch for the crop.
hedgerow intercropping
Intercropping in which several rows of crops are interspersed with hedges of fast growing shrubs that are coppiced every few weeks to provide a nitrogen-rich mulch for the crop.
Sinclair, F.L., 1999. A general classification of agroforestry practice. Agroforestry systems, 46(2), pp.161-180.
Elevation above the sea level of a field.
agricultural field altitude
farmer's field altitude
field altitude
Elevation above the sea level of a field.
https://en.wikipedia.org/wiki/Altitude
Distance between two plants in a same row.
distance between plants in a row
intrarow spacing
intra-row spacing
Type of seed variety used
seed type
seed variety type
Seed variety locally selected.
local seed variety
improved seed variety
Seed variety produced by cross-pollinated plants.
hybrid seed variety
Seed variety produced by cross-pollinated plants.
https://en.wikipedia.org/wiki/Hybrid_seed
Latitude coordinate of a weather station
weather station latitude
Longitude coordinate of a weather station.
weather station longitude
A unique identifier of the postion a weather station on earth, usually expressed in alphanumeric characters.
geo-location of a weather station
weather station GPS coordinates
GPS coordinates of a weather station
Distance between the weather station and the field.
distance between a weather station and the field
Maximum temperature of air.
temperature of air maximum
Minimum temperature of air.
temperature of air minimum
Average temperature of air.
temperature of air average
Average temperature of air over a day.
temperature of air average daily
Average temperature of air over a year.
average annual temperature
temperature of air average yearly
Average temperature of air over a month.
temperature of air average monthly
Minimum temperature of air reached in a day.
temperature of air minimum daily
Minimum temperature of air reached in a year.
temperature of air minimum yearly
Maximum temperature of air reached in a day.
temperature of air maximum daily
Maximum temperature of air reached in a year.
temperature of air maximum yearly
Humidity that correspond to moisture content of the atmosphere, expressed as a percentage of the amount of moisture that can be retained by the atmosphere at a given temperature and pressure without condensation.
relative humidity
Humidity that correspond to moisture content of the atmosphere, expressed as a percentage of the amount of moisture that can be retained by the atmosphere at a given temperature and pressure without condensation.
https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/relative-humidity
An agricultural process in which crops are cultivated following crop sequences and management techniques.
farming system
cropping system
An agricultural process in which crops are cultivated following crop sequences and management techniques.
http://extension.cropsciences.illinois.edu/handbook/pdfs/chapter05.pdf
An agricultural implement that is a small hand-propelled vehicle, usually with just one wheel, designed to be pushed and guided by a single person using two handles at the rear.
brouette
carretilla
wheelbarrow
An agricultural implement that is a small hand-propelled vehicle, usually with just one wheel, designed to be pushed and guided by a single person using two handles at the rear.
https://en.wikipedia.org/wiki/Wheelbarrow
An agricultural implement consisting of a tank and a spraying system attached to wheels.
carretilla de aspersión
wheelbarrow tank sprayers
wheeled sprayer
wheelbarrow sprayer
An implement that is a mechanical device, used to move the liquids or gases from one place to another by using mechanical action.
motobomba
motor pump
An implement that is a mechanical device, used to move the liquids or gases from one place to another by using mechanical action.
https://www.watelectrical.com/motor-pump-working-and-its-types/
An implement consisting of a broad blade fixed to a medium-length handle.
palas
pelle
shovel
An implement consisting of a broad blade fixed to a medium-length handle.
https://en.wikipedia.org/wiki/Shovel
Sprinkler able to move by its own power.
self-propelled sprinkler
An agricultural process in which furrow are build in the field.
contruction de sillons
formación de surcos
furrow design process
furrow construction process
An agricultural process in which furrow are build in the field.
https://www.fao.org/3/s8684e/s8684e04.htm
An agricultural implement that consists of a long stick ending in a point or embedded in a metal tip that can have the shape of a shovel or spatula, or a straight part and a curved part. It is used to open holes in the ground in South America.
coa
An agricultural implement that consists of a long stick ending in a point or embedded in a metal tip that can have the shape of a shovel or spatula, or a straight part and a curved part. It is used to open holes in the ground in South America.
https://herramientasagricola.com/inicio/
An agricultural implement that consist of a broad blade typically 30 to 45 centimetres long and usually under 3 millimetres thick.
machete
machette
machete
An agricultural implement that consist of a broad blade typically 30 to 45 centimetres long and usually under 3 millimetres thick.
https://en.wikipedia.org/wiki/Machete
An agricultural implement that is a traditional wooden plough.
Arado Egipcio
egyptian plow
egyptian plough
Agricultural implement consisting of either of a series of toothed wheels on one or more horizontal axles or a single large toothed wheel on a vertical axle.
herce rotative
rotary harrow
Agricultural implement consisting of either of a series of toothed wheels on one or more horizontal axles or a single large toothed wheel on a vertical axle.
https://www.thefreedictionary.com/rotary+harrow
Agricultural implement that consist of a motorized cultivator that works the soil by means of rotating tines or blades.
power tiller
rotary hoe
rotary plough
rotary plow
rotavator
rototiller
rotary tiller
Agricultural implement that consist of a motorized cultivator that works the soil by means of rotating tines or blades.
https://www.newworldencyclopedia.org/entry/Rotary_tiller
The depth at which a seed is deposited during a seeding process.
sowing depth
planting depth
seeding depth
a trench that is long, narrow, shallow and made in the ground with an agricultural implement.
furrow
a trench that is long, narrow, shallow and made in the ground with an agricultural implement.
https://www.thefreedictionary.com/furrow
A lenght quality that inheres in a furrow
furrow lenght
A planned process that aims to prevent soil erosion.
prévention de l'érosion du sol
soil conservation
soil erosion prevention process
area of soil surface covered by stones.
soil surface stoniness
area of soil surface covered by gravels.
soil surface gravelliness
The number of seasons
number of seasons
The distance between a field and the house of a farmer.
distance between field and farmer house
Fertility quality inhering in soil. Soil fertility is the ability of a soil to sustain plant growth.
soil fertility
Fertility quality inhering in soil. Soil fertility is the ability of a soil to sustain plant growth.
https://www.fao.org/global-soil-partnership/areas-of-work/soil-fertility/en/
A person that own an agricultural field.
field owner
Number of diseased plants in a plant population expressed as a number or a proportion.
disease incidence
Number of diseased plants in a plant population expressed as a number or a proportion.
https://link.springer.com/chapter/10.1007/978-3-642-85063-9_5
Area or proportion of plant tissue that is symptomatic.
disease severity
Area or proportion of plant tissue that is symptomatic.
https://link.springer.com/chapter/10.1007/978-3-642-85063-9_5
Amount of herbicide applied on a surface.
herbicide amount
herbicide application rate
herbicide quantity applied
herbicide area density
Amount of insecticide applied on a surface.
insecticide amount
insecticide aplication rate
insecticide quantity applied
insecticide area density
An agricultural process in which water is managed on an agricultural field.
hydric regime
regimen hidrico
régime hydrique
water management process
Amount of rock in an agricultural field.
field stone content
level of rocks in the field
field rockiness
Amount of rock in an agricultural field.
https://www.agronomy.org/news/science-news/between-rock-and-hard-place/
An plot area quality inhering in a net plot. It corresponds to the plot area harvested minus the unwanted area removed, most often the outside rows.
net plot area harvested
Equipment used to harvest an animal or its production which is meant for consumption.
animal harvesting equipment
Equipment used to harvest an animal or its production which is meant for consumption.
Emma Griffiths
A part of the plucking machine that moves the birds through the stages of plucking within the plucking apparatus
plucking belt
A part of the plucking machine that moves the birds through the stages of plucking within the plucking apparatus
Anoosha Sehar
A conveyor belt used to collect eggs in an industrial egg production environment.
egg collection belt
egg belt
A conveyor belt used to collect eggs in an industrial egg production environment.
Emma Griffiths
An equipment used in the transportation of an animal.
animal transportation equipment
An equipment used in the transportation of an animal.
Emma Griffiths
The lining of a box or crate used to transport chicks (juvenile chickens).
chick pad
The lining of a box or crate used to transport chicks (juvenile chickens).
Emma Griffiths
A truck used to haul dead animal from an abattoir.
dead haul truck
A truck used to haul dead animal from an abattoir.
Emma Griffiths
A truck used to haul live animals.
live haul truck
A truck used to haul live animals.
Emma Griffiths
An equipment used to feed and water livestock animals.
animal feeding equipment
An equipment used to feed and water livestock animals.
Emma Griffiths
A bowl or pan which is used to feed livestock.
feed pan
A bowl or pan which is used to feed livestock.
Emma Griffiths
A bowl from which animals can drink.
watering bowl
A bowl from which animals can drink.
Emma Griffiths
The box which is used to transport chick (juvenile chicken).
chick box
The box which is used to transport chick (juvenile chicken).
Emma Griffiths
An animal feeding equipment that has a food storage unit and which enables livestock to obtain their own food.
animal feeder
An animal feeding equipment that has a food storage unit and which enables livestock to obtain their own food.
Emma Griffiths
An animal feeding equipment that has a water storage unit which enables livestock to obtain their own water.
animal drinker
An animal feeding equipment that has a water storage unit which enables livestock to obtain their own water.
Anoosha Sehar
An agricultural process in which the intentional movement of an animal by transport occurs.
animal transport
animal transportation
transportation of animals
animal transportation process
An agricultural process in which the intentional movement of an animal by transport occurs.
https://en.wikipedia.org/wiki/Transportation_of_animals
An agricultural process in which an animal is harvested for consumption.
animal harvesting process
A carefully designed and maintained ecosystem of useful plants modelled on the structure of young natural woodland, utilising plants of direct and indirect benefit to people – often edible plants. Forest garden can be cultivated on any scale.
forest garden
A carefully designed and maintained ecosystem of useful plants modelled on the structure of young natural woodland, utilising plants of direct and indirect benefit to people – often edible plants. Forest garden can be cultivated on any scale.
Crawford, Martin (2010). Creating a Forest Garden. Green Books. https://www.agroforestry.co.uk/wp-content/uploads/product/creating-a-forest-garden-2/Creating_a_forest_garden.pdf
Start date of an experiment.
experiment start date
End date of an experiment.
experiment end date
An application method in which a material entity is applied manually.
manual application
Plant resulting from the union of scion and stock.
budded plant
grafted plant
graft
Waste material produced when an animal is processed for consumption.
animal processing waste material
Waste material produced when an animal is processed for consumption.
Waste material produced when poultry is processed for consumption.
poultry processing waste material
A fluid that leaks from a bag containing an animal carcass, and can include water, chemicals and anatomical fluids.
weep fluid
A fluid that leaks from a bag containing an animal carcass, and can include water, chemicals and anatomical fluids.
Emma Griffiths
A type of water obtained from rinsing poultry carcasses during the feather plucking process.
poultry plucking water
A type of water obtained from rinsing poultry carcasses during the feather plucking process.
Emma Griffiths
Narrow and shallow channels which are eroded into unprotected soil by hillslope runoff.
rill seedbed
A ridge seedbed with ridges that follow the contour at a spacing of usually 1 to 2 metres.
coutour ridge seedbed
A ridge seedbed with ridges that follow the contour at a spacing of usually 1 to 2 metres.
Medha Devare
A process in which plant disease is treated.
disease control process
An area density unit which is equal to the number of seeds per hectacre.
seed/ha
seed per hectare
A woody piece or part of a tree used during an agricultural process.
stick
A planned process in which a sample of soil is taken.
soil sample
soil sampling process
Date of a soil sampling process.
sampling date
soil sample date
soil sampling process date
soil sampling date
The depth at which a sample of soil is collected during a soil sampling process.
sample depth
sampling depth
soil sampling depth
Number of tillage processes over a given period.
tillage frequency
frequency of tillage process
Number of weeding processes over a given period.
weed management frequency
weeding frequency
frequency of weeding process
Number of harvesting processes over a given period.
harvesting frequency
frequency of harvesting process
1
1
An inter-cropping experiement dunring which two or more crops are grown on the same field. The planting of the second crop occurs after the first one has completed its development.
relay cropping experiment
An inter-cropping experiement dunring which two or more crops are grown on the same field. The planting of the second crop occurs after the first one has completed its development.
http://www.oisat.org/control_methods/cultural__practices/intercropping.html
A role that inheres in an organism that is harvested for food, clothing, livestock,fodder, biofuel, medicine, or other uses.
crop
crop role
A role that inheres in an organism that is harvested for food, clothing, livestock,fodder, biofuel, medicine, or other uses.
https://en.wikipedia.org/wiki/Crop
A crop role that inheres in a crop that is planted first on a land where more than one crop are planted.
first crop
first crop role
A crop role that inheres in a crop that is planted on the same field than another crop after the it has completed its development.
relay crop
relay crop role
A role that inheres in an animal that is kept by humans and trained to perform tasks.
draft animal
draught animal
working animal
draft animal role
A role that inheres in a human to power an implement.
human power role
An agricultural implement used during a weeding process
weeding implement
An agricultural implement that is used to pull out plant from the soil. A weed puller is usually manual.
weed puller
An agricultural implement that is used to cut grass or any plant that grows on the ground.
weed cutter
mower
A crop residue which is the cut stalks of cereal plants left sticking out of the ground after the grain is harvested.
stubble
A crop residue which is the cut outter shell or coating of a seed.
husk
A localized irrigation process in which water is conveyed to the soil surface as a little stream, typically from a small diameter tube or a commercially available emitter. Because the application rates generally exceed the soil infiltration rates, small basins or furrows are needed to control the water distribution on the land.
bubbler irrigation process
A localized irrigation process in which water is conveyed to the soil surface as a little stream, typically from a small diameter tube or a commercially available emitter. Because the application rates generally exceed the soil infiltration rates, small basins or furrows are needed to control the water distribution on the land.
https://www.sciencedirect.com/science/article/pii/S0167413707800175
A localized irrigation process in which water is conveyed under high pressure through small nozzles and sprayed in a fine mist of water over the plants.
mist irrigation process
A localized irrigation process in which water is conveyed under high pressure through small nozzles and sprayed in a fine mist of water over the plants.
https://futurepump.com/smallholder-irrigation-options/
A sprinkler irrigation process in which water is dispersed over the plant through a self-propelled irrigation systems with both ends of the system move at a constant speed up and down the area to irrigate.
linear move
sprinker by lateral move irrigation process
A sprinkler irrigation process in which water is dispersed over the plant through a self-propelled irrigation systems with both ends of the system move at a constant speed up and down the area to irrigate.
http://agriculture.vic.gov.au/agriculture/farm-management/soil-and-water/irrigation/centre-pivot-and-lateral-move-systems
A sprinkler irrigation process in which water is dispersed over the plant through a system long lateral pipes mounted on 1 to 3 meter wheels in diameter, the pipe serving as an axle. When the desired amount of water has been applied to an area, a gasoline engine at the centre is used to move the side roll to the next area.
wheel roll
side roll sprinkler irrigation process
A sprinkler irrigation process in which water is dispersed over the plant through a system long lateral pipes mounted on 1 to 3 meter wheels in diameter, the pipe serving as an axle. When the desired amount of water has been applied to an area, a gasoline engine at the centre is used to move the side roll to the next area.
https://energypedia.info/wiki/Sprinkler_Irrigation
A process in which mulch is removed from the soil.
mulch removal process
An environmental zone prepared for growing plants.
land arrangement
seedbed
A seedbed that is flat. Flat beds are used where water availability is adequate and there are no drainage problem.
flat bed
leveled land arrangement
leveled seedbed
flat seedbed
A seedbed that is raised-up. They are especially advantageous for clayey soils under high rainfall or wherever else drainage is likely to be poor.
raised bed
raised seedbed
A seedbed that is raised-up. They are especially advantageous for clayey soils under high rainfall or wherever else drainage is likely to be poor.
http://www.nzdl.org/gsdlmod?e=d-00000-00---off-0hdl--00-0----0-10-0---0---0direct-10---4-------0-1l--11-en-50---20-about---00-0-1-00-0--4----0-0-11-10-0utfZz-8-00&cl=CL1.16&d=HASH412cd503b5262205ac14c6.6>=1
A seedbed that is below the surrounding soil level. Sunken beds conserve water much more effectively than raised bed
sunken bed
sunken seedbed
A raised seedbed which is long and narrow with steep sides.
ridge bed
ridge seedbed
A raised seedbed that is of rounded form and limited extent.
hill bed
hill seedbed
A harvest implement for grain crops which cuts the stems and binds the stems into bundles or sheaves. The binder is now largely obsolete replaced by the combine harvester.
reaper binder
binder
A harvest implement for grain crops which cuts the stems and binds the stems into bundles or sheaves. The binder is now largely obsolete replaced by the combine harvester.
https://en.wikipedia.org/wiki/Reaper-binder
An harvest implement that compresses a cut and raked crop into compact bales.
hay baler
baler
A tillage implement that has multiple sets of vertical tines. Each set of tines is rotated on a vertical axis and tills the soil horizontally.
rotary power harrow
power harrow
An implement that is used in a mowing process.
mowing implement
The roller is an heavy agricultural tool used for flattening land or breaking up large clumps of soil, especially after ploughing or disc harrowing.
Cambridge roller
cultipacker
roller
The roller is an heavy agricultural tool used for flattening land or breaking up large clumps of soil, especially after ploughing or disc harrowing.
https://en.wikipedia.org/wiki/Roller_(agricultural_tool)
An fallow land that is set aside for a period of time and kept free from vegetation by cultivation.
bare fallow land
A pest role that inheres in an plant.
weed role
A planned process in which a seedbed is prepared to grow plants.
seedbed preparation process
A seeding process that is the random scattering of seed.
broadcasting seed process
A seeding process that is the random scattering of seed.
http://ecoursesonline.iasri.res.in/mod/page/view.php?id=101087
A seeding process during which seeds are sown in lines
line sowing process
A seeding process that consists in placing seeds in holes.
seed dibbling process
A seeding process that consists in placing seeds in holes.
http://ecoursesonline.iasri.res.in/mod/page/view.php?id=101087
A seeding process which is dropping the seeds in furrow lines in a continuous flow and covering them with soil.
drill sowing
seed drilling process
A material entity that has a fertilizer role and that is derived from animal or vegetable matter.
organic fertilizer
A material entity that has a fertilizer role and that is mined from mineral deposits or manufactured from synthetic compounds.
commercial fertilizer
mineral fertilizer
inorganic fertilizer
A compost that is the product of the decomposition process using various species of worms, usually red wigglers, white worms, and other earthworms, to create a mixture of decomposing vegetable or food waste, bedding materials, and vermicast.
vermi-compost
vermiculture
vermicompost
A compost that is the product of the decomposition process using various species of worms, usually red wigglers, white worms, and other earthworms, to create a mixture of decomposing vegetable or food waste, bedding materials, and vermicast.
https://en.wikipedia.org/wiki/Vermicompost
A vermicompost that uses earthworms.
vermicast
worm humus
worm feaces
worm manure
worm castings
A vermicompost that uses earthworms.
https://en.wikipedia.org/wiki/Vermicompost
A limestone that is derived from deposits of primarily calcium carbonate.
calcitic limestone
A limestone that is derived from deposits of calcium carbonate combined with magnesium carbonate and contains high levels of magnesium.
dolomitic limestone
A inorganic fertilizer that provides nitrogen, phosphorus, and potassium.
compound fertilizer
NPK fertilizer
An inorganic fertlizer that facilitates proper deep point placement of urea fertilizer, as urea is used as granules.
USG
urea super granule
A crop that has been harvested after an harvesting process.
harvested plant
harvested crop
A row that has been harvested.
row harvested
harvested row
A plant transplanting process that is done manual by a human being.
manual plant transplanting process
A plant transplanting process that is done mechanically.
mechanical plant transplanting process
A weeding process in which chemical is used to manage unwanted weeds.
chemical weeding process
A weeding process in which physical means such as barriers, traps and handpicking, or physical conditions like high temperature, are used to control unwanted weeds.
mechanical control weeding process
A weeding process in which extremely cold temperature are used to kill plant.
cold treatment weeding process
A weeding process in which plants are directly burned and flamed.
fire treatment weeding process
A mechanical weeding process in which unwanted organisms are removed by hands.
handweeding
hand picking weeding process
A mechanical control weeding process in wich extremely hot temperature are used to kill weeds.
heat treatment weeding process
A mechanical control weeding process in which a forceful stream of water is used to dislodge unwanted plants.
water pressure spraying weeding process
An enviromental material that has a role of fertilization
agronomic fertilizer
A organic fertilizer role that is derived from plants directly growned on the area to be fertilized.
green manure role
A fertilizer that is obtained by acid chemical attack of a phosphate rock with sulfuric acid. It contains 16 to 20% P2O5. It comes in the form of grey granules.
A product made by reaction of phosphate rock with sulfuric acid, usually containing 7 to 10% P (16 to 22% P2O5), composed of monocalcium phosphate, Ca(H2PO4)2, and gypsum, CaSO4.
SSP
normal superphosphate
ordinary superphoshate
single superphosphate
A fertilizer that is obtained by acid chemical attack of a phosphate rock with sulfuric acid. It contains 16 to 20% P2O5. It comes in the form of grey granules.
http://agropedia.iitk.ac.in/content/water-soluble-phosphatic-fertilizers
A product made by reaction of phosphate rock with sulfuric acid, usually containing 7 to 10% P (16 to 22% P2O5), composed of monocalcium phosphate, Ca(H2PO4)2, and gypsum, CaSO4.
https://doi.org/10.1002/jsfa.2740050601
https://www.soils.org/publications/soils-glossary
A fertilizer that is obtained by acid chemical attack of a phosphate rock with phosphoric acid. It contains around 46% P2O5
A product made from phosphate rock and phosphoric acid, usually containing 19 to 21% P (44 to 48% P2O5), and composed of monocalcium phosphate monohydrate, Ca(H2PO4)2 . 2H2O.
TSP
calcium dihydrogen phosphate
concentrated superphosphate
monocalcium phosphate
treble superphosphate
triple superphosphate
A fertilizer that is obtained by acid chemical attack of a phosphate rock with phosphoric acid. It contains around 46% P2O5
http://agropedia.iitk.ac.in/content/water-soluble-phosphatic-fertilizers
A product made from phosphate rock and phosphoric acid, usually containing 19 to 21% P (44 to 48% P2O5), and composed of monocalcium phosphate monohydrate, Ca(H2PO4)2 . 2H2O.
https://doi.org/10.2136/sssaj1959.03615995002300010010x
https://www.soils.org/publications/soils-glossary
A fertilizer that is produced by the condensation between urea and formaldehyde consisting of short chains from methylene-diurea to tetramethylenepentaurea. It is a slow release nitrogenous fertilize, sparingly soluble, and contains at least 35 percent total nitrogen, with at least 60 percent of the total Nitrogen as cold-water-insoluble Nitrogen (CWIN). The unreacted urea Nitrogen content is usually less than 15 percent of the total Nitrogen.
UF
ureaform
A fertilizer that is produced by the condensation between urea and formaldehyde consisting of short chains from methylene-diurea to tetramethylenepentaurea. It is a slow release nitrogenous fertilize, sparingly soluble, and contains at least 35 percent total nitrogen, with at least 60 percent of the total Nitrogen as cold-water-insoluble Nitrogen (CWIN). The unreacted urea Nitrogen content is usually less than 15 percent of the total Nitrogen.
http://www.grounds-mag.com/mag/grounds_maintenance_food_turf_slowrelease/
A fertilizer that is produced by the condensation between urea and formaldehyde consisting of short chains from methylene-diurea to tetramethylenepentaurea. It is a slow release nitrogenous fertilize, sparingly soluble. The total N content of these polymers is 39 to 40 percent, with between 25 and 60 percent of the N present as CWIN. The unreacted urea N content generally is in the range of 15 to 30 percent of the total N.
MU
methylene urea
A fertilizer that is produced by the condensation between urea and formaldehyde consisting of short chains from methylene-diurea to tetramethylenepentaurea. It is a slow release nitrogenous fertilize, sparingly soluble. The total N content of these polymers is 39 to 40 percent, with between 25 and 60 percent of the N present as CWIN. The unreacted urea N content generally is in the range of 15 to 30 percent of the total N.
http://www.grounds-mag.com/mag/grounds_maintenance_food_turf_slowrelease/
A fertilizer that is a single compound made by the condensation of 2 mols of acetaldehyde and 2 mols of urea.
CDU
crotonylidene diurea
A fertilizer that is a single compound made by the condensation of 2 mols of acetaldehyde and 2 mols of urea.
https://www.jircas.go.jp/sites/default/files/publication/jarq/03-4-001-004_0.pdf
A fertilizer that is made by coating urea with sulphur and wax to increases nitrogen efficiency.
SCU
sulfur coated urea
A fertilizer that is made by coating urea with sulphur and wax to increases nitrogen efficiency.
https://en.wikipedia.org/wiki/Coated_urea
A planned process which occurs in an agricultural field.
agricultural process
A measurement datum that is the measure of the latitude coordinate of an agricultural plot.
plot latitude
plot latitude coordinate measurement datum
A measurement datum that is the measure of the longitude coordinate of an agricultural plot.
plot longitude
plot longitude coordinate measurement datum
Proportion of residue incorporated into the soil during a residue management process.
residue incorporation percentage
Number of land levelling process
total number of land levelling passes
number of land levelling passes
The depth of a puddling process
puddling depth
The depth of a tillage process
tillage depth
Number of tillage process
total number of tillage passes
number of tillage passes
The thickness of a crop residue
crop residue thickness
Area of soil surface covered by crop residues.
crop residue percent coverage
The depth of a crop residue
residue incorporation depth
Mass of organic fertilizer applied on a given surface area.
organic amendment rate
organic fertilizer amount
organic fertilizer application rate
organic fertilizer quantity
organic fertilizer area density
Mass of inorganic fertilizer applied on a given surface area.
inorganic fertilizer amount
inorganic fertilizer quantity
inorganic fertilizer area density
The area density of a nutrient
nutrient amount
Number of fertilization process
total number of fertilizer applications
number of fertilizer applications
The area density of a mulch
mulch amount
Number of irrigation process
total number of irrigations
number of irrigations
The distance of a bund
distance between bunds
The amount of a agronomic fertilizer
obsolete fertilizer amount
true
Number of weeding process
number of weeding interventions
number of weeding process
number of weedings
The amount of a harvested crop
number of plants harvested
The amount of a harvested row
number of rows harvested
The length of a harvested row
length of rows harvested
The distance of a harvested row
space between rows harvested
The mass of a harvested crop
harvested weight
amount harvested
Number of puddling process
number of puddling operations
total number of puddling passes
number of puddling passes
The time of a conventional tillage process
conventional tillage date
The time of a reduced tillage process
reduced tillage date
The time of a conservation tillage process
conservation tillage date
The time of a puddling process
puddling date
The time of a laser land levelling process
laser land levelling date
The time of a traditional land levelling process
traditional land levelling date
The time of a crop residue burning process
crop residue burning date
The time of a crop residue spreading process
crop residue spreading date
The time of a localized irrigation process
localized irrigation date
The time of a sprinkler irrigation process
sprinkler irrigation date
The time of a sub-irrigation process
sub-irrigation date
The time of a surface irrigation process
surface irrigation date
The time of a deep tillage
deep tillage date
The time of a mulch-till
mulch-till process date
The time of a ridge-till
ridge-till process date
The time of a strip-till
strip-till process date
The time of a mechanical pest destruction process
mechanical pest destruction date
The time of a mechanical pest exclusion process
mechanical pest exclusion date
The time of a mechanical pest removal process
mechanical pest removal date
The time of a mechanical pest control process
mechanical pest control date
The time of a biological pest control process
biological pest control date
The time of a chemical pest control process
chemical pest control date
The time of a weeding process
weeding date
The time of a threshing process
threshing date
The time of a winnowing process
winnowing date
The time of a haymaking process
haymaking date
The time of a windrowing
windrowing date
The time of a baling process
baling date
The time of a trussing process
trussing date
The time of a cutting process
cutting date
The time of a lifting process
lifting date
The time of a desuckering process
desuckering date
The time of a tree topping process
tree topping date
The time of a detrashing process
detrashing date
The time of a limbing process
limbing date
The time of a drip irrigation process
drip irrigation date
The time of a pitcher irrigation process
pitcher irrigation date
The time of a subsurface drip irrigation process
subsurface drip irrigation date
The time of a subsurface textile irrigation process
subsurface textile irrigation date
The time of a bubbler irrigation process
bubbler irrigation date
The time of a mist irrigation process
mist irrigation date
The time of a center-pivot irrigation process
center-pivot irrigation date
The time of a sprinker by lateral move irrigation process
sprinker by lateral move irrigation date
The time of a side roll sprinkler irrigation process
side roll sprinkler irrigation date
The time of a bassin irrigation process
bassin irrigation date
The time of a border irrigation process
border irrigation date
The time of a furrow irrigation process
furrow irrigation date
The time of a uncontrolled flooding process
uncontrolled flooding date
The time of a continuous flood process
continuous flood date
The time of a tillage process
tillage date
The time of a heat treatment
heat treatment date
The time of a cold treatment
cold treatment date
The time of a flood treatment
flood treatment date
The time of a fire treatment
fire treatment date
The time of a steam treatment
steam treatment date
The time of a diatomaceous earth spreading
diatomaceous earth spreading date
The time of a mulching process
mulching date
The time of a using barrier process
using barrier date
The time of a trapping process
trapping date
The time of a hand picking process
hand picking date
The time of a water pressure spraying process
water pressure spraying date
The time of a insect vacuuming process
insect vacuuming date
The time of a mowing process
mowing date
The time of a soil solarization treatment
soil solarization treatment date
The time of a broadcasting seed process
broadcasting seed date
The time of a line sowing process
line sowing date
The time of a seed dibbling process
seed dibbling date
The time of a manual plant transplanting process
manual plant transplanting date
The time of a mechanical plant transplanting process
mechanical plant transplanting date
The time of a seeding process
date of crop establishement
seeding date
The time of a agricultural experiment
agricultural experiment date
The time of a long-term experiment
long-term experiment date
The time of a short-term experiment
short-term experiment date
The time of a sequence experiment
sequence experiment date
The time of a crop rotation experiment
crop rotation experiment date
The time of a mono-cropping experiment
mono-cropping experiment date
The time of a single cycle experiment
single cycle experiment date
The time of a inter-cropping experiment
inter-cropping experiment date
The time of a crop yield experiment
crop yield experiment date
The time of a rotational grazing
rotational grazing date
The time of a continuous grazing
continuous grazing date
The time of a intensive rotational grazing
intensive rotational grazing date
The time of a creep grazing
creep grazing date
The time of a first-last grazing
first-last grazing date
The time of a holistic planned grazing
holistic planned grazing date
The time of a mob grazing
mob grazing date
The time of a strip grazing
strip grazing date
The time of a controlled grazing
controlled grazing date
The time of a hohenheim grazing system
hohenheim grazing system date
The time of a seed drilling process
seed drilling date
The time of a cold treatment weeding process
cold treatment weeding date
The time of a fire treatment weeding process
fire treatment weeding date
The time of a hand picking weeding process
hand weeding date
handweeding date
timing of handweeding
hand picking weeding date
The time of a heat treatment weeding process
heat treatment weeding date
The time of a water pressure spraying weeding process
water pressure spraying weeding date
The time of a land levelling process
land levelling date
The time of a crop residue management process
crop residue management date
The time of a irrigation process
irrigation date
The time of a pest control process
pest control date
The time of a harvesting process
harvest date
harvesting date
The time of a pruning process
pruning date
pruning date
The time of a liming process
liming date
The time of a plant transplanting process
date of crop establishement
transplanting date
plant transplanting date
The time of a planting process
planting date
The time of a treatment
treatment date
The time of a propping process
propping date
The time of a storage process
storage date
The time of a crop rotation process
crop rotation sart date
The time of a sequence process
sequence start date
The time of a dessication process
dessication date
The time of a rotation phase
rotation phase start date
The time of a much removal process
much removal date
The time of a seedbed preparation process
seedbed preparation date
The time of an agronomic fertilization process
amendment application date
amendment date
fertilizer application date
agronomic fertilization date
The time of a crop cultivation process
crop cultivation date
The time of a relay cropping experiment
relay cropping experiment date
The time of a regulation of grazing
regulation of grazing date
The time of a chemical weeding process
chemical weeding date
The time of a mechanical control weeding process
mechanical control weeding date
The time of a soil analysis process
soil analysis date
The time of an experiment
experiment date
Fresh crop residue
wet crop residue
fresh crop residue
Crop residue that have been dried
dry crop residue
obsolete concentration of carbon dioxide in soil
true
obsolete A role that inheres in a material entity that is mined from mineral deposits or manufactured from synthetic compounds and that excludes carbon-containing materials except ureas.
2021-10-20T14:45:35Z
obsolete inorganic fertilizer role
true
obsolete A role that inheres in a material entity that is mined from mineral deposits or manufactured from synthetic compounds and that excludes carbon-containing materials except ureas.
https://en.wikipedia.org/wiki/Fertilizer
Fence established by planting large cuttings, that easily produce roots and on which several strings of wire are attached with the obvious purpose of keeping livestock in or out.
2021-12-24T00:21:23Z
fenceline planting
live fence
Fence established by planting large cuttings, that easily produce roots and on which several strings of wire are attached with the obvious purpose of keeping livestock in or out.
"Harvey, C.A., Villanueva, C., Villacís, J., Chacón, M., Muñoz, D., López, M., Ibrahim, M., Gómez, R., Taylor, R., Martinez, J. and Navas, A., 2005. Contribution of live fences to the ecological integrity of agricultural landscapes. Agriculture, ecosystems & environment, 111(1-4), pp.200-230. ecological integrity of agricultural landscapes"
Live fence made of trees. Boundary planting are used to delimitate property, agricultural fields, pastures, roads or any other place where fences might be located.
https://orcid.org/0000-0003-3985-4911
2021-12-27T16:54:13Z
barrier planting
trees on boundary
boundary planting
Live fence made of trees. Boundary planting are used to delimitate property, agricultural fields, pastures, roads or any other place where fences might be located.
Baker, K., Baumann, D., Michaud, J.S., van Mossel-Forrester, B., 2014. Technical Specification Boundary Planting. Registered Plan Vivo Project: The CommuniTree Carbon Project. 64p. URL: https://takingroot.org/wp-content/uploads/2015/04/takingroot-boundary-planting.pdf
Technical Specification Boundary Planting. https://takingroot.org/wp-content/uploads/2015/04/takingroot-boundary-planting.pdf
Windbreaks are linear plantings of trees and shrubs designed to enhance crop production, protect people and livestock, and benefit soil and water conservation.
2022-01-03T23:59:15Z
shelterbelt
windbreak
Windbreaks are linear plantings of trees and shrubs designed to enhance crop production, protect people and livestock, and benefit soil and water conservation.
https://www.fs.usda.gov/nac/practices/windbreaks.php
Multiple row windbreaks that are planted for both production of tree crops and environmental benefits like wind protection, soil conservation, wildlife habitat.
2022-01-04T00:11:30Z
timberbelt
Multiple row windbreaks that are planted for both production of tree crops and environmental benefits like wind protection, soil conservation, wildlife habitat.
https://www2.gov.bc.ca/assets/gov/farming-natural-resources-and-industry/agriculture-and-seafood/agricultural-land-and-environment/agroforestry/100100-3_shelterbelts.pdf
Fence where one or more rows of trees and/or shrubs are specifically planted to provide a visual screen or intercept light, odour, dust, and noise or a combination thereof.
2022-01-04T00:13:31Z
buffer
buffer planting
Fence where one or more rows of trees and/or shrubs are specifically planted to provide a visual screen or intercept light, odour, dust, and noise or a combination thereof.
https://www2.gov.bc.ca/assets/gov/farming-natural-resources-and-industry/agriculture-and-seafood/agricultural-land-and-environment/agroforestry/100100-3_shelterbelts.pdf
Tree plantings which are grown in hedgerows but have been allowed to reach their full height and width.
2022-01-04T00:23:05Z
production hedges
hedgerow trees
Tree plantings which are grown in hedgerows but have been allowed to reach their full height and width.
https://en.wikipedia.org/w/index.php?title=Hedge&oldid=1062906324
Fodder collected to provide cattle farmers with high quality fodder for the dry season.
2022-01-04T00:36:41Z
fodder bank
Fodder collected to provide cattle farmers with high quality fodder for the dry season.
https://hdl.handle.net/10568/44583
Woodlands which exist in farms.
2022-01-04T00:43:04Z
farm woodland
Woodlands which exist in farms.
BRENCHLEY, W. The Management of Farm Woodlands. Nature 146, 475 (1940). https://doi.org/10.1038/146475a0
https://smallfarmersjournal.com/an-introduction-to-farm-woodlands/
Trees which have ecological functions in landscapes like offering shelter and food sources for animals, enhancing landscape connectivity by acting as stepping stones, and functioning as nuclei for plant regeneration in disturbed landscapes.
2022-01-04T00:50:58Z
isolated trees
paddock trees
pasture trees
remnant trees
Scattered trees may enhance the provision of ecosystem services that might benefit farmers and owners of rural properties, such as pollination of crops, shading for cattle, regulation of nitrogen dynamics and carbon sequestration, herbaceous production, and wood provision.
scattered trees
Trees which have ecological functions in landscapes like offering shelter and food sources for animals, enhancing landscape connectivity by acting as stepping stones, and functioning as nuclei for plant regeneration in disturbed landscapes.
https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2664.12943
An agroforestry process where peasant farmers are permitted to seed crops between trees during the establishment phase of plantation forestry.
2022-01-04T00:56:20Z
taungya farming
An agroforestry process where peasant farmers are permitted to seed crops between trees during the establishment phase of plantation forestry.
Sinclair, F.L., 1999. A general classification of agroforestry practice. Agroforestry systems, 46(2), pp.161-180.
An agroforestry practice based on trees, shrubs and perennial plants to create a carefully designed and maintained ecosystem of useful plants modelled on the structure of young natural woodland, utilising plants of direct and indirect benefit to people.
2022-01-04T01:00:02Z
Woodland garden
forest garden
forest garden practice
An agroforestry practice based on trees, shrubs and perennial plants to create a carefully designed and maintained ecosystem of useful plants modelled on the structure of young natural woodland, utilising plants of direct and indirect benefit to people.
Crawford, Martin (2010). Creating a Forest Garden. Green Books. https://www.agroforestry.co.uk/wp-content/uploads/product/creating-a-forest-garden-2/Creating_a_forest_garden.pdf
https://www.agroforestry.co.uk/about-agroforestry/forest-gardening/
A cropping system in which relatively short periods of cultivation are followed by relatively long periods of fallow.
2022-01-04T01:04:12Z
swidden agriculture
swidden farming
shifting cultivation
A cropping system in which relatively short periods of cultivation are followed by relatively long periods of fallow.
FAO, 1982. University of Ibadan Workshop on Shifting Cultivation and Extension, in Ibadan. https://www.fao.org/3/r1340E/r1340e04.htm
https://www.cfc.umt.edu/rattan/files/Swidden%20agriculture.pdf
https://www.survivalinternational.org/about/swidden
Agroforestry practice in which grazing occurs in a forest area.
2022-01-04T01:08:02Z
plantation grazing
forest grazing
Agroforestry practice in which grazing occurs in a forest area.
https://forestry.usu.edu/news/utah-forest-facts/forest-grazing-managing-your-land-for-trees-forage-and-livestock
2
An agricultural experiment during which at least two different crops are grown at the same time.
inter-cropping experiment
A environmental material which contains living microorganisms, which, when applied to seeds, plant surfaces, or soil, colonize the rhizosphere or the interior of the plant and promotes growth by increasing the supply or availability of primary nutrients to the host plant.
bio-fertilizer
biofertilizer
A environmental material which contains living microorganisms, which, when applied to seeds, plant surfaces, or soil, colonize the rhizosphere or the interior of the plant and promotes growth by increasing the supply or availability of primary nutrients to the host plant.
https://en.wikipedia.org/wiki/Biofertilizer
Charcoal used as a soil amendment.
biochar
Charcoal used as a soil amendment.
https://en.wikipedia.org/wiki/Biochar
An animal manure composoed of the excrement of seabirds and bats.
guano
bird guano
A tillage process during which the tillage occurs at 25-30 cm depth. It can be used for deep rooted crop like pigeonpea.
deep till
deep tillage
Fish fertilizer is any fish product that is used specifically to feed plants and soil.
fish fertilizer
Process to remove unwanted plants from an area of ground.
weed control method
weed management type
weeding management type
weeding process
Inorganic fertilizer that contains nitrogen
nitrogen fertilizer
Inorganic fertilizer that contains phosphorus
phosphorus fertilizer
Inorganic fertilizer that contains potassium
potassium fertilizer
An area density quality which inheres in ammonium dihydrogen phosphate by virtue of some influence exerted by the mass of ammonium dihydrogen phosphate applied in a given surface area.
amount of ammonium dihydrogen phosphate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium dihydrogen phosphate area density
An area density quality which inheres in ammonium magnesium phosphate by virtue of some influence exerted by the mass of ammonium magnesium phosphate applied in a given surface area.
amount of ammonium magnesium phosphate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium magnesium phosphate area density
An area density quality which inheres in ammonium magnesium phosphate hexahydrate by virtue of some influence exerted by the mass of ammonium magnesium phosphate hexahydrate applied in a given surface area.
amount of ammonium magnesium phosphate hexahydrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium magnesium phosphate hexahydrate area density
An area density quality which inheres in ammonium nitrate by virtue of some influence exerted by the mass of ammonium nitrate applied in a given surface area.
amount of ammonium nitrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium nitrate area density
An area density quality which inheres in ammonium nitrate phosphate by virtue of some influence exerted by the mass of ammonium nitrate phosphate applied in a given surface area.
amount of ammonium nitrate phosphate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium nitrate phosphate area density
An area density quality which inheres in ammonium phosphate sulfate by virtue of some influence exerted by the mass of ammonium phosphate sulfate applied in a given surface area.
amount of ammonium phosphate sulfate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium phosphate sulfate area density
An area density quality which inheres in ammonium polyphosphate by virtue of some influence exerted by the mass of ammonium polyphosphate applied in a given surface area.
amount of ammonium polyphosphate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium polyphosphate area density
An area density quality which inheres in ammonium sulfate by virtue of some influence exerted by the mass of ammonium sulfate applied in a given surface area.
amount of ammonium sulfate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium sulfate area density
An area density quality which inheres in ammonium sulfate nitrate by virtue of some influence exerted by the mass of ammonium sulfate nitrate applied in a given surface area.
amount of ammonium sulfate nitrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium sulfate nitrate area density
An area density quality which inheres in ammonium sulfate urea by virtue of some influence exerted by the mass of ammonium sulfate urea applied in a given surface area.
amount of ammonium sulfate urea applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium sulfate urea area density
An area density quality which inheres in ammonium thiosulfate by virtue of some influence exerted by the mass of ammonium thiosulfate applied in a given surface area.
amount of ammonium thiosulfate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
ammonium thiosulfate area density
An area density quality which inheres in calcium ammonium nitrate by virtue of some influence exerted by the mass of calcium ammonium nitrate applied in a given surface area.
amount of calcium ammonium nitrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
calcium ammonium nitrate area density
An area density quality which inheres in calcium bis(dihydrogenphosphate) by virtue of some influence exerted by the mass of calcium bis(dihydrogenphosphate) applied in a given surface area.
amount of calcium bis(dihydrogenphosphate) applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
calcium bis(dihydrogenphosphate) area density
An area density quality which inheres in calcium carbonate by virtue of some influence exerted by the mass of calcium carbonate applied in a given surface area.
amount of calcium carbonate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
calcium carbonate area density
An area density quality which inheres in calcium cyanamide by virtue of some influence exerted by the mass of calcium cyanamide applied in a given surface area.
amount of calcium cyanamide applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
calcium cyanamide area density
An area density quality which inheres in calcium dichloride by virtue of some influence exerted by the mass of calcium dichloride applied in a given surface area.
amount of calcium dichloride applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
calcium dichloride area density
An area density quality which inheres in calcium nitrate by virtue of some influence exerted by the mass of calcium nitrate applied in a given surface area.
amount of calcium nitrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
calcium nitrate area density
An area density quality which inheres in calcium oxide by virtue of some influence exerted by the mass of calcium oxide applied in a given surface area.
amount of calcium oxide applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
calcium oxide area density
An area density quality which inheres in copper(II) sulfate by virtue of some influence exerted by the mass of copper(II) sulfate applied in a given surface area.
amount of copper(II) sulfate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
copper(II) sulfate area density
An area density quality which inheres in cyanoguanidine by virtue of some influence exerted by the mass of cyanoguanidine applied in a given surface area.
amount of cyanoguanidine applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
cyanoguanidine area density
An area density quality which inheres in diammonium hydrogen phosphate by virtue of some influence exerted by the mass of diammonium hydrogen phosphate applied in a given surface area.
amount of diammonium hydrogen phosphate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
diammonium hydrogen phosphate area density
An area density quality which inheres in gypsum by virtue of some influence exerted by the mass of gypsum applied in a given surface area.
amount of gypsum applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
gypsum area density
An area density quality which inheres in limestone by virtue of some influence exerted by the mass of limestone applied in a given surface area.
amount of limestone applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
limestone area density
An area density quality which inheres in magnesium carbonate by virtue of some influence exerted by the mass of magnesium carbonate applied in a given surface area.
amount of magnesium carbonate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
magnesium carbonate area density
An area density quality which inheres in magnesium nitrate by virtue of some influence exerted by the mass of magnesium nitrate applied in a given surface area.
amount of magnesium nitrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
magnesium nitrate area density
An area density quality which inheres in magnesium oxide by virtue of some influence exerted by the mass of magnesium oxide applied in a given surface area.
amount of magnesium oxide applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
magnesium oxide area density
An area density quality which inheres in magnesium sulfate by virtue of some influence exerted by the mass of magnesium sulfate applied in a given surface area.
amount of magnesium sulfate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
magnesium sulfate area density
An area density quality which inheres in phosphoric acid by virtue of some influence exerted by the mass of phosphoric acid applied in a given surface area.
amount of phosphoric acid applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
phosphoric acid area density
An area density quality which inheres in potassium carbonate by virtue of some influence exerted by the mass of potassium carbonate applied in a given surface area.
amount of potassium carbonate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
potassium carbonate area density
An area density quality which inheres in potassium chloride by virtue of some influence exerted by the mass of potassium chloride applied in a given surface area.
amount of potassium chloride applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
potassium chloride area density
An area density quality which inheres in potassium dihydrogen phosphate by virtue of some influence exerted by the mass of potassium dihydrogen phosphate applied in a given surface area.
amount of potassium dihydrogen phosphate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
potassium dihydrogen phosphate area density
An area density quality which inheres in potassium metaphosphate by virtue of some influence exerted by the mass of potassium metaphosphate applied in a given surface area.
amount of potassium metaphosphate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
potassium metaphosphate area density
An area density quality which inheres in potassium nitrate by virtue of some influence exerted by the mass of potassium nitrate applied in a given surface area.
amount of potassium nitrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
potassium nitrate area density
An area density quality which inheres in sodium nitrate by virtue of some influence exerted by the mass of sodium nitrate applied in a given surface area.
amount of sodium nitrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
sodium nitrate area density
An area density quality which inheres in sodium selenate by virtue of some influence exerted by the mass of sodium selenate applied in a given surface area.
amount of sodium selenate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
sodium selenate area density
An area density quality which inheres in urea by virtue of some influence exerted by the mass of urea applied in a given surface area.
amount of urea applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
urea area density
An area density quality which inheres in urea ammonium nitrate by virtue of some influence exerted by the mass of urea ammonium nitrate applied in a given surface area.
amount of urea ammonium nitrate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
urea ammonium nitrate area density
An area density quality which inheres in zinc sulfate by virtue of some influence exerted by the mass of zinc sulfate applied in a given surface area.
amount of zinc sulfate applied
Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool
zinc sulfate area density
A planned process in which fertilizer is applied to an environmental material to promote the growth of a plant.
https://orcid.org/0000-0001-6284-4821
fertilization
fertilization process
fertilizer application
agronomic fertilization process
Group together tillage and no-till processes
https://orcid.org/0000-0001-6284-4821
tillage
An experiment in which a scientific method is implemented for testing crop yield.
crop yield experiment
A planned process during which the environment of a crop plant is maintained such that the plant grows
crop cultivation process
Multiple sites within which agricultural experimental process is conducted
agricultural experimental multiplot
A planned process that has specified output a software product and that involves the creation of source code.
Mathias Brochhausen
William R. Hogan
http://en.wikipedia.org/wiki/Software_development
A planned process resulting in a software product involving the creation of source code.
software development
A measurement datum that is the output of counting.
Mathias Brochhausen
A measurement datum that is the output of counting.
count
The planned process of finding the number of elements in a finite set of objects.
Mathias Brochhausen
http://en.wikipedia.org/wiki/Counting
The planned process of finding the number of elements in a finite set of objects.
counting
software source code version control repository
A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc.
William R. Hogan
Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based
source code repository
process of compiling software
A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions.
William R. Hogan
It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).
Source code can be automatically generated to some extent, but we're assuming humans still curate it minimally. Also, in the case of Java and its JVM, it's machine interpretable instructions, not directly executable. Ditto for other languages with intermediate form like Java byte code.
compiling software
creating a data set
A planned process that has a data set as its specified output.
William R. Hogan
data set creation
dataset creation
dataset creating
entity
Entity
Julius Caesar
Verdi’s Requiem
the Second World War
your body mass index
BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
entity
entity
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
per discussion with Barry Smith
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
continuant
Continuant
An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
continuant
continuant
Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
occurrent
Occurrent
An entity that has temporal parts and that happens, unfolds or develops through time.
An entity that has temporal parts and that happens, unfolds or develops through time.
BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
occurrent
occurrent
Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
per discussion with Barry Smith
Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
ic
IndependentContinuant
a chair
a heart
a leg
a molecule
a spatial region
an atom
an orchestra.
an organism
the bottom right portion of a human torso
the interior of your mouth
A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
independent continuant
independent continuant
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
http://purl.obolibrary.org/obo/bfo/axiom/017-002
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities.
obsolete dependent continuant
true
s-region
SpatialRegion
BFO 2 Reference: Spatial regions do not participate in processes.
Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
spatial region
Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
per discussion with Barry Smith
A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
t-region
TemporalRegion
Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]
(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]
temporal region
Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
per discussion with Barry Smith
A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]
(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]
2d-s-region
TwoDimensionalSpatialRegion
an infinitely thin plane in space.
the surface of a sphere-shaped part of space
A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]
two-dimensional spatial region
A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]
st-region
SpatiotemporalRegion
the spatiotemporal region occupied by a human life
the spatiotemporal region occupied by a process of cellular meiosis.
the spatiotemporal region occupied by the development of a cancer tumor
A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
Every spatiotemporal region occupies_spatiotemporal_region itself.
Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]
spatiotemporal region
A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]
process
Process
a process of cell-division, \ a beating of the heart
a process of meiosis
a process of sleeping
the course of a disease
the flight of a bird
the life of an organism
your process of aging.
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
process
process
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
http://purl.obolibrary.org/obo/bfo/axiom/083-003
(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
disposition
Disposition
an atom of element X has the disposition to decay to an atom of element Y
certain people have a predisposition to colon cancer
children are innately disposed to categorize objects in certain ways.
the cell wall is disposed to filter chemicals in endocytosis and exocytosis
BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
disposition
b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
realizable
RealizableEntity
the disposition of this piece of metal to conduct electricity.
the disposition of your blood to coagulate
the function of your reproductive organs
the role of being a doctor
the role of this boundary to delineate where Utah and Colorado meet
A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
realizable entity
realizable entity
To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
0d-s-region
ZeroDimensionalSpatialRegion
A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]
zero-dimensional spatial region
A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]
quality
Quality
the ambient temperature of this portion of air
the color of a tomato
the length of the circumference of your waist
the mass of this piece of gold.
the shape of your nose
the shape of your nostril
a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
quality
quality
a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
sdc
SpecificallyDependentContinuant
Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
of one-sided specifically dependent continuants: the mass of this tomato
of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
the disposition of this fish to decay
the function of this heart: to pump blood
the mutual dependence of proton donors and acceptors in chemical reactions [79
the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
the pink color of a medium rare piece of grilled filet mignon at its center
the role of being a doctor
the shape of this hole.
the smell of this portion of mozzarella
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
specifically dependent continuant
specifically dependent continuant
b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
http://purl.obolibrary.org/obo/bfo/axiom/050-003
Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
per discussion with Barry Smith
(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
role
Role
John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
the priest role
the role of a boundary to demarcate two neighboring administrative territories
the role of a building in serving as a military target
the role of a stone in marking a property boundary
the role of subject in a clinical trial
the student role
A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
role
role
b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
fiat-object-part
FiatObjectPart
or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29
the FMA:regional parts of an intact human body.
the Western hemisphere of the Earth
the division of the brain into regions
the division of the planet into hemispheres
the dorsal and ventral surfaces of the body
the upper and lower lobes of the left lung
BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions
b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
fiat object
fiat object part
b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
1d-s-region
OneDimensionalSpatialRegion
an edge of a cube-shaped portion of space.
A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]
one-dimensional spatial region
A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]
object-aggregate
ObjectAggregate
a collection of cells in a blood biobank.
a swarm of bees is an aggregate of members who are linked together through natural bonds
a symphony orchestra
an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
defined by fiat: the aggregate of members of an organization
defined through physical attachment: the aggregate of atoms in a lump of granite
defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
defined via attributive delimitations such as: the patients in this hospital
the aggregate of bearings in a constant velocity axle joint
the aggregate of blood cells in your body
the nitrogen atoms in the atmosphere
the restaurants in Palo Alto
your collection of Meissen ceramic plates.
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
object aggregate
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
3d-s-region
ThreeDimensionalSpatialRegion
a cube-shaped region of space
a sphere-shaped region of space,
A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]
three-dimensional spatial region
A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]
site
Site
Manhattan Canyon)
a hole in the interior of a portion of cheese
a rabbit hole
an air traffic control region defined in the airspace above an airport
the Grand Canyon
the Piazza San Marco
the cockpit of an aircraft
the hold of a ship
the interior of a kangaroo pouch
the interior of the trunk of your car
the interior of your bedroom
the interior of your office
the interior of your refrigerator
the lumen of your gut
your left nostril (a fiat part – the opening – of your left nasal cavity)
b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]
site
b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]
object
Object
atom
cell
cells and organisms
engineered artifacts
grain of sand
molecule
organelle
organism
planet
solid portions of matter
star
BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.
BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).
BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47
BFO 2 Reference: an object is a maximal causally unified material entity
BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74
b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])
object
b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])
gdc
GenericallyDependentContinuant
The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
generically dependent continuant
b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
function
Function
the function of a hammer to drive in nails
the function of a heart pacemaker to regulate the beating of a heart through electricity
the function of amylase in saliva to break down starch into sugar
BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
function
A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
p-boundary
ProcessBoundary
the boundary between the 2nd and 3rd year of your life.
p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]
process boundary
p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]
1d-t-region
OneDimensionalTemporalRegion
the temporal region during which a process occurs.
BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).
A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]
one-dimensional temporal region
A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]
material
MaterialEntity
a flame
a forest fire
a human being
a hurricane
a photon
a puff of smoke
a sea wave
a tornado
an aggregate of human beings.
an energy wave
an epidemic
the undetached arm of a human being
An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
material entity
material entity
A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
cf-boundary
ContinuantFiatBoundary
b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions.
BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29
Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
Every continuant fiat boundary is located at some spatial region at every time at which it exists
(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]
continuant fiat boundary
b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]
immaterial
ImmaterialEntity
BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10
immaterial entity
1d-cf-boundary
OneDimensionalContinuantFiatBoundary
The Equator
all geopolitical boundaries
all lines of latitude and longitude
the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.
the median sulcus of your tongue
a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]
one-dimensional continuant fiat boundary
a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]
process-profile
ProcessProfile
On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels
One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.
The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.
b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]
process profile
b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]
r-quality
RelationalQuality
John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
a marriage bond, an instance of requited love, an obligation between one person and another.
b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]
relational quality
b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]
2d-cf-boundary
TwoDimensionalContinuantFiatBoundary
a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]
two-dimensional continuant fiat boundary
a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]
0d-cf-boundary
ZeroDimensionalContinuantFiatBoundary
the geographic North Pole
the point of origin of some spatial coordinate system.
the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet
zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]
zero-dimensional continuant fiat boundary
zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
requested by Melanie Courtot
a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]
0d-t-region
ZeroDimensionalTemporalRegion
a temporal region that is occupied by a process boundary
right now
the moment at which a child is born
the moment at which a finger is detached in an industrial accident
the moment of death.
temporal instant.
A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]
zero-dimensional temporal region
A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]
history
History
A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
history
A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
anatomical entity
organism or virus or viroid
biological entity
Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV.
electron
Elektron
beta
beta(-)
beta-particle
e
e(-)
e-
negatron
electron
electron
ChEBI
electron
IUPAC
electron
KEGG_COMPOUND
Elektron
ChEBI
beta
IUPAC
beta(-)
ChEBI
beta-particle
IUPAC
e
IUPAC
e(-)
UniProt
e-
KEGG_COMPOUND
negatron
IUPAC
A potassium salt that is the dipotassium salt of carbonic acid.
dipotassium carbonate
Carbonate of potash
Carbonic acid, dipotassium salt
K2CO3
Kaliumcarbonat
Potassium carbonate, anhydrous
potassium carbonate
dipotassium carbonate
IUPAC
Carbonate of potash
ChemIDplus
Carbonic acid, dipotassium salt
ChemIDplus
K2CO3
ChEBI
Kaliumcarbonat
ChemIDplus
Potassium carbonate, anhydrous
ChemIDplus
A compound used with herbicides that reduces the effect of the herbicide on crop plants or otherwise improves the selectivity of the herbicide for weed species over the crop plant.
herbicide safeners
herbicide safener
herbicide safeners
ChEBI
A reagent that lightens or whitens a substrate through chemical reaction. Bleaching reactions usually involve oxidative or reductive processes that degrade colour systems. Bleaching can occur by destroying one or more of the double bonds in the conjugated chain, by cleaving the conjugated chain, or by oxidation of one of the other moieties in the conjugated chain. Their reactivity results in many bleaches having strong bactericidal, disinfecting, and sterilising properties.
bleaching agent
A prodrug that, on administration, undergoes chemical conversion by biochemical (enzymatic), chemical (possibly following an enzymatic step), or physical (e.g. photochemical) activation processes before becoming the pharmacologically active pesticide for which it is a propesticide.
pro-pesticide
pro-pesticides
propesticides
propesticide
pro-pesticide
ChEBI
pro-pesticides
ChEBI
propesticides
ChEBI
A compound that, on administration, must undergo chemical conversion by biochemical (enzymatic), chemical (possibly following an enzymatic step), or physical (e.g. photochemical) activation processes before becoming the pharmacologically active herbicide for which it is a proherbicide.
pro-herbicide
pro-herbicides
proherbicides
proherbicide
pro-herbicide
ChEBI
pro-herbicides
ChEBI
proherbicides
ChEBI
A compound that, on administration, undergoes conversion by biochemical (enzymatic), chemical (possibly following an enzymatic step), or physical (e.g. photochemical) activation processes before becoming the active agent for which it is a pro-agent.
pro-agents
proagent
proagents
pro-agent
pro-agents
ChEBI
proagent
ChEBI
proagents
ChEBI
An atom of an element that exhibits properties that are between those of metals and nonmetals, or that has a mixture of them. The term generally includes boron, silicon, germanium, arsenic, antimony, and tellurium, while carbon, aluminium, selenium, polonium, and astatine are less commonly included.
metalloid
metalloids
metalloid atom
metalloid
ChEBI
metalloids
ChEBI
A Bronsted acid derived from one or more inorganic compounds. Inorganic acids (also known as mineral acids) form hydrons and conjugate base ions when dissolved in water.
inorganic acids
mineral acid
mineral acids
inorganic acid
inorganic acids
ChEBI
mineral acid
ChEBI
mineral acids
ChEBI
Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).
gas molecular entities
gaseous molecular entities
gaseous molecular entity
gas molecular entity
gas molecular entities
ChEBI
gaseous molecular entities
ChEBI
gaseous molecular entity
ChEBI
A cyclic tetrapyrrole anion that is the carbanion obtained by removal of the acidic proton from position 21 of any chlorophyll. Major species at pH 7.3
a chlorophyll
chlorophyll(1-)
a chlorophyll
UniProt
An isotopically modified compound in which the abundance of a (13)C isotope at one or more positions has been increased above that of the naturally occurring level.
(13)C-enriched compound
(13)C-enriched compounds
(13)C-labeled compound
(13)C-labeled compounds
(13)C-labelled compound
(13)C-labelled compounds
(13)C-modified compounds
(13)C-modified compound
(13)C-enriched compound
ChEBI
(13)C-enriched compounds
ChEBI
(13)C-labeled compound
ChEBI
(13)C-labeled compounds
ChEBI
(13)C-labelled compound
ChEBI
(13)C-labelled compounds
ChEBI
(13)C-modified compounds
ChEBI
Any molecular entity in which the isotopic ratio of nuclides for at least one element deviates measurably from that occurring in nature. The term includes both isotopically substituted compounds (in which essentially all the molecules of the compound have only the indicated nuclide(s) at each designated position) and isotopically labeled compounds (a formal mixture of an isotopically unmodified compound with one or more analogous isotopically substituted compound(s).
isotopically modified compounds
isotopically modified compound
isotopically modified compounds
ChEBI
carbamate
Carbamat
Karbamat
carbamate ion
carbamic acid, ion(1-)
carbamate
carbamate
IUPAC
carbamate
UniProt
Carbamat
ChEBI
Karbamat
ChEBI
carbamate ion
ChemIDplus
carbamic acid, ion(1-)
ChemIDplus
A chemical compound that causes a substantial proportion of exposed people or animals to develop an allergic reaction in normal tissue after repeated exposure to the compound.
sensitisers
sensitizer
sensitizers
sensitiser
sensitisers
ChEBI
sensitizer
ChEBI
sensitizers
ChEBI
A mixture of ammonium sulfate and ammonium nitrate used as a feriliser to provide both nitrogen and sulfur nutrients.
SULFAN
Saletrosan
ammonium sulfate nitrate
SULFAN
ChEBI
Saletrosan
ChEBI
An inorganic ammonium salt composed of ammonium and thiosulfate ions in a 2:1 ratio. It is used in the leaching of gold and silver, as a fertilizer and as a photographic fixing salt.
ammonium thiosulfate
diammonium sulfurothioate
ATS
Thio-Sul
ammo hypo
ammonium hyposulfite
ammonium thiosulphate
bisammonium sulfurothioate
diammonium thiosulfate
diammonium thiosulphate
thiosulfuric acid diammonium salt
ammonium thiosulfate
ammonium thiosulfate
ChemIDplus
diammonium sulfurothioate
IUPAC
ATS
ChEBI
Thio-Sul
ChemIDplus
ammo hypo
ChemIDplus
ammonium hyposulfite
ChemIDplus
ammonium thiosulphate
ChemIDplus
bisammonium sulfurothioate
IUPAC
diammonium thiosulfate
ChemIDplus
diammonium thiosulphate
ChEBI
thiosulfuric acid diammonium salt
ChemIDplus
inorganic ammonium salts
inorganic ammonium salt
inorganic ammonium salts
ChEBI
An inorganic ammonium salt of polyphosphate. It is used as a flame retardant and as a fertilizer. The chain length (n) of this polymer is variable and can be linear or branched.
ammonium polyphosphate
AP 422
AP 462
APP
APP 422
Albaplas AP 95
Amgard CL
Amgard MC
Amgard TR
Antiblaze MC
Antiblaze MCM
Budit 3076
Budit 3076DC
Budit 3077
Budit 365
DFP-I
Exolit 263
Exolit 422
Exolit 442
Exolit 454
Exolit 455
Exolit 462
Exolit 470
Exolit AP 422
Exolit AP 423
Exolit AP 462
FR-Cros 480
FR-Cros 484
Fire-Trol LCG-R
Flameguard PT 8
Hostaflam 423
Hostaflam AP 420
Hostaflam AP 422
Hostaflam AP 462
Hostaflam AP 464
Hostaflam TP-AP 751
Hostaflam TP-AP 752
Novawhite
Phos-Chek P 30
Phos-Chek P 40
Phos-Chek P 60
Poly-N 10-34-0
Poly-N 11-37-0
Sumisafe
Taien A
Taien H
polyphosphoric acid ammonium salt
ammonium polyphosphate
ammonium polyphosphate
ChemIDplus
AP 422
ChemIDplus
AP 462
ChemIDplus
APP
ChEBI
APP 422
ChemIDplus
Albaplas AP 95
ChemIDplus
Amgard CL
ChemIDplus
Amgard MC
ChemIDplus
Amgard TR
ChemIDplus
Antiblaze MC
ChemIDplus
Antiblaze MCM
ChemIDplus
Budit 3076
ChemIDplus
Budit 3076DC
ChemIDplus
Budit 3077
ChemIDplus
Budit 365
ChemIDplus
DFP-I
ChemIDplus
Exolit 263
ChemIDplus
Exolit 422
ChemIDplus
Exolit 442
ChemIDplus
Exolit 454
ChemIDplus
Exolit 455
ChemIDplus
Exolit 462
ChemIDplus
Exolit 470
ChemIDplus
Exolit AP 422
ChemIDplus
Exolit AP 423
ChemIDplus
Exolit AP 462
ChemIDplus
FR-Cros 480
ChemIDplus
FR-Cros 484
ChemIDplus
Fire-Trol LCG-R
ChemIDplus
Flameguard PT 8
ChemIDplus
Hostaflam 423
ChemIDplus
Hostaflam AP 420
ChemIDplus
Hostaflam AP 422
ChemIDplus
Hostaflam AP 462
ChemIDplus
Hostaflam AP 464
ChemIDplus
Hostaflam TP-AP 751
ChemIDplus
Hostaflam TP-AP 752
ChemIDplus
Novawhite
ChemIDplus
Phos-Chek P 30
ChemIDplus
Phos-Chek P 40
ChemIDplus
Phos-Chek P 60
ChemIDplus
Poly-N 10-34-0
ChemIDplus
Poly-N 11-37-0
ChemIDplus
Sumisafe
ChemIDplus
Taien A
ChemIDplus
Taien H
ChemIDplus
polyphosphoric acid ammonium salt
ChemIDplus
An inorganic sulfate salt obtained by reaction of sulfuric acid with one equivalent of ammonium phosphate.
ammonium dihydrogen phosphate hydrogen sulfate
ammonium phosphate sulphate
diammonium phosphate sulfate
diammonium phosphate sulphate
ammonium phosphate sulfate
ammonium dihydrogen phosphate hydrogen sulfate
IUPAC
ammonium phosphate sulphate
ChEBI
diammonium phosphate sulfate
ChEBI
diammonium phosphate sulphate
ChemIDplus
A mixture that contains ammonium nitrate mixed with potash and/or phosphate. It is used in the fertilizer industry. Such high analysis mixtures i.e., rich in nitrogen and phosphorus, can be applied directly to the soil or can be mixed with other fertilizer ingredients to provide a complete fertilizer.
ANP
ammonium nitrate fertilizers, with phosphate or potash
ammonium nitrate phosphate
ANP
ChEBI
ammonium nitrate fertilizers, with phosphate or potash
ChemIDplus
A guanidine in which one of the amino hydrogens of guanidine itself is substituted by a cyano group. It is used in the manufacture of fertilizers, pharmaceuticals, explosives, oil well drilling muds, and dyestuffs.
1-cyanoguanidine
2-cyanoguanidine
ACR-H 3636
AI3-14632
Adeka EH 3636
Adeka EH 3636AS
Araldite HT 986
Araldite XB 2879B
Araldite XB 2979B
Bakelite VE 2560
DCD
DICY
Dyhard 100S
Epicure DICY 15
Epicure DICY 7
N-cyanoguanidine
Pyroset DO
XB 2879B
dicyandiamide
dicyandiamido
dicyandiamin
dicyanodiamide
guanidine-1-carbonitrile
cyanoguanidine
1-cyanoguanidine
IUPAC
2-cyanoguanidine
ChemIDplus
ACR-H 3636
ChemIDplus
AI3-14632
ChemIDplus
Adeka EH 3636
ChEBI
Adeka EH 3636AS
ChEBI
Araldite HT 986
ChemIDplus
Araldite XB 2879B
ChemIDplus
Araldite XB 2979B
ChemIDplus
Bakelite VE 2560
ChemIDplus
DCD
ChEBI
DICY
ChEBI
Dyhard 100S
ChEBI
Epicure DICY 15
ChemIDplus
Epicure DICY 7
ChemIDplus
N-cyanoguanidine
IUPAC
Pyroset DO
ChemIDplus
XB 2879B
ChemIDplus
dicyandiamide
ChemIDplus
dicyandiamido
ChemIDplus
dicyandiamin
ChemIDplus
dicyanodiamide
ChemIDplus
guanidine-1-carbonitrile
NIST_Chemistry_WebBook
A phosphate salt obtained by reacting 3,4-dimethyl-1H-pyrazole with one equivalent of phosphoric acid. It is a nitrification inhibitor and when used on crops, it prevents nitrogen loss from soil, increases nitrogen use efficiency, and boosts crop yields.
3,4-dimethyl-1H-pyrazole phosphate
3,4-DMPP
3,4-dimethyl-1H-pyrazole monophosphate
3,4-dimethylpyrazole phosphate
DMPP
Entec
3,4-dimethyl-1H-pyrazole phosphate
3,4-dimethyl-1H-pyrazole phosphate
IUPAC
3,4-DMPP
ChEBI
3,4-dimethyl-1H-pyrazole monophosphate
ChEBI
3,4-dimethylpyrazole phosphate
ChEBI
DMPP
ChEBI
Entec
ChEBI
Any inhibitor added to nitrogen fertilizers which can reduce the rate at which ammonium is converted to nitrate. Under appropriate conditions, this can help reduce nitrogen losses through denitrification and leaching.
nitrification inhibitors
nitrification inhibitor
nitrification inhibitors
ChEBI
A member of the class of pyrazoles that is 1H-pyrazole which is substituted by methyl groups at positions 3 and 4.
3,4-dimethyl-1H-pyrazole
3(5),4-dimethylpyrazole
3,4-dimethylpyrazole
3,4-dimethyl-1H-pyrazole
3,4-dimethyl-1H-pyrazole
IUPAC
3(5),4-dimethylpyrazole
ChemIDplus
3,4-dimethylpyrazole
ChEBI
A potassium salt of metaphosphoric acid.
potassium oxophosphinate
metaphosphoric acid potassium salt
monopotassium metaphosphate
potassium metaphosphate
potassium oxophosphinate
IUPAC
metaphosphoric acid potassium salt
ChemIDplus
monopotassium metaphosphate
ChEBI
An inorganic phosphate that is the ammonium magnesium salt of phosphoric acid.
ammonium magnesium phosphate
ammonium magnesium orthophosphate
azanium magnesium phosphate
magnesium(2+) ammonium phosphate
phosphoric acid, ammonium magnesium salt
ammonium magnesium phosphate
ammonium magnesium phosphate
IUPAC
ammonium magnesium orthophosphate
ChemIDplus
azanium magnesium phosphate
ChEBI
magnesium(2+) ammonium phosphate
ChEBI
phosphoric acid, ammonium magnesium salt
ChemIDplus
A hydrate that is the hexahydrate form of ammonium magnesium phosphate. It is a constituent of urinary calculi.
ammonium magnesium phosphate--water (1/6)
azanium magnesium phosphate hexahydrate
guanite
magnesium ammonium phosphate hexahydrate
struvite
ammonium magnesium phosphate hexahydrate
ammonium magnesium phosphate--water (1/6)
IUPAC
azanium magnesium phosphate hexahydrate
ChEBI
guanite
ChEBI
magnesium ammonium phosphate hexahydrate
ChemIDplus
struvite
ChemIDplus
Any agent that induces nausea and vomiting.
emetics
emetic
emetics
ChEBI
electron donor
A divalent inorganic anion obtained by removal of both protons from selenic acid.
Selenate
selenate
tetraoxidoselenate(2-)
SELENATE ION
[SeO4](2-)
selenate
Selenate
ChemIDplus
selenate
IUPAC
selenate
UniProt
tetraoxidoselenate(2-)
IUPAC
SELENATE ION
PDBeChem
[SeO4](2-)
IUPAC
A divalent inorganic anion obtained by removal of both protons from hydrogen sulfide.
sulfanediide
sulfide(2-)
S(2-)
Sulfide
sulphide
sulfide(2-)
sulfanediide
IUPAC
sulfide(2-)
IUPAC
S(2-)
IUPAC
Sulfide
ChemIDplus
sulphide
ChEBI
A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity.
Acceptor
A
Akzeptor
Hydrogen-acceptor
Oxidized donor
accepteur
acceptor
Acceptor
KEGG_COMPOUND
A
KEGG_COMPOUND
Akzeptor
ChEBI
Hydrogen-acceptor
KEGG_COMPOUND
Oxidized donor
KEGG_COMPOUND
accepteur
ChEBI
An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms
WATER
Water
oxidane
water
BOUND WATER
H2O
HOH
Wasser
[OH2]
acqua
agua
aqua
dihydridooxygen
dihydrogen oxide
eau
hydrogen hydroxide
water
WATER
PDBeChem
Water
KEGG_COMPOUND
oxidane
IUPAC
water
IUPAC
BOUND WATER
PDBeChem
H2O
KEGG_COMPOUND
H2O
UniProt
HOH
ChEBI
Wasser
ChEBI
[OH2]
IUPAC
acqua
ChEBI
agua
ChEBI
aqua
ChEBI
dihydridooxygen
IUPAC
dihydrogen oxide
IUPAC
eau
ChEBI
hydrogen hydroxide
ChEBI
dioxygen
A monoatomic monoanion resulting from the addition of an electron to any halogen atom.
halide ions
HX
Halide
a halide anion
halide anions
halide(1-)
halides
halogen anion
halide anion
halide ions
IUPAC
HX
KEGG_COMPOUND
Halide
KEGG_COMPOUND
a halide anion
UniProt
halide anions
ChEBI
halide(1-)
ChEBI
halides
ChEBI
halogen anion
ChEBI
A divalent inorganic anion obtained by removal of both protons from thiosulfuric acid.
sulfurothioate
thiosulfate
trioxidosulfidosulfate(2-)
Hyposulfite
S2O3
S2O3(2-)
TETRATHIONATE
Thiosulfate
[SO3S](2-)
thiosulfate ion(2-)
thiosulphate
trioxido-1kappa(3)O-disulfate(S--S)(2-)
thiosulfate(2-)
sulfurothioate
IUPAC
thiosulfate
IUPAC
trioxidosulfidosulfate(2-)
IUPAC
Hyposulfite
KEGG_COMPOUND
S2O3
ChEBI
S2O3(2-)
IUPAC
TETRATHIONATE
PDBeChem
Thiosulfate
KEGG_COMPOUND
[SO3S](2-)
IUPAC
thiosulfate ion(2-)
ChemIDplus
thiosulphate
ChemIDplus
trioxido-1kappa(3)O-disulfate(S--S)(2-)
IUPAC
An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms.
AMMONIA
Ammonia
ammonia
azane
Ammoniak
NH3
R-717
[NH3]
ammoniac
amoniaco
spirit of hartshorn
ammonia
AMMONIA
PDBeChem
Ammonia
KEGG_COMPOUND
ammonia
IUPAC
azane
IUPAC
Ammoniak
ChemIDplus
NH3
IUPAC
NH3
KEGG_COMPOUND
NH3
UniProt
R-717
ChEBI
[NH3]
MolBase
ammoniac
ChEBI
amoniaco
ChEBI
spirit of hartshorn
ChemIDplus
A sulfur hydride consisting of a single sulfur atom bonded to two hydrogen atoms. A highly poisonous, flammable gas with a characteristic odour of rotten eggs, it is often produced by bacterial decomposition of organic matter in the absence of oxygen.
Hydrogen sulfide
dihydridosulfur
dihydrogen(sulfide)
hydrogen sulfide
sulfane
H2S
HYDROSULFURIC ACID
Hydrogen-sulfide
Schwefelwasserstoff
Sulfide
[SH2]
acide sulfhydrique
dihydrogen monosulfide
dihydrogen sulfide
hydrogen monosulfide
hydrogen sulphide
hydrogene sulfure
sulfure d'hydrogene
hydrogen sulfide
Hydrogen sulfide
KEGG_COMPOUND
dihydridosulfur
IUPAC
dihydrogen(sulfide)
IUPAC
hydrogen sulfide
IUPAC
sulfane
IUPAC
H2S
IUPAC
H2S
KEGG_COMPOUND
HYDROSULFURIC ACID
PDBeChem
Hydrogen-sulfide
KEGG_COMPOUND
Schwefelwasserstoff
ChemIDplus
Sulfide
KEGG_COMPOUND
[SH2]
MolBase
acide sulfhydrique
ChemIDplus
dihydrogen monosulfide
NIST_Chemistry_WebBook
dihydrogen sulfide
NIST_Chemistry_WebBook
hydrogen monosulfide
NIST_Chemistry_WebBook
hydrogen sulphide
ChemIDplus
hydrogene sulfure
ChemIDplus
sulfure d'hydrogene
ChEBI
A sulfur oxoanion obtained by deprotonation of both OH groups of sulfuric acid.
Sulfate
sulfate
tetraoxidosulfate(2-)
tetraoxosulfate(2-)
tetraoxosulfate(VI)
SO4(2-)
SULFATE ION
Sulfate anion(2-)
Sulfate dianion
Sulfate(2-)
Sulfuric acid ion(2-)
[SO4](2-)
sulphate
sulphate ion
sulfate
Sulfate
KEGG_COMPOUND
sulfate
IUPAC
sulfate
UniProt
tetraoxidosulfate(2-)
IUPAC
tetraoxosulfate(2-)
IUPAC
tetraoxosulfate(VI)
IUPAC
SO4(2-)
IUPAC
SULFATE ION
PDBeChem
Sulfate anion(2-)
HMDB
Sulfate dianion
HMDB
Sulfate(2-)
HMDB
Sulfuric acid ion(2-)
HMDB
[SO4](2-)
IUPAC
sulphate
ChEBI
sulphate ion
ChEBI
A carbonyl group with two C-bound amine groups. The commercially available fertilizer has an analysis of 46-0-0 (N-P2O5-K2O).
UREA
Urea
urea
1728
Carbamide
E927b
H2NC(O)NH2
Harnstoff
Karbamid
carbamide
carbonyldiamide
ur
uree
urea
UREA
PDBeChem
Urea
KEGG_COMPOUND
urea
IUPAC
urea
UniProt
1728
PPDB
Carbamide
KEGG_COMPOUND
E927b
ChEBI
H2NC(O)NH2
ChEBI
Harnstoff
NIST_Chemistry_WebBook
Karbamid
ChEBI
carbamide
ChEBI
carbonyldiamide
NIST_Chemistry_WebBook
ur
IUPAC
uree
ChEBI
hydridooxygenate(1-)
hydroxide
oxidanide
HO-
HYDROXIDE ION
Hydroxide ion
OH(-)
OH-
hydroxide
hydridooxygenate(1-)
IUPAC
hydroxide
IUPAC
oxidanide
IUPAC
HO-
KEGG_COMPOUND
HYDROXIDE ION
PDBeChem
Hydroxide ion
KEGG_COMPOUND
OH(-)
IUPAC
OH-
KEGG_COMPOUND
nitrite
carbon dioxide
A nitrile that is hydrogen cyanide in which the hydrogen has been replaced by an amino group.
CYANAMIDE
Cyanamide
cyanamide
Carbodiimide
H2N-C#N
NH2CN
amidocyanogen
carbamonitrile
cyanoamine
cyanamide
CYANAMIDE
PDBeChem
Cyanamide
KEGG_COMPOUND
cyanamide
IUPAC
cyanamide
UniProt
Carbodiimide
KEGG_COMPOUND
H2N-C#N
ChEBI
NH2CN
ChEBI
amidocyanogen
ChEBI
carbamonitrile
ChEBI
cyanoamine
ChEBI
A mineral that is an inorganic nutrient which must be ingested and absorbed in adequate amounts to satisfy a wide range of essential metabolic and/or structural functions in the human body.
mineral nutrient
mineral nutrients
nutrient mineral
nutrient minerals
mineral nutrient
mineral nutrient
ChEBI
mineral nutrients
ChEBI
nutrient mineral
ChEBI
nutrient minerals
ChEBI
The phosphorus oxoanion formed from polyphosphoric acid by proton loss from each of the phosphate units. The major species at pH 7.3.
polyphosphate
(Phosphate)n
(Phosphate)n+1
(Phosphate)n-1
polyphosphate
polyphosphate
UniProt
(Phosphate)n
KEGG_COMPOUND
(Phosphate)n+1
KEGG_COMPOUND
(Phosphate)n-1
KEGG_COMPOUND
carbon monoxide
A pseudohalide anion that is the conjugate base of hydrogen cyanide.
Cyanide
cyanide
nitridocarbonate(1-)
CN(-)
CN-
CYANIDE ION
Prussiate
Zyanid
cyanide
Cyanide
ChEBI
Cyanide
KEGG_COMPOUND
cyanide
IUPAC
nitridocarbonate(1-)
IUPAC
CN(-)
IUPAC
CN-
KEGG_COMPOUND
CYANIDE ION
PDBeChem
Prussiate
KEGG_COMPOUND
Zyanid
ChEBI
The carbon oxoanion resulting from the removal of a proton from carbonic acid.
Hydrogencarbonate
hydrogen(trioxidocarbonate)(1-)
hydrogencarbonate
hydrogencarbonate(1-)
hydrogentrioxocarbonate(1-)
hydrogentrioxocarbonate(IV)
hydroxidodioxidocarbonate(1-)
Acid carbonate
BICARBONATE ION
Bicarbonate
HCO3(-)
HCO3-
[CO2(OH)](-)
hydrogen carbonate
hydrogencarbonate
Hydrogencarbonate
KEGG_COMPOUND
hydrogen(trioxidocarbonate)(1-)
IUPAC
hydrogencarbonate
IUPAC
hydrogencarbonate
UniProt
hydrogencarbonate(1-)
IUPAC
hydrogentrioxocarbonate(1-)
IUPAC
hydrogentrioxocarbonate(IV)
IUPAC
hydroxidodioxidocarbonate(1-)
IUPAC
Acid carbonate
KEGG_COMPOUND
BICARBONATE ION
PDBeChem
Bicarbonate
KEGG_COMPOUND
HCO3(-)
IUPAC
HCO3-
KEGG_COMPOUND
[CO2(OH)](-)
IUPAC
hydrogen carbonate
PDBeChem
A nitrogen oxoanion formed by loss of a proton from nitric acid. Principal species present at pH 7.3.
nitrate
trioxidonitrate(1-)
trioxonitrate(1-)
trioxonitrate(V)
NITRATE ION
NO3
NO3(-)
[NO3](-)
nitrate(1-)
nitrate
nitrate
IUPAC
nitrate
UniProt
trioxidonitrate(1-)
IUPAC
trioxonitrate(1-)
IUPAC
trioxonitrate(V)
IUPAC
NITRATE ION
PDBeChem
NO3
ChEBI
NO3(-)
IUPAC
[NO3](-)
IUPAC
nitrate(1-)
ChemIDplus
A mononuclear parent hydride consisting of covalently bonded hydrogen and chlorine atoms.
Hydrogen chloride
chlorane
chloridohydrogen
hydrogen chloride
Chlorwasserstoff
HCl
Hydrochloride
Hydrogenchlorid
Wasserstoffchlorid
[HCl]
chlorure d'hydrogene
cloruro de hidrogeno
hydrochloric acid
hydrogen chloride
Hydrogen chloride
KEGG_COMPOUND
chlorane
IUPAC
chloridohydrogen
IUPAC
hydrogen chloride
IUPAC
Chlorwasserstoff
ChEBI
HCl
KEGG_COMPOUND
Hydrochloride
KEGG_COMPOUND
Hydrogenchlorid
ChEBI
Wasserstoffchlorid
ChEBI
[HCl]
IUPAC
chlorure d'hydrogene
ChEBI
cloruro de hidrogeno
ChEBI
hydrochloric acid
ChemIDplus
A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity.
Donor
Donator
donneur
donor
Donor
KEGG_COMPOUND
Donator
ChEBI
donneur
ChEBI
A halide anion formed when chlorine picks up an electron to form an an anion.
Chloride
chloride
chloride(1-)
CHLORIDE ION
Chloride ion
Chloride(1-)
Chlorine anion
Cl(-)
Cl-
chloride
Chloride
KEGG_COMPOUND
chloride
IUPAC
chloride
UniProt
chloride(1-)
IUPAC
CHLORIDE ION
PDBeChem
Chloride ion
KEGG_COMPOUND
Chloride(1-)
ChemIDplus
Chlorine anion
NIST_Chemistry_WebBook
Cl(-)
IUPAC
Cl-
KEGG_COMPOUND
An elemental molecule consisting of two trivalently-bonded nitrogen atoms.
dinitrogen
N#N
N2
Nitrogen
molecular nitrogen
dinitrogen
dinitrogen
IUPAC
N#N
ChEBI
N2
IUPAC
N2
KEGG_COMPOUND
N2
UniProt
Nitrogen
KEGG_COMPOUND
molecular nitrogen
ChEBI
hydrogen halide
hydrogen halides
HX
hydrogen halides
hydrogen halide
hydrogen halide
IUPAC
hydrogen halides
IUPAC
HX
UniProt
hydrogen halides
ChEBI
Selenic acid
dihydroxidodioxidoselenium
selenic acid
H2SeO4
[SeO2(OH)2]
selenic acid
Selenic acid
KEGG_COMPOUND
dihydroxidodioxidoselenium
IUPAC
selenic acid
IUPAC
H2SeO4
IUPAC
[SeO2(OH)2]
IUPAC
A solution of ammonia in water.
Ammonium hydroxide
ammonium hydroxide
Ammoniumhydroxid
E527
NH4OH
agua de amoniaco
ammonia aqueous
ammonia solution
ammonia water
ammoniaque
hidroxido de amonio
hydroxyde d'ammonium
ammonium hydroxide
Ammonium hydroxide
KEGG_COMPOUND
ammonium hydroxide
IUPAC
Ammoniumhydroxid
ChEBI
E527
ChEBI
NH4OH
ChEBI
agua de amoniaco
ChEBI
ammonia aqueous
ChemIDplus
ammonia solution
ChemIDplus
ammonia water
ChemIDplus
ammoniaque
ChEBI
hidroxido de amonio
ChEBI
hydroxyde d'ammonium
ChEBI
An iron group element atom that has atomic number 26.
iron
26Fe
Eisen
Fe
Iron
fer
ferrum
hierro
iron
iron atom
iron
IUPAC
26Fe
IUPAC
Eisen
ChEBI
Fe
IUPAC
Fe
UniProt
Iron
KEGG_COMPOUND
fer
ChEBI
ferrum
IUPAC
hierro
ChEBI
iron
ChEBI
dihydrogen
manganese
25Mn
Mangan
Manganese
Mn
manganese
manganeso
manganum
manganese atom
manganese
IUPAC
25Mn
IUPAC
Mangan
NIST_Chemistry_WebBook
Manganese
KEGG_COMPOUND
Mn
IUPAC
Mn
UniProt
manganese
ChEBI
manganeso
ChEBI
manganum
ChEBI
A phosphate ion that is the conjugate base of hydrogenphosphate.
phosphate
tetraoxidophosphate(3-)
tetraoxophosphate(3-)
tetraoxophosphate(V)
Orthophosphate
PHOSPHATE ION
PO4(3-)
Phosphate
[PO4](3-)
phosphate(3-)
phosphate
IUPAC
tetraoxidophosphate(3-)
IUPAC
tetraoxophosphate(3-)
IUPAC
tetraoxophosphate(V)
IUPAC
Orthophosphate
KEGG_COMPOUND
PHOSPHATE ION
PDBeChem
PO4(3-)
IUPAC
Phosphate
KEGG_COMPOUND
[PO4](3-)
IUPAC
A compound having the structure RC#N; thus a C-substituted derivative of hydrocyanic acid, HC#N. In systematic nomenclature, the suffix nitrile denotes the triply bound #N atom, not the carbon atom attached to it.
Nitrile
nitrile
nitriles
Nitril
R-CN
a nitrile
nitrilos
nitrile
Nitrile
KEGG_COMPOUND
nitrile
IUPAC
nitriles
IUPAC
Nitril
ChEBI
R-CN
KEGG_COMPOUND
a nitrile
UniProt
nitrilos
IUPAC
A one-carbon compound consisting of a methine group triple bonded to a nitrogen atom
Hydrogen cyanide
hydridonitridocarbon
hydrogen cyanide
hydrogen(nitridocarbonate)
methanenitrile
Blausaeure
Cyanwasserstoff
HCN
[CHN]
formonitrile
hydrocyanic acid
hydrogen cyanide
Hydrogen cyanide
KEGG_COMPOUND
hydridonitridocarbon
IUPAC
hydrogen cyanide
IUPAC
hydrogen cyanide
UniProt
hydrogen(nitridocarbonate)
IUPAC
methanenitrile
IUPAC
Blausaeure
ChEBI
Cyanwasserstoff
NIST_Chemistry_WebBook
HCN
KEGG_COMPOUND
[CHN]
IUPAC
formonitrile
IUPAC
hydrocyanic acid
NIST_Chemistry_WebBook
sulfur dioxide
A calcium salt that lacks C-H bonds
inorganic calcium salt
A magnesium salt with C-H bonds
organic magnesium salt
A phosphate salt that lacks C-H bonds
inorganic phosphate salt
A potassium salt that lacks C-H bonds
inorganic potassium salt
A substance used to destroy pests of the subclass Acari (mites and ticks).
Akarizid
Akarizide
acaricides
miticide
acaricide
Akarizid
ChEBI
Akarizide
ChEBI
acaricides
ChEBI
miticide
ChEBI
An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids.
acyl group
alkanoyl
acyl groups
alkanoyl group
groupe acyle
acyl group
acyl group
IUPAC
alkanoyl
IUPAC
acyl groups
ChEBI
alkanoyl group
ChEBI
groupe acyle
IUPAC
alkaline earth metals
Erdalkalimetall
Erdalkalimetalle
alkaline earth metal
alkaline-earth metal
alkaline-earth metals
metal alcalino-terreux
metal alcalinoterreo
metales alcalinoterreos
metaux alcalino-terreux
alkaline earth metal atom
alkaline earth metals
IUPAC
Erdalkalimetall
ChEBI
Erdalkalimetalle
ChEBI
alkaline earth metal
ChEBI
alkaline-earth metal
ChEBI
alkaline-earth metals
ChEBI
metal alcalino-terreux
ChEBI
metal alcalinoterreo
ChEBI
metales alcalinoterreos
ChEBI
metaux alcalino-terreux
ChEBI
alkali metals
Alkalimetall
Alkalimetalle
alkali metal
metal alcalin
metal alcalino
metales alcalinos
metaux alcalins
alkali metal atom
alkali metals
IUPAC
Alkalimetall
ChEBI
Alkalimetalle
ChEBI
alkali metal
ChEBI
metal alcalin
ChEBI
metal alcalino
ChEBI
metales alcalinos
ChEBI
metaux alcalins
ChEBI
A monoatomic or polyatomic species having one or more elementary charges of the electron.
Anion
anion
Anionen
aniones
anions
anion
Anion
ChEBI
anion
ChEBI
anion
IUPAC
Anionen
ChEBI
aniones
ChEBI
anions
IUPAC
A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base).
Base
base
Base1
Base2
Basen
Nucleobase
bases
base
Base
ChEBI
base
ChEBI
base
IUPAC
Base1
KEGG_COMPOUND
Base2
KEGG_COMPOUND
Basen
ChEBI
Nucleobase
KEGG_COMPOUND
bases
ChEBI
boron molecular entity
boron compounds
boron molecular entities
boron molecular entity
boron molecular entity
ChEBI
boron compounds
ChEBI
boron molecular entities
ChEBI
calcium
20Ca
Ca
Calcium
Kalzium
calcio
calcium
calcium atom
calcium
IUPAC
20Ca
IUPAC
Ca
IUPAC
Ca
UniProt
Calcium
KEGG_COMPOUND
Kalzium
ChEBI
calcio
ChEBI
calcium
ChEBI
calcium molecular entity
calcium compounds
calcium molecular entities
calcium molecular entity
calcium molecular entity
ChEBI
calcium compounds
ChEBI
calcium molecular entities
ChEBI
The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid.
carbamoyl
-C(O)NH2
-CONH2
aminocarbonyl
carbamyl
carbamyl group
carboxamide
carbamoyl group
carbamoyl
IUPAC
-C(O)NH2
ChEBI
-CONH2
IUPAC
aminocarbonyl
IUPAC
carbamyl
ChEBI
carbamyl group
ChEBI
carboxamide
IUPAC
carbon oxide
Organooxygen compounds that are salts or esters of carbonic acid, H2CO3.
carbonates
carbonyl
carbonyl group
>C=O
carbonyl group
carbonyl
IUPAC
carbonyl group
ChEBI
carbonyl group
UniProt
>C=O
IUPAC
A substance intended to sterilize any organism.
chemosterilants
chemosterilant
chemosterilants
ChEBI
chloride salts
chlorides
chloride salt
chloride salts
ChEBI
chlorides
ChEBI
chlorine
17Cl
Chlor
Cl
chlore
chlorine
chlorum
cloro
chlorine atom
chlorine
IUPAC
17Cl
IUPAC
Chlor
ChEBI
Cl
IUPAC
chlore
ChEBI
chlorine
ChEBI
chlorum
ChEBI
cloro
ChEBI
A halogen molecular entity containing one or more atoms of chlorine.
chlorine molecular entity
An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).
cofactor
cofactors
cofactor
cofactor
IUPAC
cofactors
IUPAC
Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
molecular entity
entidad molecular
entidades moleculares
entite moleculaire
molecular entities
molekulare Entitaet
molecular entity
molecular entity
IUPAC
entidad molecular
IUPAC
entidades moleculares
IUPAC
entite moleculaire
IUPAC
molecular entities
IUPAC
molekulare Entitaet
ChEBI
copper molecular entity
copper compounds
copper molecular entities
copper molecular entity
copper molecular entity
ChEBI
copper compounds
ChEBI
copper molecular entities
ChEBI
copper cation
Cu cation
copper cations
copper cation
copper cation
IUPAC
Cu cation
UniProt
copper cations
ChEBI
A metal sulfate compound having copper(2+) as the metal ion.
Copper(II) sulfate
copper(2+) sulfate
copper(II) sulfate
CuSO4
Cupric sulfate
copper sulfate
cupric sulfate anhydrous
copper(II) sulfate
Copper(II) sulfate
KEGG_COMPOUND
copper(2+) sulfate
IUPAC
copper(II) sulfate
IUPAC
CuSO4
IUPAC
Cupric sulfate
ChemIDplus
copper sulfate
ChemIDplus
cupric sulfate anhydrous
ChemIDplus
Salts and C-organyl derivatives of hydrogen cyanide, HC#N.
cyanides
cyanides
cyanides
IUPAC
A herbicide which when sprayed or dusted on plants causes its leaves to fall off.
Defoliationsmittel
Entlaubungsmittel
defoliants
defoliant
Defoliationsmittel
ChEBI
Entlaubungsmittel
ChEBI
defoliants
ChEBI
An azole that is either one of a pair of heterocyclic organic compounds comprising three carbon atoms and two nitrogen atoms arranged in a ring.
diazoles
diazole
diazoles
ChEBI
Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances.
drugs
medicine
drug
drugs
ChEBI
medicine
ChEBI
monoatomic anions
monoatomic anion
monoatomic anions
ChEBI
monoatomic cations
monoatomic cation
monoatomic cations
ChEBI
A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.
enzyme inhibitor
enzyme inhibitors
inhibidor enzimatico
inhibidores enzimaticos
inhibiteur enzymatique
inhibiteurs enzymatiques
enzyme inhibitor
enzyme inhibitor
IUPAC
enzyme inhibitors
ChEBI
inhibidor enzimatico
ChEBI
inhibidores enzimaticos
ChEBI
inhibiteur enzymatique
ChEBI
inhibiteurs enzymatiques
ChEBI
A substance used to destroy fungal pests.
fungicides
fungicide
fungicides
ChEBI
A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
chemical entity
chemical entity
chemical entity
UniProt
A role played by the molecular entity or part thereof within a biological context.
biological function
biological role
biological function
ChEBI
A defined linked collection of atoms or a single atom within a molecular entity.
group
Gruppe
Rest
groupe
grupo
grupos
group
group
IUPAC
Gruppe
ChEBI
Rest
ChEBI
groupe
IUPAC
grupo
IUPAC
grupos
IUPAC
Any organonitrogen compound containing a carbamimidamido (guanidino) group. Guanidines have the general structure (R(1)R(2)N)(R(3)R(4)N)C=N-R(5) and are related structurally to amidines and ureas.
guanidines
halogen molecular entity
halogen compounds
halogen molecular entities
halogen molecular entity
halogen molecular entity
ChEBI
halogen compounds
ChEBI
halogen molecular entities
ChEBI
halogen
halogens
Halogene
group 17 elements
group VII elements
halogene
halogenes
halogeno
halogenos
halogen
halogen
IUPAC
halogens
IUPAC
Halogene
ChEBI
group 17 elements
ChEBI
group VII elements
ChEBI
halogene
ChEBI
halogenes
ChEBI
halogeno
ChEBI
halogenos
ChEBI
A substance used to destroy plant pests.
Herbizid
Unkrautbekaempfungsmittel
Unkrautvertilgungsmittel
Wildkrautbekaempfungsmittel
herbicides
herbicide
Herbizid
ChEBI
Unkrautbekaempfungsmittel
ChEBI
Unkrautvertilgungsmittel
ChEBI
Wildkrautbekaempfungsmittel
ChEBI
herbicides
ChEBI
A cyclic compound having as ring members atoms of carbon and at least of one other element.
organic heterocycle
organic heterocyclic compounds
organic heterocyclic compound
organic heterocycle
ChEBI
organic heterocyclic compounds
ChEBI
hydrocarbon
Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
hydroxides
A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
oxoacid
oxoacids
oxacids
oxiacids
oxo acid
oxy-acids
oxyacids
oxoacid
oxoacid
IUPAC
oxoacids
IUPAC
oxacids
ChEBI
oxiacids
ChEBI
oxo acid
ChEBI
oxy-acids
ChEBI
oxyacids
ChEBI
inorganic anions
inorganic anion
inorganic anions
ChEBI
A molecular entity that contains no carbon.
anorganische Verbindungen
inorganic compounds
inorganic entity
inorganic molecular entities
inorganics
inorganic molecular entity
anorganische Verbindungen
ChEBI
inorganic compounds
ChEBI
inorganic entity
ChEBI
inorganic molecular entities
ChEBI
inorganics
ChEBI
inorganic oxides
inorganic oxide
inorganic oxides
ChEBI
Any phosphate that contains no carbon atom.
inorganic phosphates
inorganic phosphate
inorganic phosphates
ChEBI
anorganisches Salz
inorganic salts
inorganic salt
anorganisches Salz
ChEBI
inorganic salts
ChEBI
inorganic sulfate salts
inorganic sulfates
inorganic sulfate salt
inorganic sulfate salts
ChEBI
inorganic sulfates
ChEBI
Strictly, a substance intended to kill members of the class Insecta. In common usage, any substance used for preventing, destroying, repelling or controlling insects.
insecticides
insecticide
insecticides
ChEBI
A salt is an assembly of cations and anions.
salt
Salz
Salze
ionic compound
ionic compounds
sal
sales
salts
sel
sels
salt
salt
IUPAC
Salz
ChEBI
Salze
ChEBI
ionic compound
ChEBI
ionic compounds
ChEBI
sal
ChEBI
sales
ChEBI
salts
ChEBI
sel
ChEBI
sels
ChEBI
monoatomic ions
monoatomic ion
monoatomic ions
ChEBI
organic salts
organisches Salz
organic salt
organic salts
ChEBI
organisches Salz
ChEBI
A molecular entity having a net electric charge.
Ion
ion
Ionen
iones
ions
ion
Ion
ChEBI
ion
ChEBI
ion
IUPAC
Ionen
ChEBI
iones
ChEBI
ions
ChEBI
magnesium
12Mg
Magnesium
Mg
magnesio
magnesium
magnesium atom
magnesium
IUPAC
12Mg
IUPAC
Magnesium
ChEBI
Mg
IUPAC
Mg
UniProt
magnesio
ChEBI
magnesium
ChEBI
magnesium molecular entity
magnesium compounds
magnesium molecular entities
magnesium molecular entity
magnesium molecular entity
ChEBI
magnesium compounds
ChEBI
magnesium molecular entities
ChEBI
magnesium porphyrins
magnesium porphyrin
magnesium porphyrins
ChEBI
Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
metabolite
metabolites
primary metabolites
secondary metabolites
metabolite
metabolite
IUPAC
metabolites
ChEBI
primary metabolites
ChEBI
secondary metabolites
ChEBI
a metal cation
metal cations
metal cation
a metal cation
UniProt
metal cations
ChEBI
metalloporphyrins
metaloporphyrins
metalloporphyrin
metalloporphyrins
ChEBI
metaloporphyrins
ChEBI
mitochondrial electron transport chain inhibitors
mitochondrial electron-transport chain inhibitor
mitochondrial respiratory chain inhibitors
mitochondrial respiratory-chain inhibitor
mitochondrial electron transport chain inhibitors
ChEBI
mitochondrial electron-transport chain inhibitor
ChEBI
mitochondrial respiratory chain inhibitors
ChEBI
A molecule all atoms of which have the same atomic number.
homoatomic molecule
homoatomic molecules
elemental molecule
homoatomic molecule
ChEBI
homoatomic molecules
ChEBI
Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.
molecule
Molekuel
molecula
molecules
neutral molecular compounds
molecule
molecule
IUPAC
Molekuel
ChEBI
molecula
IUPAC
molecules
IUPAC
neutral molecular compounds
IUPAC
monoatomic monocations
monovalent inorganic cations
monoatomic monocation
monoatomic monocations
ChEBI
monovalent inorganic cations
ChEBI
A substance used to destroy pests of the phylum Nematoda (roundworms).
nematicides
nematocide
nematocides
nematicide
nematicides
ChEBI
nematocide
ChEBI
nematocides
ChEBI
nitrogen
7N
N
Stickstoff
azote
nitrogen
nitrogeno
nitrogen atom
nitrogen
IUPAC
7N
IUPAC
N
IUPAC
Stickstoff
ChEBI
azote
IUPAC
nitrogen
ChEBI
nitrogeno
ChEBI
nonmetal
Nichtmetall
Nichtmetalle
no metal
no metales
non-metal
non-metaux
nonmetal
nonmetals
nonmetal atom
nonmetal
IUPAC
Nichtmetall
ChEBI
Nichtmetalle
ChEBI
no metal
ChEBI
no metales
ChEBI
non-metal
ChEBI
non-metaux
ChEBI
nonmetal
ChEBI
nonmetals
ChEBI
Any organic ion with a net negative charge.
organic anions
organic anion
organic anions
ChEBI
organic ions
organic ion
organic ions
ChEBI
organic oxide
An oxide is a chemical compound of oxygen with other chemical elements.
oxide
oxides
oxide
oxide
ChEBI
oxides
ChEBI
oxygen
8O
O
Sauerstoff
oxigeno
oxygen
oxygene
oxygen atom
oxygen
IUPAC
8O
IUPAC
O
IUPAC
Sauerstoff
ChEBI
oxigeno
ChEBI
oxygen
ChEBI
oxygene
ChEBI
oxygen molecular entity
oxygen molecular entities
oxygen molecular entity
oxygen molecular entity
ChEBI
oxygen molecular entities
ChEBI
Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests.
pesticide
Pestizid
Pestizide
pesticides
pesticide
pesticide
IUPAC
Pestizid
ChEBI
Pestizide
ChEBI
pesticides
ChEBI
Any organic aromatic compound with a structure based on a phenylpropane skeleton. The class includes naturally occurring phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules as well as their semi-synthetic and synthetic analogues. Phenylpropanoids are also precursors of lignin.
phenylpropanoids
phenylpropanoid
phenylpropanoids
ChEBI
Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom.
phosphates
phosphates
phosphate
phosphates
IUPAC
phosphates
ChEBI
A phosphorus oxoacid that consists of one oxo and three hydroxy groups joined covalently to a central phosphorus atom.
Phosphoric acid
phosphoric acid
tetraoxophosphoric acid
trihydrogen tetraoxophosphate(3-)
trihydroxidooxidophosphorus
H3PO4
Orthophosphoric acid
Phosphate
Phosphorsaeure
Phosphorsaeureloesungen
[PO(OH)3]
acide phosphorique
acidum phosphoricum
orthophosphoric acid
phosphoric acid
Phosphoric acid
KEGG_COMPOUND
phosphoric acid
IUPAC
tetraoxophosphoric acid
IUPAC
trihydrogen tetraoxophosphate(3-)
IUPAC
trihydroxidooxidophosphorus
IUPAC
H3PO4
IUPAC
Orthophosphoric acid
KEGG_COMPOUND
Phosphate
KEGG_COMPOUND
Phosphorsaeure
ChEBI
Phosphorsaeureloesungen
ChEBI
[PO(OH)3]
IUPAC
acide phosphorique
ChEBI
acidum phosphoricum
ChEBI
orthophosphoric acid
NIST_Chemistry_WebBook
phosphoric acid derivative
phosphorus molecular entities
phosphorus molecular entity
phosphorus molecular entities
ChEBI
An endogenous molecular entity that results in a colour of an organism as the consequence of the selective absorption of light.
pigments
biological pigment
pigments
ChEBI
polyphenylpropanoid
Natural pigments containing a fundamental skeleton of four pyrrole nuclei united through the alpha-positions by four methine groups to form a macrocyclic structure.
porphyrins
porphyrins
porphyrins
IUPAC
potassium
19K
K
Kalium
kalium
potasio
potassium
potassium atom
potassium
IUPAC
19K
IUPAC
K
IUPAC
Kalium
ChemIDplus
kalium
IUPAC
potasio
ChEBI
potassium
ChEBI
potassium molecular entity
potassium molecular entities
potassium molecular entity
potassium molecular entity
ChEBI
potassium molecular entities
ChEBI
Any alkali metal salt having potassium(1+) as the cation.
Kaliumsalz
Kaliumsalze
potassium salts
potassium salt
Kaliumsalz
ChEBI
Kaliumsalze
ChEBI
potassium salts
ChEBI
pyrazoles
selenium molecular entity
selenium molecular entities
selenium molecular entity
selenium molecular entity
ChEBI
selenium molecular entities
ChEBI
silicon molecular entity
sodium
11Na
Na
Natrium
natrium
sodio
sodium
sodium atom
sodium
IUPAC
11Na
IUPAC
Na
IUPAC
Natrium
ChemIDplus
natrium
IUPAC
sodio
ChemIDplus
sodium
ChEBI
sodium chloride
sodium compounds
sodium molecular entities
sodium molecular entity
sodium compounds
ChEBI
sodium molecular entities
ChEBI
Any alkali metal salt having sodium(1+) as the cation.
Natriumsalz
Natriumsalze
sodium salts
sodium salt
Natriumsalz
ChEBI
Natriumsalze
ChEBI
sodium salts
ChEBI
Salts and esters of sulfuric acid
sulfates
sulfuric acid derivative
sulphates
sulfates
sulfates
ChEBI
sulfuric acid derivative
ChEBI
sulphates
ChEBI
sulfonium compound
sulfur
16S
Elemental sulfur
S
Schwefel
azufre
soufre
sulfur
sulphur
theion
sulfur atom
sulfur
IUPAC
16S
IUPAC
Elemental sulfur
KEGG_COMPOUND
S
IUPAC
S
KEGG_COMPOUND
Schwefel
ChEBI
azufre
ChEBI
soufre
ChEBI
sulfur
ChEBI
sulfur
UniProt
sulphur
ChEBI
theion
IUPAC
sulfur molecular entity
sulfur molecular entities
sulfur molecular entity
sulfur molecular entity
ChEBI
sulfur molecular entities
ChEBI
A sulfur oxoacid that consists of two oxo and two hydroxy groups joined covalently to a central sulfur atom.
Sulfuric acid
dihydrogen tetraoxosulfate
dihydroxidodioxidosulfur
hydrogen tetraoxosulfate(2-)
hydrogen tetraoxosulfate(VI)
sulfuric acid
tetraoxosulfuric acid
Acide sulfurique
Acido sulfurico
Acidum sulfuricum
H2SO4
Schwefelsaeureloesungen
[S(OH)2O2]
[SO2(OH)2]
sulphuric acid
sulfuric acid
Sulfuric acid
KEGG_COMPOUND
dihydrogen tetraoxosulfate
IUPAC
dihydroxidodioxidosulfur
IUPAC
hydrogen tetraoxosulfate(2-)
IUPAC
hydrogen tetraoxosulfate(VI)
IUPAC
sulfuric acid
ChEBI
sulfuric acid
IUPAC
tetraoxosulfuric acid
IUPAC
Acide sulfurique
ChemIDplus
Acido sulfurico
ChemIDplus
Acidum sulfuricum
ChemIDplus
H2SO4
IUPAC
Schwefelsaeureloesungen
ChemIDplus
[S(OH)2O2]
MolBase
[SO2(OH)2]
IUPAC
sulphuric acid
MolBase
A natural pigment containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
tetrapyrrole
tetrapyrroles
a tetrapyrrole
tetrapyrrole
tetrapyrrole
IUPAC
tetrapyrroles
IUPAC
a tetrapyrrole
UniProt
Poisonous substance produced by a biological organism such as a microbe, animal or plant.
toxin
toxins
toxin
toxin
IUPAC
toxins
ChEBI
Any nutrient required in small quantities by organisms throughout their life in order to orchestrate a range of physiological functions.
micronutrients
trace elements
micronutrient
micronutrients
ChEBI
trace elements
ChEBI
An element whose atom has an incomplete d sub-shell, or which can give rise to cations with an incomplete d sub-shell.
transition element
Uebergangselement
Uebergangsmetalle
metal de transicion
metal de transition
metales de transicion
metaux de transition
transition element
transition elements
transition metal
transition metals
transition element atom
transition element
IUPAC
Uebergangselement
ChEBI
Uebergangsmetalle
ChEBI
metal de transicion
ChEBI
metal de transition
ChEBI
metales de transicion
ChEBI
metaux de transition
ChEBI
transition element
ChEBI
transition elements
ChEBI
transition metal
ChEBI
transition metals
ChEBI
A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid.
univalent acyl group
univalent carboacyl groups
univalent carboxylic acyl groups
univalent carboacyl group
univalent acyl group
ChEBI
univalent carboacyl groups
ChEBI
univalent carboxylic acyl groups
ChEBI
zinc
30Zn
Zink
Zn
Zn(II)
Zn2+
cinc
zinc
zincum
zinc atom
zinc
IUPAC
30Zn
IUPAC
Zink
ChEBI
Zn
IUPAC
Zn(II)
KEGG_COMPOUND
Zn2+
KEGG_COMPOUND
cinc
ChEBI
zinc
ChEBI
zincum
ChEBI
zinc compounds
zinc molecular entities
zinc molecular entity
zinc compounds
ChEBI
zinc molecular entities
ChEBI
zinc ion
zinc ions
zinc ion
zinc ion
ChEBI
zinc ions
ChEBI
boron
5B
B
Bor
Boron
boracium
bore
boro
boron
boron atom
boron
IUPAC
5B
IUPAC
B
KEGG_COMPOUND
Bor
ChEBI
Boron
KEGG_COMPOUND
boracium
ChEBI
bore
ChEBI
boro
ChEBI
boron
ChEBI
selenium
34Se
Se
Selen
Selenium
selenio
selenium
selenium atom
selenium
IUPAC
34Se
IUPAC
Se
IUPAC
Selen
ChemIDplus
Selenium
KEGG_COMPOUND
selenio
ChEBI
selenium
ChEBI
carbon
6C
C
Carbon
Kohlenstoff
carbon
carbone
carbonium
carbono
carbon atom
carbon
IUPAC
6C
IUPAC
C
IUPAC
C
KEGG_COMPOUND
Carbon
KEGG_COMPOUND
Kohlenstoff
ChEBI
carbon
ChEBI
carbone
ChEBI
carbonium
ChEBI
carbono
ChEBI
Chemical element (nickel group element atom) with atomic number 28.
nickel
28Ni
Ni
Nickel
Raney alloy
niccolum
nickel
niquel
nickel atom
nickel
IUPAC
28Ni
IUPAC
Ni
IUPAC
Ni
UniProt
Nickel
ChEBI
Raney alloy
ChemIDplus
niccolum
ChEBI
nickel
ChEBI
niquel
ChEBI
A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised.
CARBAMIC ACID
Carbamic acid
carbamic acid
Aminoameisensaeure
Aminoformic acid
Carbamate
Carbamidsaeure
carbamic acid
CARBAMIC ACID
PDBeChem
Carbamic acid
KEGG_COMPOUND
carbamic acid
IUPAC
Aminoameisensaeure
ChEBI
Aminoformic acid
KEGG_COMPOUND
Carbamate
KEGG_COMPOUND
Carbamidsaeure
ChEBI
phosphorus
15P
P
Phosphor
Phosphorus
fosforo
phosphore
phosphorus
phosphorus atom
phosphorus
IUPAC
15P
IUPAC
P
IUPAC
P
KEGG_COMPOUND
Phosphor
ChEBI
Phosphorus
KEGG_COMPOUND
fosforo
ChEBI
phosphore
ChEBI
phosphorus
ChEBI
molybdenum
42Mo
Mo
Molybdaen
Molybdenum
molibdeno
molybdene
molybdenum
molybdenum atom
molybdenum
IUPAC
42Mo
IUPAC
Mo
IUPAC
Mo
UniProt
Molybdaen
ChEBI
Molybdenum
KEGG_COMPOUND
molibdeno
ChEBI
molybdene
ChEBI
molybdenum
ChEBI
copper
29Cu
Copper
Cu
Kupfer
cobre
copper
cuivre
cuprum
copper atom
copper
IUPAC
29Cu
IUPAC
Copper
KEGG_COMPOUND
Cu
ChEBI
Cu
IUPAC
Kupfer
ChEBI
cobre
ChEBI
copper
ChEBI
cuivre
ChEBI
cuprum
IUPAC
An onium cation obtained by protonation of ammonia.
ammonium
azanium
Ammonium(1+)
NH4(+)
NH4+
[NH4](+)
ammonium cation
ammonium ion
ammonium
ammonium
ChEBI
ammonium
IUPAC
azanium
IUPAC
Ammonium(1+)
ChemIDplus
NH4(+)
IUPAC
NH4(+)
UniProt
NH4+
KEGG_COMPOUND
[NH4](+)
MolBase
ammonium cation
ChemIDplus
ammonium ion
PDBeChem
A family of magnesium porphyrins, defined by the presence of a fifth ring beyond the four pyrrole-like rings. The rings can have various side chains which usually include a long phytol chain.
Chlorophyll
chlorophyll
chlorophylls
chlorophyll
Chlorophyll
KEGG_COMPOUND
chlorophyll
JCBN
chlorophylls
IUPAC
Carbonic acid
carbonic acid
dihydroxidooxidocarbon
Dihydrogen carbonate
H2CO3
Koehlensaeure
[CO(OH)2]
carbonic acid
Carbonic acid
KEGG_COMPOUND
carbonic acid
IUPAC
dihydroxidooxidocarbon
IUPAC
Dihydrogen carbonate
KEGG_COMPOUND
H2CO3
IUPAC
H2CO3
KEGG_COMPOUND
Koehlensaeure
ChEBI
[CO(OH)2]
IUPAC
An ion of copper carrying a double positive charge.
copper(2+)
copper(2+) ion
copper(II) cation
COPPER (II) ION
Cu(2+)
Cu(II)
Cu2+
copper(II) cation
copper, ion (Cu2+)
cupric ion
copper(2+)
copper(2+)
IUPAC
copper(2+) ion
IUPAC
copper(II) cation
IUPAC
COPPER (II) ION
PDBeChem
Cu(2+)
UniProt
Cu(II)
ChEBI
Cu2+
ChEBI
copper(II) cation
ChEBI
copper, ion (Cu2+)
ChemIDplus
cupric ion
ChEBI
The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated.
a carboxylate
carboxylic acid anions
carboxylic anions
carboxylic acid anion
a carboxylate
UniProt
carboxylic acid anions
ChEBI
carboxylic anions
ChEBI
A monoatomic monocation obtained from sodium.
sodium cation
sodium(1+)
sodium(1+) ion
sodium(I) cation
Na(+)
Na+
SODIUM ION
sodium(1+)
sodium cation
IUPAC
sodium(1+)
IUPAC
sodium(1+) ion
IUPAC
sodium(I) cation
IUPAC
Na(+)
IUPAC
Na(+)
UniProt
Na+
KEGG_COMPOUND
SODIUM ION
PDBeChem
A monoatomic monocation obtained from potassium.
potassium cation
potassium(1+)
potassium(1+) ion
potassium(I) cation
K(+)
K+
POTASSIUM ION
potassium(1+)
potassium cation
IUPAC
potassium(1+)
IUPAC
potassium(1+) ion
IUPAC
potassium(I) cation
IUPAC
K(+)
IUPAC
K(+)
UniProt
K+
KEGG_COMPOUND
POTASSIUM ION
PDBeChem
zinc(2+)
zinc(2+) ion
zinc(II) cation
ZINC ION
Zn(2+)
Zn(II)
Zn2+
dietary zinc
zinc cation
zinc, ion (Zn2+)
zinc(2+)
zinc(2+)
IUPAC
zinc(2+) ion
IUPAC
zinc(II) cation
IUPAC
ZINC ION
PDBeChem
Zn(2+)
IUPAC
Zn(2+)
UniProt
Zn(II)
KEGG_COMPOUND
Zn2+
KEGG_COMPOUND
dietary zinc
ChEBI
zinc cation
IUPAC
zinc, ion (Zn2+)
ChemIDplus
calcium(2+)
calcium(2+) ion
calcium(II) cation
CALCIUM ION
Ca(2+)
Ca2+
calcium, doubly charged positive ion
calcium(2+)
calcium(2+)
IUPAC
calcium(2+) ion
IUPAC
calcium(II) cation
IUPAC
CALCIUM ION
PDBeChem
Ca(2+)
IUPAC
Ca(2+)
UniProt
Ca2+
KEGG_COMPOUND
calcium, doubly charged positive ion
NIST_Chemistry_WebBook
dichlorine
Cl2
chlorine
molecular chlorine
dichlorine
dichlorine
IUPAC
Cl2
IUPAC
chlorine
ChemIDplus
molecular chlorine
NIST_Chemistry_WebBook
amide
azanide
dihydridonitrate(1-)
NH2(-)
azanide
amide
IUPAC
azanide
IUPAC
dihydridonitrate(1-)
IUPAC
NH2(-)
IUPAC
A divalent inorganic anion resulting from the removal of two protons from ammonia.
azanediide
hydridonitrate(2-)
NH(2-)
imide
hydridonitrate(2-)
azanediide
IUPAC
hydridonitrate(2-)
IUPAC
NH(2-)
IUPAC
imide
IUPAC
A carboxamide derived from a monocarboxylic acid.
monocarboxylic acid amides
monocarboxylic acid amide
monocarboxylic acid amides
ChEBI
nitrogen(1+)
N(+)
Nitrogen cation
nitrogen(1+)
nitrogen(1+)
IUPAC
N(+)
IUPAC
Nitrogen cation
NIST_Chemistry_WebBook
aquahydrogen(1+)
oxidanium
oxonium
trihydridooxygen(1+)
H3O(+)
Hydronium cation
Hydronium ion
[OH3](+)
oxonium
aquahydrogen(1+)
IUPAC
oxidanium
IUPAC
oxonium
IUPAC
trihydridooxygen(1+)
IUPAC
H3O(+)
IUPAC
Hydronium cation
NIST_Chemistry_WebBook
Hydronium ion
ChemIDplus
[OH3](+)
MolBase
hydrogen(sulfide)(1-)
hydrosulfide
sulfanide
HS anion
HS(-)
hydrogen sulfide
hydrosulfide
hydrogen(sulfide)(1-)
IUPAC
hydrosulfide
IUPAC
sulfanide
IUPAC
HS anion
NIST_Chemistry_WebBook
HS(-)
IUPAC
hydrogen sulfide
UniProt
diazynediium
HNNH(2+)
[HNNH](2+)
diazynediium
diazynediium
IUPAC
HNNH(2+)
IUPAC
[HNNH](2+)
ChEBI
diazynium
HN2+
N#NH(+)
diazynium
diazynium
IUPAC
HN2+
NIST_Chemistry_WebBook
N#NH(+)
IUPAC
Divalent cation
divalent inorganic cations
monoatomic dications
monoatomic dication
Divalent cation
KEGG_COMPOUND
divalent inorganic cations
ChEBI
monoatomic dications
ChEBI
sulfanium
sulfonium
trihydridosulfur(1+)
H3S(+)
H3S+
[SH3](+)
sulphonium
sulfonium
sulfanium
IUPAC
sulfonium
IUPAC
trihydridosulfur(1+)
IUPAC
H3S(+)
IUPAC
H3S+
NIST_Chemistry_WebBook
[SH3](+)
ChEBI
sulphonium
ChEBI
silicon dioxide
trioxidophosphate(1-)
PO3(-)
[PO3](-)
trioxidophosphate(1-)
trioxidophosphate(1-)
IUPAC
PO3(-)
IUPAC
[PO3](-)
ChEBI
calcium dihydroxide
calcium(2+) hydroxide
calcium(II) hydroxide
Ca(OH)2
Calcium hydroxide
Kalziumhydroxid
Loeschkalk
calcium hydrate
geloeschter Kalk
hydralime
hydrated lime
slaked lime
calcium dihydroxide
calcium dihydroxide
IUPAC
calcium(2+) hydroxide
IUPAC
calcium(II) hydroxide
IUPAC
Ca(OH)2
IUPAC
Calcium hydroxide
KEGG_COMPOUND
Kalziumhydroxid
ChEBI
Loeschkalk
ChEBI
calcium hydrate
NIST_Chemistry_WebBook
geloeschter Kalk
ChEBI
hydralime
ChemIDplus
hydrated lime
NIST_Chemistry_WebBook
slaked lime
NIST_Chemistry_WebBook
A member of the class of calcium oxides of calcium and oxygen in a 1:1 ratio.
Calcium oxide
calcium oxide
Aetzkalk
Branntkalk
Kalziumoxid
Lime
burnt lime
calcium monoxide
calx
caustic lime
gebrannter Kalk
limestone
quicklime
calcium oxide
Calcium oxide
KEGG_COMPOUND
calcium oxide
IUPAC
Aetzkalk
ChEBI
Branntkalk
ChEBI
Kalziumoxid
ChEBI
Lime
KEGG_COMPOUND
burnt lime
ChemIDplus
calcium monoxide
NIST_Chemistry_WebBook
calx
NIST_Chemistry_WebBook
caustic lime
NIST_Chemistry_WebBook
gebrannter Kalk
ChEBI
limestone
ChEBI
quicklime
NIST_Chemistry_WebBook
Calcium sulfate
calcium sulfate
CaSO4
Kalziumsulfat
anhydrous gypsum
calcium sulfate, anhydrous
calcium sulphate
calcium sulfate
Calcium sulfate
KEGG_COMPOUND
calcium sulfate
IUPAC
CaSO4
IUPAC
Kalziumsulfat
ChEBI
anhydrous gypsum
NIST_Chemistry_WebBook
calcium sulfate, anhydrous
NIST_Chemistry_WebBook
calcium sulphate
ChEBI
A magnesium salt with formula CMgO3. Its hydrated forms, particularly the di-, tri-, and tetrahydrates occur as minerals.
Magnesium carbonate
magnesium carbonate
Magnesium carbonate anhydrous
Magnesiumkarbonat
MgCO3
magnesium carbonate
Magnesium carbonate
KEGG_COMPOUND
magnesium carbonate
IUPAC
Magnesium carbonate anhydrous
KEGG_COMPOUND
Magnesiumkarbonat
ChEBI
MgCO3
IUPAC
Magnesium oxide
MgO
magnesia
magnesia usta
magnesium monoxide
magnesium oxide
Magnesium oxide
KEGG_COMPOUND
MgO
IUPAC
magnesia
NIST_Chemistry_WebBook
magnesia usta
NIST_Chemistry_WebBook
magnesium monoxide
NIST_Chemistry_WebBook
Potassium sulfate
potassium sulfate
K2SO4
Kaliumsulfat
dipotassium sulfate
potassium sulphate
potassium sulfate
Potassium sulfate
KEGG_COMPOUND
potassium sulfate
IUPAC
K2SO4
IUPAC
Kaliumsulfat
ChEBI
dipotassium sulfate
ChemIDplus
potassium sulphate
ChEBI
A (13)C-modified compound that is urea in which the carbon is present as its (13)C isotope.
((13)C)urea
Helicosol
Urea (13C)
Urea C13
((13)C)urea
((13)C)urea
IUPAC
Helicosol
KEGG_DRUG
Urea (13C)
KEGG_DRUG
Urea C13
KEGG_DRUG
calcium sulfate dihydrate
calcium sulfate--water (1/2)
CaSO4.2H2O
calcium(II) sulfate, dihydrate (1:1:2)
sulfuric acid, calcium salt (1:1), dihydrate
sulfuric acid, calcium(2+) salt, dihydrate
calcium sulfate dihydrate
calcium sulfate dihydrate
IUPAC
calcium sulfate--water (1/2)
IUPAC
CaSO4.2H2O
IUPAC
calcium(II) sulfate, dihydrate (1:1:2)
ChemIDplus
sulfuric acid, calcium salt (1:1), dihydrate
ChemIDplus
sulfuric acid, calcium(2+) salt, dihydrate
ChemIDplus
A metal chloride salt with a K(+) counterion.
potassium chloride
KCl
Kaliumchlorid
Kaon-Cl 10
Klor-con
Klotrix
Monopotassium chloride
[KCl]
muriate of potash
sylvite
potassium chloride
potassium chloride
IUPAC
KCl
IUPAC
Kaliumchlorid
ChEBI
Kaon-Cl 10
KEGG_DRUG
Klor-con
KEGG_DRUG
Klotrix
KEGG_DRUG
Monopotassium chloride
DrugBank
[KCl]
MolBase
muriate of potash
NIST_Chemistry_WebBook
sylvite
ChEBI
A magnesium salt having sulfate as the counterion.
magnesium sulfate
Magnesium sulfate (1:1)
Magnesiumsulfat
MgSO4
magnesium sulfate anhydrous
magnesium sulphate
magnesium(II) sulfate
sulfuric acid magnesium salt
sulphate of magnesia
magnesium sulfate
magnesium sulfate
IUPAC
Magnesium sulfate (1:1)
ChemIDplus
Magnesiumsulfat
ChEBI
MgSO4
IUPAC
magnesium sulfate anhydrous
ChemIDplus
magnesium sulphate
NIST_Chemistry_WebBook
magnesium(II) sulfate
NIST_Chemistry_WebBook
sulfuric acid magnesium salt
NIST_Chemistry_WebBook
sulphate of magnesia
ChEBI
An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
Amide
amides
amide
Amide
KEGG_COMPOUND
amides
IUPAC
A calcium salt with formula CCaO3.
Calcium carbonate
calcium carbonate
calcium trioxidocarbonate
CaCO3
Calciumcarbonat
E 170
Kalziumkarbonat
Precipitated calcium carbonate
calcium carbonate (1:1)
carbonate de calcium
carbonato de calcio
carbonic acid calcium salt (1:1)
kohlensaurer Kalk
calcium carbonate
Calcium carbonate
KEGG_COMPOUND
calcium carbonate
IUPAC
calcium trioxidocarbonate
IUPAC
CaCO3
IUPAC
Calciumcarbonat
ChEBI
E 170
ChEBI
Kalziumkarbonat
ChEBI
Precipitated calcium carbonate
KEGG_COMPOUND
calcium carbonate (1:1)
ChemIDplus
carbonate de calcium
ChEBI
carbonato de calcio
ChEBI
carbonic acid calcium salt (1:1)
ChemIDplus
kohlensaurer Kalk
ChEBI
calcium chloride
calcium dichloride
CaCl2
Calcium chloride anhydrous
[CaCl2]
calcium chloride anhydrous
calcium dichloride
calcium chloride
IUPAC
calcium dichloride
IUPAC
CaCl2
IUPAC
Calcium chloride anhydrous
KEGG_COMPOUND
[CaCl2]
MolBase
calcium chloride anhydrous
ChemIDplus
Intended use of the molecular entity or part thereof by humans.
application
A particle not known to have substructure.
elementary particle
elementary particles
fundamental particle
elementary particle
IUPAC
elementary particles
ChEBI
A monoatomic entity is a molecular entity consisting of a single atom.
atomic entity
monoatomic entities
monoatomic entity
atomic entity
ChEBI
monoatomic entities
ChEBI
An assembly consisting of a central atom (usually metallic) to which is attached a surrounding array of other groups of atoms (ligands).
coordination entities
coordination entity
coordination compounds
coordination entity
coordination entities
IUPAC
coordination entity
IUPAC
coordination compounds
ChEBI
oxoacid derivatives
oxoacid derivative
oxoacid derivatives
ChEBI
inorganic hydrides
inorganic hydride
inorganic hydrides
ChEBI
organic fundamental parent
Any substituent group which does not contain carbon.
inorganic groups
inorganic group
inorganic groups
ChEBI
Any substituent group or skeleton containing carbon.
organic groups
organic group
organic groups
ChEBI
Any organic substituent group, regardless of functional type, having one free valence at a carbon atom.
organyl group
organyl groups
groupe organyle
grupo organilo
grupos organilo
organyl group
organyl group
IUPAC
organyl groups
IUPAC
groupe organyle
IUPAC
grupo organilo
IUPAC
grupos organilo
IUPAC
A chemical entity constituting the smallest component of an element having the chemical properties of the element.
atom
atome
atomo
atoms
atomus
element
elements
atom
atom
IUPAC
atome
IUPAC
atomo
IUPAC
atoms
ChEBI
atomus
ChEBI
element
ChEBI
elements
ChEBI
A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.
nucleus
Atomkern
Kern
noyau
noyau atomique
nuclei
nucleo
nucleo atomico
nucleus atomi
atomic nucleus
nucleus
IUPAC
Atomkern
ChEBI
Kern
ChEBI
noyau
IUPAC
noyau atomique
ChEBI
nuclei
ChEBI
nucleo
IUPAC
nucleo atomico
ChEBI
nucleus atomi
ChEBI
Heavy nuclear particle: proton or neutron.
nucleon
Nukleon
Nukleonen
nucleons
nucleon
nucleon
IUPAC
nucleon
IUPAC
Nukleon
ChEBI
Nukleonen
ChEBI
nucleons
ChEBI
A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
primary amide
primary amides
primary amide
primary amide
IUPAC
primary amides
IUPAC
A molecular entity all atoms of which have the same atomic number.
homoatomic entity
homoatomic molecular entities
homoatomic molecular entity
elemental molecular entity
homoatomic entity
ChEBI
homoatomic molecular entities
ChEBI
homoatomic molecular entity
ChEBI
elemental hydrogen
elemental oxygen
diatomic oxygen
diatomic nitrogen
elemental nitrogen
monoatomic nitrogen
An anion consisting of more than one atom.
polyatomic anions
polyatomic anion
polyatomic anions
ChEBI
chemical messenger
molecular messenger
chemical messenger
ChEBI
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
Antibiotika
Antibiotikum
antibiotic
antibiotics
antibiotique
antimicrobial
antimicrobial agents
antimicrobials
microbicide
microbicides
antimicrobial agent
Antibiotika
ChEBI
Antibiotikum
ChEBI
antibiotic
ChEBI
antibiotics
ChEBI
antibiotique
IUPAC
antimicrobial
ChEBI
antimicrobial agents
ChEBI
antimicrobials
ChEBI
microbicide
ChEBI
microbicides
ChEBI
A nutrient is a food component that an organism uses to survive and grow.
nutrients
nutrient
nutrients
ChEBI
A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
heteroorganic entities
organoelement compounds
heteroorganic entity
heteroorganic entities
ChEBI
organoelement compounds
ChEBI
An agrochemical is a substance that is used in agriculture or horticulture.
agrichemical
agrichemicals
agricultural chemicals
agrochemicals
agrochemical
agrichemical
ChEBI
agrichemicals
ChEBI
agricultural chemicals
ChEBI
agrochemicals
ChEBI
A fertilizer is any substance that is added to soil or water to assist the growth of plants.
fertiliser
fertilizers
fertilizer
fertiliser
ChEBI
fertilizers
ChEBI
A substance used to destroy rodent pests.
rodenticides
rodenticide
rodenticides
ChEBI
A physiological role played by any substance of either plant, animal or artificial origin which contains essential body nutrients that can be ingested by an organism to provide energy, promote growth, and maintain the processes of life.
food
fuel
A molecular entity containing one or more atoms of an alkali metal.
alkali metal molecular entities
alkali metal molecular entity
alkali metal molecular entities
ChEBI
An alkaline earth molecular entity is a molecular entity containing one or more atoms of an alkaline earth metal.
alkaline earth molecular entity
alkaline earth compounds
alkaline earth molecular entities
alkaline-earth compounds
alkaline earth molecular entity
alkaline earth molecular entity
ChEBI
alkaline earth compounds
ChEBI
alkaline earth molecular entities
ChEBI
alkaline-earth compounds
ChEBI
Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.
pnictogens
group 15 elements
group V elements
nitrogenoideos
nitrogenoides
pnictogene
pnictogenes
pnictogen
pnictogens
IUPAC
group 15 elements
ChEBI
group V elements
ChEBI
nitrogenoideos
ChEBI
nitrogenoides
ChEBI
pnictogene
ChEBI
pnictogenes
ChEBI
A p-block molecular entity containing any pnictogen.
pnictogen molecular entity
pnictogen molecular entities
pnictogen molecular entity
pnictogen molecular entity
ChEBI
pnictogen molecular entities
ChEBI
Any p-block element belonging to the group 16 family of the periodic table.
chalcogen
chalcogens
Chalkogen
Chalkogene
anfigeno
anfigenos
calcogeno
calcogenos
chalcogene
chalcogenes
group 16 elements
group VI elements
chalcogen
chalcogen
IUPAC
chalcogens
IUPAC
Chalkogen
ChEBI
Chalkogene
ChEBI
anfigeno
ChEBI
anfigenos
ChEBI
calcogeno
ChEBI
calcogenos
ChEBI
chalcogene
ChEBI
chalcogenes
ChEBI
group 16 elements
ChEBI
group VI elements
ChEBI
Any p-block molecular entity containing a chalcogen.
chalcogen molecular entity
chalcogen compounds
chalcogen molecular entities
chalcogen molecular entity
chalcogen molecular entity
ChEBI
chalcogen compounds
ChEBI
chalcogen molecular entities
ChEBI
group 14 elements
carbon group element
carbon group elements
carbonoides
cristallogene
cristallogenes
group IV elements
carbon group element atom
group 14 elements
IUPAC
carbon group element
ChEBI
carbon group elements
ChEBI
carbonoides
ChEBI
cristallogene
ChEBI
cristallogenes
ChEBI
group IV elements
ChEBI
group 13 elements
Element der Borgruppe
boron group element
boron group elements
group III elements
boron group element atom
group 13 elements
IUPAC
Element der Borgruppe
ChEBI
boron group element
ChEBI
boron group elements
ChEBI
group III elements
ChEBI
An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
main group elements
Hauptgruppenelement
Hauptgruppenelemente
main group element
main group element atom
main group elements
IUPAC
Hauptgruppenelement
ChEBI
Hauptgruppenelemente
ChEBI
main group element
ChEBI
silicon oxide
group 12 elements
zinc group element
zinc group elements
zinc group element atom
group 12 elements
IUPAC
zinc group element
ChEBI
zinc group elements
ChEBI
group 6 elements
chromium group element
chromium group elements
chromium group element atom
group 6 elements
IUPAC
chromium group element
ChEBI
chromium group elements
ChEBI
group 7 elements
manganese group element
manganese group elements
manganese group element atom
group 7 elements
IUPAC
manganese group element
ChEBI
manganese group elements
ChEBI
group 8 elements
iron group element
iron group elements
iron group element atom
group 8 elements
IUPAC
iron group element
ChEBI
iron group elements
ChEBI
group 10 elements
nickel group element
nickel group elements
nickel group element atom
group 10 elements
IUPAC
nickel group element
ChEBI
nickel group elements
ChEBI
group 11 elements
coinage metals
copper group element
copper group elements
copper group element atom
group 11 elements
IUPAC
coinage metals
ChEBI
copper group element
ChEBI
copper group elements
ChEBI
oxoacids of sulfur
sulfur oxoacids
sulfur oxoacid
oxoacids of sulfur
ChEBI
sulfur oxoacids
ChEBI
A hydracid is a compound which contains hydrogen that is not bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
hydracid
hydracids
hydracid
hydracid
IUPAC
hydracids
ChEBI
pnictogen oxoacids
pnictogen oxoacid
pnictogen oxoacids
ChEBI
sulfur oxoacid derivative
sulfur oxoacid derivatives
sulfur oxoacid derivative
sulfur oxoacid derivative
ChEBI
sulfur oxoacid derivatives
ChEBI
monoatomic monoanions
monoatomic monoanion
monoatomic monoanions
ChEBI
elemental chlorine
atomic chlorine
monoatomic chlorine
atomic chlorine
ChEBI
monoatomic halogens
monoatomic halogen
monoatomic halogens
ChEBI
elemental halogen
elemental halogens
elemental halogen
elemental halogen
ChEBI
elemental halogens
ChEBI
diatomic chlorine
nitrogen oxoacids
oxoacids of nitrogen
nitrogen oxoacid
nitrogen oxoacids
ChEBI
oxoacids of nitrogen
ChEBI
A pnictogen oxoacid which contains phosphorus and oxygen, at least one hydrogen atom bound to oxygen, and forms an ion by the loss of one or more protons.
phosphorus oxoacid
Oxosaeure des Phosphors
oxoacids of phosphorus
phosphorus oxoacids
phosphorus oxoacid
phosphorus oxoacid
ChEBI
Oxosaeure des Phosphors
ChEBI
oxoacids of phosphorus
ChEBI
phosphorus oxoacids
ChEBI
nitrogen oxoanion
nitrogen oxoanions
oxoanions of nitrogen
nitrogen oxoanion
nitrogen oxoanion
ChEBI
nitrogen oxoanions
ChEBI
oxoanions of nitrogen
ChEBI
pnictogen oxoanion
pnictogen oxoanions
pnictogen oxoanion
pnictogen oxoanion
ChEBI
pnictogen oxoanions
ChEBI
phosphorus oxoanion
oxoanions of phosphorus
phosphorus oxoanions
phosphorus oxoanion
phosphorus oxoanion
ChEBI
oxoanions of phosphorus
ChEBI
phosphorus oxoanions
ChEBI
elemental phosphorus
elemental pnictogen
elemental pnictogens
elemental pnictogen
elemental pnictogen
ChEBI
elemental pnictogens
ChEBI
atomic phosphorus
monoatomic phosphorus
atomic phosphorus
ChEBI
sulfur oxoanion
oxoanions of sulfur
sulfur oxoanions
sulfur oxoanion
sulfur oxoanion
ChEBI
oxoanions of sulfur
ChEBI
sulfur oxoanions
ChEBI
chalcogen oxoacid
chalcogen oxoacids
chalcogen oxoacid
chalcogen oxoacid
ChEBI
chalcogen oxoacids
ChEBI
chalcogen oxoanion
chalcogen oxoanions
chalcogen oxoanion
chalcogen oxoanion
ChEBI
chalcogen oxoanions
ChEBI
selenium oxoanion
oxoanions of selenium
selenium oxoanions
selenium oxoanion
selenium oxoanion
ChEBI
oxoanions of selenium
ChEBI
selenium oxoanions
ChEBI
selenium oxoacid
oxoacids of selenium
selenium oxoacids
selenium oxoacid
selenium oxoacid
ChEBI
oxoacids of selenium
ChEBI
selenium oxoacids
ChEBI
hydrogenselenate
hydroxidotrioxidoselenate(1-)
HSeO4(-)
[SeO3(OH)](-)
hydrogenselenate
hydrogenselenate
IUPAC
hydroxidotrioxidoselenate(1-)
IUPAC
HSeO4(-)
IUPAC
[SeO3(OH)](-)
IUPAC
A molecular entity containing one or more atoms of a transition element.
transition element molecular entities
transition metal molecular entity
transition element molecular entity
transition element molecular entities
ChEBI
transition metal molecular entity
ChEBI
alkali metal cations
alkali metal cation
alkali metal cations
ChEBI
alkaline earth cations
alkaline earth metal cation
alkaline-earth metal cations
alkaline earth cation
alkaline earth cations
ChEBI
alkaline earth metal cation
ChEBI
alkaline-earth metal cations
ChEBI
transition element cations
transition metal cation
transition element cation
transition element cations
ChEBI
transition metal cation
ChEBI
An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity.
elemental metal
elemental metals
metal element
metal elements
metals
metal atom
elemental metal
ChEBI
elemental metals
ChEBI
metal element
ChEBI
metal elements
ChEBI
metals
ChEBI
sulfur hydride
hydrides of sulfur
sulfur hydrides
sulphur hydrides
sulfur hydride
sulfur hydride
ChEBI
hydrides of sulfur
ChEBI
sulfur hydrides
ChEBI
sulphur hydrides
ChEBI
sulfurothioic acid
thiosulfuric acid
thiosulfuric acid
sulfurothioic acid
IUPAC
thiosulfuric acid
IUPAC
hydrogen sulfurothioate
HS2O3(-)
thiosulfate(1-)
hydrogen sulfurothioate
IUPAC
HS2O3(-)
IUPAC
s-block element
s-block elements
s-block element atom
s-block element
ChEBI
s-block elements
ChEBI
Any main group element atom belonging to the p-block of the periodic table.
p-block element
p-block elements
p-block element atom
p-block element
ChEBI
p-block elements
ChEBI
d-block element
d-block elements
d-block element atom
d-block element
ChEBI
d-block elements
ChEBI
A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid.
carboxylic acid
carboxylic acids
Carbonsaeure
Carbonsaeuren
Karbonsaeure
RC(=O)OH
acide carboxylique
acides carboxyliques
acido carboxilico
acidos carboxilicos
carboxylic acid
carboxylic acid
IUPAC
carboxylic acids
IUPAC
Carbonsaeure
ChEBI
Carbonsaeuren
ChEBI
Karbonsaeure
ChEBI
RC(=O)OH
IUPAC
acide carboxylique
IUPAC
acides carboxyliques
IUPAC
acido carboxilico
IUPAC
acidos carboxilicos
IUPAC
A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
main group compounds
main group molecular entities
main group molecular entity
main group compounds
ChEBI
main group molecular entities
ChEBI
boron group molecular entities
boron group molecular entity
boron group molecular entities
ChEBI
carbon group molecular entity
carbon group molecular entities
carbon group molecular entity
carbon group molecular entity
ChEBI
carbon group molecular entities
ChEBI
noble gas molecular entity
Any molecule that consists of a series of atoms joined together to form a ring.
cyclic compounds
cyclic compound
cyclic compounds
ChEBI
hydrogen compounds
hydrogen molecular entities
hydrogen molecular entity
hydrogen compounds
ChEBI
hydrogen molecular entities
ChEBI
boron
trona elemental boron
elemental boron
boron
NIST_Chemistry_WebBook
trona elemental boron
NIST_Chemistry_WebBook
A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character.
aromatic compounds
aromatic molecular entity
aromatics
aromatische Verbindungen
aromatic compound
aromatic compounds
IUPAC
aromatic molecular entity
IUPAC
aromatics
ChEBI
aromatische Verbindungen
ChEBI
organic aromatic compounds
organic aromatic compound
organic aromatic compounds
ChEBI
zinc group molecular entities
zinc group molecular entity
zinc group molecular entities
ChEBI
An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
s-block molecular entity
s-block compounds
s-block molecular entities
s-block molecular entity
s-block molecular entity
ChEBI
s-block compounds
ChEBI
s-block molecular entities
ChEBI
A main group molecular entity that contains one or more atoms of a p-block element.
p-block compounds
p-block molecular entities
p-block molecular entitiy
p-block molecular entity
p-block compounds
ChEBI
p-block molecular entities
ChEBI
p-block molecular entitiy
ChEBI
A d-block molecular entity is a molecular entity containing one or more atoms of a d-block element.
d-block molecular entity
d-block compounds
d-block molecular entities
d-block molecular entity
d-block molecular entity
ChEBI
d-block compounds
ChEBI
d-block molecular entities
ChEBI
helium molecular entity
Hydrides are chemical compounds of hydrogen with other chemical elements.
hydrides
oxygen hydride
hydrides of oxygen
oxygen hydrides
oxygen hydride
oxygen hydride
ChEBI
hydrides of oxygen
ChEBI
oxygen hydrides
ChEBI
biomacromolecule
A cation consisting of more than one atom.
polyatomic cations
polyatomic cation
polyatomic cations
ChEBI
A carboxylic acid containing one or more amino groups.
Aminocarbonsaeure
Aminokarbonsaeure
Aminosaeure
amino acids
amino acid
Aminocarbonsaeure
ChEBI
Aminokarbonsaeure
ChEBI
Aminosaeure
ChEBI
amino acids
ChEBI
copper group molecular entity
copper group molecular entities
copper group molecular entity
copper group molecular entity
ChEBI
copper group molecular entities
ChEBI
Any organic molecule that consists of atoms connected in the form of a ring.
organic cyclic compounds
organic cyclic compound
organic cyclic compounds
ChEBI
A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2).
heteroarenes
hetarenes
heteroarene
heteroarenes
IUPAC
hetarenes
IUPAC
macromolecule
A substance used in a chemical reaction to detect, measure, examine, or produce other substances.
reagent
reactif
reactivo
reagents
reagent
reagent
IUPAC
reactif
IUPAC
reactivo
IUPAC
reagents
ChEBI
A substance used to destroy pests of the phylum Mollusca.
molluscicides
molluscicide
molluscicides
ChEBI
metal-tetrapyrrole
metal-tetrapyrrole complex
metallotetrapyrroles
metallotetrapyrrole
metal-tetrapyrrole
ChEBI
metal-tetrapyrrole complex
ChEBI
metallotetrapyrroles
ChEBI
Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals.
macronutrients
macronutrient
macronutrients
ChEBI
halide salts
halides
halide salt
halide salts
ChEBI
halides
ChEBI
magnesium salts
magnesium salt
magnesium salts
ChEBI
magnesium coordination entity
magnesium coordination compounds
magnesium coordination entities
magnesium coordination entity
magnesium coordination entity
ChEBI
magnesium coordination compounds
ChEBI
magnesium coordination entities
ChEBI
metallic bases
metallic base
metallic bases
ChEBI
alkaline earth base
alkaline earth bases
alkaline earth hydroxides
alkaline-earth bases
alkaline-earth hydroxides
alkaline earth hydroxide
alkaline earth base
ChEBI
alkaline earth bases
ChEBI
alkaline earth hydroxides
ChEBI
alkaline-earth bases
ChEBI
alkaline-earth hydroxides
ChEBI
nitrogen hydrides
nitrogen hydride
nitrogen hydrides
ChEBI
Saturated acyclic nitrogen hydrides having the general formula NnHn+2.
azanes
azane
azanes
ChEBI
calcium hydroxides
calcium hydroxide
calcium hydroxides
ChEBI
elemental calcium
Kalziumsalz
Kalziumsalze
calcium salts
calcium salt
Kalziumsalz
ChEBI
Kalziumsalze
ChEBI
calcium salts
ChEBI
sulfate salts
sulfates
sulphate salts
sulphates
sulfate salt
sulfate salts
ChEBI
sulfates
ChEBI
sulphate salts
ChEBI
sulphates
ChEBI
A metal sulfate compound having zinc(2+) as the counterion.
zinc sulfate
ZnSO4
zinc sulfate (1:1)
zinc sulfate anhydrous
zinc sulphate
zinc(2+) sulfate
zinc(II) sulfate
zinc sulfate
zinc sulfate
IUPAC
ZnSO4
IUPAC
zinc sulfate (1:1)
ChemIDplus
zinc sulfate anhydrous
ChemIDplus
zinc sulphate
ChemIDplus
zinc(2+) sulfate
IUPAC
zinc(II) sulfate
IUPAC
alkaline earth coordination entity
alkaline earth coordination compounds
alkaline earth coordination entities
alkaline earth coordination entity
alkaline earth coordination entity
ChEBI
alkaline earth coordination compounds
ChEBI
alkaline earth coordination entities
ChEBI
A substance that diminishes the rate of a chemical reaction.
inhibitor
inhibidor
inhibiteur
inhibitors
inhibitor
inhibitor
IUPAC
inhibidor
ChEBI
inhibiteur
ChEBI
inhibitors
ChEBI
A substance that increases the rate of a reaction without modifying the overall standard Gibbs energy change in the reaction.
catalyst
Katalysator
catalizador
catalyseur
catalyst
catalyst
IUPAC
Katalysator
ChEBI
catalizador
ChEBI
catalyseur
ChEBI
Any substance or mixture of substances that, in solution (typically aqueous), resists change in pH upon addition of small amounts of acid or base.
buffer compound
buffer compounds
buffer
buffer compound
ChEBI
buffer compounds
ChEBI
A derivative of ammonium, NH4(+), in which one (or more) of the hydrogens bonded to the nitrogen have been replaced with univalent organyl groups. The substituting carbon of the organyl group must not itself be directly attached to a heteroatom (thereby excluding protonated amides, hemiaminals, etc).
ammonium ion derivatives
azanium ion derivative
azanium ion derivatives
ammonium ion derivative
ammonium ion derivatives
ChEBI
azanium ion derivative
ChEBI
azanium ion derivatives
ChEBI
Compounds (NH4(+))Y(-) and derivatives, in which one or more of the hydrogens bonded to nitrogen have been replaced with univalent groups.
azanium compounds
ammonium compounds
ammonium compound
azanium compounds
IUPAC
ammonium compounds
ChEBI
ammonium compounds
IUPAC
Any heteroorganic entity containing at least one carbon-nitrogen bond.
organonitrogen compounds
organonitrogens
organonitrogen compound
organonitrogen compounds
IUPAC
organonitrogens
ChEBI
An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
oxoanion
oxoacid anions
oxoanions
oxoanion
oxoanion
ChEBI
oxoacid anions
ChEBI
oxoanions
ChEBI
calcium bis(dihydrogenphosphate)
Ca(H2PO4)2
Calcium biphosphate
Monobasic calcium phosphate
Monocalcium phosphate
acid calcium phosphate
calcium bis(dihydrogen phosphate)
calcium dihydrogen orthophosphate
calcium superphosphate
monocalcium orthophosphate
monocalcium phosphate, monobasic
phosphoric acid, calcium salt (2:1)
primary calcium phosphate
calcium bis(dihydrogenphosphate)
calcium bis(dihydrogenphosphate)
IUPAC
Ca(H2PO4)2
IUPAC
Calcium biphosphate
KEGG_COMPOUND
Monobasic calcium phosphate
KEGG_COMPOUND
Monocalcium phosphate
KEGG_COMPOUND
acid calcium phosphate
ChemIDplus
calcium bis(dihydrogen phosphate)
ChemIDplus
calcium dihydrogen orthophosphate
ChemIDplus
calcium superphosphate
ChemIDplus
monocalcium orthophosphate
ChemIDplus
monocalcium phosphate, monobasic
ChemIDplus
phosphoric acid, calcium salt (2:1)
ChemIDplus
primary calcium phosphate
ChemIDplus
A class of drugs producing both physiological and psychological effects through a variety of mechanisms involving the central nervous system.
CNS agent
CNS drugs
central nervous system agents
central nervous system drug
CNS agent
ChEBI
CNS drugs
ChEBI
central nervous system agents
ChEBI
alkali metal salts
alkali metal salt
alkali metal salts
ChEBI
An agent capable of relieving pain without the loss of consciousness or without producing anaesthesia. In addition, analgesic is a role played by a compound which is exhibited by a capability to cause a reduction of pain symptoms.
analgesic
An EC 1.2.1.* (oxidoreductase acting on donor aldehyde/oxo group with NAD(+) or NADP(+) as acceptor) inhibitor that interferes with the action of aldehyde dehydrogenase (NAD(+)), EC 1.2.1.3.
CoA-independent aldehyde dehydrogenase inhibitor
CoA-independent aldehyde dehydrogenase inhibitors
EC 1.2.1.3 (aldehyde dehydrogenase (NAD(+))) inhibitor
EC 1.2.1.3 (aldehyde dehydrogenase (NAD(+))) inhibitors
EC 1.2.1.3 [aldehyde dehydrogenase (NAD(+))] inhibitors
EC 1.2.1.3 inhibitor
EC 1.2.1.3 inhibitors
NAD-aldehyde dehydrogenase inhibitor
NAD-aldehyde dehydrogenase inhibitors
NAD-dependent 4-hydroxynonenal dehydrogenase inhibitor
NAD-dependent 4-hydroxynonenal dehydrogenase inhibitors
NAD-dependent aldehyde dehydrogenase inhibitor
NAD-dependent aldehyde dehydrogenase inhibitors
NAD-linked aldehyde dehydrogenase inhibitor
NAD-linked aldehyde dehydrogenase inhibitors
aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3) inhibitor
aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3) inhibitors
aldehyde dehydrogenase (NAD(+)) inhibitor
aldehyde dehydrogenase (NAD(+)) inhibitors
aldehyde dehydrogenase (NAD) inhibitor
aldehyde dehydrogenase (NAD) inhibitors
aldehyde dehydrogenase inhibitor
aldehyde dehydrogenase inhibitors
m-methylbenzaldehyde dehydrogenase inhibitor
m-methylbenzaldehyde dehydrogenase inhibitors
propionaldehyde dehydrogenase inhibitor
propionaldehyde dehydrogenase inhibitors
EC 1.2.1.3 [aldehyde dehydrogenase (NAD(+))] inhibitor
CoA-independent aldehyde dehydrogenase inhibitor
ChEBI
CoA-independent aldehyde dehydrogenase inhibitors
ChEBI
EC 1.2.1.3 (aldehyde dehydrogenase (NAD(+))) inhibitor
ChEBI
EC 1.2.1.3 (aldehyde dehydrogenase (NAD(+))) inhibitors
ChEBI
EC 1.2.1.3 [aldehyde dehydrogenase (NAD(+))] inhibitors
ChEBI
EC 1.2.1.3 inhibitor
ChEBI
EC 1.2.1.3 inhibitors
ChEBI
NAD-aldehyde dehydrogenase inhibitor
ChEBI
NAD-aldehyde dehydrogenase inhibitors
ChEBI
NAD-dependent 4-hydroxynonenal dehydrogenase inhibitor
ChEBI
NAD-dependent 4-hydroxynonenal dehydrogenase inhibitors
ChEBI
NAD-dependent aldehyde dehydrogenase inhibitor
ChEBI
NAD-dependent aldehyde dehydrogenase inhibitors
ChEBI
NAD-linked aldehyde dehydrogenase inhibitor
ChEBI
NAD-linked aldehyde dehydrogenase inhibitors
ChEBI
aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3) inhibitor
ChEBI
aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3) inhibitors
ChEBI
aldehyde dehydrogenase (NAD(+)) inhibitor
ChEBI
aldehyde dehydrogenase (NAD(+)) inhibitors
ChEBI
aldehyde dehydrogenase (NAD) inhibitor
ChEBI
aldehyde dehydrogenase (NAD) inhibitors
ChEBI
aldehyde dehydrogenase inhibitor
ChEBI
aldehyde dehydrogenase inhibitors
ChEBI
m-methylbenzaldehyde dehydrogenase inhibitor
ChEBI
m-methylbenzaldehyde dehydrogenase inhibitors
ChEBI
propionaldehyde dehydrogenase inhibitor
ChEBI
propionaldehyde dehydrogenase inhibitors
ChEBI
A loosely defined group of drugs that tend to reduce the activity of the central nervous system.
CNS depressants
central nervous system depressants
central nervous system depressant
CNS depressants
ChEBI
central nervous system depressants
ChEBI
An addition compound contains two or more simpler compounds that can be packed in a definite ratio into a crystal. The term covers donor-acceptor complexes (adducts) and a variety of lattice compounds.
addition compounds
addition compound
addition compounds
ChEBI
An addition compound that contains water in weak chemical combination with another compound.
Hydrat
hidrato
hidratos
hydrates
hydrate
Hydrat
ChEBI
hidrato
ChEBI
hidratos
ChEBI
hydrates
ChEBI
A drug that affects the rate or intensity of cardiac contraction, blood vessel diameter or blood volume.
cardiovascular agent
cardiovascular drugs
cardiovascular drug
cardiovascular agent
ChEBI
cardiovascular drugs
ChEBI
A negative ion consisting solely of carbon and oxygen atoms, and therefore having the general formula CxOy(n-) for some integers x, y and n.
carbon oxoanion
carbon oxoanions
oxocarbon anion
oxocarbon anions
carbon oxoanion
carbon oxoanion
ChEBI
carbon oxoanions
ChEBI
oxocarbon anion
ChEBI
oxocarbon anions
ChEBI
carbon oxoacids
oxoacids of carbon
carbon oxoacid
carbon oxoacids
ChEBI
oxoacids of carbon
ChEBI
An EC 3.1.3.* (phosphoric monoester hydrolase) inhibitor which interferes with the activity of the enzyme protein tyrosine phosphatases (PTPs), EC 3.1.3.48, involved in the removal of phosphate groups from phosphorylated tyrosine residues on proteins.
EC 3.1.3.48 (protein-tyrosine-phosphatase) inhibitors
EC 3.1.3.48 inhibitor
EC 3.1.3.48 inhibitors
PPT-phosphatase inhibitor
PPT-phosphatase inhibitors
PTP-phosphatase inhibitor
PTP-phosphatase inhibitors
PTPase inhibitor
PTPase inhibitors
[phosphotyrosine]protein phosphatase inhibitor
[phosphotyrosine]protein phosphatase inhibitors
phosphoprotein phosphatase (phosphotyrosine) inhibitor
phosphoprotein phosphatase (phosphotyrosine) inhibitors
phosphotyrosine histone phosphatase inhibitor
phosphotyrosine histone phosphatase inhibitors
phosphotyrosine phosphatase inhibitor
phosphotyrosine phosphatase inhibitors
phosphotyrosine protein phosphatase inhibitor
phosphotyrosine protein phosphatase inhibitors
phosphotyrosylprotein phosphatase inhibitor
phosphotyrosylprotein phosphatase inhibitors
protein phosphotyrosine phosphatase inhibitor
protein phosphotyrosine phosphatase inhibitors
protein tyrosine phosphatase inhibitor
protein tyrosine phosphatase inhibitors
protein-tyrosine-phosphatase (EC 3.1.3.48) inhibitor
protein-tyrosine-phosphatase (EC 3.1.3.48) inhibitors
protein-tyrosine-phosphatase inhibitor
protein-tyrosine-phosphatase inhibitors
protein-tyrosine-phosphate phosphohydrolase inhibitor
protein-tyrosine-phosphate phosphohydrolase inhibitors
tyrosine O-phosphate phosphatase inhibitor
tyrosine O-phosphate phosphatase inhibitors
tyrosylprotein phosphatase inhibitor
tyrosylprotein phosphatase inhibitors
EC 3.1.3.48 (protein-tyrosine-phosphatase) inhibitor
EC 3.1.3.48 (protein-tyrosine-phosphatase) inhibitors
ChEBI
EC 3.1.3.48 inhibitor
ChEBI
EC 3.1.3.48 inhibitors
ChEBI
PPT-phosphatase inhibitor
ChEBI
PPT-phosphatase inhibitors
ChEBI
PTP-phosphatase inhibitor
ChEBI
PTP-phosphatase inhibitors
ChEBI
PTPase inhibitor
ChEBI
PTPase inhibitors
ChEBI
[phosphotyrosine]protein phosphatase inhibitor
ChEBI
[phosphotyrosine]protein phosphatase inhibitors
ChEBI
phosphoprotein phosphatase (phosphotyrosine) inhibitor
ChEBI
phosphoprotein phosphatase (phosphotyrosine) inhibitors
ChEBI
phosphotyrosine histone phosphatase inhibitor
ChEBI
phosphotyrosine histone phosphatase inhibitors
ChEBI
phosphotyrosine phosphatase inhibitor
ChEBI
phosphotyrosine phosphatase inhibitors
ChEBI
phosphotyrosine protein phosphatase inhibitor
ChEBI
phosphotyrosine protein phosphatase inhibitors
ChEBI
phosphotyrosylprotein phosphatase inhibitor
ChEBI
phosphotyrosylprotein phosphatase inhibitors
ChEBI
protein phosphotyrosine phosphatase inhibitor
ChEBI
protein phosphotyrosine phosphatase inhibitors
ChEBI
protein tyrosine phosphatase inhibitor
ChEBI
protein tyrosine phosphatase inhibitors
ChEBI
protein-tyrosine-phosphatase (EC 3.1.3.48) inhibitor
ChEBI
protein-tyrosine-phosphatase (EC 3.1.3.48) inhibitors
ChEBI
protein-tyrosine-phosphatase inhibitor
ChEBI
protein-tyrosine-phosphatase inhibitors
ChEBI
protein-tyrosine-phosphate phosphohydrolase inhibitor
ChEBI
protein-tyrosine-phosphate phosphohydrolase inhibitors
ChEBI
tyrosine O-phosphate phosphatase inhibitor
ChEBI
tyrosine O-phosphate phosphatase inhibitors
ChEBI
tyrosylprotein phosphatase inhibitor
ChEBI
tyrosylprotein phosphatase inhibitors
ChEBI
A drug used to cause dilation of the blood vessels.
vasodilator
vasodilator agents
vasodilator agent
vasodilator
ChEBI
vasodilator agents
ChEBI
A drug used to prevent seizures or reduce their severity.
Antiepileptika
Antiepileptikum
Antikonvulsiva
Antikonvulsivum
anti-convulsant
anti-convulsants
anti-convulsive agent
anti-convulsive agents
anticonvulsants
anticonvulsive agent
anticonvulsive agents
antiepileptic
antiepileptics
antiepileptique
antiepileptiques
anticonvulsant
Antiepileptika
ChEBI
Antiepileptikum
ChEBI
Antikonvulsiva
ChEBI
Antikonvulsivum
ChEBI
anti-convulsant
ChEBI
anti-convulsants
ChEBI
anti-convulsive agent
ChEBI
anti-convulsive agents
ChEBI
anticonvulsants
ChEBI
anticonvulsive agent
ChEBI
anticonvulsive agents
ChEBI
antiepileptic
ChEBI
antiepileptics
ChEBI
antiepileptique
ChEBI
antiepileptiques
ChEBI
An antimicrobial agent that destroys fungi by suppressing their ability to grow or reproduce.
antifungal
antifungal agents
antifungal drug
antifungal drugs
antifungals
antifungal agent
antifungal
ChEBI
antifungal agents
ChEBI
antifungal drug
ChEBI
antifungal drugs
ChEBI
antifungals
ChEBI
A phosphorus oxoanion that is the conjugate base of phosphoric acid.
Pi
phosphate
phosphate ions
phosphate ion
Pi
ChEBI
phosphate
ChEBI
phosphate ions
ChEBI
pnictogen hydride
pnictogen hydrides
pnictogen hydride
pnictogen hydride
ChEBI
pnictogen hydrides
ChEBI
inorganic chloride salt
inorganic chloride salts
inorganic chlorides
inorganic chloride
inorganic chloride salt
ChEBI
inorganic chloride salts
ChEBI
inorganic chlorides
ChEBI
macrocyclic tetrapyrroles
cyclic tetrapyrroles
macrocyclic tetrapyrrole
cyclic tetrapyrrole
macrocyclic tetrapyrroles
IUPAC
cyclic tetrapyrroles
ChEBI
macrocyclic tetrapyrrole
ChEBI
Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin).
leptons
lepton
leptons
ChEBI
Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy).
baryons
baryon
baryons
ChEBI
Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi.
fermion
fermions
fermion
fermion
IUPAC
fermions
ChEBI
A particle smaller than an atom.
subatomic particles
subatomic particle
subatomic particles
ChEBI
A subatomic particle known to have substructure (i.e. consisting of smaller particles).
composite particles
composite particle
composite particles
ChEBI
Hadron is a subatomic particle which experiences the strong force.
hadrons
hadron
hadrons
ChEBI
A nucleus or any of its constituents in any of their energy states.
nuclear particle
nuclear particle
nuclear particle
IUPAC
Any molecular entity consisting of more than one atom.
polyatomic entities
polyatomic entity
polyatomic entities
ChEBI
An ion consisting of more than one atom.
polyatomic ions
polyatomic ion
polyatomic ions
ChEBI
phosphorus oxoacid derivative
phosphorus oxoacid derivative
phosphorus oxoacid derivative
ChEBI
phosphorus oxoacids and derivatives
alkaline earth salts
alkaline earth salt
alkaline earth salts
ChEBI
A coordination entity in which the central atom to which the ligands are attached comes from groups 1, 2, 13, 14, 15, 16, 17, or 18 of the periodic table.
main group coordination compounds
main-group coordination entities
main-group coordination entity
main group coordination compounds
ChEBI
main-group coordination entities
ChEBI
Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives.
carbonyl compounds
carbonyl compound
carbonyl compounds
IUPAC
Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element.
oxo compounds
organic oxo compounds
organic oxo compound
oxo compounds
IUPAC
organic oxo compounds
ChEBI
Compounds consisting of two acyl groups bonded to the same oxygen atom acyl-O-acyl.
acid anhydride
acid anhydrides
acid anhydrides
anhydride d'acide
acid anhydride
acid anhydride
IUPAC
acid anhydrides
IUPAC
acid anhydrides
ChEBI
anhydride d'acide
ChEBI
acyclic acid anhydride
acyclic acid anhydrides
acyclic acid anhydrides
acyclic anhydrides
acyclic acid anhydride
acyclic acid anhydride
ChEBI
acyclic acid anhydrides
IUPAC
acyclic acid anhydrides
ChEBI
acyclic anhydrides
IUPAC
pseudohalide group
halogenoid group
pseudohalido group
pseudohalo groups
pseudohalogen group
pseudohalo group
pseudohalide group
IUPAC
halogenoid group
ChEBI
pseudohalido group
ChEBI
pseudohalo groups
ChEBI
pseudohalogen group
IUPAC
pseudohalide ions
pseudohalide anions
pseudohalides
pseudohalogen anion
pseudohalogen ion
pseudohalide anion
pseudohalide ions
IUPAC
pseudohalide anions
ChEBI
pseudohalides
ChEBI
pseudohalogen anion
ChEBI
pseudohalogen ion
ChEBI
polyatomic monoanions
polyatomic monoanion
polyatomic monoanions
ChEBI
monoanions
monoanion
monoanions
ChEBI
hydrogen isocyanide
nitriliomethanide
CNH
HN(+)#C(-)
HNC
hydroisocyanic acid
hydrogen isocyanide
hydrogen isocyanide
NIST_Chemistry_WebBook
nitriliomethanide
IUPAC
CNH
ChEBI
HN(+)#C(-)
IUPAC
HNC
NIST_Chemistry_WebBook
hydroisocyanic acid
ChEBI
chalcogen hydride
chalcogen hydrides
chalcogen hydride
chalcogen hydride
ChEBI
chalcogen hydrides
ChEBI
argon molecular entity
inorganic ions
inorganic ion
inorganic ions
ChEBI
inorganic cations
inorganic cation
inorganic cations
ChEBI
A monoatomic or polyatomic species having one or more elementary charges of the proton.
Cation
cation
Kation
Kationen
cationes
cations
cation
Cation
KEGG_COMPOUND
cation
ChEBI
cation
IUPAC
Kation
ChEBI
Kationen
ChEBI
cationes
ChEBI
cations
ChEBI
chalcocarbonic acid
chalcocarbonic acids
chalcocarbonic acids
chalcocarbonic acid
chalcocarbonic acid
ChEBI
chalcocarbonic acids
IUPAC
chalcocarbonic acids
ChEBI
An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
organochalcogen compound
organochalcogen compounds
organochalcogen compound
organochalcogen compound
ChEBI
organochalcogen compounds
ChEBI
An organochalcogen compound containing at least one carbon-oxygen bond.
organooxygen compound
organooxygen compounds
organooxygen compound
organooxygen compound
ChEBI
organooxygen compounds
ChEBI
amino-acid anion
amino acid anions
amino-acid anions
amino-acid anion
amino-acid anion
ChEBI
amino acid anions
ChEBI
amino-acid anions
ChEBI
organic hydride
mononuclear parent hydrides
mononuclear hydride
mononuclear hydrides
mononuclear parent hydride
mononuclear parent hydrides
IUPAC
mononuclear hydride
ChEBI
mononuclear hydrides
IUPAC
elemental sodium
elemental potassium
elemental zinc
elemental copper
An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid).
Acid
acid
Saeure
Saeuren
acide
acido
acids
acid
Acid
KEGG_COMPOUND
acid
IUPAC
Saeure
ChEBI
Saeuren
ChEBI
acide
IUPAC
acido
ChEBI
acids
ChEBI
A molecular entity consisting of two or more chemical elements.
chemical compound
heteroatomic molecular entities
heteroatomic molecular entity
chemical compound
ChEBI
heteroatomic molecular entities
ChEBI
Any heteroatomic molecular entity that is a chemical compound of halogen with other chemical elements.
halides
halide
halides
ChEBI
An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom.
carboxamides
carboxamides
primary carboxamide
carboxamide
carboxamides
IUPAC
carboxamides
ChEBI
primary carboxamide
ChEBI
acyclic phosphorus acid anhydrides
acyclic phosphorus acid anhydride
acyclic phosphorus acid anhydrides
ChEBI
sulfuric acid derivative
sulfuric acid derivatives
sulfuric acid derivative
sulfuric acid derivative
ChEBI
sulfuric acid derivatives
ChEBI
A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid.
carboacyl groups
carboxylic acyl group
carboxylic acyl groups
carboacyl group
carboacyl groups
IUPAC
carboxylic acyl group
IUPAC
carboxylic acyl groups
IUPAC
phosphate salt
Phosphatsalz
Phosphatsalze
phosphate salts
phosphate salt
phosphate salt
ChEBI
Phosphatsalz
ChEBI
Phosphatsalze
ChEBI
phosphate salts
ChEBI
A drug used for the treatment or prevention of cardiac arrhythmias. Anti-arrhythmia drugs may affect the polarisation-repolarisation phase of the action potential, its excitability or refractoriness, or impulse conduction or membrane responsiveness within cardiac fibres.
anti-arrhythmia agent
antiarrhythmic agent
anti-arrhythmia drug
anti-arrhythmia agent
ChEBI
antiarrhythmic agent
ChEBI
A compound composed of two or more pyrrole units.
PPys
poly(pyrrole)s
polypyrroles
polypyrrole
PPys
ChEBI
poly(pyrrole)s
ChEBI
polypyrroles
ChEBI
Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms.
heterocyclic organonitrogen compounds
organonitrogen heterocyclic compounds
organonitrogen heterocyclic compound
heterocyclic organonitrogen compounds
ChEBI
organonitrogen heterocyclic compounds
ChEBI
A ligand with two or more separate binding sites that can bind to a single metallic central atom, forming a chelate.
Chelating agent
Metal chelator
chelating agents
chelators
complexon
chelator
Chelating agent
KEGG_COMPOUND
Metal chelator
KEGG_COMPOUND
chelating agents
ChEBI
chelators
ChEBI
complexon
ChEBI
monocyclic heteroarenes
monocyclic heteroarene
monocyclic heteroarenes
ChEBI
One of a class of drugs that acts by selective inhibition of calcium influx through cell membranes or on the release and binding of calcium in intracellular pools.
calcium channel antagonist
calcium channel antagonists
calcium channel blockers
calcium channel blocker
calcium channel antagonist
ChEBI
calcium channel antagonists
ChEBI
calcium channel blockers
ChEBI
magnesium tetrapyrroles
magnesium tetrapyrrole
magnesium tetrapyrroles
ChEBI
electron-transport chain inhibitor
respiratory-chain inhibitor
An EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor that interferes with the action of cytochrome c oxidase (EC 1.9.3.1).
CcO inhibitor
EC 1.9.3.1 (cytochrome c oxidase) inhibitors
EC 1.9.3.1 inhibitor
EC 1.9.3.1 inhibitors
NADH cytochrome c oxidase inhibitor
NADH cytochrome c oxidase inhibitors
Warburg's respiratory enzyme inhibitor
Warburg's respiratory enzyme inhibitors
complex IV (mitochondrial electron transport) inhibitor
complex IV (mitochondrial electron transport) inhibitors
cytochrome a3 inhibitor
cytochrome a3 inhibitors
cytochrome aa3 inhibitor
cytochrome aa3 inhibitors
cytochrome c oxidase (EC 1.9.3.1) inhibitor
cytochrome c oxidase (EC 1.9.3.1) inhibitors
cytochrome c oxidase inhibitor
cytochrome c oxidase inhibitors
cytochrome oxidase inhibitor
cytochrome oxidase inhibitors
cytochrome-c oxidase inhibitor
cytochrome-c oxidase inhibitors
ferrocytochrome c oxidase inhibitor
ferrocytochrome c oxidase inhibitors
ferrocytochrome-c:oxygen oxidoreductase inhibitor
ferrocytochrome-c:oxygen oxidoreductase inhibitors
indophenol oxidase inhibitor
indophenol oxidase inhibitors
indophenolase inhibitor
indophenolase inhibitors
mitochondrial complex IV inhibitor
mitochondrial complex IV inhibitors
mitochondrial cytochrome-c oxidase inhibitors
EC 1.9.3.1 (cytochrome c oxidase) inhibitor
CcO inhibitor
ChEBI
EC 1.9.3.1 (cytochrome c oxidase) inhibitors
ChEBI
EC 1.9.3.1 inhibitor
ChEBI
EC 1.9.3.1 inhibitors
ChEBI
NADH cytochrome c oxidase inhibitor
ChEBI
NADH cytochrome c oxidase inhibitors
ChEBI
Warburg's respiratory enzyme inhibitor
ChEBI
Warburg's respiratory enzyme inhibitors
ChEBI
complex IV (mitochondrial electron transport) inhibitor
ChEBI
complex IV (mitochondrial electron transport) inhibitors
ChEBI
cytochrome a3 inhibitor
ChEBI
cytochrome a3 inhibitors
ChEBI
cytochrome aa3 inhibitor
ChEBI
cytochrome aa3 inhibitors
ChEBI
cytochrome c oxidase (EC 1.9.3.1) inhibitor
ChEBI
cytochrome c oxidase (EC 1.9.3.1) inhibitors
ChEBI
cytochrome c oxidase inhibitor
ChEBI
cytochrome c oxidase inhibitors
ChEBI
cytochrome oxidase inhibitor
ChEBI
cytochrome oxidase inhibitors
ChEBI
cytochrome-c oxidase inhibitor
ChEBI
cytochrome-c oxidase inhibitors
ChEBI
ferrocytochrome c oxidase inhibitor
ChEBI
ferrocytochrome c oxidase inhibitors
ChEBI
ferrocytochrome-c:oxygen oxidoreductase inhibitor
ChEBI
ferrocytochrome-c:oxygen oxidoreductase inhibitors
ChEBI
indophenol oxidase inhibitor
ChEBI
indophenol oxidase inhibitors
ChEBI
indophenolase inhibitor
ChEBI
indophenolase inhibitors
ChEBI
mitochondrial complex IV inhibitor
ChEBI
mitochondrial complex IV inhibitors
ChEBI
mitochondrial cytochrome-c oxidase inhibitors
ChEBI
Any agent that affects the transport of molecular entities across a biological membrane.
membrane transport modulators
membrane transport modulator
membrane transport modulators
ChEBI
inorganic sodium salts
inorganic sodium salt
inorganic sodium salts
ChEBI
A membrane transport modulator that is able to regulate intracellular calcium levels.
calcium channel modulators
calcium channel modulator
calcium channel modulators
ChEBI
Substance which produces loss of feeling or sensation.
anaesthetic
Anaesthetika
Anaesthetikum
anaesthetics
anesthetic agent
anesthetic drug
anesthetics
anaesthetic
anaesthetic
IUPAC
Anaesthetika
ChEBI
Anaesthetikum
ChEBI
anaesthetics
ChEBI
anesthetic agent
ChEBI
anesthetic drug
ChEBI
anesthetics
ChEBI
calcium cation
calcium cations
calcium cation
calcium cation
ChEBI
calcium cations
ChEBI
calcium ion
calcium ions
calcium ion
calcium ion
ChEBI
calcium ions
ChEBI
A molecular entity capable of donating a hydron to an acceptor (Bronsted base).
Bronsted acid
Bronsted-Saeure
acide de Bronsted
donneur d'hydron
hydron donor
Bronsted acid
Bronsted acid
IUPAC
Bronsted-Saeure
ChEBI
acide de Bronsted
IUPAC
donneur d'hydron
IUPAC
hydron donor
IUPAC
A molecular entity capable of accepting a hydron from a donor (Bronsted acid).
Bronsted base
Bronsted-Base
accepteur d'hydron
base de Bronsted
hydron acceptor
Bronsted base
Bronsted base
IUPAC
Bronsted-Base
ChEBI
accepteur d'hydron
IUPAC
base de Bronsted
IUPAC
hydron acceptor
IUPAC
A molecular entity able to provide a pair of electrons and thus capable of forming a covalent bond with an electron-pair acceptor (Lewis acid), thereby producing a Lewis adduct.
Lewis base
Lewis-Base
base de Lewis
donneur d'une paire d'electrons
electron donor
Lewis base
Lewis base
IUPAC
Lewis-Base
ChEBI
base de Lewis
IUPAC
donneur d'une paire d'electrons
ChEBI
electron donor
ChEBI
antibiotic pesticide
antibiotic nematicide
A volatile or volatilizable chemical compound utilized for control of pests in buildings, soil, grain, as well as during processing of goods to be imported or exported to prevent transfer of exotic organisms.
fumigant pesticide
fumigants
fumigant
fumigant pesticide
ChEBI
fumigants
ChEBI
fumigant insecticides
fumigant insecticide
fumigant insecticides
ChEBI
mite growth regulator
Any chemical substance that inhibits the life-cycle of an organism.
growth regulators
growth regulator
growth regulators
ChEBI
A monovalent inorganic anion that consists of phosphoric acid in which one of the three OH groups has been deprotonated.
dihydrogen(tetraoxidophosphate)(1-)
dihydrogenphosphate
dihydrogentetraoxophosphate(1-)
dihydrogentetraoxophosphate(V)
dihydroxidodioxidophosphate(1-)
DIHYDROGENPHOSPHATE ION
H2PO4(-)
[PO2(OH)2](-)
dihydrogenphosphate
dihydrogen(tetraoxidophosphate)(1-)
IUPAC
dihydrogenphosphate
IUPAC
dihydrogentetraoxophosphate(1-)
IUPAC
dihydrogentetraoxophosphate(V)
IUPAC
dihydroxidodioxidophosphate(1-)
IUPAC
DIHYDROGENPHOSPHATE ION
PDBeChem
H2PO4(-)
IUPAC
[PO2(OH)2](-)
IUPAC
carbonate
trioxidocarbonate(2-)
CARBONATE ION
CO3(2-)
Karbonat
[CO3](2-)
carbonate
carbonate
IUPAC
trioxidocarbonate(2-)
IUPAC
CARBONATE ION
PDBeChem
CO3(2-)
ChEBI
Karbonat
ChEBI
[CO3](2-)
IUPAC
HYDROXY GROUP
hydroxy
hydroxy group
-OH
hydroxyl
hydroxyl group
hydroxy group
HYDROXY GROUP
PDBeChem
hydroxy
IUPAC
hydroxy group
UniProt
-OH
IUPAC
hydroxyl
ChEBI
hydroxyl group
ChEBI
A phosphate ion that is the conjugate base of dihydrogenphosphate.
hydrogen(tetraoxidophosphate)(2-)
hydrogenphosphate
hydrogentetraoxophosphate(2-)
hydrogentetraoxophosphate(V)
hydroxidotrioxidophosphate(2-)
HPO4(2-)
HYDROGENPHOSPHATE ION
INORGANIC PHOSPHATE GROUP
[P(OH)O3](2-)
[PO3(OH)](2-)
hydrogen phosphate
phosphate
hydrogenphosphate
hydrogen(tetraoxidophosphate)(2-)
IUPAC
hydrogenphosphate
IUPAC
hydrogentetraoxophosphate(2-)
IUPAC
hydrogentetraoxophosphate(V)
IUPAC
hydroxidotrioxidophosphate(2-)
IUPAC
HPO4(2-)
IUPAC
HYDROGENPHOSPHATE ION
PDBeChem
INORGANIC PHOSPHATE GROUP
PDBeChem
[P(OH)O3](2-)
MolBase
[PO3(OH)](2-)
IUPAC
hydrogen phosphate
ChEBI
phosphate
UniProt
hydrogen(tetraoxidosulfate)(1-)
hydrogensulfate
hydrogensulfate(1-)
hydrogentetraoxosulfate(1-)
hydrogentetraoxosulfate(VI)
hydroxidotrioxidosulfate(1-)
HSO4(-)
HYDROGEN SULFATE
[SO3(OH)](-)
hydrogensulfate
hydrogen(tetraoxidosulfate)(1-)
IUPAC
hydrogensulfate
IUPAC
hydrogensulfate(1-)
IUPAC
hydrogentetraoxosulfate(1-)
IUPAC
hydrogentetraoxosulfate(VI)
IUPAC
hydroxidotrioxidosulfate(1-)
IUPAC
HSO4(-)
IUPAC
HYDROGEN SULFATE
PDBeChem
[SO3(OH)](-)
IUPAC
OXO GROUP
oxo
=O
oxo group
OXO GROUP
PDBeChem
oxo
IUPAC
=O
IUPAC
In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals').
mineral
Minerale
minerales
minerals
mineraux
mineral
mineral
ChEBI
Minerale
ChEBI
minerales
ChEBI
minerals
ChEBI
mineraux
ChEBI
carbonate salts
carbonate salt
carbonate salts
ChEBI
phosphate minerals
phosphate mineral
phosphate minerals
ChEBI
A liquid that can dissolve other substances (solutes) without any change in their chemical composition.
Loesungsmittel
solvant
solvents
solvent
Loesungsmittel
ChEBI
solvant
ChEBI
solvents
ChEBI
CARBOXY GROUP
carboxy
-C(O)OH
-CO2H
-COOH
carboxyl group
carboxy group
CARBOXY GROUP
PDBeChem
carboxy
IUPAC
-C(O)OH
IUPAC
-CO2H
ChEBI
-COOH
IUPAC
carboxyl group
ChEBI
ammonium salt
Ammoniumsalz
Ammoniumsalze
ammonium salts
ammonium salt
ammonium salt
ChEBI
Ammoniumsalz
ChEBI
Ammoniumsalze
ChEBI
ammonium salts
ChEBI
macrocyclic polypyrroles
cyclic polypyrroles
polypyrrole macrocycles
cyclic polypyrrole
macrocyclic polypyrroles
IUPAC
cyclic polypyrroles
ChEBI
polypyrrole macrocycles
ChEBI
A nitrogen oxoacid of formula HNO3 in which the nitrogen atom is bonded to a hydroxy group and by equivalent bonds to the remaining two oxygen atoms.
Nitric acid
hydrogen trioxonitrate(1-)
hydroxidodioxidonitrogen
trioxonitric acid
HNO3
HONO2
Salpetersaeure
[NO2(OH)]
acide azotique
acide nitrique
azotic acid
hydrogen nitrate
nitric acid
Nitric acid
KEGG_COMPOUND
hydrogen trioxonitrate(1-)
IUPAC
hydroxidodioxidonitrogen
IUPAC
trioxonitric acid
IUPAC
HNO3
IUPAC
HONO2
NIST_Chemistry_WebBook
Salpetersaeure
ChemIDplus
[NO2(OH)]
IUPAC
acide azotique
ChEBI
acide nitrique
ChemIDplus
azotic acid
ChemIDplus
hydrogen nitrate
NIST_Chemistry_WebBook
Schwefeloxide
oxides of sulfur
sulfur oxides
sulfur oxide
Schwefeloxide
ChEBI
oxides of sulfur
ChEBI
sulfur oxides
ChEBI
calcium oxides
A solvent that is composed of polar molecules. Polar solvents can dissolve ionic compounds or ionisable covalent compounds.
polar solvent
polar solvents
polar solvent
polar solvent
IUPAC
polar solvents
ChEBI
A polar solvent that is capable of acting as a hydron (proton) donor.
protogenic solvent
protic solvent
protogenic solvent
IUPAC
Solvent that is capable of acting as a hydron (proton) acceptor.
protophilic solvent
HBA solvent
hydrogen bond acceptor solvent
protophilic solvent
protophilic solvent
IUPAC
HBA solvent
ChEBI
hydrogen bond acceptor solvent
ChEBI
Self-ionizing solvent possessing both characteristics of Bronsted acids and bases.
amphiprotic solvent
amphiprotic solvent
amphiprotic solvent
IUPAC
carbamimidic acid
H2N-C(=NH)-OH
H2N-C(OH)=NH
HO-C(=NH)-NH2
Isoharnstoff
carbamimic acid
carbonamidimidic acid
isourea
pseudourea
carbamimidic acid
carbamimidic acid
IUPAC
H2N-C(=NH)-OH
IUPAC
H2N-C(OH)=NH
IUPAC
HO-C(=NH)-NH2
IUPAC
Isoharnstoff
ChEBI
carbamimic acid
ChemIDplus
carbonamidimidic acid
IUPAC
isourea
ChemIDplus
pseudourea
ChemIDplus
Compounds derived from oxoacids RkE(=O)l(OH)m (l =/= 0) by replacing =O by =NR; thus tautomers of amides. In organic chemistry an unspecified imidic acid is generally a carboximidic acid, RC(=NR)(OH).
imidic acid
imidic acids
imidic acids
imino acids
imidic acid
imidic acid
ChEBI
imidic acids
IUPAC
imidic acids
ChEBI
imino acids
IUPAC
carboximidic acid
carboximidic acids
carboximidic acids
carboximidic acid
carboximidic acid
ChEBI
carboximidic acids
IUPAC
carboximidic acids
ChEBI
A carboximidic acid that is the imidic acid tautomer of urea, H2NC(=NH)OH, and its hydrocarbyl derivatives.
isoureas
isoureas
isourea
isoureas
IUPAC
isoureas
ChEBI
cyanido
cyano
-C#N
-CN
CYANIDE GROUP
NC-
carbonitrile group
cyano group
cyanido
IUPAC
cyano
IUPAC
-C#N
IUPAC
-CN
IUPAC
CYANIDE GROUP
PDBeChem
NC-
IUPAC
carbonitrile group
ChEBI
gypsum
Gips
aljez
gypse
gypsite
yeso
gypsum
gypsum
ChemIDplus
Gips
ChemIDplus
aljez
ChEBI
gypse
ChEBI
gypsite
ChemIDplus
yeso
ChEBI
hydrogen
1H
H
Wasserstoff
hidrogeno
hydrogen
hydrogene
hydrogen atom
hydrogen
IUPAC
1H
IUPAC
H
IUPAC
Wasserstoff
ChEBI
hidrogeno
ChEBI
hydrogen
ChEBI
hydrogene
ChEBI
A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups.
organic amino compounds
organic amino compound
organic amino compounds
ChEBI
onium compound
Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families.
onium cations
onium cations
onium ion
onium ions
onium cation
onium cations
IUPAC
onium cations
ChEBI
onium ion
ChEBI
onium ions
ChEBI
chloranium
chloronium
H2Cl(+)
[ClH2](+)
chloronium
chloranium
IUPAC
chloronium
IUPAC
H2Cl(+)
IUPAC
[ClH2](+)
IUPAC
organic nitrogen anions
organic nitrogen anion
organic nitrogen anions
ChEBI
A substance used either in the prevention or facilitation of pregnancy.
reproductive control agent
reproductive control drugs
reproductive control drug
reproductive control agent
ChEBI
reproductive control drugs
ChEBI
Any molecular entity that contains carbon.
organic compounds
organic entity
organic molecular entities
organic molecular entity
organic compounds
ChEBI
organic entity
ChEBI
organic molecular entities
ChEBI
A role played by a chemical compound to induce direct or indirect DNA damage. Such damage can potentially lead to the formation of a malignant tumour, but DNA damage does not lead inevitably to the creation of cancerous cells.
genotoxic agent
genotoxic agents
genotoxins
genotoxin
genotoxic agent
ChEBI
genotoxic agents
ChEBI
genotoxins
ChEBI
A chemical compound, or part thereof, which causes the onset of an allergic reaction by interacting with any of the molecular pathways involved in an allergy.
alergeno
allergene
allergenic agent
allergen
alergeno
ChEBI
allergene
ChEBI
allergenic agent
ChEBI
A role is particular behaviour which a material entity may exhibit.
role
A poison that interferes with the functions of the nervous system.
agente neurotoxico
nerve poison
nerve poisons
neurotoxic agent
neurotoxic agents
neurotoxicant
neurotoxins
neurotoxin
agente neurotoxico
ChEBI
nerve poison
ChEBI
nerve poisons
ChEBI
neurotoxic agent
ChEBI
neurotoxic agents
ChEBI
neurotoxicant
ChEBI
neurotoxins
ChEBI
nitrate salts
nitrate salt
nitrate salts
ChEBI
inorganic nitrate salts
inorganic nitrates
inorganic nitrate salt
inorganic nitrate salts
ChEBI
inorganic nitrates
ChEBI
A role played by the molecular entity or part thereof within a chemical context.
chemical role
Nitrogenous compounds
nitrogen compounds
nitrogen molecular entities
nitrogen molecular entity
Nitrogenous compounds
KEGG_COMPOUND
nitrogen compounds
ChEBI
nitrogen molecular entities
ChEBI
Sulfate salts where the cation is a metal ion.
metal sulfates
metal sulfate
metal sulfates
ChEBI
Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s).
organodiyl groups
organodiyl group
organodiyl groups
ChEBI
organic divalent group
organic univalent group
A biological role played by the molecular entity or part thereof within a biochemical context.
biochemical role
biophysical role
A role played by the molecular entity or part thereof which causes the development of a pathological process.
etiopathogenetic agent
etiopathogenetic role
aetiopathogenetic role
etiopathogenetic agent
ChEBI
etiopathogenetic role
ChEBI
A biological role which describes how a drug interacts within a biological system and how the interactions affect its medicinal properties.
pharmacological role
physiological role
Any molecule or ion capable of binding to a central metal atom to form coordination complexes.
ligands
ligand
ligands
ChEBI
Any substance introduced into a living organism with therapeutic or diagnostic purpose.
farmaco
medicament
pharmaceuticals
pharmaceutical
farmaco
ChEBI
medicament
ChEBI
pharmaceuticals
ChEBI
inorganic hydroxides
inorganic hydroxy compound
inorganic hydroxides
ChEBI
A polymerized phosphorus oxoacid of general formula HO[PO2OH]nH formed by condensation of orthophosphoric acid molecules and containing a backbone chain consisting of alternating P and O atoms covalently bonded together.
Condensed phosphoric acid
Phospholeum
Polyphosphoric acids
Superphosphoric acid
poly(phosphoric acid)
polyphosphoric acid
Condensed phosphoric acid
ChemIDplus
Phospholeum
ChemIDplus
Polyphosphoric acids
ChemIDplus
Superphosphoric acid
ChemIDplus
poly(phosphoric acid)
ChEBI
The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds.
antigenic determinant
epitope function
epitope role
epitope
antigenic determinant
ChEBI
epitope function
ChEBI
epitope role
ChEBI
A cyclic compound having as ring members atoms of at least two different elements.
Heterocyclic compound
compuesto heterociclico
compuestos heterociclicos
heterocycle
heterocyclic compounds
heterocyclic compound
Heterocyclic compound
KEGG_COMPOUND
compuesto heterociclico
IUPAC
compuestos heterociclicos
IUPAC
heterocycle
ChEBI
heterocyclic compounds
ChEBI
An organic anion arising from deprotonation of a cyclic tetrapyrrole compound.
cyclic tetrapyrrole anions
cyclic tetrapyrrole anion
cyclic tetrapyrrole anions
ChEBI
Compounds containing one or more phosphoric acid units.
phosphoric acids
A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons.
nucleophile
nucleophiles
nucleophilic reagents
nucleophilic reagent
nucleophile
ChEBI
nucleophiles
ChEBI
nucleophilic reagents
ChEBI
A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.
Chemische Substanz
chemical substance
Chemische Substanz
ChEBI
A mixture is a chemical substance composed of multiple molecules, at least two of which are of a different kind.
Mischung
mixture
Mischung
ChEBI
A metal cation with a valence of two.
a divalent metal cation
divalent metal cation
a divalent metal cation
UniProt
An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one.
a monovalent cation
monovalent inorganic cation
a monovalent cation
UniProt
A molecular messenger in which the molecule is specifically involved in transmitting information between cells. Such molecules are released from the cell sending the signal, cross over the gap between cells by diffusion, and interact with specific receptors in another cell, triggering a response in that cell by activating a series of enzyme controlled reactions which lead to changes inside the cell.
signal molecule
signal molecules
signaling molecule
signaling molecules
signalling molecules
signalling molecule
signal molecule
ChEBI
signal molecules
ChEBI
signaling molecule
ChEBI
signaling molecules
ChEBI
signalling molecules
ChEBI
A family of nitrogen molecular entities which are highly reactive and derived from nitric oxide (.NO) and superoxide (O2.(-)) produced via the enzymatic activity of inducible nitric oxide synthase 2 (NOS2) and NADPH oxidase respectively.
RNI
RNS
reactive nitrogen species
RNI
SUBMITTER
RNS
SUBMITTER
An inorganic sulfate salt obtained by reaction of sulfuric acid with two equivalents of ammonia. A high-melting (decomposes above 280degreeC) white solid which is very soluble in water (70.6 g/100 g water at 0degreeC; 103.8 g/100 g water at 100degreeC), it is widely used as a fertilizer for alkaline soils.
diazanium sulfate
(NH4)2SO4
ammonium sulfate (2:1)
ammonium sulphate
diammonium sulfate
mascagnite
sulfuric acid ammonium salt (1:2)
sulfuric acid, diammonium salt
sulphate of ammonia
ammonium sulfate
diazanium sulfate
IUPAC
(NH4)2SO4
ChEBI
ammonium sulfate (2:1)
ChemIDplus
ammonium sulphate
SUBMITTER
diammonium sulfate
IUPAC
mascagnite
ChemIDplus
sulfuric acid ammonium salt (1:2)
ChemIDplus
sulfuric acid, diammonium salt
ChemIDplus
sulphate of ammonia
ChEBI
The ammonium salt of phosphoric acid (molar ratio 1:1).
ammonium dihydrogen phosphate
Ammonium acid phosphate
Ammonium biphosphate
Ammonium diacid phosphate
Ammonium dihydrogen orthophosphate
Ammonium dihydrophosphate
Ammonium monobasic phosphate
Ammonium monophosphate
Ammonium orthophosphate dihydrogen
Dihydrogen ammonium phosphate
Monoammonium acid phosphate
Monoammonium dihydrogen orthophosphate
Monoammonium dihydrogen phosphate
Monoammonium hydrogen phosphate
Monoammonium orthophosphate
Monoammonium phosphate
Monobasic ammonium phosphate
Phosphoric acid, monoammonium salt
Primary ammonium phosphate
monoammonium phosphate
ammonium dihydrogen phosphate
ammonium dihydrogen phosphate
IUPAC
Ammonium acid phosphate
ChemIDplus
Ammonium biphosphate
ChemIDplus
Ammonium diacid phosphate
ChemIDplus
Ammonium dihydrogen orthophosphate
ChemIDplus
Ammonium dihydrophosphate
ChemIDplus
Ammonium monobasic phosphate
ChemIDplus
Ammonium monophosphate
ChemIDplus
Ammonium orthophosphate dihydrogen
ChemIDplus
Dihydrogen ammonium phosphate
ChemIDplus
Monoammonium acid phosphate
ChemIDplus
Monoammonium dihydrogen orthophosphate
ChemIDplus
Monoammonium dihydrogen phosphate
ChemIDplus
Monoammonium hydrogen phosphate
ChemIDplus
Monoammonium orthophosphate
ChemIDplus
Monoammonium phosphate
ChemIDplus
Monobasic ammonium phosphate
ChemIDplus
Phosphoric acid, monoammonium salt
ChemIDplus
Primary ammonium phosphate
ChemIDplus
monoammonium phosphate
SUBMITTER
The inorganic nitrate salt of sodium.
sodium nitrate
sodium trioxidonitrate(1-)
Chile saltpeter
Cubic niter
Niter
Nitrate de sodium
Nitrate of soda
Nitric acid monosodium salt
Nitric acid sodium salt (1:1)
Nitric acid, sodium salt
Sodium saltpeter
Sodium(I) nitrate (1:1)
sodium nitrate
sodium nitrate
IUPAC
sodium trioxidonitrate(1-)
IUPAC
Chile saltpeter
SUBMITTER
Cubic niter
ChemIDplus
Niter
ChemIDplus
Nitrate de sodium
ChemIDplus
Nitrate of soda
ChemIDplus
Nitrate of soda
SUBMITTER
Nitric acid monosodium salt
ChemIDplus
Nitric acid sodium salt (1:1)
ChemIDplus
Nitric acid, sodium salt
ChemIDplus
Sodium saltpeter
ChemIDplus
Sodium(I) nitrate (1:1)
ChemIDplus
A potassium salt in which dihydrogen phosphate(1-) is the counterion.
Potassium dihydrogen phosphate
potassium dihydrogen phosphate
MKP
Monopotassium dihydrogen phosphate
Monopotassium monophosphate
Monopotassium orthophosphate
Monopotassium phosphate
Orthophosphoric acid, monopotassium salt
Phosphoric acid, monopotassium salt
Phosphoric acid, potassium salt (1:1)
Potassium acid phosphate
Potassium dihydrogen orthophosphate
Potassium phosphate
Potassium phosphate monobasic
Sorensen's potassium phosphate
potassium dihydrogen phosphate
Potassium dihydrogen phosphate
ChemIDplus
potassium dihydrogen phosphate
IUPAC
MKP
ChEBI
Monopotassium dihydrogen phosphate
ChemIDplus
Monopotassium monophosphate
ChemIDplus
Monopotassium orthophosphate
ChemIDplus
Monopotassium phosphate
ChemIDplus
Orthophosphoric acid, monopotassium salt
ChemIDplus
Phosphoric acid, monopotassium salt
ChemIDplus
Phosphoric acid, potassium salt (1:1)
ChemIDplus
Potassium acid phosphate
ChemIDplus
Potassium dihydrogen orthophosphate
ChemIDplus
Potassium phosphate
ChemIDplus
Potassium phosphate monobasic
SUBMITTER
Sorensen's potassium phosphate
ChemIDplus
The ammonium salt of nitric acid.
ammonium nitrate
Ammonium nitricum
Ammonium saltpeter
Ammonium(I) nitrate (1:1)
Nitrate d'ammonium
Nitrate of ammonia
Nitrato amonico
Nitric acid ammonium salt (1:1)
Nitric acid, ammonium salt
Norway saltpeter
ammonium nitrate
ammonium nitrate
IUPAC
Ammonium nitricum
ChemIDplus
Ammonium saltpeter
ChemIDplus
Ammonium(I) nitrate (1:1)
ChemIDplus
Nitrate d'ammonium
ChemIDplus
Nitrate of ammonia
ChemIDplus
Nitrato amonico
ChemIDplus
Nitric acid ammonium salt (1:1)
ChemIDplus
Nitric acid, ammonium salt
ChemIDplus
Norway saltpeter
ChemIDplus
The inorganic nitrate salt of potassium.
potassium nitrate
Kaliumnitrat
Niter
Nitrate of potash
Nitre
Nitric acid, potassium salt
Salt peter
Saltpeter
saltpetre
potassium nitrate
potassium nitrate
IUPAC
Kaliumnitrat
ChemIDplus
Niter
ChemIDplus
Nitrate of potash
ChemIDplus
Nitre
ChemIDplus
Nitric acid, potassium salt
ChemIDplus
Salt peter
ChemIDplus
Saltpeter
ChemIDplus
saltpetre
SUBMITTER
The chemical role played by a substance that stabilizes an emulsion by increasing its kinetic stability.
emulgent
emulgents
emulsifiers
emulsifier
emulgent
ChEBI
emulgents
ChEBI
emulsifiers
ChEBI
A food additive used to form or maintain a uniform emulsion of two (or more) phases in a food.
food emulsifiers
food emulsifier
food emulsifiers
ChEBI
An inorganic phosphate, being the diammonium salt of phosphoric acid. The commercially available fertilizer has an analysis of 18-46-0 (N-P2O5-K2O) and is marketed under the name diammonium phosphate or DAP.
Diammonium hydrogen phosphate
diammonium hydrogen phosphate
diazanium hydrogen phosphate
Ammonium monohydrogen orthophosphate
Ammonium orthophosphate dibasic
Ammonium phosphate
Ammonium phosphate, dibasic
Diammonium acid phosphate
Diammonium hydrogen orthophosphate
Diammonium monohydrogen phosphate
Diammonium orthophosphate
Dibasic ammonium phosphate
Hydrogen diammonium phosphate
Phosphoric acid, diammonium salt
Secondary ammonium phosphate
ammonium monohydrogen phosphate
ammonium phosphate dibasic
diammonium phosphate
diammonium hydrogen phosphate
Diammonium hydrogen phosphate
ChemIDplus
diammonium hydrogen phosphate
IUPAC
diazanium hydrogen phosphate
IUPAC
Ammonium monohydrogen orthophosphate
ChemIDplus
Ammonium orthophosphate dibasic
ChemIDplus
Ammonium phosphate
ChemIDplus
Ammonium phosphate, dibasic
ChemIDplus
Diammonium acid phosphate
ChemIDplus
Diammonium hydrogen orthophosphate
ChemIDplus
Diammonium monohydrogen phosphate
ChemIDplus
Diammonium orthophosphate
ChemIDplus
Dibasic ammonium phosphate
ChemIDplus
Hydrogen diammonium phosphate
ChemIDplus
Phosphoric acid, diammonium salt
ChemIDplus
Secondary ammonium phosphate
ChemIDplus
ammonium monohydrogen phosphate
SUBMITTER
ammonium phosphate dibasic
SUBMITTER
diammonium phosphate
SUBMITTER
Any zinc ion that is positively charged.
zinc cations
zinc cation
zinc cations
ChEBI
The element or compound in a reduction-oxidation (redox) reaction that donates an electron to another species.
reducer
reducers
reducing agents
reductant
reductants
reducing agent
reducer
ChEBI
reducers
ChEBI
reducing agents
ChEBI
reductant
ChEBI
reductants
ChEBI
A substance that removes electrons from another reactant in a redox reaction.
oxidant
oxidants
oxidiser
oxidisers
oxidising agents
oxidizer
oxidizers
oxidizing agent
oxidizing agents
oxidising agent
oxidant
ChEBI
oxidants
ChEBI
oxidiser
ChEBI
oxidisers
ChEBI
oxidising agents
ChEBI
oxidizer
ChEBI
oxidizers
ChEBI
oxidizing agent
ChEBI
oxidizing agents
ChEBI
A substance capable of undergoing rapid and highly exothermic decomposition.
explosive compound
explosive compounds
explosive material
explosives
explosives chemical
explosives chemicals
explosive
explosive compound
ChEBI
explosive compounds
ChEBI
explosive material
ChEBI
explosives
ChEBI
explosives chemical
ChEBI
explosives chemicals
ChEBI
Any substance which is added to food to preserve or enhance its flavour and/or appearance.
food additives
food additive
food additives
ChEBI
A food additive that is used to change or otherwise control the acidity or alkalinity of foods. They may be acids, bases, neutralising agents or buffering agents.
acidity regulator
acidity regulators
food acidity regulators
pH control agent
pH control agents
food acidity regulator
acidity regulator
ChEBI
acidity regulators
ChEBI
food acidity regulators
ChEBI
pH control agent
ChEBI
pH control agents
ChEBI
Inorganic nitrate salt of calcium.
calcium dinitrate
Calcium saltpeter
Calcium(II) nitrate (1:2)
Lime nitrate
Lime saltpeter
Nitric acid, calcium salt
Norge saltpeter
Norway saltpeter
Norwegian saltpeter
Saltpeter
anhydrous calcium nitrate
calcium nitrate
calcium dinitrate
IUPAC
Calcium saltpeter
ChemIDplus
Calcium(II) nitrate (1:2)
ChemIDplus
Lime nitrate
ChemIDplus
Lime saltpeter
ChemIDplus
Nitric acid, calcium salt
ChemIDplus
Norge saltpeter
ChemIDplus
Norway saltpeter
ChemIDplus
Norwegian saltpeter
ChemIDplus
Saltpeter
ChemIDplus
anhydrous calcium nitrate
ChEBI
The calcium salt of cyanamide, formed when calcium carbide reacts with nitrogen
calcium methanediylidenediazanide
Cyanamide calcique
Cyanamide, calcium salt (1:1)
Lime nitrogen
Lime-nitrogen
Nitrogen lime
calcium carbimide
carbimida calcica
carbimide calcique
methanediimine, calcium salt (1:1)
calcium cyanamide
calcium methanediylidenediazanide
IUPAC
Cyanamide calcique
ChemIDplus
Cyanamide, calcium salt (1:1)
ChemIDplus
Lime nitrogen
ChemIDplus
Lime-nitrogen
ChemIDplus
Nitrogen lime
ChemIDplus
calcium carbimide
ChemIDplus
carbimida calcica
ChemIDplus
carbimide calcique
ChemIDplus
methanediimine, calcium salt (1:1)
ChEBI
An organic nitrogen anion formed from cyanamide by loss of its two protons.
methanediylidenediazanide
cyanamide(2-)
methanediylidenediazanide
IUPAC
A polyphenylpropanoid derived from three monolignol monomers: trans-p-coumaryl alcohol, coniferol and trans-sinapyl alcohol. There is extensive cross-linking and no defined primary structure.
lignin
A food additive which is added to flour or dough to improve baking quality and/or colour.
flour treatment agent
dough improver
dough improvers
improving agent
improving agents
flour treatment agent
flour treatment agent
ChEBI
dough improver
ChEBI
dough improvers
ChEBI
improving agent
ChEBI
improving agents
ChEBI
An inorganic cation with a valency of two.
divalent inorganic cation
An organic molecular entity containing a single carbon atom (C1).
one-carbon compounds
one-carbon compound
one-carbon compounds
ChEBI
Any organic molecular entity that is acidic and contains carbon in covalent linkage.
organic acids
organic acid
organic acids
ChEBI
The inorganic nitrate salt of magnesium.
magnesium dinitrate
magnesium nitrate
magnesium dinitrate
IUPAC
Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism.
poisonous agent
poisonous agents
poisonous substance
poisonous substances
poisons
toxic agent
toxic agents
toxic substance
toxic substances
poison
poisonous agent
ChEBI
poisonous agents
ChEBI
poisonous substance
ChEBI
poisonous substances
ChEBI
poisons
ChEBI
toxic agent
ChEBI
toxic agents
ChEBI
toxic substance
ChEBI
toxic substances
ChEBI
Substances which are added to food in order to prevent decomposition caused by microbial growth or by undesirable chemical changes.
food preservatives
food preservative
food preservatives
ChEBI
Any substance which is used to neutralise stomach acidity.
antacids
antacid
antacids
ChEBI
Any compound used to suppress premature labour and immature birth by suppressing uterine contractions.
anti-contraction drug
anti-contraction drugs
anti-contraction medication
anti-contraction medications
labour repressant
labour repressants
tocolytic
tocolytic agents
tocolytic drug
tocolytic drugs
tocolytics
tocolytic agent
anti-contraction drug
ChEBI
anti-contraction drugs
ChEBI
anti-contraction medication
ChEBI
anti-contraction medications
ChEBI
labour repressant
ChEBI
labour repressants
ChEBI
tocolytic
ChEBI
tocolytic agents
ChEBI
tocolytic drug
ChEBI
tocolytic drugs
ChEBI
tocolytics
ChEBI
A chemosterilant intended to sterilize insects.
insect chemosterilant
insect chemosterilants
insect sterilants
insect sterilant
insect chemosterilant
ChEBI
insect chemosterilants
ChEBI
insect sterilants
ChEBI
Any monocyclic heteroarene consisting of a five-membered ring containing nitrogen. Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen.
azoles
azole
azoles
ChEBI
An insecticide that acts as a repellent to insects.
insect repellents
insect repellent
insect repellents
ChEBI
Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.
organic compound
organic compounds
organic molecules
organic molecule
organic compound
ChEBI
organic compounds
ChEBI
organic molecules
ChEBI
A compound that causes the contraction of body tissues, typically used to reduce bleeding from minor abrasions.
adstringent
adstringents
astringents
astringent
adstringent
ChEBI
adstringents
ChEBI
astringents
ChEBI
A chemical additive used to toughen or harden a polymer material by cross-linking of polymer chains.
curing agents
vulcanization agent
vulcanization agents
vulcanizing agent
vulcanizing agents
curing agent
curing agents
ChEBI
vulcanization agent
ChEBI
vulcanization agents
ChEBI
vulcanizing agent
ChEBI
vulcanizing agents
ChEBI
Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms.
eukaryotic metabolites
eukaryotic metabolite
eukaryotic metabolites
ChEBI
Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals.
animal metabolites
animal metabolite
animal metabolites
ChEBI
Any animal metabolite produced during a metabolic reaction in mammals.
mammalian metabolites
mammalian metabolite
mammalian metabolites
ChEBI
Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
Mus musculus metabolite
Mus musculus metabolites
mouse metabolites
mouse metabolite
Mus musculus metabolite
ChEBI
Mus musculus metabolites
ChEBI
mouse metabolites
ChEBI
Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae).
S. cerevisiae metabolite
S. cerevisiae metabolites
S. cerevisiae secondary metabolite
S. cerevisiae secondary metabolites
Saccharomyces cerevisiae metabolites
Saccharomyces cerevisiae secondary metabolites
baker's yeast metabolite
baker's yeast metabolites
baker's yeast secondary metabolite
baker's yeast secondary metabolites
Saccharomyces cerevisiae metabolite
S. cerevisiae metabolite
ChEBI
S. cerevisiae metabolites
ChEBI
S. cerevisiae secondary metabolite
ChEBI
S. cerevisiae secondary metabolites
ChEBI
Saccharomyces cerevisiae metabolites
ChEBI
Saccharomyces cerevisiae secondary metabolites
ChEBI
baker's yeast metabolite
ChEBI
baker's yeast metabolites
ChEBI
baker's yeast secondary metabolite
ChEBI
baker's yeast secondary metabolites
ChEBI
Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea.
prokaryotic metabolites
prokaryotic metabolite
prokaryotic metabolites
ChEBI
A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'.
greenhouse gases
greenhouse gas
greenhouse gases
ChEBI
A compressed gas or liquid with a boiling point lower than room temperature which to used to propel and dispense liquids such as deodorants, insecticides, paints, etc. from aerosol cans.
propellants
propellant
propellants
ChEBI
An enzyme inhibitor which interferes with the action of an oxidoreductase (EC 1.*.*.*).
EC 1.* (oxidoreductase) inhibitors
EC 1.* inhibitor
EC 1.* inhibitors
oxidoreductase (EC 1.*) inhibitor
oxidoreductase (EC 1.*) inhibitors
oxidoreductase inhibitor
oxidoreductase inhibitors
EC 1.* (oxidoreductase) inhibitor
EC 1.* (oxidoreductase) inhibitors
ChEBI
EC 1.* inhibitor
ChEBI
EC 1.* inhibitors
ChEBI
oxidoreductase (EC 1.*) inhibitor
ChEBI
oxidoreductase (EC 1.*) inhibitors
ChEBI
oxidoreductase inhibitor
ChEBI
oxidoreductase inhibitors
ChEBI
An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on the aldehyde or oxo group of donors (EC 1.2.*.*).
EC 1.2.* (oxidoreductase acting on donor aldehyde or oxo group) inhibitor
EC 1.2.* (oxidoreductase acting on donor aldehyde or oxo group) inhibitors
EC 1.2.* (oxidoreductase acting on donor aldehyde/oxo group) inhibitors
EC 1.2.* inhibitor
EC 1.2.* inhibitors
inhibitor of oxidoreductase acting on aldehyde or oxo group of donor
inhibitor of oxidoreductase acting on aldehyde or oxo group of donors
inhibitor of oxidoreductase acting on aldehyde/oxo group of donor
inhibitor of oxidoreductase acting on aldehyde/oxo group of donors
inhibitors of oxidoreductase acting on aldehyde or oxo group of donor
inhibitors of oxidoreductase acting on aldehyde or oxo group of donors
inhibitors of oxidoreductase acting on aldehyde/oxo group of donor
inhibitors of oxidoreductase acting on aldehyde/oxo group of donors
oxidoreductase acting on donor aldehyde or oxo group (EC 1.2.*) inhibitor
oxidoreductase acting on donor aldehyde or oxo group (EC 1.2.*) inhibitors
oxidoreductase acting on donor aldehyde or oxo group inhibitor
oxidoreductase acting on donor aldehyde or oxo group inhibitors
oxidoreductase acting on donor aldehyde/oxo group (EC 1.2.*) inhibitor
oxidoreductase acting on donor aldehyde/oxo group (EC 1.2.*) inhibitors
oxidoreductase acting on donor aldehyde/oxo group inhibitor
oxidoreductase acting on donor aldehyde/oxo group inhibitors
EC 1.2.* (oxidoreductase acting on donor aldehyde/oxo group) inhibitor
EC 1.2.* (oxidoreductase acting on donor aldehyde or oxo group) inhibitor
ChEBI
EC 1.2.* (oxidoreductase acting on donor aldehyde or oxo group) inhibitors
ChEBI
EC 1.2.* (oxidoreductase acting on donor aldehyde/oxo group) inhibitors
ChEBI
EC 1.2.* inhibitor
ChEBI
EC 1.2.* inhibitors
ChEBI
inhibitor of oxidoreductase acting on aldehyde or oxo group of donor
ChEBI
inhibitor of oxidoreductase acting on aldehyde or oxo group of donors
ChEBI
inhibitor of oxidoreductase acting on aldehyde/oxo group of donor
ChEBI
inhibitor of oxidoreductase acting on aldehyde/oxo group of donors
ChEBI
inhibitors of oxidoreductase acting on aldehyde or oxo group of donor
ChEBI
inhibitors of oxidoreductase acting on aldehyde or oxo group of donors
ChEBI
inhibitors of oxidoreductase acting on aldehyde/oxo group of donor
ChEBI
inhibitors of oxidoreductase acting on aldehyde/oxo group of donors
ChEBI
oxidoreductase acting on donor aldehyde or oxo group (EC 1.2.*) inhibitor
ChEBI
oxidoreductase acting on donor aldehyde or oxo group (EC 1.2.*) inhibitors
ChEBI
oxidoreductase acting on donor aldehyde or oxo group inhibitor
ChEBI
oxidoreductase acting on donor aldehyde or oxo group inhibitors
ChEBI
oxidoreductase acting on donor aldehyde/oxo group (EC 1.2.*) inhibitor
ChEBI
oxidoreductase acting on donor aldehyde/oxo group (EC 1.2.*) inhibitors
ChEBI
oxidoreductase acting on donor aldehyde/oxo group inhibitor
ChEBI
oxidoreductase acting on donor aldehyde/oxo group inhibitors
ChEBI
An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on a heme group of donors (EC 1.9.*.*).
EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitor
EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitors
EC 1.9.* (oxidoreductase acting on donor heme group) inhibitors
EC 1.9.* inhibitor
EC 1.9.* inhibitors
oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitor
oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitors
EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitor
ChEBI
EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitors
ChEBI
EC 1.9.* (oxidoreductase acting on donor heme group) inhibitors
ChEBI
EC 1.9.* inhibitor
ChEBI
EC 1.9.* inhibitors
ChEBI
oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitor
ChEBI
oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitors
ChEBI
Any enzyme inhibitor that interferes with the action of a hydrolase (EC 3.*.*.*).
EC 3.* (hydrolase) inhibitors
EC 3.* inhibitor
EC 3.* inhibitors
EC 3.*.*.* inhibitor
EC 3.*.*.* inhibitors
hydrolase (EC 3.*) inhibitor
hydrolase (EC 3.*) inhibitors
hydrolase inhibitor
hydrolase inhibitors
EC 3.* (hydrolase) inhibitor
EC 3.* (hydrolase) inhibitors
ChEBI
EC 3.* inhibitor
ChEBI
EC 3.* inhibitors
ChEBI
EC 3.*.*.* inhibitor
ChEBI
EC 3.*.*.* inhibitors
ChEBI
hydrolase (EC 3.*) inhibitor
ChEBI
hydrolase (EC 3.*) inhibitors
ChEBI
hydrolase inhibitor
ChEBI
hydrolase inhibitors
ChEBI
A hydrolase inhibitor that interferes with the action of any ester hydrolase (EC 3.1.*.*).
EC 3.1.* (ester hydrolase) inhibitors
EC 3.1.* inhibitor
EC 3.1.* inhibitors
ester hydrolase (EC 3.1.*) inhibitor
ester hydrolase (EC 3.1.*) inhibitors
ester hydrolase inhibitor
ester hydrolase inhibitors
EC 3.1.* (ester hydrolase) inhibitor
EC 3.1.* (ester hydrolase) inhibitors
ChEBI
EC 3.1.* inhibitor
ChEBI
EC 3.1.* inhibitors
ChEBI
ester hydrolase (EC 3.1.*) inhibitor
ChEBI
ester hydrolase (EC 3.1.*) inhibitors
ChEBI
ester hydrolase inhibitor
ChEBI
ester hydrolase inhibitors
ChEBI
Any hydrolase inhibitor that interferes with the action of a hydrolase acting on C-N bonds, other than peptide bonds (EC 3.5.*.*).
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
EC 3.5.* inhibitor
EC 3.5.* inhibitors
EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
ChEBI
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
ChEBI
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
ChEBI
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
ChEBI
EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
ChEBI
EC 3.5.* inhibitor
ChEBI
EC 3.5.* inhibitors
ChEBI
An EC 3.1.* (ester hydrolase) inhibitor that interferes with the action of any phosphoric monoester hydrolase (EC 3.1.3.*).
EC 3.1.3.* (phosphoric monoester hydrolase) inhibitors
EC 3.1.3.* inhibitor
EC 3.1.3.* inhibitors
inhibitor of phosphoric monoester hydrolase
inhibitor of phosphoric monoester hydrolase (EC 3.1.3.*)
inhibitors of phosphoric monoester hydrolase
inhibitors of phosphoric monoester hydrolase (EC 3.1.3.*)
phosphoric monoester hydrolase (EC 3.1.3.*) inhibitor
phosphoric monoester hydrolase (EC 3.1.3.*) inhibitors
phosphoric monoester hydrolase inhibitor
phosphoric monoester hydrolase inhibitors
EC 3.1.3.* (phosphoric monoester hydrolase) inhibitor
EC 3.1.3.* (phosphoric monoester hydrolase) inhibitors
ChEBI
EC 3.1.3.* inhibitor
ChEBI
EC 3.1.3.* inhibitors
ChEBI
inhibitor of phosphoric monoester hydrolase
ChEBI
inhibitor of phosphoric monoester hydrolase (EC 3.1.3.*)
ChEBI
inhibitors of phosphoric monoester hydrolase
ChEBI
inhibitors of phosphoric monoester hydrolase (EC 3.1.3.*)
ChEBI
phosphoric monoester hydrolase (EC 3.1.3.*) inhibitor
ChEBI
phosphoric monoester hydrolase (EC 3.1.3.*) inhibitors
ChEBI
phosphoric monoester hydrolase inhibitor
ChEBI
phosphoric monoester hydrolase inhibitors
ChEBI
An EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor that interferes with the action of any non-peptide linear amide C-N hydrolase (EC 3.5.1.*).
EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
EC 3.5.1.* inhibitor
EC 3.5.1.* inhibitors
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
ChEBI
EC 3.5.1.* inhibitor
ChEBI
EC 3.5.1.* inhibitors
ChEBI
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
ChEBI
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
ChEBI
An EC 1.2.* (oxidoreductase acting on donor aldehyde/oxo group) inhibitor that interferes with the action of any such enzyme using NAD(+) or NADP(+) as acceptor (EC 1.2.1.*).
EC 1.2.1.* (oxidoreductase acting on donor aldehyde/oxo group with NAD(+) or NADP(+) as acceptor) inhibitors
EC 1.2.1.* inhibitor
EC 1.2.1.* inhibitors
oxidoreductase acting on donor aldehyde/oxo group with NAD(+) or NADP(+) as acceptor (EC 1.2.1.*) inhibitor
oxidoreductase acting on donor aldehyde/oxo group with NAD(+) or NADP(+) as acceptor (EC 1.2.1.*) inhibitors
EC 1.2.1.* (oxidoreductase acting on donor aldehyde/oxo group with NAD(+) or NADP(+) as acceptor) inhibitor
EC 1.2.1.* (oxidoreductase acting on donor aldehyde/oxo group with NAD(+) or NADP(+) as acceptor) inhibitors
ChEBI
EC 1.2.1.* inhibitor
ChEBI
EC 1.2.1.* inhibitors
ChEBI
oxidoreductase acting on donor aldehyde/oxo group with NAD(+) or NADP(+) as acceptor (EC 1.2.1.*) inhibitor
ChEBI
oxidoreductase acting on donor aldehyde/oxo group with NAD(+) or NADP(+) as acceptor (EC 1.2.1.*) inhibitors
ChEBI
An EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor that interferes with the action of any such enzyme using oxygen as acceptor (EC 1.9.3.*).
EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitors
EC 1.9.3.* inhibitor
EC 1.9.3.* inhibitors
oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitor
oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitors
EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor
EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitors
ChEBI
EC 1.9.3.* inhibitor
ChEBI
EC 1.9.3.* inhibitors
ChEBI
oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitor
ChEBI
oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitors
ChEBI
An enzyme inhibitor that interferes with one or more steps in a metabolic pathway.
metabolic pathway inhibitor
metabolic pathway inhibitors
pathway inhibitors
pathway inhibitor
metabolic pathway inhibitor
ChEBI
metabolic pathway inhibitors
ChEBI
pathway inhibitors
ChEBI
Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds.
fungal metabolites
fungal metabolite
fungal metabolites
ChEBI
Any prokaryotic metabolite produced during a metabolic reaction in bacteria.
bacterial metabolite
Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
E.coli metabolite
E.coli metabolites
Escherichia coli metabolites
Escherichia coli metabolite
E.coli metabolite
ChEBI
E.coli metabolites
ChEBI
Escherichia coli metabolites
ChEBI
A food additive that imparts colour to food. In European countries, E-numbers for permitted food colours are from E 100 to E 199, divided into yellows (E 100-109), oranges (E 110-119), reds (E 120-129), blues and violets (E 130-139), greens (E 140-149), browns and blacks (E 150-159), and others (E 160-199).
food coloring
food colorings
food colourings
food colouring
food coloring
ChEBI
food colorings
ChEBI
food colourings
ChEBI
A calcium salt composed of calcium and phosphate/diphosphate ions; present in milk and used for the mineralisation of calcified tissues.
calcium phosphate
Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
H. sapiens metabolite
H. sapiens metabolites
Homo sapiens metabolite
Homo sapiens metabolites
human metabolite
H. sapiens metabolite
ChEBI
H. sapiens metabolites
ChEBI
Homo sapiens metabolite
ChEBI
Homo sapiens metabolites
ChEBI
An inorganic sodium salt having selenate as the counterion.
disodium selenate
Natriumseleniat
Selenic acid, disodium salt
Sodium selenium oxide
sodium selenate
disodium selenate
IUPAC
Natriumseleniat
ChemIDplus
Selenic acid, disodium salt
ChemIDplus
Sodium selenium oxide
ChemIDplus
An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of amidase (EC 3.5.1.4).
EC 3.5.1.4 (amidase) inhibitors
EC 3.5.1.4 inhibitor
EC 3.5.1.4 inhibitors
N-acetylaminohydrolase inhibitor
N-acetylaminohydrolase inhibitors
acylamidase inhibitor
acylamidase inhibitors
acylamide amidohydrolase inhibitor
acylamide amidohydrolase inhibitors
amidase (EC 3.5.1.4) inhibitor
amidase (EC 3.5.1.4) inhibitors
amidase inhibitor
amidase inhibitors
amidohydrolase inhibitor
amidohydrolase inhibitors
deaminase inhibitor
deaminase inhibitors
fatty acylamidase inhibitor
fatty acylamidase inhibitors
EC 3.5.1.4 (amidase) inhibitor
EC 3.5.1.4 (amidase) inhibitors
ChEBI
EC 3.5.1.4 inhibitor
ChEBI
EC 3.5.1.4 inhibitors
ChEBI
N-acetylaminohydrolase inhibitor
ChEBI
N-acetylaminohydrolase inhibitors
ChEBI
acylamidase inhibitor
ChEBI
acylamidase inhibitors
ChEBI
acylamide amidohydrolase inhibitor
ChEBI
acylamide amidohydrolase inhibitors
ChEBI
amidase (EC 3.5.1.4) inhibitor
ChEBI
amidase (EC 3.5.1.4) inhibitors
ChEBI
amidase inhibitor
ChEBI
amidase inhibitors
ChEBI
amidohydrolase inhibitor
ChEBI
amidohydrolase inhibitors
ChEBI
deaminase inhibitor
ChEBI
deaminase inhibitors
ChEBI
fatty acylamidase inhibitor
ChEBI
fatty acylamidase inhibitors
ChEBI
A food additive that is used to make or keep fruit or vegetable tissues firm and crisp. or which interacts with gelling agents such as pectin to produce or strengthen a gel.
firming agent
firming agents
food firming agents
food firming agent
firming agent
ChEBI
firming agents
ChEBI
food firming agents
ChEBI
A food preservative that acts by chelating with metal cations (particularly those of copper, iron and nickel) that catalyse the oxidation of fats in food.
sequestrants
sequestrant
sequestrants
ChEBI
A food additive which liberates gas so as to increase the volume of a dough or batter, resulting in a lighter and softer finished product.
food raising agent
food raising agents
leavening agent
leavening agents
raising agents
raising agent
food raising agent
ChEBI
food raising agents
ChEBI
leavening agent
ChEBI
leavening agents
ChEBI
raising agents
ChEBI
A food additive that is a (generally inert) gas which is used to envelop foodstuffs during packing and so protect them from unwanted chemical reactions such as food spoilage or oxidation during subsequent transport and storage. The term includes propellant gases, used to expel foods from a container.
food packaging gases
food packaging gas
food packaging gases
ChEBI
A propellant that is used to expel foods from an aerosol container.
food propellants
food propellant
food propellants
ChEBI
A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
Any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
dietary component
dietary components
food components
food component
dietary component
ChEBI
dietary components
ChEBI
food components
ChEBI
environmental contaminant
A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a "R" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure.
refrigerants
refrigerant
refrigerants
ChEBI
Any compound that is added to manufactured materials to inhibit, suppress, or delay the production of flames and so prevent the spread of fire.
flame retardants
flame retardant
flame retardants
ChEBI
Any inorganic anion with a valency of three.
trivalent inorganic anions
trivalent inorganic anion
trivalent inorganic anions
ChEBI
Any inorganic anion with a valency of two.
divalent inorganic anions
divalent inorganic anion
divalent inorganic anions
ChEBI
Any inorganic anion with a valency of one.
monovalent inorganic anions
monovalent inorganic anion
monovalent inorganic anions
ChEBI
An animal metabolite produced by arthropods such as crabs, lobsters, crayfish, shrimps and krill.
crustacean metabolites
crustacean metabolite
crustacean metabolites
ChEBI
A Daphnia metabolite produced by the species Daphnia magna.
Daphnia magna metabolites
Daphnia magna metabolite
Daphnia magna metabolites
ChEBI
A crustacean metabolite produced by the genus of small planktonic arthropods, Daphnia
Daphnia metabolites
Daphnia metabolite
Daphnia metabolites
ChEBI
Any eukaryotic metabolite produced during a metabolic reaction in algae including unicellular organisms like chlorella and diatoms to multicellular organisms like giant kelps and brown algae.
algal metabolites
algal metabolite
algal metabolites
ChEBI
Any metal which causes the onset of an allergic reaction.
allergenic metal
allergenic metals
metal allergens
metal allergen
allergenic metal
ChEBI
allergenic metals
ChEBI
metal allergens
ChEBI
A mixture consisting of urea (typically 40-45%), ammonium nitrate (30-35%) and water (30-20%). It is used as a nitrogen fertilizer in agriculture.
UAN
urea ammonium nitrate solution
urea ammonium nitrate
UAN
ChEBI
urea ammonium nitrate solution
ChEBI
A mixture obtained by combining ammonium nitrate, calcium nitrate and water. It is widely used as a nitrogen fertilizer in agriculture.
CAN
ammonium nitrate limestone
limestone ammonium nitrate
nitro-chalk
nitro-limestone
calcium ammonium nitrate
CAN
ChEBI
ammonium nitrate limestone
ChEBI
limestone ammonium nitrate
ChEBI
nitro-chalk
ChEBI
nitro-limestone
ChEBI
A mixture obtained by combining ammonium sulfate and urea.
ammonium sulfate-urea
urea ammonium sulfate
urea-ammonium sulfate
ammonium sulfate urea
ammonium sulfate-urea
ChEBI
urea ammonium sulfate
ChEBI
urea-ammonium sulfate
ChEBI
macroscopic spatial feature
geographic feature
An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
man-made feature
manmade feature
anthropogenic geographic feature
An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
ORCID:0000-0002-4366-3088
administrative area
administrative division
administrative entity
boundary region
civil area
district
free trade zone
governed place
leased area (government)
leased zone (government)
neutral zone (political)
prefecture
protectorate
sheikdom
sultanate
trade zone
administrative region
administrative area
ADL:FTT
administrative division
ADL:FTT
administrative division
Getty:TGN
administrative entity
Getty:TGN
boundary region
ADL:FTT
civil area
ADL:FTT
district
ADL:FTT
free trade zone
ADL:FTT
governed place
ADL:FTT
leased area (government)
ADL:FTT
leased zone (government)
ADL:FTT
neutral zone (political)
ADL:FTT
prefecture
ADL:FTT
protectorate
ADL:FTT
sheikdom
ADL:FTT
sultanate
ADL:FTT
trade zone
ADL:FTT
A primary administrative division of a country, such as a state in the United States.
countries, 1st order division
first level subdivision
first-order administrative division
first-order administrative region
A primary administrative division of a country, such as a state in the United States.
Geonames:http://www.geonames.org/export/codes.html
countries, 1st order division
ADL:FTT
first level subdivision
Getty:TGN
first-order administrative division
Geonames:feature
A subdivision of a first-order administrative division.
countries, 2nd order division
second level subdivision
second-order administrative division
second-order administrative region
A subdivision of a first-order administrative division.
Geonames:http://www.geonames.org/export/codes.html
countries, 2nd order division
ADL:FTT
second level subdivision
Getty:TGN
second-order administrative division
Geonames:feature
A subdivision of a second-order administrative division.
barrio
countries, 3rd order division
third level subdivision
third-order administrative division
third-order administrative region
A subdivision of a second-order administrative division.
Geonames:http://www.geonames.org/export/codes.html
barrio
ADL:FTT
countries, 3rd order division
ADL:FTT
third level subdivision
Getty:TGN
third-order administrative division
Geonames:feature
A political association with effective dominion over a geographic area.
nation
independent nation
independent political entity
independent sovereign nation
country
political entity
state
national geopolitical entity
A political association with effective dominion over a geographic area.
https://en.wikipedia.org/wiki/State
nation
ADL:FTT
independent nation
Getty:TGN
independent political entity
Getty:TGN
independent sovereign nation
Getty:TGN
country
ADL:FTT
political entity
ADL:FTT
A geographical feature associated with water.
fluvial feature
hydrographic feature
A geographical feature associated with water.
MA:ma
fluvial feature
ADL:FTT
A marine water body which is constitutes the majority of an astronomical body's hydrosphere.
Ocean
ocean
ocean region
ocean
Ocean
NASA:earthrealm
ocean
Geonames:feature
ocean region
ADL:FTT
A large expanse of saline water usually connected with an ocean.
Sea
sea
channel
closed sea
marginal sea
open sea
open sound
open water
sea
A large expanse of saline water usually connected with an ocean.
https://en.wikipedia.org/wiki/Sea
Sea
NASA:earthrealm
sea
ADL:FTT
sea
Geonames:feature
closed sea
USGS:SDTS
marginal sea
USGS:SDTS
open sea
USGS:SDTS
open sound
USGS:SDTS
open water
USGS:SDTS
A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
saline hydrographic feature
A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
https://en.wikipedia.org/wiki/Salinity
A lake whose water contains a considerable concentration of dissolved salts.
salt lake
salina
soda lake
saline lake
A lake whose water contains a considerable concentration of dissolved salts.
MA:ma
salt lake
USGS:SDTS
salina
USGS:SDTS
A body of water or other liquid of considerable size contained in a depression on a landmass.
catch basin
open water
tarn
broad
llyn
loch
lochan
lough
mere
mortlake
pasteuer lake
lake
A body of water or other liquid of considerable size contained in a depression on a landmass.
https://en.wikipedia.org/wiki/Lake
catch basin
USGS:SDTS
open water
USGS:SDTS
tarn
ADL:FTT
lochan
ADL:FTT
mortlake
USGS:SDTS
pasteuer lake
USGS:SDTS
A stream which, through permanent or seasonal flow processes, moves from elevated land towards lower elevations through a definite channel and empties either into a sea, lake, or another river or ends on land as bed seepage and evapotranspiration exceed water supply.
rio
braided river
river
A stream which, through permanent or seasonal flow processes, moves from elevated land towards lower elevations through a definite channel and empties either into a sea, lake, or another river or ends on land as bed seepage and evapotranspiration exceed water supply.
ADL:FTT
https://en.wikipedia.org/wiki/River
rio
ADL:FTT
rio
USGS:SDTS
braided river
USGS:SDTS
A watercourse which is linear and flows across the solid portion of a planetary surface.
watercourse
Stream
stream
streams
braided stream
fork (hydrographic
lode
millstream
stream bend
Creek
beck
brook
burn (hydrographic)
creek
rivulet
stream
A watercourse which is linear and flows across the solid portion of a planetary surface.
USGS:http://mapping.usgs.gov/www/ti/GNIS/gnis_users_guide_appendixc.html
watercourse
ADL:FTT
watercourse
USGS:SDTS
Stream
NASA:earthrealm
stream
Geonames:feature
streams
Geonames:feature
braided stream
USGS:SDTS
fork (hydrographic
ADL:FTT
lode
USGS:SDTS
stream bend
ADL:FTT
Creek
NASA:earthrealm
beck
USGS:SDTS
brook
ADL:FTT
brook
Getty:TGN
burn (hydrographic)
ADL:FTT
creek
ADL:FTT
creek
Getty:TGN
creek
USGS:SDTS
rivulet
USGS:SDTS
An artificial body of water, often contained by a dam, constructed for the purpose of water storage.
lake
reservoir
covered reservoir
reservoir
An artificial body of water, often contained by a dam, constructed for the purpose of water storage.
MA:ma
lake
USGS:SDTS
reservoir
Geonames:feature
covered reservoir
ADL:FTT
A cylindrical hole, pit, or tunnel drilled or dug down to a depth from which water, oil, or gas can be pumped or brought to the surface.
well
A cylindrical hole, pit, or tunnel drilled or dug down to a depth from which water, oil, or gas can be pumped or brought to the surface.
Geonames:feature
A point where groundwater or steam flows out of the ground, and is thus where the aquifer surface meets the ground surface or where there is a fissure.
SPRING
Spring
spring
seep
spring
A point where groundwater or steam flows out of the ground, and is thus where the aquifer surface meets the ground surface or where there is a fissure.
https://en.wikipedia.org/wiki/Spring_%28hydrosphere%29#Classification
SPRING
USGS:SDTS
Spring
NASA:earthrealm
spring
Geonames:feature
seep
USGS:SDTS
A flowing body of water.
culvert
dredged channel
fork
gulch
gully
gut
gutter
kill
lode
narrows
overflow channel
passage
pup
race
ravine
reach
rill
rivulet
run
runnel
seachannel
seaway
spillway
stream
tideway
wash
water gap
awawa
barranca
beck
branch
brook
course
draw
moat
narrows
narrows (hydrographic)
watercourse
A flowing body of water.
https://en.wikipedia.org/wiki/Watercourse
culvert
USGS:SDTS
dredged channel
USGS:SDTS
fork
USGS:SDTS
gulch
USGS:SDTS
gully
USGS:SDTS
gut
Getty:TGN
gut
USGS:SDTS
gutter
USGS:SDTS
kill
USGS:SDTS
lode
USGS:SDTS
narrows
Geonames:feature
narrows
USGS:SDTS
overflow channel
USGS:SDTS
passage
Getty:TGN
passage
USGS:SDTS
pup
USGS:SDTS
race
USGS:SDTS
ravine
USGS:SDTS
reach
Geonames:feature
reach
Getty:TGN
reach
USGS:SDTS
rill
USGS:SDTS
rivulet
USGS:SDTS
run
Getty:TGN
run
USGS:SDTS
runnel
USGS:SDTS
seachannel
USGS:SDTS
seaway
USGS:SDTS
spillway
Geonames:feature
spillway
USGS:SDTS
stream
ADL:FTT
tideway
USGS:SDTS
wash
USGS:SDTS
water gap
USGS:SDTS
awawa
USGS:SDTS
barranca
USGS:SDTS
beck
USGS:SDTS
branch
USGS:SDTS
brook
USGS:SDTS
course
USGS:SDTS
draw
USGS:SDTS
moat
USGS:SDTS
narrows
Getty:TGN
narrows (hydrographic)
ADL:FTT
A sheet of saline water separated from the open sea by sand or shingle banks. The sheet of water between an offshore reef, especially of coral and mainland. The sheet of water within a ring or horseshoe shaped atoll.
LAGOON
Lagoon
lagoon
lagoons
laguna
barrier lagoon
lagoon
A sheet of saline water separated from the open sea by sand or shingle banks. The sheet of water between an offshore reef, especially of coral and mainland. The sheet of water within a ring or horseshoe shaped atoll.
USGS:SDTS
LAGOON
USGS:SDTS
Lagoon
NASA:earthrealm
lagoon
Geonames:feature
lagoons
Geonames:feature
laguna
ADL:FTT
laguna
USGS:SDTS
barrier lagoon
USGS:SDTS
An vegetated area which overlaps a wetland ecosystem.
WetlandRegion
wetland area
An vegetated area which overlaps a wetland ecosystem.
https://en.wikipedia.org/wiki/Wetland
WetlandRegion
NASA:earthrealm
A dense growth of shrubbery planted as a fence or boundary.
HEDGE
hedgerow
shelter belt
hedge
A dense growth of shrubbery planted as a fence or boundary.
USGS:SDTS
HEDGE
USGS:SDTS
hedgerow
USGS:SDTS
shelter belt
USGS:SDTS
A swamp which is located in tropical or subtropical environments and is determined by communities of trees and shrubs growing saline coastal environments.
woodland
mangal
mangrove swamp
MangroveForest
mangrove swamp
A swamp which is located in tropical or subtropical environments and is determined by communities of trees and shrubs growing saline coastal environments.
MA:ma
woodland
USGS:SDTS
mangrove swamp
Geonames:feature
MangroveForest
NASA:earthrealm
An accumulation of water of varying size.
hydrographic feature
aquatic feature
bodies of water
body of water
waterbody
water body
An accumulation of water of varying size.
https://en.wikipedia.org/wiki/Body_of_water
hydrographic feature
ADL:FTT
bodies of water
Getty:TGN
body of water
ADL:FTT
body of water
Getty:TGN
An underground or underwater passage.
TUNNEL
cave
natural tunnel
tunnel
An underground or underwater passage.
USGS:SDTS
TUNNEL
USGS:SDTS
cave
ADL:FTT
natural tunnel
Geonames:feature
natural tunnel
Getty:TGN
A construction that has been assembled by deliberate human effort.
constructed feature
human construction
A construction that has been assembled by deliberate human effort.
MA:ma
A permanent walled and roofed construction.
BUILDING
building
building
A permanent walled and roofed construction.
USGS:SDTS
BUILDING
USGS:SDTS
building
Geonames:feature
A barrier constructed across a watercourse to control the flow or raise the level of water.
DAM
Dam
dam
barrage
dam site
dam
A barrier constructed across a watercourse to control the flow or raise the level of water.
USGS:SDTS
DAM
USGS:SDTS
Dam
NASA:earthrealm
dam
Geonames:feature
barrage
USGS:SDTS
dam site
ADL:FTT
barn
cattle dipping tank
corral
dairy
feedlot
grange
grazing allotment
irrigated field
nursery
pastoral site
sheepfold
stockyard
AgriculturalLands
agricultural colony
agricultural facility
agricultural land
agricultural reserve
agricultural site
agricultural ecosystem
barn
ADL:FTT
cattle dipping tank
ADL:FTT
corral
ADL:FTT
dairy
ADL:FTT
feedlot
ADL:FTT
grange
ADL:FTT
grazing allotment
ADL:FTT
irrigated field
ADL:FTT
nursery
ADL:FTT
nursery
Geonames:feature
pastoral site
ADL:FTT
sheepfold
ADL:FTT
stockyard
ADL:FTT
AgriculturalLands
NASA:earthrealm
agricultural colony
Geonames:feature
agricultural facility
ADL:FTT
agricultural land
Getty:TGN
agricultural reserve
ADL:FTT
agricultural reserve
Geonames:feature
agricultural site
ADL:FTT
An area of land which is used for the cultivation of crops or grazing of livestock, including any agricultural constructions therein.
agricultural site
FARM
farm
farms
farmstead
ranch
farm
An area of land which is used for the cultivation of crops or grazing of livestock, including any agricultural constructions therein.
USGS:SDTS
agricultural site
ADL:FTT
FARM
USGS:SDTS
farm
Geonames:feature
farms
Geonames:feature
farmstead
ADL:FTT
ranch
Geonames:feature
ranch
Getty:TGN
ranch
USGS:SDTS
A landform that extends above the surrounding terrain in a limited area.
Mountain
mountains
mountain
A landform that extends above the surrounding terrain in a limited area.
https://en.wikipedia.org/wiki/Mountain#United_Kingdom
https://www.unep-wcmc.org/resources-and-data/mountain-watch--environmental-change-sustainable-development-in-mountains
https://www.usgs.gov/faqs/what-difference-between-mountain-hill-and-peak-lake-and-pond-or-river-and-creek
Mountain
NASA:earthrealm
mountains
Geonames:feature
A rounded elevation of limited extent rising above the surrounding land with local relief of less than 300m.
cerro
foothill
hill
hillock
hills
knoll
mount
mountain
hill
A rounded elevation of limited extent rising above the surrounding land with local relief of less than 300m.
Geonames:feature
foothill
ADL:FTT
foothill
USGS:SDTS
hill
Geonames:feature
hillock
USGS:SDTS
hills
Geonames:feature
knoll
USGS:SDTS
mount
USGS:SDTS
mountain
ADL:FTT
A region of general uniform slope, comparatively level, and of considerable extent.
PLAIN
Plain
plain
interfluve
llanos
outwash plain
plain
A region of general uniform slope, comparatively level, and of considerable extent.
USGS:SDTS
PLAIN
USGS:SDTS
Plain
NASA:earthrealm
plain
Geonames:feature
interfluve
ADL:FTT
llanos
ADL:FTT
outwash plain
USGS:SDTS
An area of flat, low-lying land adjacent to a coast and separated from the interior by other features.
coastal plain
An area of flat, low-lying land adjacent to a coast and separated from the interior by other features.
https://en.wikipedia.org/wiki/Coastal_plain
A landform consisting of loose rock particles such as sand, gravel, shingle, pebbles, cobble, or even shell fragments along the shoreline of a body of water.
Beach
beach berm
lagoon beach
beach
beaches
foreshore flats
rivage
strand
beach
A landform consisting of loose rock particles such as sand, gravel, shingle, pebbles, cobble, or even shell fragments along the shoreline of a body of water.
https://en.wikipedia.org/wiki/Beach
Beach
NASA:earthrealm
beach berm
USGS:SDTS
lagoon beach
USGS:SDTS
beach
Geonames:feature
beaches
Geonames:feature
foreshore flats
USGS:SDTS
rivage
USGS:SDTS
strand
ADL:FTT
strand
USGS:SDTS
A landform consisting of loose rock particles such as sand, gravel, shingle, pebbles, cobble, or even shell fragments along the shoreline of a sea.
strand
sea beach
A landform consisting of loose rock particles such as sand, gravel, shingle, pebbles, cobble, or even shell fragments along the shoreline of a sea.
https://en.wikipedia.org/wiki/Beach
A landform consisting of loose rock particles such as sand, gravel, shingle, pebbles, cobble, or even shell fragments along the shoreline of a lake.
lacustrine beach
A landform consisting of loose rock particles such as sand, gravel, shingle, pebbles, cobble, or even shell fragments along the shoreline of a lake.
MA:ma
A part of an astronomical body associated with a volcano - an opening, or rupture, in that body's surface or crust - which allows hot, molten rock, ash and gases to escape from deep below the surface.
volcanic landform
volcanic feature
A part of an astronomical body associated with a volcano - an opening, or rupture, in that body's surface or crust - which allows hot, molten rock, ash and gases to escape from deep below the surface.
https://en.wikipedia.org/wiki/Volcano
volcanic landform
Getty:TGN
A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
arid region
desert area
A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
USGS:SDTS
arid region
ADL:FTT
Area of dry or relatively dry land surrounded by water or low wetland.
cay
eyot
holm
hummock
isle
islet
key
island
Area of dry or relatively dry land surrounded by water or low wetland.
USGS:SDTS
cay
USGS:SDTS
hummock
USGS:SDTS
isle
ADL:FTT
islet
ADL:FTT
islet
Getty:TGN
islet
USGS:SDTS
key
USGS:SDTS
A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
chasm
coulee
dale
glacial gorge
glacial trough
gulch
gully
median valley
shelf valley
glen
goe
gorge
graben
hollow
lavaka
moat
ravine
re-entrant
seachannel
strath
trench
vale
water gap
valley
A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
ADL:FTT
https://en.wikipedia.org/wiki/Valley
chasm
USGS:SDTS
coulee
USGS:SDTS
dale
USGS:SDTS
glacial gorge
USGS:SDTS
glacial trough
USGS:SDTS
gulch
USGS:SDTS
gully
Getty:TGN
gully
USGS:SDTS
median valley
ADL:FTT
median valley
Geonames:feature
shelf valley
Geonames:feature
glen
ADL:FTT
glen
USGS:SDTS
goe
USGS:SDTS
gorge
Geonames:feature
gorge
USGS:SDTS
graben
USGS:SDTS
hollow
ADL:FTT
hollow
Getty:TGN
hollow
USGS:SDTS
moat
USGS:SDTS
ravine
USGS:SDTS
re-entrant
USGS:SDTS
seachannel
USGS:SDTS
strath
USGS:SDTS
trench
USGS:SDTS
water gap
USGS:SDTS
An area in which grasses (Graminae) are a significant component of the vegetation.
grazing area
herbaceous area
grassland area
An area in which grasses (Graminae) are a significant component of the vegetation.
https://en.wikipedia.org/wiki/Grassland
grazing area
Getty:TGN
herbaceous area
USGS:SDTS
A grassland ecosystem which contains a variety of annual, biennial and perennial plants growing on rolling or flat terrain.
meadow
hay meadow
meadow ecosystem
A grassland ecosystem which contains a variety of annual, biennial and perennial plants growing on rolling or flat terrain.
https://en.wikipedia.org/wiki/Meadow
meadow
Geonames:feature
hay meadow
USGS:SDTS
Land having a cover of trees, shrubs, or both.
brigalow
pine grove
caatinga
chanaral
coniferous forest
copse
deciduous forest
equatorial forest
equatorial rain forest
garique
grove
jungle
mallee scrub
monsoon forest
moor
mott
motte
mulga
mulga scrub
rain forest
reforested area
sagebrush
scrub
shrub
silva
stand
taiga
thicket
thorn forest
tropical rain forest
wood
wooded area
woodland area
Land having a cover of trees, shrubs, or both.
USGS:SDTS
brigalow
USGS:SDTS
pine grove
Geonames:feature
caatinga
USGS:SDTS
chanaral
USGS:SDTS
coniferous forest
USGS:SDTS
copse
USGS:SDTS
deciduous forest
USGS:SDTS
equatorial forest
USGS:SDTS
equatorial rain forest
USGS:SDTS
garique
USGS:SDTS
grove
ADL:FTT
grove
USGS:SDTS
jungle
Getty:TGN
jungle
USGS:SDTS
mallee scrub
USGS:SDTS
monsoon forest
USGS:SDTS
moor
USGS:SDTS
motte
USGS:SDTS
mulga
USGS:SDTS
mulga scrub
USGS:SDTS
rain forest
ADL:FTT
rain forest
Getty:TGN
reforested area
USGS:SDTS
sagebrush
USGS:SDTS
scrub
USGS:SDTS
shrub
USGS:SDTS
silva
USGS:SDTS
stand
USGS:SDTS
taiga
USGS:SDTS
thicket
USGS:SDTS
thorn forest
USGS:SDTS
tropical rain forest
USGS:SDTS
wood
ADL:FTT
wood
Getty:TGN
wood
USGS:SDTS
wooded area
USGS:SDTS
An area with a high density of trees. A small forest may be called a wood.
forest
wood
forested area
An area with a high density of trees. A small forest may be called a wood.
https://en.wikipedia.org/wiki/Forest
forest
Geonames:feature
wood
Getty:TGN
A vegetated area which is part of a tundra ecosystem.
Arctic land
TundraEcosystem
area of tundra
A vegetated area which is part of a tundra ecosystem.
Arctic land
ADL:FTT
https://en.wikipedia.org/wiki/Tundra
TundraEcosystem
NASA:earthrealm
A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
agricultural site
field
cropland
grassland
agricultural field
A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
https://en.wikipedia.org/wiki/Field_%28agriculture%29
agricultural site
ADL:FTT
field
Geonames:feature
cropland
USGS:SDTS
grassland
USGS:SDTS
A forest that has been intentionally established by human intervention.
planted forest
A forest that has been intentionally established by human intervention.
MA:ma
A geographical region whose affairs and population are administered by an authority.
political entity
political entity
A geographical region whose affairs and population are administered by an authority.
MA:ma
political entity
Geonames:feature
A valley that no longer has a surface flow of water. Typically found in either Karst (limestone) or chalk terrain.
dry valley
A valley that no longer has a surface flow of water. Typically found in either Karst (limestone) or chalk terrain.
https://en.wikipedia.org/wiki/Dry_valley
A valley that contains, and has been formed by, a stream.
gullie
ravine
stream valley
A valley that contains, and has been formed by, a stream.
MA:ma
ravine
Geonames:feature
ravine
USGS:SDTS
A ridge of rocks, lying near the surface of the sea, which may be visible at low tide, but is usually covered by water.
REEF
atoll reef
bank reef
barrier reef
fringing reef
shore reef
submerged reef
ledge
reef
reef flat
reefs
rocky reef
A ridge of rocks, lying near the surface of the sea, which may be visible at low tide, but is usually covered by water.
USGS:SDTS
REEF
USGS:SDTS
atoll reef
USGS:SDTS
bank reef
USGS:SDTS
barrier reef
ADL:FTT
barrier reef
USGS:SDTS
fringing reef
ADL:FTT
fringing reef
USGS:SDTS
shore reef
USGS:SDTS
submerged reef
USGS:SDTS
ledge
USGS:SDTS
reef
Geonames:feature
reef flat
USGS:SDTS
reefs
Geonames:feature
A hydrographic feature characterized by the dominance of snow or ice.
glacer
Ice
LandIce
glacial landform
glacier feature
glacial feature
A hydrographic feature characterized by the dominance of snow or ice.
MA:ma
glacer
ADL:FTT
Ice
NASA:earthrealm
LandIce
NASA:earthrealm
glacial landform
Getty:TGN
glacier feature
ADL:FTT
Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
Permafrost
permafrost
Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
https://en.wikipedia.org/wiki/Permafrost
Permafrost
NASA:earthrealm
An opening of the sea into the land.
coastal inlet
coastal inlet
An opening of the sea into the land.
USGS:SDTS
The sloping margin of a watercourse, serving to confine it to its natural channel.
mount
shore
bank
The sloping margin of a watercourse, serving to confine it to its natural channel.
MA:ma
mount
USGS:SDTS
shore
USGS:SDTS
The sloping margin of a stream, serving to confine it to its natural channel.
stream bank
bank (hydrographic)
stream bank
The sloping margin of a stream, serving to confine it to its natural channel.
MA:ma
stream bank
Geonames:feature
bank (hydrographic)
ADL:FTT
The sloping margin of a river, serving to confine it to its natural channel.
riverbank
river bank
The sloping margin of a river, serving to confine it to its natural channel.
MA:ma
riverbank
Getty:TGN
Aragonite structures produced by living organisms, found in shallow, marine waters with little nutrients in the water.
CoralReef
coral reef
barrier reef
fringing reef
reef
coral reef
Aragonite structures produced by living organisms, found in shallow, marine waters with little nutrients in the water.
https://en.wikipedia.org/wiki/Coral_reef
CoralReef
NASA:earthrealm
coral reef
ADL:FTT
coral reef
Geonames:feature
coral reef
USGS:SDTS
fringing reef
ADL:FTT
fringing reef
USGS:SDTS
reef
USGS:SDTS
A small, isolated, fertile or green area in a desert region, usually having a spring or well.
OASIS
oasis
desert oasis
A small, isolated, fertile or green area in a desert region, usually having a spring or well.
USGS:SDTS
OASIS
USGS:SDTS
oasis
Geonames:feature
oasis
Getty:TGN
An oceanic island, often having a characteristic ring-like shape surrounding a lagoon. Atolls are formed when coral reef grows around a volcanic island that later subsides into the ocean.
island
atoll
coral atoll
REEF, ISLAND
atoll
reef
atoll
An oceanic island, often having a characteristic ring-like shape surrounding a lagoon. Atolls are formed when coral reef grows around a volcanic island that later subsides into the ocean.
https://en.wikipedia.org/wiki/Atoll
island
ADL:FTT
island
USGS:SDTS
atoll
Geonames:feature
REEF, ISLAND
USGS:SDTS
atoll
USGS:SDTS
reef
USGS:SDTS
A hill of sand built by eolian processes.
mount
ridge
sandy area
Dune
dune
sand dune
interdune trough
sand hill
dune
A hill of sand built by eolian processes.
https://en.wikipedia.org/wiki/Dune
mount
USGS:SDTS
ridge
USGS:SDTS
sandy area
ADL:FTT
sandy area
Geonames:feature
sandy area
Getty:TGN
Dune
NASA:earthrealm
dune
Geonames:feature
sand dune
USGS:SDTS
interdune trough
ADL:FTT
sand hill
USGS:SDTS
A landform elevated above the surrounding area.
elevation
A landform elevated above the surrounding area.
MA:ma
An artificial slope or wall, usually earthen, which parallels the course of a river, built for the purpose of containing the river.
EMBANKMENT
REVETMENT
berm
dike
dike (manmade)
dyke
embankment
levee
revetment
levee
An artificial slope or wall, usually earthen, which parallels the course of a river, built for the purpose of containing the river.
https://en.wikipedia.org/wiki/Levee
EMBANKMENT
USGS:SDTS
REVETMENT
USGS:SDTS
berm
ADL:FTT
dike
Geonames:feature
dike
Getty:TGN
dike
USGS:SDTS
dike (manmade)
ADL:FTT
dyke
USGS:SDTS
embankment
ADL:FTT
levee
Geonames:feature
revetment
ADL:FTT
An elevated and comparatively level expanse of land.
PLATEAU
Plateau
highland
intermontane plateau
plateau
table mountain
tableknoll
tableland
tablemount
upland
plateau
An elevated and comparatively level expanse of land.
USGS:SDTS
PLATEAU
USGS:SDTS
Plateau
NASA:earthrealm
highland
Getty:TGN
intermontane plateau
USGS:SDTS
plateau
Geonames:feature
table mountain
ADL:FTT
tableknoll
USGS:SDTS
tableland
ADL:FTT
tableland
USGS:SDTS
tablemount
USGS:SDTS
upland
ADL:FTT
upland
Geonames:feature
upland
Getty:TGN
A tributary valley with the floor at a higher relief than the main channel into which it flows. They are most commonly associated with U-shaped valleys when a tributary glacier flows into a glacier of larger volume.
valley
hanging valley
hanging valley
A tributary valley with the floor at a higher relief than the main channel into which it flows. They are most commonly associated with U-shaped valleys when a tributary glacier flows into a glacier of larger volume.
https://en.wikipedia.org/wiki/Valley#Hanging_valleys
valley
ADL:FTT
hanging valley
Geonames:feature
A part of an astronomical body which is primarily composed of a continuous volume of solid material, shaped by one or more environmental processes.
geological feature
physiographic feature
solid astronomical body part
A part of an astronomical body which is primarily composed of a continuous volume of solid material, shaped by one or more environmental processes.
https://en.wikipedia.org/wiki/Landform
geological feature
ADL:FTT
Broken rock that appears at the bottom of crags, mountain cliffs or valley shoulders.
TALUS
talus slope
scree
Broken rock that appears at the bottom of crags, mountain cliffs or valley shoulders.
https://en.wikipedia.org/wiki/Scree
TALUS
USGS:SDTS
talus slope
Geonames:feature
talus slope
Getty:TGN
An island that does not sit on a continental shelf, and is of volcanic origin.
volcanic island
oceanic island
An island that does not sit on a continental shelf, and is of volcanic origin.
https://en.wikipedia.org/wiki/Island#Oceanic_islands
A wetland ecosystem which overlaps both terrestrial and marine ecosystems.
coastal wetland ecosystem
A wetland ecosystem which overlaps both terrestrial and marine ecosystems.
MA:ma
A wetland ecosystem in which land mass is permanently inundated by shallow bodies of water, generally with a substantial number of hummocks, or dry-land protrusions.
wetland
Swamp
swamp
cienaga
swamp ecosystem
A wetland ecosystem in which land mass is permanently inundated by shallow bodies of water, generally with a substantial number of hummocks, or dry-land protrusions.
https://en.wikipedia.org/wiki/Swamp
wetland
ADL:FTT
wetland
USGS:SDTS
Swamp
NASA:earthrealm
swamp
Geonames:feature
cienaga
ADL:FTT
A wetland which is inundated with water that contains low concentrations of salts.
freshwater wetland ecosystem
A wetland which is inundated with water that contains low concentrations of salts.
MA:ma
An opening, or rupture, in the Earth's surface or crust, which allows hot, molten rock, ash and gases to escape from deep below the surface.
mount
Volcano
volcano
volcano
An opening, or rupture, in the Earth's surface or crust, which allows hot, molten rock, ash and gases to escape from deep below the surface.
https://en.wikipedia.org/wiki/Volcano
mount
USGS:SDTS
Volcano
NASA:earthrealm
volcano
Geonames:feature
A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
valley
glacial valley
A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
MA:ma
valley
USGS:SDTS
An area which is subject to periodic flooding.
FLOOD PLAIN
Floodplain
floodplain
bottomland
flood plain
An area which is subject to periodic flooding.
USGS:SDTS
FLOOD PLAIN
USGS:SDTS
Floodplain
NASA:earthrealm
floodplain
ADL:FTT
bottomland
ADL:FTT
An area of land of low topographic relief that historically supported grasses and herbs, with few trees, and having generally a mesic (moderate or temperate) climate. Dominated by tall grasses (contrast steppe).
grassland
llanos
pampa
plain
veld
prairie
An area of land of low topographic relief that historically supported grasses and herbs, with few trees, and having generally a mesic (moderate or temperate) climate. Dominated by tall grasses (contrast steppe).
https://en.wikipedia.org/wiki/Prairie
grassland
ADL:FTT
grassland
USGS:SDTS
llanos
ADL:FTT
pampa
Getty:TGN
plain
ADL:FTT
veld
USGS:SDTS
A grassland of the tropics or subtropics with scattered trees.
Savanna
grassland
savannah
savanna
A grassland of the tropics or subtropics with scattered trees.
https://en.wikipedia.org/wiki/Tropical_and_subtropical_grasslands%2C_savannas%2C_and_shrublands
Savanna
NASA:earthrealm
grassland
ADL:FTT
grassland
USGS:SDTS
savannah
ADL:FTT
A plain without trees (apart from those near rivers and lakes); it is similar to a prairie, although a prairie is generally considered as being dominated by tall grasses, while short grasses are said to be normal in the steppe. It may be semi-desert, or covered with grass or shrubs or both, depending on the season and latitude.
grassland
pampa
pampas
puszta
steppe
A plain without trees (apart from those near rivers and lakes); it is similar to a prairie, although a prairie is generally considered as being dominated by tall grasses, while short grasses are said to be normal in the steppe. It may be semi-desert, or covered with grass or shrubs or both, depending on the season and latitude.
https://en.wikipedia.org/wiki/Steppe
grassland
ADL:FTT
grassland
USGS:SDTS
pampas
USGS:SDTS
puszta
USGS:SDTS
A grassland ecosystem which is used for grazing of ungulate livestock as part of a farm or ranch.
grazing area
pasture
A grassland ecosystem which is used for grazing of ungulate livestock as part of a farm or ranch.
https://en.wikipedia.org/wiki/Pasture
grazing area
Geonames:feature
A slope which separates different physiogeographic provinces that are typically composed of rocks of different age and compositoin.
escarpment
scarp
cliff
cuesta
escarpment
A slope which separates different physiogeographic provinces that are typically composed of rocks of different age and compositoin.
https://en.wikipedia.org/wiki/Escarpment
escarpment
Geonames:feature
cliff
USGS:SDTS
cuesta
ADL:FTT
cuesta
Geonames:feature
cuesta
Getty:TGN
A long and narrow elevation with steep sides.
RIDGE
Ridge
beach cusp
beach ridge
icecap ridge
rise (seafloor)
arete
crest
cuesta
hogback
ridge
spur
spur (physiographic)
ridge
A long and narrow elevation with steep sides.
USGS:SDTS
RIDGE
USGS:SDTS
Ridge
NASA:earthrealm
beach cusp
USGS:SDTS
beach ridge
ADL:FTT
beach ridge
USGS:SDTS
icecap ridge
ADL:FTT
rise (seafloor)
ADL:FTT
arete
ADL:FTT
arete
USGS:SDTS
crest
USGS:SDTS
cuesta
ADL:FTT
cuesta
USGS:SDTS
hogback
ADL:FTT
ridge
Geonames:feature
spur
Getty:TGN
spur (physiographic)
ADL:FTT
An isolated hill with steep sides and a small flat top, smaller than mesas and plateaus. Buttes are formed by erosion when a cap of hard rock, usually of volcanic origin, covers a layer of softer rock that is easily worn away. This hard rock avoids erosion while the rock around it wears down.
plateau
butte
butte
An isolated hill with steep sides and a small flat top, smaller than mesas and plateaus. Buttes are formed by erosion when a cap of hard rock, usually of volcanic origin, covers a layer of softer rock that is easily worn away. This hard rock avoids erosion while the rock around it wears down.
ADL:FTT
plateau
USGS:SDTS
butte
Geonames:feature
An extent or area of land where surface water from rain and melting snow or ice converges to a single point at lower elevation, usually the exit of the basin, where the waters join another waterbody.
Basin
CATCHMENT
Catchment
Watershed
catchment
drainage basin
watershed
drainage basin
An extent or area of land where surface water from rain and melting snow or ice converges to a single point at lower elevation, usually the exit of the basin, where the waters join another waterbody.
https://en.wikipedia.org/wiki/Drainage_basin
Basin
NASA:earthrealm
CATCHMENT
USGS:SDTS
Catchment
NASA:earthrealm
Watershed
NASA:earthrealm
catchment
ADL:FTT
catchment
USGS:SDTS
drainage basin
Geonames:feature
watershed
ADL:FTT
A flooded parcel of arable land used for growing rice and other semiaquatic crops.
paddy field
A flooded parcel of arable land used for growing rice and other semiaquatic crops.
https://en.wikipedia.org/wiki/Rice_paddy
Area covered with low-growing or stunted perennial vegetation and usually not mixed with trees.
scrubland
bush
chaparal area
heath
scrub
shrubland
scrubland area
Area covered with low-growing or stunted perennial vegetation and usually not mixed with trees.
ADL:FTT
scrubland
Geonames:feature
bush
ADL:FTT
bush
Getty:TGN
chaparal area
ADL:FTT
heath
ADL:FTT
scrub
USGS:SDTS
shrubland
ADL:FTT
shrubland
USGS:SDTS
The general region of indefinite width that extends from the sea inland to the first major change in terrain features.
coast line
coastal area
coastline
sea coast
The general region of indefinite width that extends from the sea inland to the first major change in terrain features.
USGS:SDTS
coastal area
USGS:SDTS
coastline
USGS:SDTS
That part of the land in immediate contact with a body of water including the area between high and low water lines.
coastal zone
SHORE
shore
shoreface
beach face
foreshore
inshore
rivage
seashore
strand
shore
That part of the land in immediate contact with a body of water including the area between high and low water lines.
USGS:SDTS
coastal zone
ADL:FTT
SHORE
USGS:SDTS
shore
Geonames:feature
shoreface
USGS:SDTS
beach face
USGS:SDTS
foreshore
USGS:SDTS
inshore
USGS:SDTS
rivage
USGS:SDTS
seashore
USGS:SDTS
strand
USGS:SDTS
A landform sunken or depressed below the surrounding area.
barrier basin
depression
non tidal basin
pan
pan (geologic)
pans
tidal basin
depression
A landform sunken or depressed below the surrounding area.
https://en.wikipedia.org/wiki/Depression_%28geology%29
barrier basin
USGS:SDTS
depression
Geonames:feature
non tidal basin
USGS:SDTS
pan
Geonames:feature
pan
Getty:TGN
pan (geologic)
ADL:FTT
pans
Geonames:feature
tidal basin
USGS:SDTS
A fluvioglacial landform occurring as the result of blocks of ice calving from the front of a receding glacier and becoming partially to wholly buried by glacial outwash. Glacial outwash is generated when sediment laden streams of meltwater flow away from the glacier and are deposited to form broad outwash plains called sandurs. When the ice blocks melt, holes are left in the sandur.
basin
kettle hole
kettle
A fluvioglacial landform occurring as the result of blocks of ice calving from the front of a receding glacier and becoming partially to wholly buried by glacial outwash. Glacial outwash is generated when sediment laden streams of meltwater flow away from the glacier and are deposited to form broad outwash plains called sandurs. When the ice blocks melt, holes are left in the sandur.
https://en.wikipedia.org/wiki/Kettle_%28geology%29
basin
USGS:SDTS
The plain formed by the large amounts of silt and sediment, picked up as a glacier erodes the underlying rocks as it moves slowly downhill, and at the snout of the glacier, meltwater can carry this sediment away from the glacier and deposit it on a broad plain. The material in the outwash plain is often size-sorted by the water runoff of the melting glacier with the finest materials, like silt, being the most distantly re-deposited, whereas larger boulders are the closest to the original terminus of the glacier.
outwash plain
sandur
The plain formed by the large amounts of silt and sediment, picked up as a glacier erodes the underlying rocks as it moves slowly downhill, and at the snout of the glacier, meltwater can carry this sediment away from the glacier and deposit it on a broad plain. The material in the outwash plain is often size-sorted by the water runoff of the melting glacier with the finest materials, like silt, being the most distantly re-deposited, whereas larger boulders are the closest to the original terminus of the glacier.
https://en.wikipedia.org/wiki/Sandur
A zone beneath the land surface and above the level of permanent groundwater or phreatic zone in which water has a hydraulic head less than atmospheric pressure and is retained by a combination of adhesion and capillary action.
unsaturated zone
vadose zone
A zone beneath the land surface and above the level of permanent groundwater or phreatic zone in which water has a hydraulic head less than atmospheric pressure and is retained by a combination of adhesion and capillary action.
http://wasg.iinet.net.au/terminol.html
https://en.wikipedia.org/wiki/Vadose_zone
unsaturated zone
https://en.wikipedia.org/wiki/Vadose_zone
A compound astronomical body part which is located beneath the land surface and in which all interstices are filled with water that has a hydraulic head greater than atmospheric pressure due to the weight of overlying groundwater.
zone of saturation
phreatic zone
A compound astronomical body part which is located beneath the land surface and in which all interstices are filled with water that has a hydraulic head greater than atmospheric pressure due to the weight of overlying groundwater.
http://wasg.iinet.net.au/terminol.html
https://en.wikipedia.org/wiki/Phreatic_zone
zone of saturation
https://en.wikipedia.org/wiki/Phreatic_zone
An abiotic mesoscopic feature made of the mineral material of the crust of the Earth.
piece of rock
An abiotic mesoscopic feature made of the mineral material of the crust of the Earth.
MA:ma
A piece of rock that is two millimeters (2mm) in its largest dimension (about 1/12 of an inch) and no more than 75 millimeters (about 3 inches).
piece of gravel
A piece of rock that is two millimeters (2mm) in its largest dimension (about 1/12 of an inch) and no more than 75 millimeters (about 3 inches).
https://en.wikipedia.org/wiki/Gravel
A lake purposefully constructed.
artificial lake
A lake purposefully constructed.
MA:ma
A large sea or ocean inlet larger than a bay, deeper than a bight, wider than a fjord, or it may identify a narrow sea or ocean channel between two bodies of land.
sound
A large sea or ocean inlet larger than a bay, deeper than a bight, wider than a fjord, or it may identify a narrow sea or ocean channel between two bodies of land.
https://en.wikipedia.org/wiki/Sound_%28geography%29
The physical confine of a river, slough or ocean strait consisting of a bed and banks.
channel of a watercourse
The physical confine of a river, slough or ocean strait consisting of a bed and banks.
https://en.wikipedia.org/wiki/Channel_%28geography%29
lake channel
coastal dune
An island that lies in a river.
ait
eyot
fluvial island
river island
An island that lies in a river.
MA:ma
fluvial island
Getty:TGN
An island that lies in a lake.
lake island
An island that lies in a lake.
MA:ma
2
A biome is an ecosystem to which resident ecological communities have evolved adaptations.
major habitat type
EcosytemType
biome
A biome is an ecosystem to which resident ecological communities have evolved adaptations.
DOI:10.1186/2041-1480-4-43
https://en.wikipedia.org/wiki/Biome
major habitat type
WWF:Biome
EcosytemType
NASA:earthrealm
A terrace associated with a kame.
kame terrace
A terrace associated with a kame.
MA:ma
A biome which is primarily or completely situated on a landmass.
terrestrial realm
terrestrial biome
A biome which is primarily or completely situated on a landmass.
https://en.wikipedia.org/wiki/Biome#Terrestrial_biomes
An aquatic biome which is determined by a marine water body.
marine realm
marine biome
An aquatic biome which is determined by a marine water body.
ISBN:978-0-618-45504-1
MA:ma
https://en.wikipedia.org/wiki/Ocean
A reservoir constructed for the purpose of providing water for irrigation.
irrigation reservoir
A reservoir constructed for the purpose of providing water for irrigation.
https://en.wikipedia.org/wiki/Reservoir
A dam constructed for the purpose of holding water in a reservoir for irrigation.
irrigation dam
A dam constructed for the purpose of holding water in a reservoir for irrigation.
https://en.wikipedia.org/wiki/Dam#By_purpose
An opening of the sea into the land, or of a lake into its shore.
anse
arm
firth
ria
inlet
An opening of the sea into the land, or of a lake into its shore.
USGS:SDTS
https://en.wikipedia.org/wiki/Inlet
anse
USGS:SDTS
arm
USGS:SDTS
firth
USGS:SDTS
ria
USGS:SDTS
An opening of a lake into its shore.
lake inlet
An opening of a lake into its shore.
USGS:SDTS
A mountain or a hill.
MOUNT
cerrito
cerro
dome
hill
hillock
hummock
inselberg
knob
knoll
koppje
monadnock
mountain
rise
mount
A mountain or a hill.
USGS:SDTS
MOUNT
USGS:SDTS
cerrito
USGS:SDTS
cerro
ADL:FTT
cerro
USGS:SDTS
dome
USGS:SDTS
hill
USGS:SDTS
hillock
USGS:SDTS
hummock
Getty:TGN
hummock
USGS:SDTS
inselberg
USGS:SDTS
knob
USGS:SDTS
knoll
USGS:SDTS
koppje
USGS:SDTS
monadnock
USGS:SDTS
mountain
ADL:FTT
rise
USGS:SDTS
The summit of a mount.
PEAK
peak
peaks
ahu
ice peak
mountain crest
mountain summit
nunatak
summit
peak
The summit of a mount.
USGS:SDTS
PEAK
USGS:SDTS
peak
Geonames:feature
peaks
Geonames:feature
ahu
ADL:FTT
ice peak
USGS:SDTS
mountain crest
ADL:FTT
mountain summit
ADL:FTT
nunatak
ADL:FTT
summit
ADL:FTT
summit
USGS:SDTS
That part of the land in immediate contact with a sea, including the intertidal zone.
shore
sea shore
That part of the land in immediate contact with a sea, including the intertidal zone.
MA:ma
The portion of the ground surface which lies below water.
BOTTOM
submerged bed
The portion of the ground surface which lies below water.
USGS:SDTS
BOTTOM
USGS:SDTS
A step-like feature between higher and lower ground: a relatively flat or gently inclined shelf of earth, backed and fronted by steep slopes or manmade detaining walls.
TERRACE
bench
ledge
rock terrace
terrace
bench
bench (natural)
terrace
A step-like feature between higher and lower ground: a relatively flat or gently inclined shelf of earth, backed and fronted by steep slopes or manmade detaining walls.
USGS:SDTS
TERRACE
USGS:SDTS
bench
Geonames:feature
ledge
ADL:FTT
rock terrace
USGS:SDTS
terrace
Geonames:feature
bench
Getty:TGN
bench
USGS:SDTS
bench (natural)
ADL:FTT
A generally circular saucer or bowl-shaped depression caused by explosive action.
CRATER
crater
A generally circular saucer or bowl-shaped depression caused by explosive action.
Geonames:feature
CRATER
USGS:SDTS
agricultural terrace
A relatively undissected upland between adjacent stream valleys.
plain
interfluve
interfluve
A relatively undissected upland between adjacent stream valleys.
Geonames:feature
plain
ADL:FTT
interfluve
Geonames:feature
A ridge of sand just inland and parallel to the beach, usually in series.
beach ridge
beach ridge
A ridge of sand just inland and parallel to the beach, usually in series.
Geonames:feature
beach ridge
Geonames:feature
An irregularly shaped hill or mound composed of sorted or stratified sand and gravel that is deposited in contact with the glacial ice. It can have an irregular shape. Kames are often associated with kettles, and this is referred to as kame and kettle topography. When the ice retreats further, the delta kame often collapses. Kame terraces are frequently found along the side of a glacial valley and are the deposits of meltwater streams flowing between the ice and the adjacent valley side.
mount
ridge
kame
An irregularly shaped hill or mound composed of sorted or stratified sand and gravel that is deposited in contact with the glacial ice. It can have an irregular shape. Kames are often associated with kettles, and this is referred to as kame and kettle topography. When the ice retreats further, the delta kame often collapses. Kame terraces are frequently found along the side of a glacial valley and are the deposits of meltwater streams flowing between the ice and the adjacent valley side.
https://en.wikipedia.org/wiki/Kame
mount
USGS:SDTS
ridge
USGS:SDTS
A beach which is armoured with pebbles or small to medium sized cobbles.
pebble beach
shingle beach
A beach which is armoured with pebbles or small to medium sized cobbles.
https://en.wikipedia.org/wiki/Shingle_beach
An aquatic biome which is determined by a body of freshwater.
freshwater realm
freshwater biome
An aquatic biome which is determined by a body of freshwater.
MA:ma
A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
rock
A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
MA:ma
https://en.wikipedia.org/wiki/Rock_(geology)
Soil is an environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, gases, liquids, and a broad range of resident micro- and macroorganisms.
regolith
soil
Soil is an environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, gases, liquids, and a broad range of resident micro- and macroorganisms.
https://en.wikipedia.org/wiki/Soil
A significant accumulation of water which is part of a marine biome.
body of marine water
marine waterbody
marine water body
A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
flank
side
slope
A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
MA:ma
Water that has been adversely affected in quality by anthropogenic influence.
waste water
Water that has been adversely affected in quality by anthropogenic influence.
https://en.wikipedia.org/wiki/Wastewater
The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
air
The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
https://en.wikipedia.org/wiki/Air
An environmental material primarily composed of dihydrogen oxide in its liquid form.
water
liquid water
An environmental material primarily composed of dihydrogen oxide in its liquid form.
MA:ma
Sediment is an environmental substance comprised of any particulate matter that can be transported by fluid flow and which eventually is deposited as a layer of solid particles on the bedor bottom of a body of water or other liquid.
sediment
Sediment is an environmental substance comprised of any particulate matter that can be transported by fluid flow and which eventually is deposited as a layer of solid particles on the bedor bottom of a body of water or other liquid.
https://en.wikipedia.org/wiki/Sediment
Minute solid particles with diameters less than 500 micrometers. Occurs in and may be deposited from, the atmosphere.
dust
Minute solid particles with diameters less than 500 micrometers. Occurs in and may be deposited from, the atmosphere.
https://en.wikipedia.org/wiki/Dust
Water which contains a significant concentration of dissolved salts.
salt water
saline water
Water which has a low concentration of dissolved solutes, particularly that of sodium chloride.
freshwater
sweet water
fresh water
An igneous rock that results from magma reaching the surface either as lava or fragmental ejecta.
volcanic rock
An igneous rock that results from magma reaching the surface either as lava or fragmental ejecta.
https://en.wikipedia.org/wiki/Rock_%28geology%29
A rock formed by deposition of either clastic sediments, organic matter, or chemical precipitates (evaporites), followed by compaction of the particulate matter and cementation during diagenesis.
sedimentary rock
A rock formed by deposition of either clastic sediments, organic matter, or chemical precipitates (evaporites), followed by compaction of the particulate matter and cementation during diagenesis.
https://en.wikipedia.org/wiki/Rock_%28geology%29
Wastewater that is contaminated with feces or urine,
sewage
Wastewater that is contaminated with feces or urine,
https://en.wikipedia.org/wiki/Wastewater
A biome which is determined by a water body and which has ecological climax communities adapted to life in or on water.
aquatic biome
obsolete ground water
true
Water that is found on the surface of an astronomical object.
surface water
Water that is found on the surface of an astronomical object.
https://en.wikipedia.org/wiki/Surface_water
wastewater treatment plant
The residual semi-solid material left from domestic or industrial processes, or wastewater treatment processes.
sludge
The residual semi-solid material left from domestic or industrial processes, or wastewater treatment processes.
https://en.wikipedia.org/wiki/Sludge
Sediment characterised by the absence of oxygen.
anoxic sediment
anaerobic sediment
Sediment characterised by the absence of oxygen.
ORCID:0000-0002-4366-3088
A sedimentary rock composed largely of the mineral calcite.
limestone
A sedimentary rock composed largely of the mineral calcite.
https://en.wikipedia.org/wiki/Limestone
A soft, white, porous limestone.
chalk
A soft, white, porous limestone.
MA:ma
A sedimentary rock composed mainly of sand-size mineral or rock grains.
sandstone
A sedimentary rock composed mainly of sand-size mineral or rock grains.
https://en.wikipedia.org/wiki/Sandstone
Sediment which has increased levels of one or more chemical compounds.
chemically enriched sediment
stream sediment
anaerobic sludge
Mud which has no or neglible concentrations of dissolved oxygen.
anoxic mud
anaerobic mud
anaerobic stream sediment
beach sand
A clastic rock with a particle size of 4 to 64 millimeters based on the Krumbein phi scale of sedimentology.
pebble
A clastic rock with a particle size of 4 to 64 millimeters based on the Krumbein phi scale of sedimentology.
https://en.wikipedia.org/wiki/Pebble
A rock or rock fragment with a particle size between 64 and 256 mm.
cobble
A rock or rock fragment with a particle size between 64 and 256 mm.
https://en.wikipedia.org/wiki/Cobble
Water which has physicochemical properties that have been determined by the processes occuring in a sea or ocean.
ocean water
seawater
sea water
Coastal sea water is sea water that is adjacent to a coast.
coastal water
coastal ocean water
coastal oceanic water
coastal seawater
coastal sea water
The aerobically decomposed remnants of organic materials.
compost
The aerobically decomposed remnants of organic materials.
https://en.wikipedia.org/wiki/Compost
polluted water
contaminated water
sandy beach
Chemically-enriched sediment which has increased levels of organic compounds.
organically enriched sediment
Chemically-enriched sediment which has increased levels of inorganic compounds.
inorganically enriched sediment
A channel which is constructed by removing materials from land or submerged beds.
borehole
Arenosols are sandy soils, including both soils developed in residual sands after in situ weathering of usually quartz-rich sediments or rock, and soils developed in recently deposited sands such as dunes in deserts and beach lands.
psamment
sandy soil
arenosol
Arenosols are sandy soils, including both soils developed in residual sands after in situ weathering of usually quartz-rich sediments or rock, and soils developed in recently deposited sands such as dunes in deserts and beach lands.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
sandy soil
ORCID:0000-0001-8743-9574
Andosols are soils that develop in volcanic ejecta or glasses under almost any climate (except under hyperarid climate conditions). However, Andosols may also develop in other silicate-rich materials under acid weathering in humid and perhumid climates.
andosol
Andosols are soils that develop in volcanic ejecta or glasses under almost any climate (except under hyperarid climate conditions). However, Andosols may also develop in other silicate-rich materials under acid weathering in humid and perhumid climates.
Acrisols are soils that have a higher clay content in the subsoil than in the topsoil as a result of pedogenetic processes (especially clay migration) leading to an argic subsoil horizon. Acrisols have in certain depths a low base saturation and low-activity clays.
acrisol
Acrisols are soils that have a higher clay content in the subsoil than in the topsoil as a result of pedogenetic processes (especially clay migration) leading to an argic subsoil horizon. Acrisols have in certain depths a low base saturation and low-activity clays.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Cambisols combine soils with at least an incipient subsurface soil formation. Transformation of parent material is evident from structure formation and mostly brownish discoloration, increasing clay percentage, and/or carbonate removal.
cambisol
Cambisols combine soils with at least an incipient subsurface soil formation. Transformation of parent material is evident from structure formation and mostly brownish discoloration, increasing clay percentage, and/or carbonate removal.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Chernozems are soils with a thick black surface layer that is rich in organic matter.
black earth
boroll
chernozem
Chernozems are soils with a thick black surface layer that is rich in organic matter.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Kastanozems are dry grassland soils, among them the zonal soils of the short-grass steppe belt, south of the Eurasian tall-grass steppe belt with Chernozems. Kastanozems have a similar profile to that of Chernozems but the humus-rich surface horizon is thinner and not as dark as that of the Chernozems and they show more prominent accumulation of secondary carbonates.
kastanozem
Kastanozems are dry grassland soils, among them the zonal soils of the short-grass steppe belt, south of the Eurasian tall-grass steppe belt with Chernozems. Kastanozems have a similar profile to that of Chernozems but the humus-rich surface horizon is thinner and not as dark as that of the Chernozems and they show more prominent accumulation of secondary carbonates.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Histosols comprise soils formed in organic material. These vary from soils developed in predominantly moss peat in boreal, arctic and subarctic regions, via moss peat, reeds/ sedge peat (fen) and forest peat in temperate regions to mangrove peat and swamp forest peat in the humid tropics. Histosols are found at all altitudes, but the vast majority occurs in lowlands.
histosol
Histosols comprise soils formed in organic material. These vary from soils developed in predominantly moss peat in boreal, arctic and subarctic regions, via moss peat, reeds/ sedge peat (fen) and forest peat in temperate regions to mangrove peat and swamp forest peat in the humid tropics. Histosols are found at all altitudes, but the vast majority occurs in lowlands.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Gleysols are wetland soils that, unless drained, are saturated with groundwater for long enough periods to develop a characteristic gleyic colour pattern. This pattern is essentially made up of reddish, brownish or yellowish colours at ped surfaces and/or in the upper soil layer or layers, in combination with greyish/bluish colours inside the peds and/or deeper in the soil.
gley soil
gleysol
Gleysols are wetland soils that, unless drained, are saturated with groundwater for long enough periods to develop a characteristic gleyic colour pattern. This pattern is essentially made up of reddish, brownish or yellowish colours at ped surfaces and/or in the upper soil layer or layers, in combination with greyish/bluish colours inside the peds and/or deeper in the soil.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Gypsisols are soils with substantial secondary accumulation of gypsum (calcium sulfate). These soils are found in the driest parts of the arid climate zone.
gypsisol
Gypsisols are soils with substantial secondary accumulation of gypsum (calcium sulfate). These soils are found in the driest parts of the arid climate zone.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Ferralsols represent the classical, deeply weathered, red or yellow soils of the humid tropics. These soils have diffuse horizon boundaries, a clay assemblage dominated by low-activity clays (mainly kaolinite) and a high content of sesquioxides.
oxisol
ferralsol
Ferralsols represent the classical, deeply weathered, red or yellow soils of the humid tropics. These soils have diffuse horizon boundaries, a clay assemblage dominated by low-activity clays (mainly kaolinite) and a high content of sesquioxides.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Nitisols are deep, well-drained, red, tropical soils with diffuse horizon boundaries and a subsurface horizon with more than 30 percent clay and moderate to strong angular blocky structure elements that easily fall apart into characteristic shiny, polyhedric (nutty) elements. Weathering is relatively advanced but Nitisols are far more productive than most other red, tropical soils.
nitisol
Nitisols are deep, well-drained, red, tropical soils with diffuse horizon boundaries and a subsurface horizon with more than 30 percent clay and moderate to strong angular blocky structure elements that easily fall apart into characteristic shiny, polyhedric (nutty) elements. Weathering is relatively advanced but Nitisols are far more productive than most other red, tropical soils.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Luvisols are soils that have a higher clay content in the subsoil than in the topsoil as a result of pedogenetic processes (especially clay migration) leading to an argic subsoil horizon. Luvisols have high-activity clays throughout the argic horizon and a high base saturation at certain depths.
luvisol
Luvisols are soils that have a higher clay content in the subsoil than in the topsoil as a result of pedogenetic processes (especially clay migration) leading to an argic subsoil horizon. Luvisols have high-activity clays throughout the argic horizon and a high base saturation at certain depths.
http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Phaeozems accommodate soils of relatively wet grassland and forest regions in moderately continental climates. Phaeozems are much like Chernozems and Kastanozems but are leached more intensively. Consequently, they have dark, humus rich surface horizons that, in comparison with Chernozems and Kastanozems, are less rich in bases. Phaeozems may or may not have secondary carbonates but have a high base saturation in the upper metre of the soil.
phaeozem
Phaeozems accommodate soils of relatively wet grassland and forest regions in moderately continental climates. Phaeozems are much like Chernozems and Kastanozems but are leached more intensively. Consequently, they have dark, humus rich surface horizons that, in comparison with Chernozems and Kastanozems, are less rich in bases. Phaeozems may or may not have secondary carbonates but have a high base saturation in the upper metre of the soil.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Solonchaks are soils that have a high concentration of soluble salts at some time in the year. Solonchaks are largely confined to the arid and semi-arid climate zones and to coastal regions in all climates.
solonchak
Solonchaks are soils that have a high concentration of soluble salts at some time in the year. Solonchaks are largely confined to the arid and semi-arid climate zones and to coastal regions in all climates.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
A soil in which there is a high content of expansive clay known as montmorillonite that forms deep cracks in drier seasons or years. Alternate shrinking and swelling causes self-mulching, where the soil material consistently mixes itself, causing vertisols to have an extremely deep A horizon and no B horizon.
vertisol
A soil in which there is a high content of expansive clay known as montmorillonite that forms deep cracks in drier seasons or years. Alternate shrinking and swelling causes self-mulching, where the soil material consistently mixes itself, causing vertisols to have an extremely deep A horizon and no B horizon.
https://en.wikipedia.org/wiki/Vertisol
Solonetz are soils with a dense, strongly structured, clayey subsurface horizon that has a high proportion of adsorbed Na and/or Mg ions. Solonetz that contain free soda (Na2CO3) are strongly alkaline (field pH > 8.5).
solonetz
Solonetz are soils with a dense, strongly structured, clayey subsurface horizon that has a high proportion of adsorbed Na and/or Mg ions. Solonetz that contain free soda (Na2CO3) are strongly alkaline (field pH > 8.5).
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Regosols form a taxonomic remnant group containing all soils that could not be accommodated in any of the other RSGs. In practice, Regosols are very weakly developed mineral soils in unconsolidated materials that do not have a mollic or umbric horizon, are not very shallow or very rich in gravels (Leptosols), sandy (Arenosols) or with fluvic materials (Fluvisols). Regosols are extensive in eroding lands, particularly in arid and semi-arid areas and in mountainous terrain.
regosol
Regosols form a taxonomic remnant group containing all soils that could not be accommodated in any of the other RSGs. In practice, Regosols are very weakly developed mineral soils in unconsolidated materials that do not have a mollic or umbric horizon, are not very shallow or very rich in gravels (Leptosols), sandy (Arenosols) or with fluvic materials (Fluvisols). Regosols are extensive in eroding lands, particularly in arid and semi-arid areas and in mountainous terrain.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
Podzols are soils with a typically ash-grey upper subsurface horizon, bleached by loss of organic matter and iron oxides, on top of a dark accumulation horizon with brown, reddish or black illuviated humus and/or reddish Fe compounds. Podzols occur in humid areas in the boreal and temperate zones and locally also in the tropics.
podsol
podosolic soil
podzol
Podzols are soils with a typically ash-grey upper subsurface horizon, bleached by loss of organic matter and iron oxides, on top of a dark accumulation horizon with brown, reddish or black illuviated humus and/or reddish Fe compounds. Podzols occur in humid areas in the boreal and temperate zones and locally also in the tropics.
http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
A soil composed of sand, silt, and clay in relatively even concentration (about 40-40-20% concentration respectively).
loam
A soil composed of sand, silt, and clay in relatively even concentration (about 40-40-20% concentration respectively).
https://en.wikipedia.org/wiki/Loam
A portion of soil which is found in a forested area.
forest soil
A material which is not the desired output of a process and which is typically the input of a process which removes it from its producer (e.g. a disposal process).
waste material
Industrial wastes are liquid, solid and gaseous wastes originating from the manufacture of specific products.
industrial waste
industrial waste material
Industrial wastes are liquid, solid and gaseous wastes originating from the manufacture of specific products.
ISBN:978-92-1-161386-5
http://stats.oecd.org/glossary/detail.asp?ID=1340
WWTP
waste treatment plant
Fluvisols accommodate genetically young, azonal soils in alluvial deposits.
fluvisol
Fluvisols accommodate genetically young, azonal soils in alluvial deposits.
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf
animal waste
animal waste material
Hay is grass, legumes or other herbaceous plants that have been cut, dried, and stored for use as animal fodder, particularly for grazing livestock such as cattle, horses, goats, and sheep.
hay
Hay is grass, legumes or other herbaceous plants that have been cut, dried, and stored for use as animal fodder, particularly for grazing livestock such as cattle, horses, goats, and sheep.
https://en.wikipedia.org/wiki/Hay
The biomass remaining after sugarcane stalks are crushed to extract their juice.
sugarcane bagasse
bagasse
The biomass remaining after sugarcane stalks are crushed to extract their juice.
https://en.wikipedia.org/wiki/Bagasse
organic waste
organic waste material
A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2 micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water.
clay
A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2 micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water.
https://en.wikipedia.org/wiki/Clay
A fermented, high-moisture forage that can be fed to ruminants.
silage
A fermented, high-moisture forage that can be fed to ruminants.
https://en.wikipedia.org/wiki/Silage
animal manure
grass silage
A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products.
manufactured good
manufactured product
A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products.
https://en.wikipedia.org/wiki/Manufactured_product
A portion of enriched soil is a portion of soil with elevated levels of some material entity.
enriched soil
horse manure
An industrial building is a building within which goods are produced and, optionally, stored or within which services are rendered.
industrial building
An industrial building is a building within which goods are produced and, optionally, stored or within which services are rendered.
https://en.wikipedia.org/wiki/Industry
An agricultural byproduct, the dry stalk of a cereal plant, after the nutrient grain or seed has been removed.
straw
An agricultural byproduct, the dry stalk of a cereal plant, after the nutrient grain or seed has been removed.
https://en.wikipedia.org/wiki/Straw
rye grass silage
chalk soil
A portion of soil which is found in a savanna.
savanna soil
Soil which is derived from compost.
compost soil
Soil which has little to no water content and in which minerals and other soluble chemical entities have either bonded or become adsorbed to sold particles due to insufficient water availability.
dry soil
A portion of soil which is part of a cropland or a rangeland biome.
farm soil
A portion of soil which is found in a grassland.
grassland soil
field soil
meadow soil
Compost soil which is frozen.
frozen compost soil
Soil which has, as a part, a portion of either fresh or processed animal manure.
manured soil
Soil which is composed of a large proportion of mud, thus having properties resembling mud.
muddy soil
Soil which is found in a pasture and in which vegetation, such as the grass used for the grazing of ungulates, grows.
pasture soil
peat
peat soil
peat
ENVO:cjm
A portion of soil which is found in a steppe.
steppe soil
upland soil
Water which has physicochemical properties determined by processes which occur beneath the planetary crust.
subterranean water
underground water
Mud which is part of a marine ecosystem.
marine mud
Sand which is part of a desert.
desert sand
A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system.
environmental
portion of environmental material
environmental material
A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system.
DOI:10.1186/2041-1480-4-43
MA:ma
ORCID:0000-0002-4366-3088
URL:http://ontology.buffalo.edu/smith/articles/niches.html
A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
surface layer
A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
URL:http://www.merriam-webster.com/dictionary/surface
Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.
aerosol
Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.
https://en.wikipedia.org/wiki/Aerosol
An underground layer of water-bearing permeable rock or unconsolidated materials (gravel, sand, silt, or clay) from which groundwater can be usefully extracted using a water well.
aquifer
An underground layer of water-bearing permeable rock or unconsolidated materials (gravel, sand, silt, or clay) from which groundwater can be usefully extracted using a water well.
https://en.wikipedia.org/wiki/Aquifer
Anthropogenic material in or on which organisms may live.
anthropogenic environmental material
Anthropogenic material in or on which organisms may live.
MA:ma
agricultural environmental material
A liquid or semi-liquid mixture of water and some combination of soil, silt, and clay.
mud
A liquid or semi-liquid mixture of water and some combination of soil, silt, and clay.
https://en.wikipedia.org/wiki/Mud
Silt is granular material of a size somewhere between sand and clay whose mineral origin is quartz and feldspar.
silt
Silt is granular material of a size somewhere between sand and clay whose mineral origin is quartz and feldspar.
https://en.wikipedia.org/wiki/Silt
A naturally occurring granular material composed of finely divided rock and mineral particles.
sand
A naturally occurring granular material composed of finely divided rock and mineral particles.
https://en.wikipedia.org/wiki/Sand
Gravel is an environmental material which is composed of pieces of rock that are at least two millimeters (2mm) in its largest dimension and no more than 75 millimeters.
gravel
Gravel is an environmental material which is composed of pieces of rock that are at least two millimeters (2mm) in its largest dimension and no more than 75 millimeters.
https://en.wikipedia.org/wiki/Gravel
The marine pelagic biome (pelagic meaning open sea) is that of the marine water column, from the surface to the greatest depths.
marine pelagic biome
The marine pelagic biome (pelagic meaning open sea) is that of the marine water column, from the surface to the greatest depths.
ISBN:978-0-7506-3384-0
The neritic epipelagic zone biome comprises the marine water column above a continental shelf.
neritic pelagic zone biome
The neritic epipelagic zone biome comprises the marine water column above a continental shelf.
ISBN:978-0-444-82619-0
ISBN:978-0-7506-3384-0
ORCID:0000-0002-4366-3088
The oceanic epipelagic zone biome comprises the marine water column offshore, beyond a continental shelf.
oceanic pelagic zone biome
The oceanic epipelagic zone biome comprises the marine water column offshore, beyond a continental shelf.
ISBN:978-0-444-82619-0
ISBN:978-0-7506-3384-0
ORCID:0000-0002-4366-3088
The oceanic sea surface microlayer (SML) biome comprises the top 1000 micrometers of the marine surface waters occurring offshore, away from a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
oceanic sea surface microlayer biome
The oceanic sea surface microlayer (SML) biome comprises the top 1000 micrometers of the marine surface waters occurring offshore, away from a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
ORCID:0000-0002-4366-3088
https://en.wikipedia.org/wiki/Sea_surface_microlayer
The neritic sea surface microlayer (SML) biome comprises the top 1000 micrometers of marine surface waters occurring above a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
neritic sea surface microlayer biome
The neritic sea surface microlayer (SML) biome comprises the top 1000 micrometers of marine surface waters occurring above a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
ORCID:0000-0002-4366-3088
https://en.wikipedia.org/wiki/Sea_surface_microlayer
A prominent or distinctive aspect, quality, or characteristic of environments occurring within the marine water column.
marine pelagic feature
A prominent or distinctive aspect, quality, or characteristic of environments occurring within the marine water column.
ISBN:978-0-618-45504-1
ORCID:0000-0002-4366-3088
A marine biome which is determined by an ocean.
ocean biome
A marine biome which is determined by an ocean.
ORCID:0000-0002-4366-3088
https://en.wikipedia.org/wiki/Ocean
Particulate material is an environmental material which is composed of microscopic portions of solid or liquid material suspended in another environmental material.
particulate matter
marine reef
Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
biomass
organic material
Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
ISBN:978-0-618-45504-1
ORCID:0000-0002-4366-3088
A shrubland biome is a terrestrial biome which includes, across its entire spatial extent, dense groups of shrubs.
shrubland biome
A desert biome is a terrestrial biome which loses more liquid water by evapotranspiration than is supplied by precipitation and includes communities adapted to these conditions.
desert biome
A terrestrial biome which comprises a tundra ecosystem that has reached its climax community.
tundra biome
An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
environmental condition
An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
DOI:10.1186/2041-1480-4-43
A tropical condition is an environmental condition in which an environmental system receives high yearly solar irradiance per unit area and, on Earth, the Sun reaches a subsolar point at least once during the solar year. This results in a hot and moist year-round climate at low elevations, which have a monthly average temperature above 18 degrees Celsius.
tropical
A tropical condition is an environmental condition in which an environmental system receives high yearly solar irradiance per unit area and, on Earth, the Sun reaches a subsolar point at least once during the solar year. This results in a hot and moist year-round climate at low elevations, which have a monthly average temperature above 18 degrees Celsius.
https://en.wikipedia.org/wiki/Tropical
A subtropical condition is an environmental condition in which an envrionmental system receives more solar irradiance than those with temperate conditions, but less than those with tropical conditions. At low elevations, this typically results in eight months of the year having average temperatures greater than or equal to 10 degrees Celsius with the coldest monthly temperature averaging between 2 and 13 degrees Celsius.
subtropical
A montane shrubland biome is a shrubland biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions.
montane shrubland biome
An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
anthrome
human biome
anthropogenic terrestrial biome
An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
http://www.eoearth.org/view/article/150128/
An environmental condition in which annual precipitation is less than half of annual potential evapotranspiration.
arid
A coastal scrubland is a scrubland which is part of a coast.
coastal chaparral
coastal scrubland
A coastal scrubland is a scrubland which is part of a coast.
https://en.wikipedia.org/wiki/California_coastal_sage_and_chaparral_ecoregion
https://en.wikipedia.org/wiki/Coastal_sage_scrub
coastal chaparral
https://en.wikipedia.org/wiki/California_chaparral_and_woodlands
A scrubland which is located in a desert.
desert scrub
desert scrubland
A scrubland which is located in a desert.
ORCID:0000-0001-8743-9574
desert scrub
ORCID:0000-0001-8743-9574
A cropland ecosystem in which dominant ecological communities are maintained in a stable state - mimicking a climax community - by human intervention.
cropland biome
A cropland ecosystem in which dominant ecological communities are maintained in a stable state - mimicking a climax community - by human intervention.
A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity.
village biome
A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity.
DOI:10.1111/j.1466-8238.2010.00540.x
DOI:10.1890/070062
A rangeland biome is an anthropogenic terrestrial biome which is primarily used for the rearing and grazing of livestock.
rangeland biome
A rangeland biome is an anthropogenic terrestrial biome which is primarily used for the rearing and grazing of livestock.
DOI:10.1111/j.1466-8238.2010.00540.x
DOI:10.1890/070062
A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use.
dense settlement biome
A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use.
DOI:10.1111/j.1466-8238.2010.00540.x
DOI:10.1890/070062
A system which has the disposition to environ one or more material entities.
environment
environmental system
A system which has the disposition to environ one or more material entities.
DOI:10.1186/2041-1480-4-43
A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
mineral material
A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
https://en.wikipedia.org/wiki/Mineral
Water vapour is a vapour which is the gas phase of water.
aqueous vapor
aqueous vapour
water vapor
water vapour
Water vapour is a vapour which is the gas phase of water.
https://en.wikipedia.org/wiki/Water_vapor
aqueous vapor
https://en.wikipedia.org/wiki/Water_vapor
aqueous vapour
https://en.wikipedia.org/wiki/Water_vapor
water vapor
https://en.wikipedia.org/wiki/Water_vapor
An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
atmosphere
An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
https://en.wikipedia.org/wiki/Atmosphere
https://en.wikipedia.org/wiki/Physical_geography
Atmospheric water vapour is water vapour that is part of an atmosphere.
atmospheric water vapor
atmospheric water vapour
Atmospheric water vapour is water vapour that is part of an atmosphere.
https://en.wikipedia.org/wiki/Water_vapor
atmospheric water vapor
https://en.wikipedia.org/wiki/Water_vapor
Clastic sedimentary rocks are sedimentary rocks that are composed of silicate minerals and rock fragments that were transported by moving fluids. Clastic rocks are composed largely of quartz, feldspar, rock (lithic) fragments, clay minerals, and mica; numerous other minerals may be present as accessories and may be important locally.
clastic sedimentary rock
Clastic sedimentary rocks are sedimentary rocks that are composed of silicate minerals and rock fragments that were transported by moving fluids. Clastic rocks are composed largely of quartz, feldspar, rock (lithic) fragments, clay minerals, and mica; numerous other minerals may be present as accessories and may be important locally.
https://en.wikipedia.org/wiki/Sedimentary_rock#Clastic_sedimentary_rocks
A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
ecoregion
A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
DOI:10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
URL:http://worldwildlife.org/biomes
Ice which is formed from water.
ice
water ice
Ice which is formed from water.
https://en.wikipedia.org/wiki/Ice
ice
http://www.eionet.europa.eu/gemet/concept/4131
Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
ecozone
Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
https://en.wikipedia.org/wiki/ecozone
A layer is a quantity of some material which is spatially continuous, has comparable thickness, and usually covers some surface.
layer
A layer is a quantity of some material which is spatially continuous, has comparable thickness, and usually covers some surface.
Wiktionary:layer
A layer which is part of a lake.
lake layer
A mass of water ice.
accumulation of ice
ice accumulation
ice mass
A layer that is part of a marine water body.
marine layer
A layer that is part of a marine water body.
ORCID:0000-0002-4366-3088
A river where fresh water flows.
freshwater river
A river where fresh water flows.
ORCID:0000-0002-4366-3088
An endolithic environment is an environment that exists within solid rock.
endolithic environment
A high temperature environment is an environment in which material entities are exposed to increased levels of heat radiation or which have molecules or atoms moving randomly with increased levels of average kinietic energy.
high temperature environment
An aquatic environment which is determined by freshwater.
fresh water environment
freshwater environment
An environmental system which has its properties and dynamics determined by saline water.
saline water environment
An environment which has a lower temperature than some local or global average.
cold environment
An anthropogenic environment is an environmental system which is the product of human activity.
anthropogenic environment
A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes.
high osmolarity environment
An environment whose dynamics are strongly influenced by water.
aquatic environment
A rocky slope is a slope which has a surface primarily composed of rock.
rocky slope
A marine environment and enviroment which is determined by a marine water body.
marine environment
A marine environment and enviroment which is determined by a marine water body.
NM:nm
An environmental system determined by seawater.
ocean water environment
sea water environment
The atmospheric boundary layer is the lowest layer of an atmosphere which is strongly influenced by its contact with a planetary surface with strong vertical mixing and in which physical quantities such as flow velocity, temperature, and moisture display rapid fluctuations (turbulence).
planetary boundary layer
atmospheric boundary layer
A planetary surface is a surface layer where the solid or liquid material of a planet comes into contact with an atmosphere or outer space.
planetary surface
A layer in a water mass, itself composed primarily of water.
aquatic layer
A dome swamp is a swamp which occurs in a depression where deeper waters at the centre of the swamp allow trees to grow taller relative to those in shallower regions of the depression. This creates a dome-like shape.
dome swamp
A gravelly slope is a slope which has a surface primarily composed of gravel.
gravelly slope
A hillside is a slope that is part of a hill.
brae
hillside
A talus slope is a slope which has a surface layer composed of scree.
scree slope
talus slope
An altitudinal condition which inheres in a bearer by virtue of the bearer having a monthly mean temperature is less than 10 degrees Celsius and being located at altitudes above the tree line and below the snowline.
alpine
An altitudinal condition which inheres in a bearer by virtue of the bearer having a monthly mean temperature is less than 10 degrees Celsius and being located at altitudes above the tree line and below the snowline.
https://en.wikipedia.org/wiki/Altitudinal_zonation
An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.
montane
An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.
https://en.wikipedia.org/wiki/Altitudinal_zonation
An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
altitudinal condition
An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
https://en.wikipedia.org/wiki/Altitudinal_zonation
An unbroken expanse (as of ice)
field
An unbroken expanse (as of ice)
http://www.merriam-webster.com/dictionary/field
A layer which is determined by a form of vegetation.
forest layer
forest stratum
woodland layer
woodland stratum
vegetation layer
An tundra climatic condition is a polar condition in which at least one month's average temperature exceeds 0 degrees Celsius.
tundra climatic condition
An tundra climatic condition is a polar condition in which at least one month's average temperature exceeds 0 degrees Celsius.
https://en.wikipedia.org/wiki/Polar_climate
Biological waste is waste containing mostly natural organic materials (remains of plants, animal excrement, biological sludge from waste-water treatment plants and so forth).
biological waste
biological waste material
Biological waste is waste containing mostly natural organic materials (remains of plants, animal excrement, biological sludge from waste-water treatment plants and so forth).
ISBN:978-92-1-161386-5
http://stats.oecd.org/glossary/detail.asp?ID=3097
A tropical marine condition is a tropical condition in which the ocean strongly influences the climate and a wet and dry season occur.
tropical marine condition
A tropical marine condition is a tropical condition in which the ocean strongly influences the climate and a wet and dry season occur.
https://en.wikipedia.org/wiki/Tropical_marine_climate
A semi-evergreen forest is a forest which undergoes a long dry season and, as a consequence, has a two-storey layer structure, a dry canopy, a leaf litter layer that only decays during moist periods trees with very small leaves or which shed their leaves to conserve water and which flower during the dry season and grow during the wet season.
semi-evergreen forest
mesophytic ecosystem
tropical marine semi-evergreen forest
A semi-evergreen forest is a forest which undergoes a long dry season and, as a consequence, has a two-storey layer structure, a dry canopy, a leaf litter layer that only decays during moist periods trees with very small leaves or which shed their leaves to conserve water and which flower during the dry season and grow during the wet season.
https://en.wikipedia.org/wiki/Tropical_marine_climate
mesophytic ecosystem
https://en.wikipedia.org/wiki/Tropical_marine_climate
tropical mangrove forest
tropical mangrove
Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
snow
Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
http://www.eionet.europa.eu/gemet/concept/7769
https://en.wikipedia.org/wiki/Snow
A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.
environmental area
environmental zone
A building part is a construction which is part of a building.
building part
montane forest
Atmospheric carbon dioxide is an environmental material composed of carbon dioxide in its gaseous form present in an atmosphere.
atmospheric carbon dioxide
A boundary wall is a constructed barrier which is usually opaque, constructed from masonry, and of greater structural strength than a fence.
defensive wall
boundary wall
A boundary wall is a constructed barrier which is usually opaque, constructed from masonry, and of greater structural strength than a fence.
https://en.wikipedia.org/wiki/Wall#Boundary_wall
A constructed barrier is a freestanding wall, berm, or fence built to limit movement of entities across a boundary.
barrier
constructed barrier
A constructed barrier is a freestanding wall, berm, or fence built to limit movement of entities across a boundary.
https://en.wikipedia.org/wiki/Border_barrier
A fence is a constructed barrier which is generally of lighter construction than a wall and used to provide visual sectioning of spaces.
fence
A fence is a constructed barrier which is generally of lighter construction than a wall and used to provide visual sectioning of spaces.
https://en.wikipedia.org/wiki/Fence
Glass is an amorphous (non-crystalline) solid which is often transparent.
glass
Glass is an amorphous (non-crystalline) solid which is often transparent.
https://en.wikipedia.org/wiki/Glass
Silica-based glass is a glass composed primarily of silicon dioxide, the primary constituent of sand.
glass
silica-based glass
A layer that is part of the atmosphere.
atmospheric layering
atmospheric layer
atmospheric layering
GEMET:http://www.eionet.europa.eu/gemet/concept/627
A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.
boundary layer
boundary layer
A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.
https://en.wikipedia.org/wiki/Boundary_layer
boundary layer
http://www.eionet.europa.eu/gemet/concept/976
mass of biological material
A gas that is primarily composed of hydrocarbon molecules.
hydrocarbon gas
Charcoal is a light, black residue, consisting of carbon and any remaining ash, obtained by removing water and other volatile constituents from animal and vegetation substances. Charcoal is usually produced by slow pyrolysis, the heating of wood or other substances in the absence of oxygen.
charcoal
Charcoal is a light, black residue, consisting of carbon and any remaining ash, obtained by removing water and other volatile constituents from animal and vegetation substances. Charcoal is usually produced by slow pyrolysis, the heating of wood or other substances in the absence of oxygen.
https://en.wikipedia.org/wiki/Charcoal
A lentic water body is a water body in which the accumulated water, in its totality, has very little to no directed flow.
lentic water body
A lotic water body is a water body in which the accumulated water, in its totality, is flowing.
lotic water body
Vaporisation of an element or compound is process whereby that element or compound undergoes a phase transition from the liquid to vapor.
vaporization
vaporisation
Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
condensation
hydrological condensation process
Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
https://en.wikipedia.org/wiki/Condensation
A volcanic eruption is a process during which lava, tephra (ash, lapilli, volcanic bombs and blocks), and assorted gases are expelled from a volcanic vent or fissure.
volcanic eruption
A volcanic eruption is a process during which lava, tephra (ash, lapilli, volcanic bombs and blocks), and assorted gases are expelled from a volcanic vent or fissure.
https://en.wikipedia.org/wiki/Types_of_volcanic_eruptions
A landmass which is part of a planet.
land
ground
planetary landmass
A landmass which is part of a planet.
Adpated from https://en.wikipedia.org/wiki/Planetary_surface
Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
space
outer space
Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
https://en.wikipedia.org/wiki/Outer_space
A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.
crust
planetary crust
A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.
https://en.wikipedia.org/wiki/Crust_(geology)
A planetary structural layer is laminar part of a terrestrial planet or other rocky body large enough to have differentiation by density. Planetary layers have differing physicochemical properties and composition.
planetary structural layer
A planetary mantle is a planetary layer which is an interior part of a terrestrial planet or other rocky body large enough to have differentiation by density.
mantle
planetary mantle
A planetary mantle is a planetary layer which is an interior part of a terrestrial planet or other rocky body large enough to have differentiation by density.
https://en.wikipedia.org/wiki/Mantle_(geology)
A lithosphere is the outermost shell of a terrestrial-type planet or natural satellite that is defined by its rigid mechanical properties.
lithosphere
A lithosphere is the outermost shell of a terrestrial-type planet or natural satellite that is defined by its rigid mechanical properties.
https://en.wikipedia.org/wiki/Lithosphere
Magma is a mixture of molten or semi-molten rock, volatiles, and solids that is found beneath the uppermost solid layer of a planetary body. Besides molten rock, magma may also contain suspended crystals, dissolved gas and sometimes gas bubbles.
magma
Magma is a mixture of molten or semi-molten rock, volatiles, and solids that is found beneath the uppermost solid layer of a planetary body. Besides molten rock, magma may also contain suspended crystals, dissolved gas and sometimes gas bubbles.
https://en.wikipedia.org/wiki/Magma
A trench is a type of excavation or depression in the ground that is generally deeper than it is wide (as opposed to a wider gully or ditch), and narrow compared to its length (as opposed to a simple hole).
trench
A trench is a type of excavation or depression in the ground that is generally deeper than it is wide (as opposed to a wider gully or ditch), and narrow compared to its length (as opposed to a simple hole).
https://en.wikipedia.org/wiki/Trench
stream channel
river channel
A role that is realized in some process wherein the bearer is discarded or not utilized further.
waste role
A geological fracture is any separation in a geologic formation, such as a joint or a fault that divides a mass of rock into two or more pieces.
fracture
fissure
geological fracture
A geological fracture is any separation in a geologic formation, such as a joint or a fault that divides a mass of rock into two or more pieces.
https://en.wikipedia.org/wiki/Fracture_(geology)
fissure
Genomes:fissure
Contaminated air is air which has sufficient concentrations of environmental pollutants such that it may adversely affect a given ecosystem.
contaminated air
A lake which has concentrations of environmental contaminants high enough to harm the ecosystems associated with it.
polluted lake
A mass of water.
water mass
A coast is the area where land meets the sea, ocean, or lake.
coast
A coast is the area where land meets the sea, ocean, or lake.
https://en.wikipedia.org/wiki/Coast
Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
precipitation
hydrological precipitation process
Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
https://en.wikipedia.org/wiki/Precipitation
Hydrological evaporation is the evaporation of water, generally as part of a planetary water cycle.
hydrological evaporation
Soil degradation is a process which results in a change in soil health status resulting in a diminished capacity of the ecosystem in which the soil occurs to provide goods and services for its beneficiaries.
soil degradation
Soil degradation is a process which results in a change in soil health status resulting in a diminished capacity of the ecosystem in which the soil occurs to provide goods and services for its beneficiaries.
FAO:http://www.fao.org/soils-portal/soil-degradation-restoration/en/
Soil erosion is a process in which exogenic processes remove soil from one location on the Earth's crust and transport it to another location where it is deposited.
soil erosion
An unusual accumulation of water above the ground caused by high tide, heavy rain, melting snow or rapid runoff from paved areas.
flood
An unusual accumulation of water above the ground caused by high tide, heavy rain, melting snow or rapid runoff from paved areas.
GEMET:http://www.eionet.europa.eu/gemet/concept/3298
Condensation is a process during which a gas undergoes a phase transition into a liquid.
condensation process
Condensation is a process during which a gas undergoes a phase transition into a liquid.
https://en.wikipedia.org/wiki/Condensation
Desublimation is a process in which a portion of some gas undergoes a phase transition into a portion of some solid.
deposition
desublimation process
Desublimation is a process in which a portion of some gas undergoes a phase transition into a portion of some solid.
https://en.wikipedia.org/wiki/Deposition_(phase_transition)
An environmental system which can sustain and allow the growth of an ecological population.
habitat
An environmental system which can sustain and allow the growth of an ecological population.
EnvO:EnvO
A process in which natural ecosystems present over an expanse of land are removed and replaced with anthropogenic ecosystems.
land consumption process
A process in which natural ecosystems present over an expanse of land are removed and replaced with anthropogenic ecosystems.
Adapted from EEA (1997) The concept of environmental space, Copenhagen, URL: http://www.eea.europa.eu/publications/92-9167-078-2/at_download/file
A lithified mass of rock that lies under the loose softer material (regolith) at the surface of the Earth or other terrestrial planet.
bedrock
A lithified mass of rock that lies under the loose softer material (regolith) at the surface of the Earth or other terrestrial planet.
https://en.wikipedia.org/wiki/Bedrock
An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
area of barren land
An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://www.mrlc.gov/nlcd11_leg.php
A part of an astronomical body which is primarily composed of a continuous volume of gaseous or aerosolised material held in shape by one or more environmental processes.
aeroform
Forest which originally covered a region before changes in the environment brought about by people. (Source: PHC)
primary forest
Forest which originally covered a region before changes in the environment brought about by people. (Source: PHC)
http://www.eionet.europa.eu/gemet/en/concept/6622
An area which is outside of a town, city, or urban area. Rural areas are primarily used for agriculture or pastoralism and may contain rural settlements.
rural area
An area which is outside of a town, city, or urban area. Rural areas are primarily used for agriculture or pastoralism and may contain rural settlements.
http://www.fao.org/docrep/015/am085e/am085e.pdf
A fire is a process whereby rapid and exothermic oxidation of a material through a combustion process releases heat, light, and other products.
fire
A fire is a process whereby rapid and exothermic oxidation of a material through a combustion process releases heat, light, and other products.
http://www.eionet.europa.eu/gemet/en/concept/3212
https://en.wikipedia.org/wiki/Fire
A conflagration which is uncontrolled and combusts material in a vegetated area, be it rural or wild.
wildland fire
wildfire
A fire which occurs in a large spatial area poses a risk to human life, animal life, health, and/or property.
blaze
large fire
conflagration
A fire which occurs in a large spatial area poses a risk to human life, animal life, health, and/or property.
https://en.wikipedia.org/wiki/Conflagration
A portion of gas which is emitted by a fire or other exothermic reaction, is of increased temperature, and typically emits light in the visible range.
flame
A portion of gas which is emitted by a fire or other exothermic reaction, is of increased temperature, and typically emits light in the visible range.
https://en.wikipedia.org/wiki/Flame
A flame which is produced by the combustion of hydrocarbon fuel.
hydrocarbon flame
A process whereby a large volume of gas moves due to a disequilibrium of physical forces.
wind
mass gaseous flow
A process whereby a large volume of gas moves due to a disequilibrium of physical forces.
https://en.wikipedia.org/wiki/Wind
wind
A mass gaseous flow which occurrs in a planet's atmosphere due to internal pressure disequilibria.
atmospheric wind
A mass gaseous flow which occurrs in a planet's atmosphere due to internal pressure disequilibria.
https://en.wikipedia.org/wiki/Wind
A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
gas
gaseous environmental material
A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
http://www.merriam-webster.com/dictionary/gas
A material entity which is composed of a volume of unbound positive and negative particles in roughly equal numbers, conducts electricity, and possesses internal magnetic fields.
plasma
A material entity which is composed of a volume of unbound positive and negative particles in roughly equal numbers, conducts electricity, and possesses internal magnetic fields.
http://www.merriam-webster.com/dictionary/plasma
https://en.wikipedia.org/wiki/Plasma_%28physics%29
An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
celestial body
astronomical body
An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
https://en.wikipedia.org/wiki/Astronomical_object
A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
planet
A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
http://solarsystem.nasa.gov/planets/whatisaplanet
https://en.wikipedia.org/wiki/Planet
An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces.
star
An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces.
https://en.wikipedia.org/wiki/Star
An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
celestial object
astronomical object
An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
https://en.wikipedia.org/wiki/Astronomical_object
A material part of an astronomical body.
astronomical body part
An environmental material which is in a solid state.
solid environmental material
An environmental material which is in a liquid state.
liquid environmental material
A biosphere is a part of an astronomical body which includes, as parts, all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
biosphere
A biosphere is a part of an astronomical body which includes, as parts, all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
http://www.biology-online.org/dictionary/Biosphere
https://en.wikipedia.org/wiki/Biosphere
A cryosphere is that part of a planet which is primarily composed of water is in solid form.
cryosphere
A cryosphere is that part of a planet which is primarily composed of water is in solid form.
https://en.wikipedia.org/wiki/Cryosphere
An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
hydrosphere
An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
https://en.wikipedia.org/wiki/Hydrosphere
An astronomical body part which is composed of soil, subject to soil formation processes, and found on the surface of a lithosphere.
pedosphere
An astronomical body part which is composed of soil, subject to soil formation processes, and found on the surface of a lithosphere.
https://en.wikipedia.org/wiki/Pedosphere
Air which has increased levels of water vapour.
humid air
Air which has a partial pressure of water vapour equal or near equal to its equilibrium vapor pressure at a given temperature.
water-vapour-saturated air
wet air
water vapour saturated air
A hydrological precipitation process in which atmospheric water vapour condenses to form droplets of liquid water massive enough to fall to a planetary surface due to the planet's gravity.
rain fall
rainfall
rain
water-based rainfall
A hydrological precipitation process in which atmospheric water vapour condenses to form droplets of liquid water massive enough to fall to a planetary surface due to the planet's gravity.
https://en.wikipedia.org/wiki/Rain
A droplet is a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid.
drop
droplet
A droplet is a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid.
A droplet formed by condensation of vapour in an atmosphere and which is sufficiently massive to overcome atmospheric resistance and fall to a planetary surface due to gravity.
raindrop
A droplet of water
water droplet
smoke
Combustion or burning is a high-temperature exothermic redox chemical reaction between a fuel and an oxidant that produces oxidized, often gaseous products, in a mixture termed as smoke.
combustion process
Combustion or burning is a high-temperature exothermic redox chemical reaction between a fuel and an oxidant that produces oxidized, often gaseous products, in a mixture termed as smoke.
https://en.wikipedia.org/wiki/Combustion
A chemical decomposition (the separation of a single chemical compound into its two or more elemental parts or to simpler compounds) caused by heat.
thermal decomposition
thermolysis
A thermolysis process in which organic material is decomposed in the absence of oxygen.
pyrolysis
A solid material whose constituents, such as atoms, molecules or ions, are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions.
crystal
A solid material whose constituents, such as atoms, molecules or ions, are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions.
https://en.wikipedia.org/wiki/Crystal
A crystal which is primarily composed of water ice.
ice crystal
water ice crystal
A vegetated area which includes a community of flowering plants that provide food for local pollinators.
flower strip
A vegetated area which includes a community of flowering plants that provide food for local pollinators.
http://dx.doi.org/10.1111/1365-2664.12605
Marl is a mass of calcium carbonate derived from mollusk shells and mixed with silt and clay.
marl
Marl is a mass of calcium carbonate derived from mollusk shells and mixed with silt and clay.
http://corn.agronomy.wisc.edu/Management/pdfs/a3671.pdf
An area of a planet's surface which is primarily covered by a shrubs, young trees, or stunted trees.. The surfaces of this area are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
area of shrub
area of scrub
An area of a planet's surface which is primarily covered by a shrubs, young trees, or stunted trees.. The surfaces of this area are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
http://dx.doi.org/10.1016/j.rse.2015.07.014
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://en.wikipedia.org/wiki/Subshrub
https://www.mrlc.gov/nlcd11_leg.php
A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.
precipitation process
A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.
https://en.wikipedia.org/wiki/Precipitation_%28chemistry%29
https://en.wikipedia.org/wiki/Precipitation
An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation planted for recreation, erosion control, or aesthetic purposes interspersed by constructed or manufactured objects and materials. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
area of developed open space
An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation planted for recreation, erosion control, or aesthetic purposes interspersed by constructed or manufactured objects and materials. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://www.mrlc.gov/nlcd11_leg.php
An area of a planet's surface which is primarily covered by sedges or forbs, possibly interpersed with grasses or grass-like plants. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
area of sedge- and forb-dominated herbaceous vegetation
An area of a planet's surface which is primarily covered by sedges or forbs, possibly interpersed with grasses or grass-like plants. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://www.mrlc.gov/nlcd11_leg.php
An area of a planet's surface which is primarily covered by gramanoid or herbaceous vegetation and which is not subject to intensive management by humans. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
area of gramanoid or herbaceous vegetation
An area of a planet's surface which is primarily covered by gramanoid or herbaceous vegetation and which is not subject to intensive management by humans. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://www.mrlc.gov/nlcd11_leg.php
A hydrological process in which irregular aggregates of snow fall to a planetary surface.
snow fall
snowfall
Rainfall which occurs when the temperature of a planetary surface and its surrounding atmosphere are below the freezing point of water, resulting in supercooled raindrops which freeze upon impact with solid surfaces.
freezing rain
freezing rain fall
freezing rainfall
Rainfall which occurs when the temperature of a planetary surface and its surrounding atmosphere are below the freezing point of water, resulting in supercooled raindrops which freeze upon impact with solid surfaces.
https://en.wikipedia.org/wiki/Freezing_rain
Regions of a planet which are not exposed to the planet's atmosphere or space, often comprising parts of one or more planetary structural layers.
planetary subsurface zone
2
An envirommental system which bridges two or more biomes and which includes ecological communities which blend these biomes' phylogenetic and phenotypic compositions.
ecotone
An envirommental system which bridges two or more biomes and which includes ecological communities which blend these biomes' phylogenetic and phenotypic compositions.
ISBN:978-0-03-058414-5
https://en.wikipedia.org/wiki/Ecotone
https://github.com/EnvironmentOntology/envo/issues/501
https://www.merriam-webster.com/dictionary/ecotone
An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
natural environment
An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
https://en.wikipedia.org/wiki/Anthropization
https://en.wikipedia.org/wiki/Natural_environment
A process during which a natural environmental system is altered by human action.
anthropization
anthropisation
A process during which a natural environmental system is altered by human action.
https://en.wikipedia.org/wiki/Anthropization
An ecotone which overlaps at least one biome which supports the growth and persistence of trees and at least one that does not. Before ceasing altogether, tree growth becomes sparse and trees appear stunted as conditions become less favourable along this ecotone.
tree line
tree-line
treeline
tree line ecotone
An ecotone which overlaps at least one biome which supports the growth and persistence of trees and at least one that does not. Before ceasing altogether, tree growth becomes sparse and trees appear stunted as conditions become less favourable along this ecotone.
https://en.wikipedia.org/wiki/Tree_line
A planet that is composed primarily of silicate rocks or metals.
rocky planet
telluric planet
Earth-like planet
terrestrial planet
A planet that is composed primarily of silicate rocks or metals.
https://en.wikipedia.org/wiki/Terrestrial_planet
A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
mass liquid flow
A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
https://en.wikipedia.org/wiki/Wind
A process during which a volume of water is transported due to a disequilibria in physical forces.
water flow process
A part of an astronomical body which includes, as parts, all the entities which have been constructed or manufactured by humans or their technology and which are within the gravitational sphere of influence of that body.
technosphere
A part of an astronomical body which includes, as parts, all the entities which have been constructed or manufactured by humans or their technology and which are within the gravitational sphere of influence of that body.
http://dx.doi.org/10.1177/2053019616677743
http://www.yourdictionary.com/technosphere
https://www.sciencedaily.com/releases/2016/11/161130085021.htm
A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation.
manufacturing process
A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation.
https://en.wikipedia.org/wiki/Manufacturing
An process during which natural or manufactured materials and products are processed and arranged by humans or their technology into structures.
human-directed construction process
An environmental system which is determined by materials bearing roughly homogeneous qualities.
environmental system determined by a quality
An environmental system within which an environmental material strongly influences the system's composition and properties.
environmental system determined by a material
An environmental system which is determined by a living organism.
host-associated environment
environmental system determined by an organism
An environmental system determined by a green plant.
plant environment
Viridiplantae-associated environment
plant-associated environment
An environmental system determined by an animal.
animal environment
Metazoan-associated environment
animal-associated environment
Underground water which is located in pore spaces found in rock or unconsolidated deposits such as soil, clay, or gravel.
ground water
groundwater
Underground water which is located in pore spaces found in rock or unconsolidated deposits such as soil, clay, or gravel.
https://en.wikipedia.org/wiki/Groundwater
A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.
meteor
A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.
https://cloudatlas.wmo.int/other-meteors.html
A meteor which is primarily composed of water.
hydrometeor
A meteor which is primarily composed of water.
https://cloudatlas.wmo.int/other-meteors.html
A meteor which is primarily composed of rock.
lithometeor
A lake which has formed as the result of processes that are not or are only minimally driven by human activity.
natural lake
A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
radiation
A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
https://en.wikipedia.org/wiki/Radiation
A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.
EM radiation
electromagnetic radiation
A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.
https://en.wikipedia.org/wiki/Electromagnetic_radiation
An environment which is determined by materials which bear significant concentrations of salts.
saline environment
An environmental system which has its properties and dynamics determined by soil.
soil environment
An environmental system which has its properties and dynamics determined by the subsurface zone of a planet.
planetary subsurface environment
An environmental system which has its properties and dynamics determined by those parts of a planetary subsurface zone which are not saline.
non-saline planetary subsurface environment
An environmental system which has its properties and dynamics determined by sediment.
sediment environment
An environmental system which has its properties and dynamics determined by an aerosol.
aerosol environment
An environmental system which has its properties and dynamics determined by a saline aerosol.
saline aerosol environment
An environmental system which has its properties and dynamics determined by an aerosol with a low concentration of dissolved solutes.
non-saline aerosol environment
An environmental system determined by part of a living or dead plant, or a whole small plant.
environment associated with a plant part or small plant
A lake contained within a crater.
crater lake
A lake contained within a crater.
MA:ma
https://en.wikipedia.org/wiki/Crater_lake
An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.
meteoroid
An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.
https://en.wikipedia.org/wiki/Meteoroid
A material which is composed primarily of one or more pure metals and which shows their properties.
metal
metallic material
A material which is composed primarily of one or more pure metals and which shows their properties.
https://en.wikipedia.org/wiki/Metal
A process during which microscopic solid or liquid objects are formed.
particle formation
particulate matter formation process
A process during which microscopic solid or liquid objects are formed.
https://en.wikipedia.org/wiki/Particulates
An aerosol formation process which occurs in an atmosphere.
atmospheric aerosol formation
atmospheric aerosol formation
An aerosol formation process which occurs in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere.
formation of solid particles in an atmosphere
formation of a solid aerosol in an atmosphere
A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.
formation of liquid droplets in an atmosphere
formation of liquid particles in an atmosphere
formation of a liquid aerosol in an atmosphere
A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.
liquid aerosol
aerosolised liquids
An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.
https://en.wikipedia.org/wiki/Aerosol
An aerosol which has non-gaseous parts that are primarily composed of solid particles.
solid aerosol
aerosolised solids
An aerosol which has non-gaseous parts that are primarily composed of solid particles.
https://en.wikipedia.org/wiki/Aerosol
A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere.
atmospheric formation of a solid aerosol
formation of a solid aerosol in an atmosphere
formation of a solid aerosol in the atmosphere
formation of solid particles from gaseous material in an atmosphere
formation of a solid aerosol from gaseous material in an atmosphere
A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.
atmospheric formation of a liquid aerosol
formation of a liquid aerosol in an atmosphere
formation of a liquid aerosol in the atmosphere
formation of liquid droplets from gaseous material in an atmosphere
formation of liquid particles from gaseous material in an atmosphere
formation of a liquid aerosol from gaseous material in an atmosphere
A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
A process during which pieces of a planetary crust and uppermost mantle move.
tectonic movement
A process during which pieces of a planetary crust and uppermost mantle move.
https://en.wikipedia.org/wiki/Plate_tectonics
https://en.wikipedia.org/wiki/List_of_tectonic_plates
A part of a lithosphere which is separated by other such parts by geographic faults or similar geomorphological discontinuities.
tectonic plate
A part of a lithosphere which is separated by other such parts by geographic faults or similar geomorphological discontinuities.
https://en.wikipedia.org/wiki/List_of_tectonic_plates
2
A geomorphological feature which is formed where two or more tectonic plates move towards, away from, or along one another, resulting in deformation of the lithosphere.
tectonic plate boundary
A geomorphological feature which is formed where two or more tectonic plates move towards, away from, or along one another, resulting in deformation of the lithosphere.
https://en.wikipedia.org/wiki/Plate_tectonics
An environmental system which includes both living and non-living components.
ecosystem
An environmental system which includes both living and non-living components.
https://en.wikipedia.org/wiki/Ecosystem
A physical space, which may or may not be in a construction, which is used to store animal manure for agricultural purposes.
manure storage
manure storage space
A physical space, which may or may not be in a construction, which is used to store animal manure for agricultural purposes.
http://orcid.org/0000-0002-8844-9165
Manure which has been collected directly or indirectly from dairy cattle, as from flushing of manure from concrete feed lanes, free stalls, and milking facilities.
bovine dairy liquid manure
Manure which has been collected directly or indirectly from dairy cattle, as from flushing of manure from concrete feed lanes, free stalls, and milking facilities.
http://manuremanagement.ucdavis.edu/files/134369.pdf
http://orcid.org/0000-0002-8844-9165
A product which is composed primarily of animal manure that has been heat treated and packaged as a product for commercial or consumer use.
animal manure product
A product which is composed primarily of animal manure that has been heat treated and packaged as a product for commercial or consumer use.
http://orcid.org/0000-0002-8844-9165
A planet which is primarily composed of hydrogen and helium.
gas planet
A planet which is primarily composed of hydrogen and helium.
http://solarsystem.nasa.gov/planets/whatisaplanet
https://en.wikipedia.org/wiki/List_of_planet_types
https://en.wikipedia.org/wiki/Planet
An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure.
ice
https://github.com/EnvironmentOntology/envo/issues/900
A terrestrial planet which has a surface dominated by hot deserts.
dry planet
desert planet
A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.
aquaplanet
panthalassic planet
water world
ocean planet
A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.
https://en.wikipedia.org/wiki/Ocean_planet
A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.
cryoplanet
ice planet
A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.
https://en.wikipedia.org/wiki/Ice_planet
Ice which is primarily composed of carbon dioxide.
dry ice
carbon dioxide ice
Ice which is primarily composed of carbon dioxide.
https://en.wikipedia.org/wiki/Ice
Ice which is primarily composed of carbon monoxide.
carbon monoxide ice
Ice which is primarily composed of carbon monoxide.
https://en.wikipedia.org/wiki/Ice
A gas planet which has an atmosphere composed primarily of helium.
helium planet
A gas planet which has an atmosphere composed primarily of helium.
https://en.wikipedia.org/wiki/Helium_planet
A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.
volatile
volatile astrogeological material
A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.
https://en.wikipedia.org/wiki/Volatiles
An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.
gas
astrogeological gas
An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.
https://en.wikipedia.org/wiki/Volatiles
A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
geodiversity
A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
https://en.wikipedia.org/wiki/Geodiversity
A process during which an ecosystem, its parts, or the processes it participates in are modified by human intervention to accomplish an objective.
ecosystem management
Umweltmaßnahme
environmental management
active ecosystem management process
A process during which an ecosystem, its parts, or the processes it participates in are modified by human intervention to accomplish an objective.
https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-iv-habitatspecies-management-area
Umweltmaßnahme
https://orcid.org/0000-0002-9620-2832
www.awi.de/internas
An environment which has its properties and composition largely determined by the presence of a metazoan which lacks a vetebral column and which has a habitat that is found in an aquatic environmental system.
environment associated with an aquatic invertebrate
The surface layer of a volume of water.
surface of a body of water
water body surface
water surface
The surface layer of a mass of sediment.
surface of a sedimentary mass
surface sediment
sediment surface
An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it.
terrestrial environmental zone
A terrestrial zone which is bounded by constructed, manufactured, or other anthropogenic material entities.
anthropised terrestrial environmental zone
An environmental zone which is bounded by material parts of a marine environment.
marine environmental zone
A process during which sediments compact under pressure, expel connate fluids, and gradually become solid sedimentary rock.
lithification
A process during which sediments compact under pressure, expel connate fluids, and gradually become solid sedimentary rock.
https://en.wikipedia.org/wiki/Lithification
An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics.
GRASSLAND
grassland
Grassland
down
downland
downs
glade
grazing area
herbaceous area
grassland ecosystem
An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics.
https://en.wikipedia.org/wiki/Grassland
GRASSLAND
USGS:SDTS
grassland
Geonames:feature
Grassland
NASA:earthrealm
down
USGS:SDTS
downland
USGS:SDTS
downs
USGS:SDTS
glade
ADL:FTT
glade
USGS:SDTS
grazing area
ADL:FTT
grazing area
Getty:TGN
herbaceous area
USGS:SDTS
An area of land used for the herding and grazing of livestock.
ranch
ranch
An area of land used for the herding and grazing of livestock.
USGS:SDTS
ranch
Geonames:feature
ranch
USGS:SDTS
A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
WETLAND
Wetland
EstuarineWetland
LacustrineWetland
MarineWetland
PalustrineWetland
RiparianWetland
TerrestialWetland
back marsh
backswamp
backwater
barrier flat
blanket bog
bog
cienaga
dismal
everglade
floating marsh
forested wetland
marsh
mire
mud flat
peat cutting area
peatland
quagmire
quaking bog
riparian area
slash
slough
slue
swamp forest
tulelands
moor
morass
muskeg
wetland ecosystem
A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
https://en.wikipedia.org/wiki/Wetland
WETLAND
USGS:SDTS
Wetland
NASA:earthrealm
EstuarineWetland
NASA:earthrealm
LacustrineWetland
NASA:earthrealm
MarineWetland
NASA:earthrealm
PalustrineWetland
NASA:earthrealm
RiparianWetland
NASA:earthrealm
TerrestialWetland
NASA:earthrealm
back marsh
USGS:SDTS
backswamp
USGS:SDTS
backwater
ADL:FTT
barrier flat
USGS:SDTS
blanket bog
USGS:SDTS
bog
ADL:FTT
bog
Getty:TGN
cienaga
ADL:FTT
dismal
USGS:SDTS
everglade
USGS:SDTS
floating marsh
USGS:SDTS
forested wetland
ADL:FTT
marsh
ADL:FTT
mire
ADL:FTT
mire
USGS:SDTS
mud flat
ADL:FTT
peat cutting area
ADL:FTT
peatland
ADL:FTT
quagmire
ADL:FTT
quagmire
USGS:SDTS
quaking bog
USGS:SDTS
riparian area
ADL:FTT
slash
USGS:SDTS
slough
ADL:FTT
slough
Getty:TGN
slough
USGS:SDTS
slue
ADL:FTT
swamp forest
USGS:SDTS
tulelands
USGS:SDTS
moor
USGS:SDTS
morass
USGS:SDTS
muskeg
USGS:SDTS
An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.
solar radiation
stellar radiation
An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.
https://en.wikipedia.org/wiki/Electromagnetic_radiation
https://en.wikipedia.org/wiki/Solar_irradiance
solar radiation
NCIT:C44445
A natural environment which is located on a land mass.
terrestrial natural environment
A natural environment which is within a water body.
aquatic natural environment
forest canopy
A vegetation layer which is formed by a collection of individual plant crowns, themselves constituting part of the aboveground portion of a plant community.
canopy
A vegetation layer which is formed by a collection of individual plant crowns, themselves constituting part of the aboveground portion of a plant community.
https://en.wikipedia.org/wiki/Canopy_%28biology%29
An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover.
forest ecosystem
An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover.
http://www.fao.org/docrep/017/ap862e/ap862e00.pdf
https://www1.usgs.gov/csas/nvcs/nvcsGetUnitDetails?elementGlobalId=860217
An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement.
cropland ecosystem
An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement.
A process during which humans rear animals or plants on land for harvest and consumption.
agriculture
agricultural process
A process during which humans rear animals or plants on land for harvest and consumption.
http://www.fao.org/docrep/003/x6941e/x6941e04.htm#bm04
A layer which is primarily composed of some liquid material.
liquid layer
A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.
solid layer
A solid layer which is primarily composed of some water-based ice.
water ice layer
A fire which occurs in an industrial area or building.
industrial fire
A vegetated area which has not been cleared or is sparsely settled, usually scrub-covered or forested
the bush
bush area
A vegetated area which has not been cleared or is sparsely settled, usually scrub-covered or forested
https://www.merriam-webster.com/dictionary/bush#h1
An environmental zone which is part of an atmosphere.
atmospheric area
atmospheric zone
An oasis is a vegetated area located in a desert, supplied with water from a water source which it surrounds, and surrounded by arid soil, sand, or rock.
cienaga
oasis
A vegetated area is a geographic feature which has ground cover dominated by plant communities.
vegetated area
A geographic feature which is primarily composed of a continuous volume of liquid water held in shape or sustained by an environmental process.
hydroform
A liquid surface layer which is in contact with air.
liquid air-water interface layer
A surface layer which is composed primarily of some liquid.
liquid surface layer
A surface layer which is composed primarily of solid environmental material.
solid surface layer
A body of water which is primarily composed of saline water.
saline body of water
saline water body
A body of water which is primarily composed of freshwater, with low solute content.
fresh body of water
freshwater body
fresh water body
A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
advective transport
advective transport process
A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
https://en.wikipedia.org/wiki/Advection
https://en.wikipedia.org/wiki/Intensive_and_extensive_properties
An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
erosion
An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
https://en.wikipedia.org/wiki/Erosion
A landform which has been rendered barren or partially barren by environmental extremes, especially by low rainfall.
desert
A direction which inheres in an atmospheric wind, typically expressed as the inverse of the direction the wind is moving in.
atmospheric wind direction
A direction which inheres in an atmospheric wind, typically expressed as the inverse of the direction the wind is moving in.
http://en.wikipedia.org/wiki/Wind_direction
The speed of an atmospheric wind.
flow velocity of wind
speed of wind
wind flow velocity
wind speed
speed of atmospheric wind
atmospheric wind speed
The speed of an atmospheric wind.
http://en.wikipedia.org/wiki/Wind_speed
The volume of water which has fallen during a precipitation process.
Niederschlagsmenge
precipitation amount
precipitation
precipitation level
precipitation quantity
volume of hydrological precipitation
The volume of water which has fallen during a precipitation process.
http://de.wikipedia.org/wiki/Niederschlag#Niederschlagsmenge
A process during which particles suspended in a gaseous medium are formed.
new particle formation process
aerosolised particle formation process
A process during which particles suspended in a gaseous medium are formed.
https://en.wikipedia.org/wiki/Aerosol
https://en.wikipedia.org/wiki/Particulates
A material transport process during which solid or liquid particles are directly introduced into a volume of gas.
primary aerosol formation
primary aerosol formation process
A material transport process during which solid or liquid particles are directly introduced into a volume of gas.
https://en.wikipedia.org/wiki/Aerosol
https://en.wikipedia.org/wiki/Particulates
An ecosystem which 1) typically has monthly average temperatures below 10 degrees Celsius 2) has a low evapotranspiration ratio 3) is dominated by treeless terrain, covered by communities of low-growing vegetation such as dwarf shrubs, sedges and grasses, mosses, and lichens, 4) contains areas of soil underlain by permafrost with a thin active layer and 5) occurs in both polar and alpine regions (i.e., both high latitudes and high altitudes), and 5) does not have permanent snow or ice cover.
tundra ecosystem
An ecosystem which 1) typically has monthly average temperatures below 10 degrees Celsius 2) has a low evapotranspiration ratio 3) is dominated by treeless terrain, covered by communities of low-growing vegetation such as dwarf shrubs, sedges and grasses, mosses, and lichens, 4) contains areas of soil underlain by permafrost with a thin active layer and 5) occurs in both polar and alpine regions (i.e., both high latitudes and high altitudes), and 5) does not have permanent snow or ice cover.
This definition is a synthesis of the following sources: NSIDC Glossary accessed 2016, IPCC WGII AR5 2014, Van Everdingen International Permafrost Association 2005, AMS - glossary of meteorology, PhysicalGeography.net
A soil which has high mineral content and which contain no calcareous material, have less than 10% weatherable minerals its surface layer, and have less than 35% base saturation throughout its volume.
red clay soil
ultisol
A soil which has high mineral content and which contain no calcareous material, have less than 10% weatherable minerals its surface layer, and have less than 35% base saturation throughout its volume.
https://en.wikipedia.org/wiki/Ultisol
An anthropisation process during which terrestrial environments - natural or anthropised - or parts thereof are altered to facilitate human activities such as agriculture, settlement, or commerce.
land conversion
land development
land conversion process
An anthropisation process during which terrestrial environments - natural or anthropised - or parts thereof are altered to facilitate human activities such as agriculture, settlement, or commerce.
https://en.wikipedia.org/wiki/Land_development
A land conversion process during which terrestrial ecosystems are altered to facilitate agricultural activities such as crop cultivation or the rearing of livestock.
agricultural land conversion
agricultural land conversion process
A land conversion process during which terrestrial ecosystems are altered to facilitate agricultural activities such as crop cultivation or the rearing of livestock.
https://en.wikipedia.org/wiki/Land_development
An anthropogenic environmental process which includes all human activities undertaken in a natural, semi-natural, or anthropised environment.
land use process
An anthropogenic environmental process which includes all human activities undertaken in a natural, semi-natural, or anthropised environment.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
A process during which an ecosystem - natural or anthropised - is changed by the actions of humans.
anthropogenic ecosystem conversion process
A planned process during which humans access and obtain resources, benefits, or services from a natural or anthropised ecosystem.
planned environmental usage process
A planned environmental usage process during which an environment supports manufacturing facilities producing commodities that are sold with the expectation of recovering the total cost of production.
usage of an environment for industry
A planned environmental usage process during which an environment supports manufacturing facilities producing commodities that are sold with the expectation of recovering the total cost of production.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
https://www.eionet.europa.eu/gemet/en/concept/4279
body of liquid
A part of an astronomical body which is primarily composed of a continuous volume of liquid material, shaped by one or more environmental processes.
liquid astronomical body part
A part of an astronomical body which is primarily composed of a continuous volume of liquid material, shaped by one or more environmental processes.
https://en.wikipedia.org/wiki/Landform
A part of an astronomical body which is primarily composed of a continuous volume of gaseous material, shaped by one or more environmental processes.
gaseous astronomical body part
A part of an astronomical body which is primarily composed of a continuous volume of gaseous material, shaped by one or more environmental processes.
https://en.wikipedia.org/wiki/Landform
A part of an astronomical body which is primarily composed of a continuous volume of liquid or gaseous material, shaped by one or more environmental processes.
fluid astronomical body part
A part of an astronomical body which is primarily composed of a continuous volume of liquid or gaseous material, shaped by one or more environmental processes.
https://en.wikipedia.org/wiki/Landform
A surface layer where the solid or liquid material of an astronomical body comes into contact with an atmosphere or outer space.
surface of an astronomical body
An elevation which is flattened across its highest surface.
flattened elevation
An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.
anthropogenic radiation
artificial radiation
radiation from a manufactured product
An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.
https://en.wikipedia.org/wiki/Electromagnetic_radiation
https://en.wikipedia.org/wiki/Solar_irradiance
A material transformation process during which a material's viscosity increase either through a reduction in temperature, through chemical reactions, or other physical effects.
congelation
congelation process
material congelation process
A material transformation process during which a material's viscosity increase either through a reduction in temperature, through chemical reactions, or other physical effects.
https://en.wikipedia.org/wiki/Congelation
Land which is below the freezing point of water.
frozen ground
frozen land
Land which is below the freezing point of water.
https://orcid.org/0000-0003-4808-4736
Soil which is below the freezing point of water.
frozen soil
A material congelation process during which a liquid turns into a solid when its temperature is lowered below its melting point.
freezing
A material congelation process during which a liquid turns into a solid when its temperature is lowered below its melting point.
https://en.wikipedia.org/wiki/Freezing
A freezing process during which liquid water is transformed into water ice.
freezing of water into water ice
A water surface that is part of a water body.
surface layer of a water body
An ecoregion which is located on a landmass.
terrestrial ecoregion
A surface layer which is part of an ocean or sea.
sea surface layer
A layer which is part of a cryosphere.
cryospheric layer
Permafrost which contains inclusions of water-based ice.
ice-bearing permafrost
A material accumulation process during which the mass of snow on a surface increases.
snow accumulation process
A material accumulation process during which the mass of snow on a surface increases.
A material accumulation process during which ice forms in an environmental material or an existing accumulation of ice increases in mass.
ice accumulation process
A material accumulation process during which ice forms in an environmental material or an existing accumulation of ice increases in mass.
A material accumulation process during which a accumulation of snow and ice forms or increases in mass.
snow and ice accumulation process
A material accumulation process during which a accumulation of snow and ice forms or increases in mass.
A object which is composed primarily of water-based snow and ice.
mass of ice and snow
A process during which microscopic solid particulates are formed from liquid materials in an atmosphere.
atmospheric formation of a solid aerosol
formation of a solid aerosol in an atmosphere
formation of a solid aerosol in the atmosphere
formation of solid particles from liquid material in an atmosphere
formation of a solid aerosol from liquid material in an atmosphere
A process during which microscopic solid particulates are formed from liquid materials in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
That part of an atmosphere which is composed of gaseous material.
gaseous part of an atmosphere
A solid material which does not have a regularly organised internal structure.
amorphous solid
An aerosol that is suspended in an atmosphere.
atmospheric aerosol
A material transformation process during which solid or liquid particles form and are suspended in a mass of air, thus creating an aerosol.
aerosol formation process
A surface layer which is composed primarily of some liquid or gas.
fluid surface layer
A surface layer which separates two portions of fluid with respect to either 1) a discontinuity of some fluid property or 2) some derivative of one of these properties in a direction normal to the interface.
fluid interface layer
A surface layer which separates two portions of fluid with respect to either 1) a discontinuity of some fluid property or 2) some derivative of one of these properties in a direction normal to the interface.
A layer which is composed primarily of some fluid.
fluid layer
A fluid interface which separates two fluid masses with differing properties.
fluid front
A fluid interface which separates two fluid masses with differing properties.
A fluid front which is composed primarily of gaseous material and separates at least two gaseous masses.
gaseous front
2
A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.
meteorological front
weather front
A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.
An object which is composed of a continuous mass of air.
air mass
A fluid surface layer which is composed primarily of some gaseous material.
gaseous surface layer
A layer which separates two portions of environmental material which possess 1) differing compositions, 2) a discontinuity of some property, or 3) some derivative of some property in a direction normal to the interface.
interface layer
An object which is composed primarily of an environmental material
mass of environmental material
An object which is composed primarily of a solid environmental material
mass of solid material
An object which is composed primarily of a fluid.
fluid mass
mass of fluid
An object which is composed primarily of a gas.
gaseous mass
mass of gas
An object which is composed primarily of a liquid.
liquid mass
mass of liquid
2
An mass of environmental materials which has appreciable quantities of several individual materials, such that the removal of one would convert the mass into a different entity.
mass of compounded environmental materials
A weather front which separates air masses of tropical and polar origin.
polar front
A weather front which separates air masses of tropical and polar origin.
An environment which has a climate with continually high temperatures and with considerable precipitation, at least during part of the year.
tropical environment
An environment which has a climate with continually high temperatures and with considerable precipitation, at least during part of the year.
An environment which has a climate with warm temperatures and with meagre precipitation.
subtropical environment
An environment which has a climate with warm temperatures and with meagre precipitation.
mass fluid flow
An environmental zone which includes those regions of an astronomical body which are not exposed to its atmosphere or space.
subsurface zone of an astronomical body
An ecosystem in which the composition, structure, and function of resident ecological assemblages are primarily determined by a desert.
desert ecosystem
A solid astronomical body part which is part of the landmass of that body.
part of a landmass
A large continuous area of land, either surrounded by sea or contiguous with another landmass.
landmass
A large continuous area of land, either surrounded by sea or contiguous with another landmass.
A part of an astronomical body which is primarily composed of a continuous medium bearing liquid, gaseous, and solid material in varying quantities.
compound astronomical body part
A part of an astronomical body which is primarily composed of a continuous medium bearing liquid, gaseous, and solid material in varying quantities.
https://en.wikipedia.org/wiki/Landform
A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
land
A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
aquatic ecosystem
marine ecosystem
freshwater ecosystem
terrestrial ecosystem
An environmental process either driven by or primarily impacting the parts or emergent properties of an ecosystem.
ecosystem process
A forest ecosystem which is subject to tropical climate conditions.
tropical forest
A forest ecosystem which is subject to subtropical climate conditions.
subtropical forest
A grassland ecosystem which is subject to tropical climatic conditions.
tropical grassland
A grassland which is subject to subtropical climatic conditions.
subtropical grassland
A material entity which has been assembled through the intentional, instinctual, or deliberately programmed efforts of an organism or machine.
construction
A biome which is subject to tropical climatic conditions.
tropical biome
A biome which is subject to subtropical climatic conditions.
subtropical biome
A biome which is subject to alpine altitudinal conditions.
alpine biome
A biome which is subject to montane altitudinal conditions.
montane biome
A biome which is subject to arid environmental conditions.
arid biome
A process during which one entity loses energy to another entity.
energy transfer process
A material accumulation process during which the volume of liquid entity increases.
liquid accumulation process
A temperature of air at which air become saturated with water vapour and below which airborne water vapour will condense to form liquid water (dew).
dew point
A temperature of air at which air become saturated with water vapour and below which airborne water vapour will condense to form liquid water (dew).
Electromagnetic radidation which involves radiant energy in a spectral range (wave band) between 400 to 700 nanometers, that photosynthetic organisms are able to use in the process of photosynthesis.
photosynthetically active radiation
Electromagnetic radidation which involves radiant energy in a spectral range (wave band) between 400 to 700 nanometers, that photosynthetic organisms are able to use in the process of photosynthesis.
The concentration of carbon dioxide when measured in air that is part of an atmosphere.
concentration of carbon dioxide in an atmosphere
A depression in the ground resembling a hole or cavity, either natural or anthropogenic.
pit
A depression in the ground resembling a hole or cavity, either natural or anthropogenic.
A pit which is used for the collection and storage of manure.
manure pit
A pit which is used for the collection and storage of manure.
Coastal water is a marine water body bordering a coast.
coastal water body
Coastal water is a marine water body bordering a coast.
https://en.wikipedia.org/wiki/Coastal
A mixture of crushed and coarsely ground bones that is used as an organic fertilizer for plants and formerly in animal feed.
bone meal
A mixture of crushed and coarsely ground bones that is used as an organic fertilizer for plants and formerly in animal feed.
https://en.wikipedia.org/wiki/Bone_meal
Food material which can be used to meet nutritional requirements of plants.
plant feed
Dust which is derived from mineral material.
mineral dust
Dust which is composed primarily of some metallic material.
metallic dust
Dust which is derived from clay material.
clay dust
dust from plant parts
A liquid or a gas.
fluid
fluid environmental material
A liquid or a gas.
https://github.com/EnvironmentOntology/envo/issues/940
A process in which includes the components of an environmental system as participants.
environmental system process
A type of land degradation in which terrestrial ecosystem becomes increasingly dry, typically losing its bodies of water as well as vegetation and wildlife.
desertification
A type of land degradation in which terrestrial ecosystem becomes increasingly dry, typically losing its bodies of water as well as vegetation and wildlife.
A general and temporary condition of partial or complete inundation of normally dry land areas from the overflow of inland and/or tidal waters, and/or the unusual and rapid accumulation or runoff of surface waters from any source. A great flow along a watercourse or a flow causing inundation of lands not normally covered by water.
flooding
A general and temporary condition of partial or complete inundation of normally dry land areas from the overflow of inland and/or tidal waters, and/or the unusual and rapid accumulation or runoff of surface waters from any source. A great flow along a watercourse or a flow causing inundation of lands not normally covered by water.
GEMET: http://www.eionet.europa.eu/gemet/concept/3301
A process which occurs within an atmosphere.
atmospheric process
A process which diminishes the functioning of an ecosystem located on land.
land degradation
A process which diminishes the functioning of an ecosystem located on land.
http://www.who.int/globalchange/ecosystems/desert/en/
https://en.wikipedia.org/wiki/Land_degradation
forest process
A process during which humans apply technology to alter the magnitude, duration, rate, or impact of an environmental process.
anthropogenic modulatory intervention process
An environmental process which is driven by the action of humans.
anthropogenic environmental process
An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.
planetary erosion
An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.
https://en.wikipedia.org/wiki/Erosion
An environmental process which has water - in any of its states - as a participant.
hydrological process
Evapotranspiration is the sum of evaporation and plant transpiration from the Earth's land and ocean surface to the atmosphere.
evapotranspiration
Evapotranspiration is the sum of evaporation and plant transpiration from the Earth's land and ocean surface to the atmosphere.
https://en.wikipedia.org/wiki/Evapotranspiration
Evaporation is a form of vaporisation which occurs when a portion of the surface layer of a liquid in contact with a gaseous material, which is not saturated with the evaporating substance, vaporises.
evaporation
Evaporation is a form of vaporisation which occurs when a portion of the surface layer of a liquid in contact with a gaseous material, which is not saturated with the evaporating substance, vaporises.
https://en.wikipedia.org/wiki/Evaporation
Transpiration is the process of water movement through a plant and its evaporation from aerial parts of that plant, such as from leaves but also from stems and flowers.
transpiration
A physical process during which atoms, molecules, or other consituents of a material entity are forced closer together.
compaction process
A physical process during which atoms, molecules, or other consituents of a material entity are forced closer together.
https://en.wikipedia.org/wiki/Compaction
A process during which the mass of one or more materials, present within a given site, increases.
material accumulation process
A process during which material is displaced from its original location and transported either to a new location or back to the original location.
material transport process
A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed.
geographic basin
A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed.
https://en.wikipedia.org/wiki/Basin
A material transport process during which one or more environmental materials are transported by the action of wind.
eolian
æolian
aeolian transport process
A material transport process during which one or more environmental materials are transported by the action of wind.
https://en.wikipedia.org/wiki/Aeolian_processes
Sediment which has been transported through the marine water column, settling on the seafloor.
marine sediments
marine sediment
Sediment which has been transported through the marine water column, settling on the seafloor.
https://en.wikipedia.org/wiki/Pelagic_sediment#_note-8
A material accumulation process during which solid particles are pulled through a water body by gravitation or centrifugal force and which ends when they settle on a solid surface.
sedimentation in a water body
A process during which a portion of some environmental material is converted into a different material or a collection of materials.
material transformation process
A desublimation process during which water vapour is frozen into water ice.
desublimation of water vapour into ice
A one-dimensional temporal region which is delimited by the occurrence of processes which serve as its delimiters.
season
A geographic feature which is primarily composed of a continuous mass of snow and/or ice.
cryoform
A mass of snow.
accumulation of snow
snow accumulation
snow mass
A structure which traverses a mass of one or more environmental materials, and encloses a roughly tubular site.
channel
A structure which traverses a mass of one or more environmental materials, and encloses a roughly tubular site.
https://www.merriam-webster.com/dictionary/channel
The concentration of nitrate and nitrite when measured in liquid water.
liquid water nitrate and nitrite concentration
concentration of nitrate and nitrite in liquid water
A season during which changes in atmospheric circulation associated with the asymmetric heating of land and sea cause moisture to be brought inland by monsoon winds, leading to increased rainfall as moisture-laden air rises and cools over land.
monsoon season
A season during which changes in atmospheric circulation associated with the asymmetric heating of land and sea cause moisture to be brought inland by monsoon winds, leading to increased rainfall as moisture-laden air rises and cools over land.
https://en.wikipedia.org/wiki/Monsoon
A water ice crystal which is constituted by water molecules aligned in a hexagonal array.
snowflake
snow crystal
A water ice crystal which is constituted by water molecules aligned in a hexagonal array.
snowflake
Snow crystals and snowflakes are often noted as synonyms, however, the term "snowflake" is generally used more loosely. Some sites mention that snow crystals refer to individual crystals of ice, while the term "snowflake" can refer both to an individual crystal of ice and to a bundle of snow crystals. Please see here [https://github.com/EnvironmentOntology/envo/issues/998#issuecomment-685649444]
Sediment which contains some chemical contaminant.
chemically contaminated sediment
Sediment which contains some chemical contaminant.
A soil horizon which is composed primarily of organic matter.
soil organic layer
organic surface layer
organic horizon
A soil horizon which is composed primarily of organic matter.
A layer which is parallel to the soil surface and which has roughly homogenous physical, chemical and biological properties relative to the soil layers above or beneath it.
soil horizon
A layer which is parallel to the soil surface and which has roughly homogenous physical, chemical and biological properties relative to the soil layers above or beneath it.
The concentration of carbon dioxide when measured in soil.
concentration of carbon dioxide in soil
The concentration of carbon dioxide when measured in air.
concentration of carbon dioxide in air
The concentration of carbon dioxide when measured in freshwater.
concentration of carbon dioxide in freshwater
The concentration of carbon dioxide when measured in seawater.
concentration of carbon dioxide in seawater
Organic material in soil, which consists of plant and animal residues at various stages of decomposition, cells and tissues of soil organisms, and substances synthesized by soil organisms.
soil organic matter
Organic material in soil, which consists of plant and animal residues at various stages of decomposition, cells and tissues of soil organisms, and substances synthesized by soil organisms.
https://en.wikipedia.org/wiki/Soil_organic_matter
A surface layer which is composed primarily of soil.
soil surface layer
A material accumulation process during which atmospheric carbon dioxide is captured and stored.
carbon sequestration process
A material accumulation process during which atmospheric carbon dioxide is captured and stored.
https://www.usgs.gov/faqs/what-carbon-sequestration?qt-news_science_products=0#qt-news_science_products
The temperature of some environmental material.
environmental material temperature
temperature of environmental material
The temperature of some air.
air temperature
temperature of air
The intensity of a atmospheric wind.
intensity of atmospheric wind
atmospheric wind intensity
The porosity of some soil.
soil porosity
porosity of soil
The mass density of some soil.
soil mass density
mass density of soil
The concentration of a ammonium when measured in soil.
soil ammonium concentration
concentration of ammonium in soil
The concentration of a nitrate when measured in soil.
soil nitrate concentration
concentration of nitrate in soil
The composition of some soil.
soil composition
composition of soil
The structure of some soil.
soil structure
structure of soil
The acidity of some soil.
soil acidity
acidity of soil
The temperature of some soil.
soil temperature
temperature of soil
The wetness of some soil.
soil wetness
wetness of soil
The temperature of some water.
water temperature
temperature of water
The humidity of some soil.
soil humidity
humidity of soil
The conductivity of some soil.
soil conductivity
conductivity of soil
The composition of some water.
water composition
composition of water
The conductivity of some water.
water conductivity
conductivity of water
The concentration of a nitrate when measured in groundwater.
ground water nitrate concentration
groundwater nitrate concentration
concentration of nitrate in groundwater
A hydrological precipitation process with a reduced rate relative to some historical average, typically resulting in ecosystemic perturbations.
drought
A process which results in the formation of an island.
island formation process
A wastewater treatment plant that treats agriculatural wastewater. Agricultural wastewater treatment relates to the treatment of wastewaters produced in the course of agricultural activities. Agriculture is a highly intensified industry in many parts of the world, producing a range of wastewaters requiring a variety of treatment technologies and management practices.
agricultural wastewater treatment plant
A wastewater treatment plant that treats agriculatural wastewater. Agricultural wastewater treatment relates to the treatment of wastewaters produced in the course of agricultural activities. Agriculture is a highly intensified industry in many parts of the world, producing a range of wastewaters requiring a variety of treatment technologies and management practices.
https://en.wikipedia.org/wiki/Agricultural_wastewater_treatment
charcoal that is used as a soil amendment.
biochar
charcoal that is used as a soil amendment.
https://en.wikipedia.org/wiki/Biochar
hydrocarbon-based environmental material
An environment which is determined by an anatomical entity.
anatomical entity environment
integumental system environment
The concentration of ammonium when measured in liquid water.
liquid water ammonium concentration
concentration of ammonium in liquid water
The concentration of dioxygen when measured in liquid water.
liquid water dioxygen concentration
concentration of dioxygen in liquid water
The concentration of hydrogen sulfide when measured in liquid water.
liquid water hydrogen sulfide concentration
concentration of hydrogen sulfide in liquid water
The concentration of nitrate when measured in liquid water.
liquid water nitrate concentration
concentration of nitrate in liquid water
The concentration of nitrite when measured in liquid water.
liquid water nitrite concentration
concentration of nitrite in liquid water
The acidity of some water.
water acidity
acidity of water
A substance, usually composed primarily of carbohydrates, fats, water and/or proteins, that can be eaten or drunk by an animal or human being for nutrition or pleasure.
Food material for humans and animals which is processed with the intention that it be consumable as a whole or added to other food products.
food product
foodon product type
This class includes food products which are derived from or produced by a plant.
plant food product
A relish, sauce, or seasoning added to food to impart a particular flavour or to complement the dish.
condiment
condiment food product
nut food product
plant seed food product
A vegetable product such as leaves, flowers, seeds and roots that is rich in essential oils and aromatic principles. Used mainly a a condiment.
herb and spice
herb or spice
spice or herb
Any plant food product which, typically, is constituted by intact parts from one or more annual plants cultivated as field and garden crops in the open and under glass, and used almost exclusively for food.
vegetable food product
Mature ovary of a plant, with a fleshy part of the carpel that develops with the seed to attract animals for aid in dispersal. Botanically, nuts are considered fruits.
botanical fruit food product
Mature ovary of a plant, with a fleshy part of the carpel that develops with the seed to attract animals for aid in dispersal. Botanically, nuts are considered fruits.
http://eurovoc.europa.eu/drupal/?q=request&uri=http://eurovoc.europa.eu/1115
http://oek1.fao.org/skosmos/agrovoc/en/page/c_3119
http://www.fao.org/pollination/resources/glossary/en/
https://en.wikipedia.org/wiki/Fruit
A one-celled fruit (pod) usually dehiscing down both sutures, and having the seed attached along a ventral suture. (Roubik 1995)
legume
http://purl.obolibrary.org/obo/FOODON_03411254
http://purl.obolibrary.org/obo/FOODON_03411338
legume food product
A bean vegetable food product is a human or animal food product - such as a snap, shell or dry bean product - derived from the fruit pod, seed, or leaf of one of several genera of the flowering plant family Fabaceae.
bean food product
A food product which normally exists as an ingredient to another food product, rather than eaten on its own, and is more complex than a chemical food component.
food component product
food product component
ginger
ginger food product
plant seed vegetable food product
soybean seed (field) food product
A soybean food product is a product derived from the soybean plant.
soy product
soybean food product
A food product consisting of food material derived primarily from a single organism.
food product by organism
Any substance that can be consumed by an organism to satisfy nutritional or other health needs, or to provide a social or organoleptic food experience
food
foodstuff
nourishment
sustenance
food material
Invertebrates are animals that neither possess nor develop a vertebral column (commonly known as a backbone or spine), derived from the notochord. This includes all animals apart from the subphylum Vertebrata.
animal
invertebrate animal
ginger
ginger root
A seed of a bean plant from one of several genera of the flowering plant family (Fabaceae).
bean
bean (whole)
A multicellular eukaryotic heterotrophic organism within the kingdom Animalia.
animal
A food product not including meat and animal tissue products (such as gelatin or animal-derived rennet).
vegetarian food
vegetarian food product
A root of a ginger plant (Zingiber officinale)
elephant ginger
elephant ginger root
ginger
ginger root
ginger root (whole)
A whole ginger root or some substance made from a processed ginger root.
ginger
ginger root
ginger root (whole or parts)
A whole soybean or some substance made from a processed soybean.
soybean
soybean (whole or parts)
A seed of a soyabean plant (Glycine max).
soy bean
soya bean
soybean
soybean (whole)
A bean substance is a substance made by processing seed from a bean plant.
bean substance
A meal that is the by-product of the extraction of soybean oil.
soya bean meal
soybean meal
edible seed food product
soybean substance
ginger root (whole, raw)
A seed of a legume plant in the family Fabaceae.
legume (whole)
Seasoned product that contains multiple ingredients and that is used in limited amounts to accompany other foods; excludes flavors, spices and herbs.
dressing, condiment, gravy or sauce (us cfr)
Aromatic or pungent plant product used whole or ground as a seasoning in food products.
spice or herb (us cfr)
Any form of whole or milled grain, prepared grain product or starch containing product derived from non-grain sources. [FDA CFSAN 1995]
grain or starch product (us cfr)
Product that imparts or helps to impart a taste or aroma in food (21 CFR.170.3(n)(26). [FDA CFSAN 1995]
flavoring or seasoning (us cfr)
Food product prepared by milling a grain or by producing flour, meal or grits from a non-grain source such as beans, starchy roots or tubers. Refined starch is indexed under *REFINED OR PARTIALLY REFINED FOOD PRODUCT*.
milled grain or starch product (us cfr)
Vegetables in all forms except where a use-related product type descriptior (such as *PREPARED FOOD PRODUCT* or *SNACK FOOD*) takes precedence.
vegetable or vegetable product (us cfr)
Food product that is usually pungent, tart, salty, or spicy and is used to enhance the flavors of other foods; includes catsup, relish, prepared mustard, prepared horseradish, and condiment sauces.
condiment or relish (us cfr)
Fruits and vegetables in all forms. [FDA CFSAN 1995]
fruit or vegetable product (us cfr)
Nuts in all forms, including nut butters and pastes.
nut or nut product (us cfr)
Food group having common consumption, functional or manufacturing characteristics, e.g. *FRUIT OR VEGETABLE PRODUCT*, *DAIRY PRODUCT*, *CONFECTIONARY*, *PREPARED FOOD PRODUCT*, etc. [FDA CFSAN 1995]
USA agency food product type
nut or seed product (us cfr)
A food product type is a class of food products that is differentiated by its food composition, processing and/or consumption characteristics. This does not include brand name products but it may include generic food dish categories.
An agency food product type is a class of food product defined by an agency or consortium.
agency food product type
food product type
Food and Drugs, title 21, Code of Federal Regulations. Original food classification in LanguaL.
U.S. code of federal regulations, title 21 food product type
plant used for producing extract or concentrate
oil-producing plant
chemical food product
grain or seed-producing plant
protein-producing plant
vegetable-producing plant, above-ground parts
A legume is a plant or its fruit or seed in the family *Fabaceae* (or *Leguminosae*). Legumes are grown agriculturally, primarily for their grain seed called pulse, for livestock forage and silage, and as soil-enhancing green manure. Well-known legumes include alfalfa, clover, peas, beans, chickpeas, lentils, lupin bean, mesquite, carob, soybeans, peanuts and tamarind. [https://en.wikipedia.org/wiki/Legume]
pod or seed vegetable plant
edible seed producing plant
nut producing plant
A vertebrate animal is any species of organism within the subphylum Vertebrata (chordates with backbones). Vertebrates represent the overwhelming majority of the phylum Chordata, with currently about 69,276 species described.
animal
vertebrate animal
This is a hierarchy of organisms, grouped minimally in a combination of taxonomy and consumer-oriented food groups.
food product organismal source
A bean plant is one of several genera of the flowering plant family Fabaceae, which has seed pods, seeds, and/or leaf material used for human or animal food.
bean plant
vegetable-producing plant
nut or edible seed producing plant
food additive
plant used for dietary supplements
Anatomical part of the plant or animal from which a food product or its major ingredient is derived.
part of organism
seed part
plant seed or nut food product
A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
molecular process
molecular function
molecular_function
A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
GOC:pdt
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
enzyme activity
catalytic activity
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GOC:vw
ISBN:0198506732
enzyme activity
GOC:dph
GOC:tb
receptor activity
Binding to one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
receptor binding
receptor ligand
receptor-associated protein activity
signaling receptor binding
Binding to one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
GOC:bf
GOC:ceb
ISBN:0198506732
Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
GOC:bf
GOC:ceb
ISBN:0198506732
The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
ligand
binding
The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GOC:ceb
GOC:mah
ISBN:0198506732
Binding to a protein.
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
protein amino acid binding
glycoprotein binding
protein binding
Binding to a protein.
GOC:go_curators
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GOC:go_curators
Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
cell communication
Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
GOC:mah
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
signal transduction by cis-phosphorylation
signal transduction by conformational transition
signal transduction by protein phosphorylation
signal transduction by trans-phosphorylation
signaling cascade
signalling cascade
signaling pathway
signalling pathway
signal transduction
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GOC:go_curators
GOC:mtg_signaling_feb11
signalling pathway
GOC:mah
Binds to and increases the activity of an enzyme.
metalloenzyme activator activity
enzyme activator activity
Binds to and increases the activity of an enzyme.
GOC:dph
GOC:mah
GOC:tb
A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
biological process
physiological process
single organism process
single-organism process
biological_process
A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GOC:pdt
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GOC:go_curators
GOC:isa_complete
Any process that modulates the frequency, rate or extent of signal transduction.
regulation of signaling pathway
regulation of signalling pathway
regulation of signal transduction
Any process that modulates the frequency, rate or extent of signal transduction.
GOC:sm
regulation of signalling pathway
GOC:mah
Any process that activates or increases the frequency, rate or extent of signal transduction.
up regulation of signal transduction
up-regulation of signal transduction
upregulation of signal transduction
activation of signal transduction
stimulation of signal transduction
positive regulation of signaling pathway
positive regulation of signalling pathway
positive regulation of signal transduction
Any process that activates or increases the frequency, rate or extent of signal transduction.
GOC:sm
positive regulation of signalling pathway
GOC:mah
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
cell physiology
cellular physiological process
cell growth and/or maintenance
single-organism cellular process
cellular process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
GOC:isa_complete
Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.
regulation of receptor activity
regulation of signalling receptor activity
regulation of signaling receptor activity
Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.
GOC:dph
GOC:tb
Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
regulation of cell communication
Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
GOC:dph
GOC:tb
Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
positive regulation of cell communication
Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
GOC:dph
GOC:tb
true
Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
phosphokinase activity
kinase activity
Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
ISBN:0198506732
Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
transferase activity
Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
ISBN:0198506732
Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
transferase activity, transferring phosphorus-containing groups
Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
GOC:jl
ISBN:0198506732
Any process that modulates the frequency, rate or extent of a signaling process.
regulation of signaling process
regulation of signalling process
regulation of signaling
Any process that modulates the frequency, rate or extent of a signaling process.
GOC:mtg_signal
regulation of signaling process
GOC:bf
regulation of signalling process
GOC:mah
The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
biological signaling
signaling process
signalling
signalling process
single organism signaling
signaling
The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
GOC:mtg_signal
GOC:mtg_signaling_feb11
GOC:signaling
signalling process
GOC:mah
Any process that activates, maintains or increases the frequency, rate or extent of a signaling process.
positive regulation of signalling process
positive regulation of signaling process
positive regulation of signaling
Any process that activates, maintains or increases the frequency, rate or extent of a signaling process.
GOC:mtg_signal
positive regulation of signalling process
GOC:mah
positive regulation of signaling process
GOC:bf
Binds to and modulates the activity of an enzyme.
catalytic regulator activity
enzyme modulator
metalloenzyme regulator activity
enzyme regulator activity
Binds to and modulates the activity of an enzyme.
GOC:dph
GOC:mah
GOC:tb
catalytic regulator activity
GOC:dph
Binds to and modulates the activity of a receptor.
The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.
receptor regulator activity
receptor regulator activity
signaling receptor regulator activity
Binds to and modulates the activity of a receptor.
GOC:ceb
The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.
GOC:ceb
The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.
receptor activator activity
signalling receptor activator activity
signaling receptor activator activity
The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.
GOC:ceb
Any process that activates or increases the frequency, rate or extent of protein binding.
up regulation of protein binding
up-regulation of protein binding
upregulation of protein binding
activation of protein binding
stimulation of protein binding
positive regulation of protein binding
Any process that activates or increases the frequency, rate or extent of protein binding.
GOC:mah
Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
receptor activity
receptor activity involved in signal transduction
signalling receptor activity
signaling receptor activity
Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
GOC:bf
GOC:signaling
receptor activity involved in signal transduction
GOC:bf
Any process that activates or increases the activity of an enzyme.
positive regulation of enzyme activity
up regulation of enzyme activity
up-regulation of enzyme activity
upregulation of enzyme activity
activation of enzyme activity
activation of metalloenzyme activity
positive regulation of metalloenzyme activity
stimulation of enzyme activity
stimulation of metalloenzyme activity
up regulation of metalloenzyme activity
up-regulation of metalloenzyme activity
upregulation of metalloenzyme activity
positive regulation of catalytic activity
Any process that activates or increases the activity of an enzyme.
GOC:ebc
GOC:jl
GOC:tb
GOC:vw
positive regulation of enzyme activity
GOC:tb
Any process that modulates the frequency, rate or extent of protein binding.
regulation of protein binding
Any process that modulates the frequency, rate or extent of protein binding.
GOC:go_curators
Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
positive regulation of molecular function
Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
GO:jl
The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).
receptor agonist activity
signaling molecule
signaling receptor ligand activity
vitamin D receptor activator activity
receptor ligand activity
The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).
GOC:kv
GOC:molecular_function_refactoring
GOC:pdt
receptor agonist activity
GOC:molecular_function_refactoring
Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
positive regulation of physiological process
up regulation of biological process
up-regulation of biological process
upregulation of biological process
activation of biological process
stimulation of biological process
positive regulation of biological process
Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GOC:jid
Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
positive regulation of cellular physiological process
up regulation of cellular process
up-regulation of cellular process
upregulation of cellular process
activation of cellular process
stimulation of cellular process
positive regulation of cellular process
Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:jid
Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
regulation of response to stimulus
Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
GOC:jid
Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
up regulation of response to stimulus
up-regulation of response to stimulus
upregulation of response to stimulus
activation of response to stimulus
stimulation of response to stimulus
positive regulation of response to stimulus
Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
GOC:jid
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
regulation of physiological process
regulation of biological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GOC:ai
GOC:go_curators
Any process that modulates the activity of an enzyme.
regulation of enzyme activity
regulation of metalloenzyme activity
regulation of catalytic activity
Any process that modulates the activity of an enzyme.
GOC:ai
GOC:ebc
GOC:vw
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
regulation of cellular physiological process
regulation of cellular process
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
physiological response to stimulus
response to stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GOC:ai
GOC:bf
Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
regulation of binding
Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
GOC:ai
Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
up regulation of binding
up-regulation of binding
upregulation of binding
activation of binding
stimulation of binding
positive regulation of binding
Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
GOC:ai
Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
transferase regulator
regulation of transferase activity
Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GOC:ai
Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.
transferase activator
up regulation of transferase activity
up-regulation of transferase activity
upregulation of transferase activity
activation of transferase activity
stimulation of transferase activity
positive regulation of transferase activity
Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.
GOC:ai
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
cellular response to stimulus
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
GOC:bf
GOC:jl
A compound molecular function in which an effector function is controlled by one or more regulatory components.
molecular transducer activity
A compound molecular function in which an effector function is controlled by one or more regulatory components.
GOC:dos
GOC:pdt
Any process that modulates a measurable attribute of any biological process, quality or function.
regulation
biological regulation
Any process that modulates a measurable attribute of any biological process, quality or function.
GOC:dph
GOC:isa_complete
GOC:mah
GOC:pr
GOC:vw
Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
regulation of a molecular function
regulation of molecular function
Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
GOC:isa_complete
A molecular function regulator regulates the activity of its target via non-covalent binding that does not result in covalent modification to the target. Examples of molecular function regulators include regulatory subunits of multimeric enzymes and channels. Mechanisms of regulation include allosteric changes in the target and competitive inhibition.
A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.
molecular function regulator
molecular function regulator
molecular function regulator activity
A molecular function regulator regulates the activity of its target via non-covalent binding that does not result in covalent modification to the target. Examples of molecular function regulators include regulatory subunits of multimeric enzymes and channels. Mechanisms of regulation include allosteric changes in the target and competitive inhibition.
GOC:dos
GOC:pt
A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.
GOC:dos
GOC:pt
Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.
regulation of receptor ligand
regulation of receptor binding
Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.
GOC:TermGenie
GOC:signaling
regulation of receptor ligand
GOC:TermGenie
Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.
up regulation of receptor binding
upregulation of receptor binding
activation of receptor binding
positive regulation of receptor binding
Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.
GOC:TermGenie
GOC:signaling
up regulation of receptor binding
GOC:TermGenie
upregulation of receptor binding
GOC:TermGenie
activation of receptor binding
GOC:TermGenie
Any process that activates or increases the frequency, rate or extent of signaling receptor activity.
positive regulation of signalling receptor activity
positive regulation of signaling receptor activity
Any process that activates or increases the frequency, rate or extent of signaling receptor activity.
GOC:obol
conditional specification
A directive information entity that specifies what should happen if the trigger condition is fulfilled.
PlanAndPlannedProcess Branch
OBI branch derived
OBI_0000349
conditional specification
measurement unit label
Examples of measurement unit labels are liters, inches, weight per volume.
A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.
2009-03-16: provenance: a term measurement unit was
proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and
Cristian Cocos, and subsequently moved to IAO where the objective for
which the original term was defined was satisfied with the definition
of this, different, term.
2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
PERSON: Alan Ruttenberg
PERSON: Melanie Courtot
measurement unit label
objective specification
In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.
A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
2009-03-16: original definition when imported from OBI read: "objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed."
2014-03-31: In the example of usage ("In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.
Answers the question, why did you do this experiment?
PERSON: Alan Ruttenberg
PERSON: Barry Smith
PERSON: Bjoern Peters
PERSON: Jennifer Fostel
goal specification
OBI Plan and Planned Process/Roles Branch
OBI_0000217
experiment objective
objective specification
narrative object
Examples of narrative objects are reports, journal articles, and patents submission.
A narrative object is an information content entity that is a set of propositions.
2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion
agree - DENRIE. Issue(alan) do we only mean text? What about a story told by mime. Does music count? (no) what about an oral report. Regarding definition, saying it is a set of propositions means we loose the idea that wording matters. Maybe adjust saying a narrative object has some relationshop to a set of propositions
person:Chris Stoeckert
OBI_0000013
group:OBI
narrative object
Pour the contents of flask 1 into flask 2
A directive information entity that describes an action the bearer will take.
Alan Ruttenberg
OBI Plan and Planned Process branch
action specification
obsolete_artifact
true
datum label
A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label
http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n
GROUP: IAO
9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum.
datum label
software
Software is a plan specification composed of a series of instructions that can be
interpreted by or directly executed by a processing unit.
see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178
PERSON: Alan Ruttenberg
PERSON: Bjoern Peters
PERSON: Chris Stoeckert
PERSON: Melanie Courtot
GROUP: OBI
software
obsolete_digital entity
A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical.
3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
Superclass was 'digitial quality'
person:Chris Stoeckert
OBI_0000261
group:OBI
obsolete2_digital entity
true
journal article
Examples are articles published in the journals, Nature and Science. The content can often be cited by reference to a paper based encoding, e.g. Authors, Title of article, Journal name, date or year of publication, volume and page number.
A report that is published in a journal.
PERSON: Alan Ruttenberg
PERSON: Chris Stoeckert
OBI_0000159
group:OBI
journal article
information carrier
In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case.
A quality of an information bearer that imparts the information content
12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'.
2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it.
PERSON: Alan Ruttenberg
Smith, Ceusters, Ruttenberg, 2000 years of philosophy
information carrier
model number
A model number is an information content entity specifically borne by catalogs, design specifications, advertising materials, inventory systems and similar that is about manufactured objects of the same class. The model number is an alternative term for the class. The manufactered objects may or may not also bear the model number. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.
manufactered items may have more than one model number, sometimes by rebranding, or because companies are sold and the products issued new model numbers
Person: Alan Ruttenberg
model number
obsolete_material_entity
true
binary digital entity
MS Word document, ZIP file, DICOM file, JPEG file
A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text characters.
3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
Superclass was 'digital entity'
digital_entity
person:Chris Stoeckert
OBI_0000244
group:OBI
obsolete2_binary digital entity
true
The length of a ruler.
a unit of measure is the quality of some material entity compared to which another quality is some multiple of.
Alan Ruttenberg
Smith, Ceusters, Ruttenberg, 2000 years of philosophy
obsolete_unit of measure
true
programming language
R, Perl, Java
A language in which source code is written that is intended to be executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it.
person:Alan Ruttenberg
person:Chris Stoeckert
OBI_0000058
group:OBI
programming language
data item
Data items include counts of things, analyte concentrations, and statistical summaries.
An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
JAR: datum -- well, this will be very tricky to define, but maybe some
information-like stuff that might be put into a computer and that is
meant, by someone, to denote and/or to be interpreted by some
process... I would include lists, tables, sentences... I think I might
defer to Barry, or to Brian Cantwell Smith
JAR: A data item is an approximately justified approximately true approximate belief
PERSON: Alan Ruttenberg
PERSON: Chris Stoeckert
PERSON: Jonathan Rees
data
data item
symbol
a serial number such as "12324X"
a stop sign
a written proper name such as "OBI"
An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity.
20091104, MC: this needs work and will most probably change
2014-03-31: We would like to have a deeper analysis of 'mark' and 'sign' in the future (see https://github.com/information-artifact-ontology/IAO/issues/154).
PERSON: James A. Overton
PERSON: Jonathan Rees
based on Oxford English Dictionary
symbol
numeral
A symbol that denotes a number.
PERSON: Jonathan Rees
numeral
information content entity
Examples of information content entites include journal articles, data, graphical layouts, and graphs.
A generically dependent continuant that is about some thing.
2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).
information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).
Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
PERSON: Chris Stoeckert
OBI_0000142
information content entity
integer numeral
A numeral that denotes an integer
PERSON: Jonathan Rees
integer numeral
1
1
10 feet. 3 ml.
A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.
2009-03-16: we decided to keep datum singular in scalar measurement datum, as in
this case we explicitly refer to the singular form
Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them.
PERSON: Alan Ruttenberg
PERSON: Melanie Courtot
scalar measurement datum
An information content entity whose concretizations indicate to their bearer how to realize them in a process.
2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was "is the specification of a process that can be concretized and realized by an actor" with alternative term "instruction".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it.
8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO
Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan
PERSON: Alan Ruttenberg
PERSON: Bjoern Peters
directive information entity
time trigger
PlanAndPlannedProcess Branch
time trigger
obsolete_study interpretation
A study interpretation is a textual entity about the implications of a study result. Examples include discussion of whether a hypothesis is false, whether the study failed to address the hypothesis, and whether the study results have led to new hypotheses
2009-03-16: definition was "A conclusion is a narrative object which can be published in a paper summerizing and interpreting a protocol application."
2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
The obsoleting of narrative object required a modest change in the definition of this term. Circularity with "interpretation... interprets" has been removed, using "about the implications" instead.
Lawrence Hunter
PERSON: Alan Ruttenberg
PERSON: Jennifer Fostel
PERSON: Melanie Courtot
conclusion
OBI_0000005
obsolete_study interpretation
true
dot plot
Dot plot of SSC-H and FSC-H.
A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.
person:Allyson Lister
person:Chris Stoeckert
OBI_0000123
group:OBI
dot plot
graph
A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way.
PERSON: Lawrence Hunter
person:Alan Ruttenberg
person:Allyson Lister
OBI_0000240
group:OBI
graph
text based digital entity
XML file, C++ source code file
A text based digital entity is a digital entity that is encoded so that it only contains text characters.
3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digital document'
digital_entity
person:Chris Stoeckert
OBI_0000132
group:OBI
obsolete2_text based digital entity
true
rule
example to be added
A rule is an executable which guides, defines, restricts actions.
MSI
PRS
OBI_0500021
PRS
rule
contour plot
Contour plot of SSC-H, FSC-H, and FL1-H.
generically_dependent_continuants
person:Allyson Lister
person:Chris Stoeckert
OBI_0000246
group:Flow Cytometry community
contour plot
report figure
A report figure is a report display element that has some aspect of illustration, but may be a composite of figures, images, and other elements
I prepended the 'report ' to make it clear that we mean parts of reports here. We may want a more generic version of 'figure', in which case this would become a defined class - figure and part_of some report
Replaced by defined version of figure
person:Alan Ruttenberg
person:Allyson Lister
OBI_0000027
group:OBI
obsolete2_report figure
true
algorithm
PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies.
A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.
Philippe Rocca-Serra
PlanAndPlannedProcess Branch
OBI_0000270
adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)
algorithm
software interpreter
R program, Perl interpreter, Java virtual machine
A software interpreter is a software application that executes some specified input software.
Do we care? Jennifer: Yes, there was a particular version of R that had a bug and it was fixed later. That would imply that we mean specific version of an interpreter. So an instance of this would be a particular version of the interpreter
person:Alan Ruttenberg
person:Chris Stoeckert
OBI_0000199
group:OBI
software interpreter
curation status specification
The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)
PERSON:Bill Bug
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
OBI_0000266
curation status specification
density plot
Density plot of SSC-H and FSC-H.
A density plot is a report graph which is a graphical representation of data where the tint of a particular pixel corresponds to some kind of function corresponding the the amount of data points relativelly with their distance from the the pixel.
person:Allyson Lister
person:Chris Stoeckert
OBI_0000179
group:Flow Cytometry community
density plot
report
Examples of reports are gene lists and investigation reports. These are not published (journal) articles but may be included in a journal article.
A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record).
2009-03-16: comment from Darren Natale: I am slightly uneasy with the sentence "Topic of the report is on
something that has completed." Should it be restricted to those things
that are completed? For example, a progress report is (usually) about
something that definitely has *not* been completed, or may include
(only) projections. I think the definition would not suffer if the
whole sentence is deleted.
2009-03-16: this was report of results with definition: A report is a narrative object that is a formal statement of the results of an investigation, or of any matter on which definite information is required, made by some person or body instructed or required to do so.
2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'document'. Alan restored as there are OBI dependencies and this merits further discussion
disagreement about where reports go. alan: only some gene lists are reports. Is a report all the content of some document? The example of usage suggests that a report may be part of some article. Term needs clarification
PERSON: Alan Ruttenberg
PERSON: Chris Stoeckert
PERSON: Melanie Courtot
GROUP: OBI
OBI_0000099
report
report element
A report element is a narrative object in which information is presented and consumed by a human being, and is part of a report. Examples of report elements are figure (dot plot), table, text portion (may include a movie or audio clip on a web page).
2009-03-16: needs some more work (clarify relations).
2009-03-16: was report display element with definition: A report display element is a narrative object that is part of a report. Report display elements are set off from the textual parts of a report and are typically given a label(e.g. Figure 2) which is used to refer to the element from the text. Typically the 2d layout is part of the identity of such elements.
2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion
Replaced by textual entity and figure
There will be some issue here about whether these are defined classes. As intended these are meant to denote the parts of the report that are not textual but are typically boxed and set within the text, labelled with some identifier, and referred to in the text
PERSON: Alan Ruttenberg
PERSON: Allyson Lister
PERSON: Melanie Courtot
GROUP:OBI
OBI_0000001
obsolete_report element
true
binary executable
Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions. (derived from Wikipedia, Nov 1, 2007)
3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digital entity'
person:Jennifer Fostel
OBI_0000222
group:OBI
obsolete2_binary executable
true
source code module
The written source code that implements part of an algorithm. Test - if you know that it was written in a specific language, then it can be source code module. We mean here, roughly, the wording of a document such as a perl script.
A source code module is a directive information entity that specifies, using a programming language, some algorithm.
person:Alan Ruttenberg
person:Chris Stoeckert
OBI_0000039
group:OBI
source code module
report table
A report table is a report display element consisting of a matrix of cells layed out in a grid, some set of which are filled with some information content
2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity table'. Alan restored as there are OBI dependencies and this merits further discussion
person:Alan Ruttenberg
person:Allyson Lister
OBI_0000265
group:OBI
obsolete_report table
true
data format specification
A data format specification is the information content borne by the document published defining the specification.
Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file
2009-03-16: provenance: term imported from OBI_0000187, which had original definition "A data format specification is a plan which organizes
information. Example: The ISO document specifying what encompasses an
XML document; The instructions in a XSD file"
PERSON: Alan Ruttenberg
PlanAndPlannedProcess Branch
OBI branch derived
OBI_0000187
data format specification
data set
Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).
A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.
2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type
2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.
person:Allyson Lister
person:Chris Stoeckert
OBI_0000042
group:OBI
data set
image
An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface.
person:Alan Ruttenberg
person:Allyson
person:Chris Stoeckert
OBI_0000030
group:OBI
image
data about an ontology part
Data about an ontology part is a data item about a part of an ontology, for example a term
Person:Alan Ruttenberg
data about an ontology part
plan specification
PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.
A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.
2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
2014-03-31: A plan specification can have other parts, such as conditional specifications.
Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved
Alan Ruttenberg
OBI Plan and Planned Process branch
OBI_0000344
2/3/2009 Comment from OBI review.
Action specification not well enough specified.
Conditional specification not well enough specified.
Question whether all plan specifications have objective specifications.
Request that IAO either clarify these or change definitions not to use them
plan specification
digital document
A digital document is a digital entity consisting of an electronic file which can be rendered into human-readable form by one or more computational applications. The digital document does not refer to the information content of the document but to an instance of the file.
3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digial entity'
person:Jennifer Fostel
OBI_0000195
group:OBI
obsolete2_digital document
true
measurement datum
Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.
A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.
2/2/2009 is_specified_output of some assay?
person:Chris Stoeckert
OBI_0000305
group:OBI
measurement datum
_identifier is a container under information content entity for collecting types of terms to indicate a specific instance or clas of what was used or participated in an investigation. Identifiers are borne by a product or its packaging, and can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.
Note: everybody agreed that identifier is probably a too general term. We however felt that it would be appropriate to group "identifiying" terms under some kind of umbrella. We therefore propose to use _identifier for that purpose. As per OBI conventions, the _ prefixing identifier indicates that this is a helper class and shouldn't be considered as final.
obsolete_identifier
true
version number
A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name.
Note: we feel that at the moment we are happy with a general version number, and that we will subclass as needed in the future. For example, see 7. genome sequence version
GROUP: IAO
version number
serial number
A serial number is an information content entity which is a unique sequence of characters borne by part of manufactured product or its packaging that is assigned to each individual in some class of products, and so can serve as a way to identify an individual product within the class. Serial numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.
Note: during the call there was some confusion between serial number and model number. We agreed that it would be very helpful for all those terms to have example of usages - please add if you have any :-)
GROUP: IAO
serial number
lot number
A lot number is an information content entity which is an identical sequence of character borne by part of manufactured product or its packaging for each instances of a product class in a discrete batch of an item. Lot numbers are usually assigned to each separate production run of an item. Manufacturing as a lot might be due to a variety of reasons, for example, a single process during which many individuals are made from the same portion of source material. Lot numbers can be encoded in a pattern of other information objects, such as bar codes, numerals, or patterns of dots.
GROUP: IAO
batch number
lot number
A settings datum is a datum that denotes some configuration of an instrument.
2/3/2009 Feedback from OBI
This should be a "setting specification". There is a question of whether it is information about a realizable or not.
Pro other specification are about realizables.
Cons sometimes specifies a quality which is not a realizable.
Alan grouped these in placeholder for the moment. Name by analogy to measurement datum.
setting datum
3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
Need to rework digital entity. Digital quality was suggested by Barry.
obsolete_digital quality
true
conclusion textual entity
that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660
A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers.
2009/09/28 Alan Ruttenberg. Fucoidan-use-case
2009/10/23 Alan Ruttenberg: We need to work on the definition still
Person:Alan Ruttenberg
conclusion textual entity
material information bearer
A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier.
a brain
a hard drive
A material entity in which a concretization of an information content entity inheres.
GROUP: IAO
material information bearer
histogram
A histogram is a report graph which is a statistical description of a
distribution in terms of occurrence frequencies of different event classes.
PERSON:Chris Stoeckert
PERSON:James Malone
PERSON:Melanie Courtot
GROUP:OBI
histogram
heatmap
A heatmap is a report graph which is a graphical representation of data
where the values taken by a variable(s) are shown as colors in a
two-dimensional map.
PERSON:Chris Stoeckert
PERSON:James Malone
PERSON:Melanie Courtot
GROUP:OBI
heatmap
Venn diagram
A Venn diagram is a report graph showing all hypothetically possible
logical relations between a finite collection of sets.
PERSON:Chris Stoeckert
PERSON:James Malone
PERSON:Melanie Courtot
WEB: http://en.wikipedia.org/wiki/Venn_diagram
Venn diagram
obsolete_survival curve
A survival curve is a report graph which is a graphical representation of data where the percentage of survival is plotted as a function of time.
PERSON:Chris Stoeckert
PERSON:James Malone
PERSON:Melanie Courtot
WEB: http://www.graphpad.com/www/book/survive.htm
obsolete_survival curve
true
dendrogram
Dendrograms are often used in computational biology to
illustrate the clustering of genes.
A dendrogram is a report graph which is a tree diagram
frequently used to illustrate the arrangement of the clusters produced by a
clustering algorithm.
PERSON:Chris Stoeckert
PERSON:James Malone
PERSON:Melanie Courtot
WEB: http://en.wikipedia.org/wiki/Dendrogram
dendrogram
scatter plot
Comparison of gene expression values in two samples can be displayed in a scatter plot
A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.
PERSON:Chris Stoeckert
PERSON:James Malone
PERSON:Melanie Courtot
scattergraph
WEB: http://en.wikipedia.org/wiki/Scatterplot
scatter plot
A photograph is created by projecting an image onto a photosensitive surface such as a chemically treated plate or film, CCD receptor, etc.
PERSON:Alan Ruttenberg
PERSON:Joanne Luciano
PERSON:Melanie Courtot
WEB: http://en.wiktionary.org/wiki/photograph
photograph
photographic print
A photographic print is a material entity upon which a photograph generically depends.
PERSON:Alan Ruttenberg
PERSON:Melanie Courtot
photographic print
obsolescence reason specification
The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.
PERSON: Alan Ruttenberg
PERSON: Melanie Courtot
obsolescence reason specification
textual entity
Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities
A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.
AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc.
MC, 2009-09-14 (following IAO call 2009-09-01): textual entities live at the FRBR (http://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records) manifestation level. Everything is significant: line break, pdf and html versions of same document are different textual entities.
PERSON: Lawrence Hunter
text
textual entity
citation
Verspoor, K., Cohen, KB., Hunter, L. Textual characteristics of traditional and Open Access scientific journals are similar, BMC Bioinformatics 2009, 10:183.
A textual entity intended to identify a particular publication.
PERSON: Lawrence Hunter
citation
author identification
L. Hunter
A textual entity intended to identify a particular author
PERSON: Lawrence Hunter
author identification
institutional identification
University of Colorado Denver School of Medicine
A textual entity intended to identify a particular institution
PERSON: Lawrence Hunter
institutional identification
caption
Figure 1: A system diagram describing the modules of the Hanalyzer. Reading methods (green) take external sources of knowledge (blue) and extract information from them, either by parsing structured data or biomedical language processing to extract information from unstructured data. Reading modules are responsible for tracking the provenance of all knowledge. Reasoning methods (yellow) enrich the knowledge that results from reading by, for example, noting two genes that are annotated to the same ontology term or database entry. All knowledge sources, read or reasoned, are assigned a reliability score, and all are combined using that score into a knowledge network (orange) that represents the integration of all sorts of relationship between a pair of genes and a combined reliability score. A data network (also orange) is created from experimental results to be analyzed. The reporting modules (pink) integrate the data and knowledge networks, producing visualizations that can be queried with the associated drill-down tool.
A textual entity that describes a figure
PERSON: Lawrence Hunter
caption
document title
Textual characteristics of traditional and Open Access scientific journals are similar
A textual entity that names a document
PERSON: Lawrence Hunter
document title
table
| T F
--+-----
T | T F
F | F F
A textual entity that contains a two-dimensional arrangement of texts repeated at regular intervals across a spatial range, such that the spatial relationships among the constituent texts expresses propositions
PERSON: Lawrence Hunter
table
table of abbreviations
IAO information artifact ontology
OBI ontology of biomedical investiations
GO gene ontology
A table where the constituent texts are abbreviations and their expansions
PERSON: Lawrence Hunter
table of abbreviations
figure
Any picture, diagram or table
An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something.
PERSON: Lawrence Hunter
figure
diagram
A molecular structure ribbon cartoon showing helices, turns and sheets and their relations to each other in space.
A figure that expresses one or more propositions
PERSON: Lawrence Hunter
diagram
document
A journal article, patent application, laboratory notebook, or a book
A collection of information content entities intended to be understood together as a whole
PERSON: Lawrence Hunter
document
publication
journal article, newspaper story, book, etc.
A document that is the output of a publishing process.
PERSON: Chris Stoeckert
PERSON: Jie Zheng
PERSON: Lawrence Hunter
published document
Revisit the term in Octorber 2020. Improve the defintion.
publication
publication about an investigation
Most scientific journal articles
A publication that is about an investigation
PERSON: Lawrence Hunter
scientific publication
publication about an investigation
patent
US Patent 6,449,603
A document that has been accepted by a patent authority
PERSON: Lawrence Hunter
patent
document part
An abstract, introduction, method or results section.
An information content entity that is part of a document.
PERSON: Lawrence Hunter
document part
abstract
The profusion of high-throughput instruments and the explosion of new results in the scientific literature, particularly in molecular biomedicine, is both a blessing and a curse to the bench researcher. Even knowledgeable and experienced scientists can benefit from computational tools that help navigate this vast and rapidly evolving terrain. In this paper, we describe a novel computational approach to this challenge, a knowledge-based system that combines reading, reasoning and reporting methods to facilitate analysis of experimental data. Reading methods extract information from external resources, either by parsing structured data or biomedical language processing to extract information from unstructured data, and track knowledge provenance. Reasoning methods enrich the knowledge that results from reading by, for example, noting two genes that are annotated to the same ontology term or database entry. Reasoning is also used to combine all sources into a knowledge network that represents the integration of all sorts of relationships between a pair of genes, and to calculate a combined reliability score. Reporting methods combine the knowledge network with a congruent network constructed from experimental data and visualize the combined network in a tool that facilitates the knowledge-based analysis of that data.
A summary of the entire document that is substantially smaller than the document it summarizes. It is about the document it summarizes.
PERSON: Lawrence Hunter
precis
abstract
introduction to a publication about an investigation
Section labelled 'introduction' of a typical scientific journal article
A part of a publication about an investigation that is about the objective specification (why the investigation is being done)
PERSON: Lawrence Hunter
background
introduction
overview
introduction to a publication about an investigation
methods section
The section labelled 'Methods' or 'Materials and Methods' in a typical scientific journal article.
A part of a publication about an investigation that is about the study design of the investigation
PERSON: Lawrence Hunter
experimental
experimental methods
experimental procedures
experimental section
method
methodology
methods
methods section
results section
The section labelled 'results' in a typical scientific journal article
A part of a publication about an investigation that is about a study design execution
PERSON: Lawrence Hunter
results
results section
discussion section of a publication about an investigation
A part of a publication about an investigation that is about the study interpretation of the investigation
PERSON: Lawrence Hunter
discussion
discussion section
discussions
discussion section of a publication about an investigation
references section
The list of citations found at the end of a scientific publication, grant proposal or patent application, sometimes called "literature cited" or "bibliography"
A part of a document that has citations as parts
PERSON: Lawrence Hunter
literature cited
reference
reference list
references
references section
author list
Lawrence Hunter and Kevin Brettonel Cohen
A part of a document that enumerates the authors of the document
PERSON: Lawrence Hunter
author list
institution list
The University of Colorado Denver School of Medicine and the University of Colorado Boulder.
A part of a document that has parts that are institution identifications associated with the authors of the document
PERSON: Lawrence Hunter
institution list
author contributions section
LH conceived of the hypothesis, designed the study and contributed to the writing of the manuscript. KBC executed the experiments, analyzed the data, and contributed to the writing of the manuscript.
A part of a publication that is about the specific contributions of each author
PERSON: Lawrence Hunter
author contributions
authors' contribution
authors' contributions
authors' roles
contributions by the authors
contributorship
author contributions section
acknowledgements section
The authors wish to thank Alan Ruttenberg for his constructive comments about an earlier draft of this manuscript
Part of a publication that is about the contributions of people or institutions other than the authors.
PERSON: Lawrence Hunter
acknowledgement
acknowledgements
acknowledgment
acknowledgments
acknowledgements section
footnote
The referent in the text is usually indicated by a special typographic character such as * or a superscripted number, which is also used to indicate the footnote that refers to that text.
A part of a document that is about a specific other part of the document. Usually footnotes are spatially segregated from the rest of the document.
PERSON: Lawrence Hunter
endnote
footnotes
footnote
supplementary material to a document
A part of a document that is segregated from the rest of the document due to its size
PERSON: Lawrence Hunter
additional file
additional files
additional information
appendix
electronic supplementary material
electronic supplementary materials
supplemental data
supplemental information
supplemental material
supplementary data
supplementary files
supplementary information
supplementary material
supplementary materials
supporting information
supplementary material to a document
table of contents
A table that relates document parts to specific locations in a document (usually page numbers). This is also a document part (subsumption there should be inferred).
PERSON: Lawrence Hunter
table of contents
table of figures
A table that relates figures in a document to specific locations in that document (usually page numbers). This is also a document part (subsumption there should be inferred).
PERSON: Lawrence Hunter
table of figures
running title
A shorter version of a document title
PERSON: Lawrence Hunter
running title
copyright section
This work is licensed under a Creative Commons Attribution-Share Alike 3.0 United States License.
A document part that describes legal restrictions on making or distributing copies of the document
PERSON: Lawrence Hunter
copyright section
1
A cartesian spatial coordinate datum is a representation of a point in a spatial region, in which equal changes in the magnitude of a coordinate value denote length qualities with the same magnitude
2009-08-18 Alan Ruttenberg - question to BFO list about whether the BFO sense of the lower dimensional regions is that they are always part of actual space (the three dimensional sort) http://groups.google.com/group/bfo-discuss/browse_thread/thread/9d04e717e39fb617
Alan Ruttenberg
AR notes: We need to discuss whether it should include site.
cartesian spatial coordinate datum
http://groups.google.com/group/bfo-discuss/browse_thread/thread/9d04e717e39fb617
1
A cartesion spatial coordinate datum that uses one value to specify a position along a one dimensional spatial region
Alan Ruttenberg
one dimensional cartesian spatial coordinate datum
1
1
A cartesion spatial coordinate datum that uses two values to specify a position within a two dimensional spatial region
Alan Ruttenberg
two dimensional cartesian spatial coordinate datum
1
1
1
A cartesion spatial coordinate datum that uses three values to specify a position within a three dimensional spatial region
Alan Ruttenberg
three dimensional cartesian spatial coordinate datum
A scalar measurement datum that is the result of measurement of length quality
Alan Ruttenberg
length measurement datum
denotator type
The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.
A denotator type indicates how a term should be interpreted from an ontological perspective.
Alan Ruttenberg
Barry Smith, Werner Ceusters
denotator type
A scalar measurement datum that is the result of measurement of mass quality
2009/09/28 Alan Ruttenberg. Fucoidan-use-case
Person:Alan Ruttenberg
mass measurement datum
hypothesis textual entity
that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660
A textual entity that expresses an assertion that is intended to be tested.
2009/09/28 Alan Ruttenberg. Fucoidan-use-case
Person:Alan Ruttenberg
hypothesis textual entity
A scalar measurement datum that is the result of measuring a temporal interval
2009/09/28 Alan Ruttenberg. Fucoidan-use-case
Person:Alan Ruttenberg
time measurement datum
A textual entity that is used as directive to deliver something to a person, or organization
2010-05-24 Alan Ruttenberg. Use label for the string representation. See issue https://github.com/information-artifact-ontology/IAO/issues/59
postal address
email address
Alan Ruttenberg 1/3/2012 - Provisional id, see issue at https://github.com/information-artifact-ontology/IAO/issues/130&thanks=130&ts=1325636583
Person:Alan Ruttenberg
Person:Chris Stoeckart
email address
author role
A role inhering in a person or organization that is realized when the bearer participates in the work which is the basis of the document, in the writing of the document, and signs it with their name.
PERSON: Alan Ruttenberg
PERSON: Melanie Courtot
author role
A planned process in which journal articles are read or processed and data items are extracted, typically for further analysis or indexing
Person:Alan Ruttenberg
data item extraction from journal article
A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free.
Person: Jie Zheng
https://en.wikipedia.org/wiki/Publishing
VEuPathDB
publishing process
A document that is in preparation for submission to be published.
PERSON: Jie Zheng
EFO_0001795 in preparation
VEuPathDB
document in preparation for publication
Recording the current temperature in a laboratory notebook. Writing a journal article. Updating a patient record in a database.
A planned process in which a document is created or added to by including the specified input in it.
6/11/9: Edited at OBI workshop. We need to be able identify a child form of information artifact which corresponds to something enduring (not brain like). This used to be restricted to physical document or digital entity as the output, but that excludes e.g. an audio cassette tape
Bjoern Peters
wikipedia http://en.wikipedia.org/wiki/Documenting
documenting
line graph
A line graph is a type of graph created by connecting a series of data
points together with a line.
PERSON:Chris Stoeckert
PERSON:Melanie Courtot
line chart
GROUP:OBI
WEB: http://en.wikipedia.org/wiki/Line_chart
line graph
A new pubmed ID being created for a journal article, and the associated pubmed record containing information to the journal article. A license plate number registered at the DMV to be belonging to a specific vehicle and owner. Placing a barcode on a product and entering information in a database that this barcode is assigned.
A planned process in which a new CRID is created, associated with an entity, and stored in the CRID registry thereby registering it as being associated with some entity
2014-05-05: It is the CRID registry that assigns CRIDs, not the users of the registry.
Person:Alan Ruttenberg
Person:Bjoern Peters
Person:Melanie Courtot
assigning a CRID
assigning a centrally registered identifier
Articles in Pubmed are reviewed by curators who add MESH terms to the Pubmed records in order to categorize them better and improve the ability to search for them.
A planned process in which a CRID registry associates an information content entity with a CRID symbol
PERSON:Alan Ruttenberg
associating information with a CRID in the CRID registry
associating information with a centrally registered identifier in its registry
a planned process with the objective to establish a system that allows to refer to specific entities of a certain kind and store information about them, by establishing a CRID registry and plan specifications for the process of 1) assigning a CRID and 2) looking up a CRID.
MC, 20101124: deprecated following discussion at IAO call 20101124. Term was deemed not necessary - no use case for now.
obsolete_establishing a CRID registry
true
The sentence "The article has Pubmed ID 12345." contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.
A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry.
PERSON: Alan Ruttenberg
PERSON: Bill Hogan
PERSON: Bjoern Peters
PERSON: Melanie Courtot
CRID symbol
Original proposal from Bjoern, discussions at IAO calls
centrally registered identifier symbol
The sentence "The article has Pubmed ID 12345." contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.
An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs.
2014-05-05: In defining this term we take no position on what the CRID denotes. In particular do not assume it denotes a *record* in the CRID registry (since the registry might not have 'records').
Alan, IAO call 20101124: potentially the CRID denotes the instance it was associated with during creation.
Note, IAO call 20101124: URIs are not always CRID, as not centrally registered. We acknowledge that CRID is a subset of a larger identifier class, but this subset fulfills our current needs. OBI PURLs are CRID as they are registered with OCLC. UPCs (Universal Product Codes from AC Nielsen)are not CRID as they are not centrally registered.
PERSON: Alan Ruttenberg
PERSON: Bill Hogan
PERSON: Bjoern Peters
PERSON: Melanie Courtot
CRID
Original proposal from Bjoern, discussions at IAO calls
centrally registered identifier
PubMed is a CRID registry. It has a dataset of PubMed identifiers associated with journal articles.
A CRID registry is a dataset of CRID records, each consisting of a CRID symbol and additional information which was recorded in the dataset through a assigning a centrally registered identifier process.
PERSON: Alan Ruttenberg
PERSON: Bill Hogan
PERSON: Bjoern Peters
PERSON: Melanie Courtot
CRID registry
Original proposal from Bjoern, discussions at IAO calls
centrally registered identifier registry
Going to the PubMed website and entering a PubMed ID in order to retrieve the Pubmed information associated with that ID.
A planned process in which a request to a CRID registry is made to return the information associated with a CRID symbol
PERSON: Alan Ruttenberg
PERSON: Bill Hogan
PERSON: Bjoern Peters
PERSON: Melanie Courtot
looking up a CRID
looking up a centrally registered identifier
time stamped measurement datum
pmid:20604925 - time-lapse live cell microscopy
A data set that is an aggregate of data recording some measurement at a number of time points. The time series data set is an ordered list of pairs of time measurement data and the corresponding measurement data acquired at that time.
Alan Ruttenberg
experimental time series
time sampled measurement data set
written name
"Bill Clinton"
"The Eiffel Tower"
"United States of America"
A textual entity that denotes a particular in reality.
PERSON: Bill Hogan
https://github.com/information-artifact-ontology/IAO/issues/114
The qualifier "written" is to set it apart from spoken names. Also, note the restrictions to particulars. We are not naming universals. We could however, be naming, attributive collections which are particulars, so "All people located in the boundaries of the city of Little Rock, AR on June 18, 2011 at 9:50a CDT" would be a name.
written name
A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task.
PERSON: Melanie Courtot
PERSON: Michel Dumontier
https://github.com/information-artifact-ontology/IAO/issues/80
software method
A software module is software composed of a collection of software methods.
PERSON: Melanei Courtot
PERSON: Michel Dumontier
https://github.com/information-artifact-ontology/IAO/issues/80
software module
A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application.
PERSON: Melanie Courtot
PERSON: Michel Dumontier
https://github.com/information-artifact-ontology/IAO/issues/80
software library
A software application is software that can be directly executed by some processing unit.
PERSON: Melanie Courtot
PERSON: Michel Dumontier
https://github.com/information-artifact-ontology/IAO/issues/80
software application
A software script is software whose instructions can be executed using a software interpreter.
PERSON: Melanie Courtot
PERSON: Michel Dumontier
https://github.com/information-artifact-ontology/IAO/issues/80
software script
abbreviation textual entity
From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/):
BAC: Bacterial artificial chromosome; CR: Calretinin; GFAP: Glial fibrillary acidic protein; MAP: Microtubule-associated protein; MRI: Magnetic resonance imaging; NSC: Neural stem cell; PDA: Patent ductus arteriosus; PMG: Polymicrogyria; PNH: Periventricular nodular heterotopia; VSD: Ventricular septal defect.
A textual entity listing abbreviations and their expansions that are used in a document.
PERSON: Bill Baumgartner
abbreviation textual entity
abbreviations section
The section labelled 'abbreviations' in a typical scientific journal article.
A part of a document where abbreviations and their long-forms used within the document are listed.
PERSON: Bill Baumgartner
abbreviation and acronyms
abbreviation list
abbreviations
abbreviations and acronyms
abbreviations list
abbreviations used
definitions for abbreviations
list of abbreviations
list of abbreviations used
non-standard abbreviations
nonstandard abbreviations
nonstandard abbreviations and acronyms
abbreviations section
author information section
The section labelled 'author information' in a typical scientific journal article, e.g. in Takon. Ann Gen Psychiatry. 2011; 10: 25. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204268/)
A part of a document about the authors that provides biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.
PERSON: Bill Baumgartner
author information
authors’ information
biographies
contributor information
author information section
author information textual entity
From Takon. Ann Gen Psychiatry. 2011; 10: 25. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204268/):
IT [the author] is the lead paediatrician for ADHD services in East Hertfordshire, UK, where she runs a weekly joint ADHD clinic with the Child and Adolescent psychiatrist and works within an ADHD specialist team. IT also sees children with other neurodisability issues who may have comorbid ADHD, where the presentation may be more complex and challenging to manage. IT has vast experience in managing children with complex ADHD. She has 18 years of experience in paediatrics and also has extensive experience in the use of psychopharmacologic agents in managing children with ADHD.
A textual entity expression information about an author of a document. This information may include biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.
PERSON: Bill Baumgartner
author information textual entity
author summary section
The section labelled 'synopsis' in a typical scientific journal article, e.g. in Pendse et al. BMC Genomics. 2013; 14: 136. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608171/)
A part of a document, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers.
PERSON: Bill Baumgartner
author summary
summary
synopsis
Article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines)
author summary section
author summary textual entity
From Pendse et al. BMC Genomics. 2013; 14: 136. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608171/):
The search for genetic risk factors for common human diseases often relies on the use of linkage and association studies to establish correlation between genomic markers and disease risk. These studies require additional functional evaluation of candidate genes, including their possible interaction with diet and environment. The number of candidate genes is typically large and the development of appropriate genetic tools in mammalian systems is slow. By contrast, large-scale genetic screens, using widely available genetic tools, are routinely conducted in the fruit fly Drosophila melanogaster. In this study, we used Drosophila to screen candidate genes identified in human genome-wide scans as associated with risk of metabolic abnormalities such as type 2 diabetes. We show that a number of human candidate genes have fly orthologs that play an important role in Drosophila tolerance to high dietary sucrose. We further explored some of the specific metabolic abnormalities that can result when these genes’ activities are reduced in flies, focusing on a gene we call dHHEX (CG7056), the fly ortholog of human HHEX.
A textual entity, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers, e.g as described in the article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).
PERSON: Bill Baumgartner
Article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).
author summary textual entity
availability section
The section labelled 'availability and requirements' in a typical scientific journal article, e.g. Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/).
A part of a document about a resource described in the document, e.g. software, that describes where and/or how that resource can be obtained.
PERSON: Bill Baumgartner
availability
availability of data
data archiving
data availability
data availability statement
data sharing statement
availability section
availability textual entity
From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/):
Project home page:http://krux.googlecode.com
A textual entity expressing the location of a resource, e.g. software, or the manner in which a resource can be obtained.
PERSON: Bill Baumgartner
availability textual entity
case report section
The section labelled 'case report' in a typical scientific journal article, e.g. in Taglia et al. Acta Myol. 2012 Dec; 31(3): 201–203. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631801/)
A part of a document about the medical history of a specific patient as it relates to the topic of the document.
PERSON: Bill Baumgartner
case presentation
case report
case report section
case report textual entity
Excerpt from Taglia et al. Acta Myol. 2012 Dec; 31(3): 201–203. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631801/):
The patient is a 50-year-old man. His medical history was not contributory. At the age of 37 years, he complained of persistent fatigue and dyspnoea even for modest efforts and oedema of lower limbs. The patient was examined at the department of internal medicine of the local hospital, and hospitalised with a diagnosis of dilated cardiomyopathy probably consequence of a myocarditis process. Soon after he was transferred to the cardiologic department of the regional hospital, and pharmacologically treated for heart failure and pulmonary hypertension.
A textual entity that expresses a detailed account of a portion of the medical history for a specific patient.
PERSON: Bill Baumgartner
case report textual entity
conclusion section
The section labelled 'conclusion' in a typical scientific journal article.
A part of a document used to summarize the findings discussed in the document. The conclusion section is typically found near the end of a document.
PERSON: Bill Baumgartner
concluding remarks
conclusion
conclusions
findings
summary
conclusion section
conflict of interest section
The section labelled 'conflict of interest statement' in a typical scientific journal article.
A part of a document used to declare any competing interests regarding the authors and/or funding organization for the work described in the document.
PERSON: Bill Baumgartner
authors' disclosures of potential conflicts of interest
competing financial interests
competing interests
conflict of interest
conflict of interest statement
conflict of interests
conflicts of interest
declaration of competing interest
declaration of competing interests
declaration of interest
declaration of interests
disclosure of conflict of interest
disclosure of potential conflicts of interest
duality of interest
statement of interest
conflict of interest section
conflict of interest statement
SD [an author] is a Merck employee and Merck is the sponsor of this study. [Taken from 'Effects of obstructive sleep apnoea risk on postoperative respiratory complications: protocol for a hospital-based registry study' Shin et al. 2016 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4735131/)]
A textual entity that expresses a situation involving one or more of the authors, or the funding source of a document whereby the authors or funding source stand to potentially gain (typically financially) from the results reported in the document.
PERSON: Bill Baumgartner
conflict of interest textual entity
consent section
The section labelled 'consent' in a typical scientific journal article, e.g. Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/)
A part of a document about the consent process that was used to enroll patients in a study.
PERSON: Bill Baumgartner
consent
consent section
consent textual entity
From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/):
Written informed consent was obtained from the patient’s parents for publication of this Case report and any accompanying images. A copy of the written consent is available for review by the Editor-in chief of this journal.
A textual entity that documents the consenting process used to enroll patients in a study.
PERSON: Bill Baumgartner
consent textual entity
ethical approval section
The section labelled 'ethical approval' in a typical scientific journal article.
A part of a document about the governance body responsible for approving the work discussed in a document on an ethical basis.
PERSON: Bill Baumgartner
ethical approval
ethical requirements
ethics
ethics statement
ethical approval section
ethical approval textual entity
From McLean et al. Br J Gen Pract. 2014 Jul; 64(624): e440–e447 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073730/):
The NHS National Research Ethics Service had previously approved the use of these anonymised data for research purposes and this analysis did not require independent review.
A textual entity that documents the ethical approval of some study design.
PERSON: Bill Baumgartner
ethical approval textual entity
figures section
The section labelled 'figures' in a typical scientific journal article.
A part of a document that contains one or more figures.
PERSON: Bill Baumgartner
figures
figures section
funding source declaration section
The section labelled 'funding' in a typical scientific journal article.
A part of a document used to detail information regarding the source of funding used in support of the generation of the document content.
PERSON: Bill Baumgartner
financial support
funding
funding information
funding sources
funding statement
funding/support
grants
role of the funding source
source of funding
sources of funding
study funding
funding source declaration section
funding souce declaration textual entity
From Stephan et al. Accid Anal Prev. 2011 May; 43(3): 1062–1067. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3062852/):
This study was supported by the International Collaborative Research Grants Scheme with joint grants from the Wellcome Trust UK (GR071587MA) and the Australian NHMRC (268055). The funding sources played no role in study design, data collection, analysis or interpretation, writing the report, or the decision to submit the paper for publication.
A textual entity documenting the source of funding that supported some study.
PERSON: Bill Baumgartner
funding source declaration textual entity
future directions section
The section labelled 'future directions' in a typical scientific journal article.
A part of a document detailing extensions of the described work that may be implemented at some future point in time.
PERSON: Bill Baumgartner
future challenges
future considerations
future developments
future directions
future outlook
future perspectives
future plans
future prospects
future research
future research directions
future studies
future work
outlook
future directions section
future directions textual entity
Excerpt from Wang and Li. Acta Pharmacol Sin. 2016 Jan; 37(1): 25–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722976/):
In the future, several questions will need to be resolved regarding the physiological assembly of KCNQ channels and their functional implications in complex neural circuits. First, we still lack sufficiently selective inhibitors and activators among the KCNQ family members.
A textual entity expressing ideas regarding future work relevant to work described in a document that could be done.
PERSON: Bill Baumgartner
future directions textual entity
genome announcement section
The section labelled 'genome announcement' in a typical scientific journal article, e.g. in Kim et al. J Bacteriol. 2011 Oct; 193(19): 5537. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466/)
A document part announcing the publication of a novel draft genome sequence.
PERSON: Bill Baumgartner
genome announcement
genome announcement section
genome announcement textual entity
Excerpt from Kim et al. J Bacteriol. 2011 Oct; 193(19): 5537. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466/):
Here we report the genome sequence of Lactobacillus malefermentans KCTC 3548, which we obtained using a whole-genome shotgun strategy (4) with Roche 454 GS (FLX Titanium) pyrosequencing (257,559 reads totaling ∼89.8 Mb; ∼45-fold coverage of the genome) at the Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB).
A textual entity that describes the generation and public release of a novel, draft genome sequence.
PERSON: Bill Baumgartner
genome announcement textual entity
keyword textual entity
From: Fu and Lin. Identification of gene-oriented exon orthology between human and mouse. BMC Genomics. 2012; 13(Suppl 1): S10. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303729/):
Exon orthology; alternative splicing; exon duplication; intron-exon structure.
A textual entity listing keywords indicating the major theme(s) of a document.
PERSON: Bill Baumgartner
keyword textual entity
keywords section
The section labelled 'keywords' in a typical scientific journal article.
A part of a document where keywords selected by the author to categorize the major theme(s) of a document are listed.
PERSON: Bill Baumgartner
keywords
keywords section
study limitations section
The section labelled 'limitations' in a typical scientific journal article.
A part of a document about biases or short comings related to the study design and execution.
PERSON: Bill Baumgartner
limitations
study limitations
Author guidelines published by The Society for Academic Emergency Medicine. (http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1553-2712/homepage/ForAuthors.html)
study limitations section
study limitations textual entity
Excerpt from the Limitations section of Fermann et al 2015, Acad Emerg Med. 2015 Mar; 22(3): 299–307 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405051/).
Owing to the nature of a post hoc study, any significant values must be interpreted with caution. In the current analysis, no multiple testing was conducted and p-values remain unadjusted. Moreover, a selection bias arising from the randomized open-label design of the original EINSTEIN PE study cannot be ruled out.
A textual entity addressing a shortcoming or bias of a study design or execution.
PERSON: Bill Baumgartner
Author guidelines published by The Society for Academic Emergency Medicine. (http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1553-2712/homepage/ForAuthors.html)
study limitations textual entity
materials section
The section labelled 'materials' in a typical scientific journal article, e.g. Nguyen et al. BMC Bioinformatics. 2010; 11: 279. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889936/)
A part of a document about the materials required to reproduce the content of the document.
PERSON: Bill Baumgartner
materials
materials section
notes section
The section labelled 'notes' in a typical scientific journal article, e.g. McLean et al. Br J Gen Pract. 2014 Jul; 64(624): e440–e447 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073730/):
A part of a document containing typically short notes about the document itself and/or the authors. Often the notes section contains subsections related to funding, competing interests, ethical approval, etc.
PERSON: Bill Baumgartner
notes
notes section
patients section
The section labelled 'patients' in a typical scientific journal article, e.g. in Citak et al. Acta Orthop. 2013 Jun; 84(3): 326–327. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715825/)
A part of a document about the patients that participated in a study.
PERSON: Bill Baumgartner
patients section
patients textual entity
Excerpt from Citak et al. Acta Orthop. 2013 Jun; 84(3): 326–327. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715825/):
Between January 1996 and February 2012, we treated 4 patients with interprosthetic femoral fractures (3 of them women) (Figure 2) using a custom-made interposition device (Waldemar Link GmbH, Hamburg, Germany) (Figure 1). Mean age was 74 (59–86) years. The fractures occurred mean 18 (13–28) years after primary THA and mean 14 (10–17) years after primary TKA. At the latest follow-up, after mean 8 (0.5–16) years, revision surgery with a total femur replacement was required in 1 case due to aseptic loosening. No other complications requiring revision surgery occurred.
A textual entity expressing information regarding the patients used in a study.
PERSON: Bill Baumgartner
patients textual entity
pre-publication history section
The section labelled 'pre-publication history' in a typical scientific journal article, e.g. in Xiao et al. BMC Anesthesiol. 2013; 13: 33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016475/)
A part of the document about the publication history of a document. This section typically details dates of document submission to a journal and dates of any re-submissions as well as reviewer comments and responses to reviewers by the authors.
PERSON: Bill Baumgartner
notice of republication
pre-publication history
pre-publication history section
pre-publication history textual entity
From Xiao et al. BMC Anesthesiol. 2013; 13: 33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016475/):
The pre-publication history for this paper can be accessed here:
http://www.biomedcentral.com/1471-2253/13/33/prepub
A textual entity that expresses the pre-publication history (submission dates, reviewer comments, etc) for a document, often including a hyperlink to a web page detailing the information.
PERSON: Bill Baumgartner
pre-publication history textual entity
related work section
The section labelled 'related work' in a typical scientific journal article, e.g. Žitnik and Zupan. Bioinformatics. 2015 Jun 15; 31(12): i230–i239. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542780/)
A part of a document about work in other publications that is relevant to the content of the document.
PERSON: Bill Baumgartner
related literature
related work
related work section
related work textual entity
Excerpt from Žitnik and Zupan. Bioinformatics. 2015 Jun 15; 31(12): i230–i239. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542780/):
Our work presented here is similar in spirit to our recently developed methodology for data fusion via collective matrix factorization (Žitnik and Zupan, 2015).
A textual entity that discusses work from other publications and expresses their relevancy to the content of a document.
PERSON: Bill Baumgartner
related work textual entity
requirements section
The section labelled 'availability and requirements' in a typical scientific journal article, e.g. Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/).
A part of a document about a resource described in the document, e.g. software, that describes the requirements necessary to use the resource, e.g. operating systems, hardware, etc. in the case of a software resource.
PERSON: Bill Baumgartner
requirements
requirements section
requirements textual entity
From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/):
• Operating systems: Platform independent
• Programming language: Matlab, R, Python
• Other requirements: None
• License: GNU GPL v3
• Any restrictions to use by non-academics: None
A textual entity that expresses the requirements necessary to use a resource, e.g. software.
PERSON: Bill Baumgartner
requirements textual entity
statistical analysis textual entity
From Mondo et al. Cardiovasc J Afr. 2013 Mar; 24(2): 28–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734881/):
Data were captured into EPI-DATA (version 3.1), cleaned and then exported to Stata version 10 for analysis. Continuous variables were summarised as mean (± standard deviation) and median (inter-quartile range), and presented in the tables. Categorical data were analysed using frequency and percentages, and results are presented in frequency tables and bar charts. Test of significance (p-value) was determined using the chi-square test. A p-value of less than 0.05 was considered significant.
A textual entity documenting statistical analysis tools and techniques employed.
PERSON: Bill Baumgartner
statistical analysis textual entity
statistical analysis section
The section labelled 'statistical analysis' in a typical scientific journal article, e.g. Mondo et al. Cardiovasc J Afr. 2013 Mar; 24(2): 28–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734881/)
A part of the document used to describe the statistical methodologies employed in the work presented in the document.
PERSON: Bill Baumgartner
statistical analysis
statistical analysis section
tables section
The section labelled 'tables' in a typical scientific journal article.
A part of a document that contains one or more tables.
PERSON: Bill Baumgartner
tables
tables section
An identifier that denotes some postal delivery route, some aggregate of postal delivery routes or a geographical region and was created for the purpose of sorting and delivering mail.
Mathias Brochhausen
postal code
A plan specification that if realized, is realized by the delivery of mail to some facility or mailbox within some geographical region.
Mathias Brochhausen
Postal delivery route
A postal code that is used in the United States for the purpose of sorting and delivering mail, and that denotes some postal delivery route or some aggregate of postal delivery routes.
Mathias Brochhausen
ZIP code
zone improvement plan code
database extract, transform, and load process
A planned process which takes as input a database and fills another database by extracting concretizations of information entities from the first, transforming them, and loading the transformed concretizations into the second.
Alan Ruttenberg 12/21/16: Maybe this definition instead: A planned process which takes as input a database and copies concretizations from the first, optionally transforms then copies the result to the second
Alan Ruttenberg 12/21/16: We don't define database in IAO, currently, as the bare word is ambiguous. Reasonable interpretations of the word might be the material entity, an information structure, an information content entity. However this definition commits, at least, to there being some material thing which bear concretizations of information entities and that there are new concretizations created during the process. We consider the ETL process in terms of information entities rather than the concretizations. No committment is made as to whether the specified output.
PERSON:Alan Ruttenberg
ETL
WEB:https://en.wikipedia.org/wiki/Extract,_transform,_load
database extract, transform, and load process
descriptive data section
A document part that lists and defines data variables, describes data characteristics (e.g. missing data information) and any assumptions and simplifications made.
PERSON: Chen Yang
PERSON: Jie Zheng
https://www.equator-network.org/reporting-guidelines/prisma/
ONE ontology
descriptive data section
additional results section
A results section that reports analyses other than main results of the study (e.g. subgroups analyses, adjusted analyses, sensitivity analyses, etc.)
PERSON: Chen Yang
PERSON: Jie Zheng
https://www.equator-network.org/reporting-guidelines/consort/
https://www.equator-network.org/reporting-guidelines/prisma/
https://www.equator-network.org/reporting-guidelines/strobe/
ONE ontology
additional results section
research participants section
A document part that describes human subject(s) that participated in a study (e.g. inclusion & exclusion criteria, recruitment methods, reasons for non-participation, grouping and randomisation, methods of follow-up, etc.).
PERSON: Chen Yang
PERSON: Jie Zheng
https://www.equator-network.org/reporting-guidelines/consort/
https://www.equator-network.org/reporting-guidelines/prisma/
https://www.equator-network.org/reporting-guidelines/strobe-nut/
ONE ontology
research participants section
measurement methods section
A methods section that describes details of data assessment methods (data measurement).
PERSON: Chen Yang
PERSON: Jie Zheng
https://www.equator-network.org/reporting-guidelines/strobe/
ONE ontology
measurement methods section
research settings section
A document part that describes the physical/social/cultural conditions around a research trial.
PERSON: Chen Yang
PERSON: Jie Zheng
https://www.ncbi.nlm.nih.gov/books/NBK262175/
ONE ontology
research settings section
study bias section
A study limitations section that describes systematic error introduced into sampling or testing by selecting or encouraging one outcome or answer over others.
PERSON: Chen Yang
PERSON: Jie Zheng
DOI: 10.1097/PRS.0b013e3181de24bc
ONE ontology
study bias section
graphical abstract
An abstract that is pictorial summary of the main findings described in the document.
PERSON: Jie Zheng
PERSON: Tim Beck
visual abstract
https://www.elsevier.com/authors/journal-authors/graphical-abstract
Biomedical literature NLP project
graphical abstract
identifier
An identifier is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity.
identifier
ontology module
I have placed this under 'data about an ontology part', but this can be discussed. I think this is OK if 'part' is interpreted reflexively, as an ontology module is the whole ontology rather than part of it.
ontology file
This class and it's subclasses are applied to OWL ontologies. Using an rdf:type triple will result in problems with OWL-DL. I propose that dcterms:type is instead used to connect an ontology URI with a class from this hierarchy. The class hierarchy is not disjoint, so multiple assertions can be made about a single ontology.
ontology module
base ontology module
An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies.
base ontology module
editors ontology module
An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users.
source ontology module
editors ontology module
main release ontology module
An ontology module that is intended to be the primary release product and the one consumed by the majority of tools.
TODO: Add logical axioms that state that a main release ontology module is derived from (directly or indirectly) an editors module
main release ontology module
bridge ontology module
An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.
bridge ontology module
import ontology module
A subset ontology module that is intended to be imported from another ontology.
TODO: add axioms that indicate this is the output of a module extraction process.
import file
import ontology module
subset ontology module
An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.
ontology slim
subset ontology
subset ontology module
curation subset ontology module
A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.
curation subset ontology module
analysis ontology module
An ontology module that is intended for usage in analysis or discovery applications.
analysis subset ontology module
single layer ontology module
A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.
ribbon subset
single layer subset ontology module
exclusion subset ontology module
A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes.
antislim
exclusion subset ontology module
external import ontology module
An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach.
external import
external import ontology module
species subset ontology module
A subset ontology that is crafted to either include or exclude a taxonomic grouping of species.
taxon subset
species subset ontology module
reasoned ontology module
An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available.
reasoned ontology module
generated ontology module
An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV.
TODO: Add axioms (using PROV-O?) that indicate this is the output-of some reasoning process
generated ontology module
template generated ontology module
An ontology module that is automatically generated from a template specification and fillers for slots in that template.
template generated ontology module
taxonomic bridge ontology module
taxonomic bridge ontology module
ontology module subsetted by expressivity
ontology module subsetted by expressivity
obo basic subset ontology module
A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools.
Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses).
An ontology is OBO Basic if and only if it has the following characteristics:
DAG
Unidirectional
No Dangling Clauses
Fully Asserted
Fully Labeled
No equivalence axioms
Singly labeled edges
No qualifier lists
No disjointness axioms
No owl-axioms header
No imports
obo basic subset ontology module
ontology module subsetted by OWL profile
ontology module subsetted by OWL profile
EL++ ontology module
EL++ ontology module
all
root
all
all
all
Vira
Viridae
viruses
Viruses
Vira
Viridae
viruses
Glomerellales
tef
Poa tef
Eragrostis tef
tef
Poa tef
Teleostomi
bony vertebrates
Euteleostomi
bony vertebrates
Eupulmonata
Ecdysozoa
Lophotrochozoa
Potexvirus
purple bacteria
purple bacteria and relatives
purple non-sulfur bacteria
purple photosynthetic bacteria
purple photosynthetic bacteria and relatives
Alphaproteobacteraeota
Alphaproteobacteriota
Proteobacteriota
proteobacteria
Proteobacteria
purple bacteria
purple bacteria and relatives
purple non-sulfur bacteria
purple photosynthetic bacteria
purple photosynthetic bacteria and relatives
Alphaproteobacteraeota
Alphaproteobacteriota
Proteobacteriota
proteobacteria
Proteobacteria gamma subdivision
Purple bacteria, gamma subdivision
g-proteobacteria
gamma proteobacteria
gamma subdivision
gamma subgroup
Gammaproteobacteria
Proteobacteria gamma subdivision
Purple bacteria, gamma subdivision
g-proteobacteria
gamma proteobacteria
gamma subdivision
gamma subgroup
leaf miner flies
leaf miners
Agromyzidae
leaf miner flies
leaf miners
Phytomyzinae
Liriomyza
PSTV
potato spindle tuber viroid PSTVd
Potato spindle tuber viroid
PSTV
potato spindle tuber viroid PSTVd
Cenchrinae
charophyte/embryophyte group
Charophyta/Embryophyta group
Streptophytina
charophyte/embryophyte group
Charophyta/Embryophyta group
biota
cellular organisms
biota
biota
biota
Dipnotetrapodomorpha
Lysobacterales
Xanthomonadales
Lysobacterales
Ipomovirus
Cassava brown streak virus
Cassava alphaflexivirus
Boreotheria
Boreoeutheria
Boreotheria
Mesangiospermae
Petrosaviidae
Pentapetalae
Glycine subgen. Soja
Ehrhartoideae
Oryzoideae
Ehrhartoideae
Pooideae
Centothecoideae
Panicoideae
Centothecoideae
PACMAD clade
Chloridoideae
Oryzeae
Triticeae
Paniceae
Andropogoneae
Cynodonteae
Eragrostideae
filamentous ascomycetes
Euascomycota
Pezizomycotina
filamentous ascomycetes
Euascomycota
Pyrenomycetes
Sordariomycetes
Pyrenomycetes
Osteoglossocephalai
Loricarioidei
Polypodiidae
Polypodiidae <ferns>
Polypodiidae
Boraginales
Stizolobium pruriens
Mucuna pruriens
Stizolobium pruriens
Mononychellus tanajoa
stink bugs
terrestrial turtle bugs
Pentatomidae
stink bugs
terrestrial turtle bugs
Cicereae
Crotalarieae
Dalbergieae
Genisteae
Phaseoleae
Trifolieae
Vicieae
Fabeae
Vicieae
Hordeinae
Oryzinae
Sorghinae
Tripsacinae
Triticinae
Andropogonodae
Panicodae
Triticodae
Viroids
Pospiviroidae
Viroids
Pospiviroid
leaf-footed bugs
squash bugs
tip wilters
Coreidae
leaf-footed bugs
squash bugs
tip wilters
Actinopteri
Clupeocephala
Otophysa
Otophysi
Otophysa
Characiphysi
Siluriphysi
Characiphysae
Characiphysi
Siluriphysi
Ostarioclupeomorpha
Otocephala
Otomorpha
Ostarioclupeomorpha
Otocephala
Raphignathae
Acrididea
Auchenorrhyncha
Pancrustacea
mandibulates
Mandibulata
mandibulates
Bunyavirales
unclassified Bunyavirales
American serpentine leafminer
celery leafminer
Liriomyza trifolii
American serpentine leafminer
celery leafminer
Bacillus phaseoli
Xanthomonas phaseoli
Bacillus phaseoli
eubacteria
Monera
Procaryotae
Prokaryota
Prokaryotae
bacteria
prokaryote
prokaryotes
Bacteria
eubacteria
Monera
Procaryotae
Prokaryota
Prokaryotae
bacteria
prokaryote
prokaryotes
Astroblepus sp. white spot
Coreinae
Homo/Pan/Gorilla group
Homininae
Archaea
Heterobranchia
Euthyneura
Euthyneura <gastropods>
Euthyneura
Helicina
Helicina Rafinesque, 1815
Sigmurethra
Helicina <clade>
Helicina
Helicina Rafinesque, 1815
Sigmurethra
Hypocreomycetidae
Canavanine-accumulating clade
non-protein amino acid accumulating clade
NPAAA clade
Canavanine-accumulating clade
non-protein amino acid accumulating clade
genistoids sensu lato
core genistoids
dalbergioids sensu lato
Pterocarpus clade
50 kb inversion clade
Hologalegina
inverted repeat lacking clade
inverted repeat loss clade
temperate herbaceous clade
IRL clade
inverted repeat lacking clade
inverted repeat loss clade
temperate herbaceous clade
indigoferoid/millettioid clade
robinioid clade
Diabroticina
Diabroticites
Rhizobium/Agrobacterium group
Sinorhizobium/Ensifer group
Crotonoideae
Manihoteae
Anasa
squash bug
Anasa tristis
squash bug
Filicopsida
Moniliformopses
ferns
Polypodiopsida
Filicopsida
Moniliformopses
ferns
Astroblepus
Negative-strand RNA viruses
Negarnaviricota
Negative-strand RNA viruses
Polyploviricotina
Ellioviricetes
RNA viruses
RNA viruses and viroids
Riboviria
RNA viruses
RNA viruses and viroids
Austropotamobius brown spot virus
unclassified Astroblepus
Ochrophyta
Spiralia
SAR supergroup
Sar
SAR supergroup
Colletotrichum gloeosporioides species complex
Equus intersubgeneric hybrids
Lablab
Orthornavirae
Kitrinoviricota
Pisuviricota
Alsuviricetes
Stelpaviricetes
Patatavirales
leaf beetles
Chrysomelidae
leaf beetles
eucaryotes
eukaryotes
Eucarya
Eucaryotae
Eukarya
Eukaryotae
eukaryotes
Eukaryota
eucaryotes
eucaryotes
eucaryotes
eukaryotes
eukaryotes
eukaryotes
Eucarya
Eucarya
Eucarya
Eucaryotae
Eucaryotae
Eucaryotae
Eukarya
Eukarya
Eukarya
Eukaryotae
Eukaryotae
Eukaryotae
eukaryotes
eukaryotes
eukaryotes
Bovinae
Sinorhizobium
Alphabacteria
Proteobacteria alpha subdivision
Purple bacteria, alpha subdivision
a-proteobacteria
alpha proteobacteria
alpha subdivision
alpha subgroup
Alphaproteobacteria
Alphabacteria
Proteobacteria alpha subdivision
Purple bacteria, alpha subdivision
a-proteobacteria
alpha proteobacteria
alpha subdivision
alpha subgroup
Pentatominae
Asopinae
brown algae
Chromophycota
Fucophyceae
Phaeophyta
algae
brown algae
Phaeophyceae
brown algae
Chromophycota
Fucophyceae
Phaeophyta
algae
brown algae
Podisus
spined soldier bug
Podisus maculiventris
spined soldier bug
Lema melanopus
Oulema melanopus
Lema melanopus
leafhoppers
Jassidae
Cicadellidae
leafhoppers
Jassidae
mealybugs
Pseudococcidae
mealybugs
Astroblepidae
Afrotheria
Laurasiatheria
Euarchontoglires
Anthropoidea
Simiiformes
ape
apes
Hominoidea
higher plants
land plants
plants
land plants
Embryophyta
higher plants
land plants
plants
land plants
hybrid of male donkey and female horse
mule
Equus asinus x Equus caballus
hybrid of male donkey and female horse
mule
Lysobacteraceae
Xanthomonas group
Xanthomonadaceae
Lysobacteraceae
Xanthomonas group
Azollaceae
Salviniaceae
Azollaceae
spider mites
Tetranychidae
spider mites
Tetranychus
red spider mite
two-spotted spider mite
twospotted mite
Tetranychus urticae
red spider mite
two-spotted spider mite
twospotted mite
teleost fishes
Teleostei
teleost fishes
Ostariophysi
tetrapods
Tetrapoda
tetrapods
amniotes
Amniota
amniotes
Theria
Theria <mammals>
Theria
Chlorophyta/Embryophyta group
chlorophyte/embryophyte group
green plants
Chlorobionta
Chlorophyta/Embryophyta group
Chloroplastida
chlorophyte/embryophyte group
green plants
Viridiplantae
Chlorophyta/Embryophyta group
chlorophyte/embryophyte group
green plants
green plants
Chlorobionta
Chlorobionta
Chlorophyta/Embryophyta group
Chloroplastida
chlorophyte/embryophyte group
green plants
green plants
Fungi/Metazoa group
opisthokonts
Opisthokonta
Fungi/Metazoa group
Fungi/Metazoa group
opisthokonts
opisthokonts
metazoans
multicellular animals
Animalia
animals
Metazoa
metazoans
multicellular animals
Animalia
animals
Bilateria
Protostomia
Neoptera
Orthopteroidea
Polyneoptera
Orthopteroidea
Hemipteroidea
hemipteroid assemblage
Paraneoptera
Hemipteroidea
hemipteroid assemblage
bugs
Heteropterodea
Prosorrhyncha
bugs
Heteropterodea
true bugs
Heteroptera
true bugs
Euheteroptera
Neoheteroptera
Panheteroptera
Pentatomomorpha
Pentatomoidea
Clypeorrhyncha
Cicadomorpha
Clypeorrhyncha
Cicadelloidea
Membracoidea
Cicadelloidea
Sternorrhyncha
aphids
Aphidiformes
aphids
Aphidomorpha
aphids
Aphidiformes
aphids
scale insects
scale insects
Coccoidea
scale insects
scale insects
Aphidoidea
Holometabola
Endopterygota
Holometabola
deuterostomes
Deuterostomia
deuterostomes
heterokonts
Chromophyta
Heterokonta
Straminipila
Stramenopiles
heterokonts
Chromophyta
Heterokonta
Straminipila
"Phytomonas" Bergey et al. 1923
Xanthomonas
"Phytomonas" Bergey et al. 1923
angiosperms
flowering plants
Angiospermae
Magnoliophyta
flowering plants
Magnoliophyta
Magnoliopsida
angiosperms
flowering plants
Angiospermae
Magnoliophyta
flowering plants
Centrospermae
Caryophyllales
Centrospermae
Streptophyta
Pecora
Rhizobiaceae group
Rhizobiales
alpha-2 proteobacteria
rhizobacteria
Hyphomicrobiales
Rhizobiaceae group
Rhizobiales
alpha-2 proteobacteria
rhizobacteria
BEP clade
BOP clade
BEP clade
buckwheat family
Polygonaceae
buckwheat family
Violales
Violanae
Malpighiales
Violales
Violanae
Mononychellus
Capparales
Brassicales
Capparales
Cruciferae
mustard family
Brassicaceae
Cruciferae
mustard family
Raphanus
radish
Raphanus sativus
radish
Agromonas
Bradyrhizobium
Agromonas
Rhizobium japonicum
Bradyrhizobium japonicum
Rhizobium japonicum
Haplorrhini
Phytomyxa
Rhizobacterium
Rhizobium
Phytomyxa
Rhizobacterium
pea family
Leguminosae
Fabaceae
pea family
Leguminosae
Rhizobium loti
Mesorhizobium loti
Rhizobium loti
Coreoidea
Faboideae
Papilionoideae
Faboideae
Arachis
goober
ground-nut
peanut
Arachis hypogaea
goober
ground-nut
peanut
Ensifer meliloti
Rhizobium meliloti
Sinorhizobium meliloti
Ensifer meliloti
Rhizobium meliloti
Cajanus
pigeon pea
Cajanus cajan
pigeon pea
Cicer
chickpea
garbanzo
Cicer arietinum
chickpea
garbanzo
Crotalaria
sunn hemp
Crotalaria juncea
sunn hemp
Bacillus francki
Phytomyxa leguminosarum
Rhizobacterium leguminosarum
Rhizobium trifoli
Rhizobium trifolii
Schinzia leguminosarum
Rhizobium leguminosarum
Bacillus francki
Phytomyxa leguminosarum
Rhizobacterium leguminosarum
Rhizobium trifoli
Rhizobium trifolii
Schinzia leguminosarum
Eragrostis
Glycine
The soybean or soya bean (Glycine max) is a species of legume native to East Asia, widely grown for its edible bean, which has numerous uses. Traditional unfermented food uses of soybeans include soy milk, from which tofu and tofu skin are made. Fermented soy foods include soy sauce, fermented bean paste, nattō, and tempeh.
soya bean
soybean
glycine max
soybean
soybeans
Glycine max (L.) Merr.
Phaseolus max
Glycine max
soybean
soybeans
Phaseolus max
Lathyrus
Rhizobium leguminosarum symbiovar trifolii
Rhizobium leguminosarum bv. trifolii
Rhizobium leguminosarum symbiovar trifolii
chickling vetch
white pea
Lathyrus sativus
chickling vetch
white pea
Lens
Lens <eudicots>
Lens
lentil
Lens esculenta
Lens culinaris
lentil
Lens esculenta
Lupinus
medics
Medicago
medics
alfalfa
lucerne
Medicago sativa subsp. sativa
Medicago sativa
alfalfa
lucerne
Medicago sativa subsp. sativa
Poales
Phaseolus
French bean
kidney bean
string bean
Phaseolus vulgaris
French bean
kidney bean
string bean
Sesbania
Trifolium
Vicia
CsCMV
Cassava common mosaic virus (CsCMV)
Cassava common mosaic virus
CsCMV
Cassava common mosaic virus (CsCMV)
broad bean
faba bean
fava bean
Vicia faba
broad bean
faba bean
fava bean
spring vetch
tare
Vicia sativa
spring vetch
tare
Vigna
cowpea
Phaseolus unguiculatus
Vigna unguiculata
cowpea
Phaseolus unguiculatus
mosquito ferns
Azolla
mosquito ferns
Potyviridae
spurge family
Euphorbiaceae
spurge family
Manihot
cassava
manioc
tapioca
yuca
Manihot utilissima
Manihot esculenta
cassava
manioc
tapioca
yuca
Manihot utilissima
Mucuna
Dioscoreales
mammals
mammals
Mammalia
mammals
mammals
Solananae
Solanales
Solananae
nightshade family
Solanaceae
nightshade family
Solanum
Polyphaga
Polyphaga <beetles>
Polyphaga
Cucujiformia
potato
potatoes
Solanum tuberosum
potato
potatoes
Oulema
BANA domain
Bradyrhizobiaceae
Bradyrhizobiaceae Garrity et al. 2006
Bradyrhizobium group
alpha-2 proteobacteria
Nitrobacteraceae
BANA domain
Bradyrhizobiaceae
Bradyrhizobiaceae Garrity et al. 2006
Bradyrhizobium group
alpha-2 proteobacteria
waterleaf family
Hydrophyllaceae
waterleaf family
Neopterygi
Neopterygii
Neopterygi
Solanoideae
Solaneae
Xanthomonas axonopodis pv. manihotis
Xanthomonas campestris pv. manihotis
Xanthomonas manihotis
Xanthomonas phaseoli pv. manihotis
Xanthomonas axonopodis pv. manihotis
Xanthomonas campestris pv. manihotis
Xanthomonas manihotis
Asilomorpha
Muscomorpha
Asilomorpha
Schizophora
Acalyptratae
Opomyzoidea
monocots
monocotyledons
Monocotyledoneae
monocots
Liliopsida
monocots
monocotyledons
Monocotyledoneae
monocots
grass family
Bambusaceae
Gramineae
Poaceae
grass family
Bambusaceae
Gramineae
Eleusine
finger millet
Eleusine coracana
finger millet
barleys
Hordeum
barleys
barley
Hordeum vulgare
barley
Dikarya
Oryza
Asian cultivated rice
red rice
rice
Oryza sativa
Asian cultivated rice
red rice
rice
bulrush millet
cattail millet
pearl millet
Pennisetum americanum
Pennisetum glaucum
Pennisetum typhoides
Pennisetum typhoideum
Setaria glauca
Cenchrus americanus
bulrush millet
cattail millet
pearl millet
Pennisetum americanum
Pennisetum glaucum
Pennisetum typhoides
Pennisetum typhoideum
Setaria glauca
Hemisorghum
Sorghum
Hemisorghum
Triticum
Canadian hard winter wheat
bread wheat
common wheat
wheat
Triticum aestivum subsp. aestivum
Triticum vulgare
Triticum aestivum
Canadian hard winter wheat
bread wheat
common wheat
wheat
Triticum aestivum subsp. aestivum
Triticum vulgare
Euchlaena
Zea
Euchlaena
maize
Zea mays var. japonica
Zea mays
maize
Zea mays var. japonica
Cenchrus
Chlorochroa
Chlorochroa ligata
Scitamineae
Zingiberiflorae
Zingiberales
Scitamineae
Zingiberiflorae
banana family
Musaceae
banana family
Musa
ginger family
Zingiberaceae
Zingiber
yam family
Dioscoreaceae
yam family
Commelinidae
Commeliniflorae
commelinids
Commelinidae
Commeliniflorae
Colletotrichum gloeosporioides (Penz.) Penz. & Sacc., 1884
Glomerella cingulata
Glomerella rufomaculans-vaccinii
Gnomoniopsis cingulata
Vermicularia gloeosporioides
Colletotrichum gloeosporioides
Colletotrichum gloeosporioides (Penz.) Penz. & Sacc., 1884
Glomerella cingulata
Glomerella rufomaculans-vaccinii
Gnomoniopsis cingulata
Vermicularia gloeosporioides
Mycota
fungi
Fungi
Mycota
fungi
Oomycetes
Peronosporomycetes
oomycetes
Oomycota
Oomycetes
Peronosporomycetes
oomycetes
Peronosporales
downy mildews
Peronosporaceae
downy mildews
Phytophthora
potato late blight
potato late blight agent
potato late blight fungus
Botrytis infestans
Phytophthora infestans
potato late blight
potato late blight agent
potato late blight fungus
Botrytis infestans
Cyclorrhapha
Eremoneura
ascomycetes
sac fungi
ascomycete fungi
Ascomycota
ascomycetes
sac fungi
ascomycete fungi
Diabrotica
true insects
insects
Insecta
true insects
insects
Glomerella
Colletotrichum
Glomerella
Sesbanieae
algae
PX clade
algae
vascular plants
vascular plants
Tracheophyta
vascular plants
vascular plants
seed plants
seed plants
Spermatophyta
seed plants
seed plants
Eumetazoa
Galerucinae
Luperini
Criocerinae
molluscs
mollusks
molluscs
Mollusca
molluscs
mollusks
molluscs
gastropods
gastropods
Gastropoda
gastropods
gastropods
land snails
Stylommatophora
land snails
Arionidae
Arion
arthropods
arthropods
Arthropoda
arthropods
arthropods
Tymovirales
Flexiviridae
Alphaflexiviridae
Flexiviridae
Glomerellaceae
Mesorhizobium
chelicerates
Chelicerata
chelicerates
arachnids
arachnids
Arachnida
arachnids
arachnids
Mesorhizobium/Phyllobacterium group
Phyllobacteriaceae
Mesorhizobium/Phyllobacterium group
mites and ticks
Acarina
mites & ticks
Acari
mites and ticks
Acarina
mites & ticks
Acariformes
Prostigmata
insects
Atelocerata
Tracheata
Uniramia
hexapods
Hexapoda
insects
Atelocerata
Tracheata
Uniramia
hexapods
Saltatoria
grasshoppers, crickets, and katydids
Orthoptera
Saltatoria
grasshoppers, crickets, and katydids
grasshoppers and locusts
grasshoppers
Caelifera
grasshoppers and locusts
grasshoppers
beetles
beetles
Coleoptera
beetles
beetles
Dicotyledoneae
dicots
dicotyledons
eudicots
eudicotyledons
Dicotyledoneae
dicots
dicotyledons
eudicots
Asteridae
asterids
Asteridae
Rosidae
rosids
Rosidae
flies
flies
Diptera
flies
flies
Chrysomeliformia
Phytophaga
Chrysomeloidea
Chrysomeliformia
Phytophaga
sordariomyceta
saccharomyceta
leotiomyceta
Fabales
Brachycera
water-ferns
Hydropteridales
Salviniales
water-ferns
Hydropteridales
Cutleriales
Cutleriaceae
Cutleria
Cutleria multifida
Pterygota
winged insects
Pterygota <insects>
Pterygota
winged insects
Eragrostidinae
Eleusininae
bugs
Hemiptera
bugs
chordates
chordates
Chordata
chordates
chordates
Vertebrata
vertebrates
vertebrates
Vertebrata <vertebrates>
Vertebrata
vertebrates
vertebrates
Gnathostomata
jawed vertebrates
Gnathostomata <vertebrates>
Gnathostomata
jawed vertebrates
Trigonella
Trigonella foenumgraecum
fenugreek
Trigonella foenum-graecum
Trigonella foenumgraecum
fenugreek
euphyllophytes
Euphyllophyta
euphyllophytes
fish
fishes
ray-finned fishes
Actinopterygi
Osteichthyes
bony fishes
Actinopterygii
fish
fishes
ray-finned fishes
Actinopterygi
Osteichthyes
bony fishes
Phacelia
catfishes
Siluriformes
catfishes
Rhizobiaceae
Sarcopterygii
Trombidiformes
Eleutherengonides
Eleutherengona
Eleutherengonides
Tetranychoidea
Dicondylia
Arionacea
Arionoidea
Arionacea
Panarthropoda
domestic water buffalo
river buffalo
water buffalo
Bos bubalis
Bubalus arnee bubalis
Bubalus bubalis
domestic water buffalo
river buffalo
water buffalo
Bos bubalis
Bubalus arnee bubalis
Craniata
Craniata <chordates>
Craniata
whales, hippos, ruminants, pigs, camels etc.
Cetartiodactyla
even-toed ungulates
Artiodactyla
whales, hippos, ruminants, pigs, camels etc.
Cetartiodactyla
even-toed ungulates
core eudicots
core eudicotyledons
Gunneridae
core eudicots
core eudicotyledons
eurosids I
fabids
eurosids I
malvids
euasterids I
lamiids
euasterids I
eutherian mammals
placental mammals
placentals
Placentalia
placentals
Eutheria
eutherian mammals
placental mammals
placentals
Placentalia
placentals
unclassified Alphaflexiviridae
ginger
Zingiber officinale
Phacelia tanacetifolia
primate
Primata
primates
Primates
Catarrhini
great apes
Pongidae
Hominidae
humans
Homo
human
man
Homo sapiens
Panpulmonata
Proboscidea
elephants
Proboscidea <placentals>
Proboscidea
elephants
elephants
Elephantidae
elephants
Elephas
Asian elephant
Asiatic elephant
Indian elephant
elephant
Elephas maximus
Asian elephant
Asiatic elephant
Indian elephant
elephant
odd-toed ungulates
odd-toed ungulates
Perissodactyla
odd-toed ungulates
odd-toed ungulates
horses
Equidae
horses
Amerhippus
Asinus
Dolichohippus
Equus subg. Amerhippus
Equus subg. Asinus
Equus subg. Dolichohippus
Equus subg. Equus
Equus subg. Hemionus
Equus subg. Hippotigris
Equus subgen. Sussemionus
Hemionus
Hippotigris
Sussemionus
Equus
Amerhippus
Asinus
Dolichohippus
Equus subg. Amerhippus
Equus subg. Asinus
Equus subg. Dolichohippus
Equus subg. Equus
Equus subg. Hemionus
Equus subg. Hippotigris
Equus subgen. Sussemionus
Hemionus
Hippotigris
Sussemionus
African ass
African wild ass
Somali wild ass
ass
domestic ass
donkey
Equus asinus
African ass
African wild ass
Somali wild ass
ass
domestic ass
donkey
domestic horse
equine
horse
Equus przewalskii f. caballus
Equus przewalskii forma caballus
Equus caballus
domestic horse
equine
horse
Equus przewalskii f. caballus
Equus przewalskii forma caballus
Brassiceae
Tylopoda
Camelidae
Camelus
Arabian camel
camel
dromedaries
dromedary
dromedary camel
one-humped camel
Camelus dromedarius
Arabian camel
camel
dromedaries
dromedary
dromedary camel
one-humped camel
Ruminantia
Bovidae
oxen, cattle
Bos
oxen, cattle
bovine
cattle
cow
dairy cow
domestic cattle
domestic cow
ox
oxen
Bos bovis
Bos primigenius taurus
Bos taurus
bovine
cattle
cow
dairy cow
domestic cattle
domestic cow
ox
oxen
Bos bovis
Bos primigenius taurus
Bubalus
planned process
A process that realizes a plan which is the concretization of a plan specification.
planned process
a regulatory role involved with making and/or enforcing relevant legislation and governmental orders
regulator role
Biological_feature_identification_objective is an objective role carried out by the proposition defining the aim of a study designed to examine or characterize a particular biological feature.
biological feature identification objective
a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body.
regulatory role
a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation.
material supplier role
A data set that is produced as the output of a class prediction data transformation and consists of a data set with assigned class labels.
classified data set
Is a material entity that is created or changed during material processing.
processed material
investigation
a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).
investigation
a role that inheres in a material entity that is realized in an assay in which data is generated about the bearer of the evaluant role
evaluant role
A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies.
assay
A planned process which results in physical changes in a specified input material
material processing
a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation
specimen role
An intervention design is a study design in which a controlled process applied to the subjects (the intervention) serves as the independent variable manipulated by the experimentalist. The treatment (perturbation or intervention) defined can be defined as a combination of values taken by independent variable manipulated by the experimentalists are applied to the recruited subjects assigned (possibly by applying specific methods) to treatment groups. The specificity of intervention design is the fact that independent variables are being manipulated and a response of the biological system is evaluated via response variables as monitored by possibly a series of assays.
intervention design
a population is a collection of individuals from the same taxonomic class living, counted or sampled at a particular site or in a particular area
population
A role borne by an entity and that is realized in a process that is part of an investigation in which an objective is achieved. These processes include, among others: planning, overseeing, funding, reviewing.
investigation agent role
An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.
organization
Organism_feature_identification_objective is a biological_feature_identification_objective role describing a study designed to examine or characterize a biological feature monitored at the level of the organism, e.g. height, weight, stage of development, stage of life cycle.
organism feature identification objective
A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.
protocol
is a process with the objective to place a material entity bearing the 'material to be added role' into a material bearing the 'target of material addition role'.
adding a material entity into a target
material to be added role is a protocol participant role realized by a material which is added into a material bearing the target of material addition role in a material addition process
material to be added role
A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion
drawing a conclusion based on data
a process of creating or modifying a plan specification
planning
An averaging objective is a data transformation objective where the aim is to perform mean calculations on the input of the data transformation.
averaging objective
is the specification of an objective to add a material into a target material. The adding is asymmetric in the sense that the target material largely retains its identity
adding material objective
an objective specification to determine a specified type of information about an evaluated entity (the material entity bearing evaluant role)
assay objective
target of material addition role is a role realized by an entity into which a material is added in a material addition process
target of material addition role
A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government.
regulatory agency
an objective specifiction that creates an specific output object from input materials.
material transformation objective
Manufacturing is a process with the intent to produce a processed material which will have a function for future use. A person or organization (having manufacturer role) is a participant in this process
manufacturing
is the objective to manufacture a material of a certain function (device)
manufacturing objective
study design execution
a planned process that carries out a study design
study design execution
Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process.
manufacturer role
A data set that is produced as the output of a class discovery data transformation and consists of a data set with assigned discovered class labels.
clustered data set
is a material processing with the objective to combine two or more material entities as input into a single material entity as output.
material combination
A planned process with the objective of collecting a specimen.
specimen collection process
A class prediction data transformation (sometimes called supervised classification) is a data transformation that has objective class prediction.
class prediction data transformation
A data item that is produced as the output of a center calculation data transformation and represents the center value of the input data.
center value
A data item that is produced as the output of an averaging data transformation and represents the average value of the input data.
average value
A objective specification to obtain a material entity for potential use as an input during an investigation.
specimen collection objective
is an objective to obtain an output material that contains several input materials.
material combination objective
A support vector machine is a data transformation with a class prediction objective based on the construction of a separating hyperplane that maximizes the margin between two data sets of vectors in n-dimensional space.
support vector machine
A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made.
decision tree induction objective
A decision tree building data transformation is a data transformation that has objective decision tree induction.
decision tree building data transformation
a software that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks.
GenePattern software
Peak matching is a data transformation performed on a dataset of a graph of ordered data points (e.g. a spectrum) with the objective of pattern matching local maxima above a noise threshold
peak matching
A k-nearest neighbors is a data transformation which achieves a class discovery or partitioning objective, in which an input data object with vector y is assigned to a class label based upon the k closest training data set points to y; where k is the largest value that class label is assigned.
k-nearest neighbors
A material sample role is a specimen role borne by a material entity that is the output of a material sampling process.
material sample role
A specimen gathering process with the objective to obtain a specimen that is representative of the input material entity
material sampling process
A material entity that has the material sample role
material sample
A CART (classification and regression trees) is a data transformation method for producing a classification or regression model with a tree-based structure.
CART
a directive information entity that is part of a study design. Independent variables are entities whose values are selected to determine its relationship to an observed phenomenon (the dependent variable). In such an experiment, an attempt is made to find evidence that the values of the independent variable determine the values of the dependent variable (that which is being measured). The independent variable can be changed as required, and its values do not represent a problem requiring explanation in an analysis, but are taken simply as given. The dependent variable on the other hand, usually cannot be directly controlled
study design independent variable
A data transformation which assesses how the results of a statistical analysis will generalize to an independent data set.
statistical model validation
An organization formed with a goal to have its members conduct investigations
research organization
A person or organization that has a manufacturer role
manufacturer
the part of the execution of an intervention design study which is varied between two or more subjects in the study
study intervention
a process that achieves a training objective
training process
is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person
service provider role
A specimen that has been intentionally physically modified.
processed specimen
An objective specification which is fulfilled by the provision of some training.
training objective
A label that is part of a categorical datum and that indicates the value of the data item on the categorical scale.
categorical label
a directive information entity that describes the dose that will be administered to a target
dose specification
A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study.
questionnaire
a material transformation objective aims to create genetically modified organism or cell
genetic transformation objective
An age measurement datum that is the result of the measurement of the age of an organism since planting, the process of placing a plant in media (e.g. soil) to allow it to grow, which excludes sowing.
age since planting measurement datum
An age measurement datum that is the result of the measurement of the age of an organism since germination, the process consisting of physiological and developmental changes by a seed, spore, pollen grain (microspore), or zygote that occur after release from dormancy, and encompassing events prior to and including the first visible indications of growth.
age since germination measurement datum
An age measurement datum that is the result of the measurement of the age of an organism since sowing, the process of placing a seed or spore in some media with the intention to invoke germination.
age since sowing measurement datum
A time measurement datum that is the result of measurement of age of an organism
age measurement datum
an objective specification to generate a population or type of organism within species that have some uniform behavioral, morphological, physiological, or genetic characteristics with similarly bred organisms.
selective organism creation objective
An organism that is bred to have some uniform behavioral, morphological, physiological, or genetic characteristics with similarly bred organisms
selectively maintained organism
A study design in which the pathological condition of a part, organ, or system of an organism is studied. The etiology may be from infection, genetic defect, or environmental stress.
disease state design
A study design that assays differences between multiple strains, cultivars, serovars, isolates, lines from organisms of a single species.
strain comparison design
A scalar measurement datum that represents the number of events occuring over a time interval
rate measurement datum
A measurement datum that is the measure of the latitude coordinate of a site.
latitude coordinate measurement datum
A measurement datum that is the measure of the longitude coordinate of a site.
longitude coordinate measurement datum
An information content entity that is inferred from data.
conclusion based on data
A value specification that is specifies one category out of a fixed number of nominal categories
categorical value specification
1
1
A value specification that consists of two parts: a numeral and a unit label
scalar value specification
An information content entity that specifies a value within a classification scheme or on a quantitative scale.
value specification
An organization that provides funding support for projects such as investigations.
grant agency
A material entity that has two or more specimens as its parts.
collection of specimens
A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the American Joint Committee on Cancer (AJCC) 7th Edition grading system.
histologic grade according to AJCC 7th edition
A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the Fuhrman Nuclear Grading System.
histologic grade according to the Fuhrman Nuclear Grading System
A categorical value specification that is a histologic grade assigned to a ovarian tumor.
histologic grade for ovarian tumor
A histologic grade for ovarian tumor that is from a two-tier histological classification of tumors.
histologic grade for ovarian tumor according to a two-tier grading system
A histologic grade for ovarian tumor that is from a histological classification by the World Health Organization (WHO).
histologic grade for ovarian tumor according to the World Health Organization
A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
pathologic primary tumor stage for lung according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
pathologic primary tumor stage for kidney according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
pathologic primary tumor stage for ovary according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
pathologic lymph node stage for colon and rectum according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
pathologic lymph node stage for lung according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
pathologic lymph node stage for kidney according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
pathologic lymph node stage for ovary according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of colon cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
pathologic distant metastases stage for colon according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
pathologic distant metastases stage for lung according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
pathologic distant metastases stage for kidney according to AJCC 7th edition
A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
pathologic distant metastases stage for ovary according to AJCC 7th edition
A categorical value specification that is an assessment of the stage of a cancer according to the American Joint Committee on Cancer (AJCC) v7 staging systems.
clinical tumor stage group according to AJCC 7th edition
A categorical value specification that is an assessment of the stage of a gynecologic cancer according to the International Federation of Gynecology and Obstetrics (FIGO) staging systems.
International Federation of Gynecology and Obstetrics cervical cancer stage value specification
A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the FIGO classification system.
International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
A categorical value specification that is an assessment of a participant's performance status (general well-being and activities of daily life).
performance status value specification
A performance status value specification designed by the Eastern Cooperative Oncology Group to assess disease progression and its affect on the daily living abilities of the patient.
Eastern Cooperative Oncology Group score value specification
A performance status value specification designed for classifying patients 16 years of age or older by their functional impairment.
Karnofsky score vaue specification
A person or organization that provides material supplies to other people or organizations.
material supplier
A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
organism
organism
A material entity that has the specimen role.
specimen
data transformation
A planned process that produces output data from input data.
data transformation
is a data transformation : leave-one-out cross-validation (LOOCV) involves using a single observation from the original sample as the validation data, and the remaining observations as the training data. This is repeated such that each observation in the sample is used once as the validation data
leave one out cross validation method
A k-means clustering is a data transformation which achieves a class discovery or partitioning objective, which takes as input a collection of objects (represented as points in multidimensional space) and which partitions them into a specified number k of clusters. The algorithm attempts to find the centers of natural clusters in the data. The most common form of the algorithm starts by partitioning the input points into k initial sets, either at random or using some heuristic data. It then calculates the mean point, or centroid, of each set. It constructs a new partition by associating each point with the closest centroid. Then the centroids are recalculated for the new clusters, and the algorithm repeated by alternate applications of these two steps until convergence, which is obtained when the points no longer switch clusters (or alternatively centroids are no longer changed).
k-means clustering
A hierarchical clustering is a data transformation which achieves a class discovery objective, which takes as input data item and builds a hierarchy of clusters. The traditional representation of this hierarchy is a tree (visualized by a dendrogram), with the individual input objects at one end (leaves) and a single cluster containing every object at the other (root).
hierarchical clustering
A dimensionality reduction is data partitioning which transforms each input m-dimensional vector (x_1, x_2, ..., x_m) into an output n-dimensional vector (y_1, y_2, ..., y_n), where n is smaller than m.
dimensionality reduction
A principal components analysis dimensionality reduction is a dimensionality reduction achieved by applying principal components analysis and by keeping low-order principal components and excluding higher-order ones.
principal components analysis dimensionality reduction
An planned process that creates images, diagrams or animations from the input data.
data visualization
An objective specification to transformation input data into output data
data transformation objective
An averaging data transformation is a data transformation that has objective averaging.
averaging data transformation
A partitioning data transformation is a data transformation that has objective partitioning.
partitioning data transformation
A partitioning objective is a data transformation objective where the aim is to generate a collection of disjoint non-empty subsets whose union equals a non-empty input set.
partitioning objective
A class discovery data transformation (sometimes called unsupervised classification) is a data transformation that has objective class discovery.
class discovery data transformation
A center calculation objective is a data transformation objective where the aim is to calculate the center of an input data set.
center calculation objective
A class discovery objective (sometimes called unsupervised classification) is a data transformation objective where the aim is to organize input data (typically vectors of attributes) into classes, where the number of classes and their specifications are not known a priori. Depending on usage, the class assignment can be definite or probabilistic.
class discovery objective
A class prediction objective (sometimes called supervised classification) is a data transformation objective where the aim is to create a predictor from training data through a machine learning technique. The training data consist of pairs of objects (typically vectors of attributes) and
class labels for these objects. The resulting predictor can be used to attach class labels to any valid novel input object. Depending on usage, the prediction can be definite or probabilistic. A classification is learned from the training data and can then be tested on test data.
class prediction objective
A center calculation data transformation is a data transformation that has objective of center calculation.
center calculation data transformation
A cross validation objective is a data transformation objective in which the aim is to partition a sample of data into subsets such that the analysis is initially performed on a single subset, while the other subset(s) are retained for subsequent use in confirming and validating the initial analysis.
cross validation objective
A data visualization which has input of a clustered data set and produces an output of a report graph which is capable of rendering data of this type.
clustered data visualization
A pool of specimens is a mixture of a population of samples which have been gathered from one or more sample populations, obtained by the physical process of mixing individual specimens, e.g. mixing the DNA collected from the individual fish.
pool of specimens
study design
A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.
study design
A randomized complete block design is_a study design which assigns randomly treatments to block. The number of units per block equals the number of treatment so each block receives each treatment exactly once (hence the qualifier 'complete'). The design was originally devised from field trials used in agronomy and agriculture. The analysis assumes that there is no interaction between block and treatment. The method was then used in other settings So The randomised complete block design is a design in which the subjects are matched according to a variable which the experimenter wishes to control. The subjects are put into groups (blocks) of the same size as the number of treatments. The members of each block are then randomly assigned to different treatment groups.
randomized complete block design
Latin square design is_a study design which allows in its simpler form controlling 2 levels of nuisance variables (also known as blocking variables).he 2 nuisance factors are divided into a tabular grid with the property that each row and each column receive each treatment exactly once.
latin square design
1
A process by which a substance is intentionally given to an organism resulting in exposure of the organism to that substance.
administering substance in vivo
a material that is added to another one in a material combination process
material to be added
A material entity into which another is being added in a material combinatino process
target of material addition
A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
disease
The totality of all processes through which a given disease instance is realized.
disease course
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
quality (PATO)
trait
quality
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
PATOC:GVG
A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.
velocity
speed
A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.
Wikipedia:http://en.wikipedia.org/wiki/Velocity
A time quality inhering in a bearer by virtue of how long the bearer has existed.
age
A composite chromatic quality composed of hue, saturation and intensity parts.
colour
relative color
color
A composite chromatic quality composed of hue, saturation and intensity parts.
PATOC:GVG
A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.
composed of
compositionality
content
structure, composition
composition
A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.
PATOC:GVG
A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
concentration
concentration of
A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
Wikipedia:http://en.wikipedia.org/wiki/concentration
A physical quality inhering in a bearer by virtue of the bearer's orientation in space.
direction
A physical quality inhering in a bearer by virtue of the bearer's orientation in space.
thesaurus.maths:thesaurus.maths
A quality that is the extent of space between two entities.
distance
A quality that is the extent of space between two entities.
PATOC:GVG
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
frequency
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
Wikipedia:http://en.wikipedia.org/wiki/frequency
A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced
impenetrability
toughness
hardness
A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force.
intensity
morphology
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
morphology
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
PATOC:GVG
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
relational shape quality
shape
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
PATOC:GVG
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.
temporal
incidence
occurrence
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.
PATOC:GVG
A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.
distribution
pattern
spatial pattern
A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.
PATOC:GVG
qualitative
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
deviation (from_normal)
The number of entities of this type that are part of the whole organism.
presence or absence in organism
quantitative
count in organism
number
presence
amount
The number of entities of this type that are part of the whole organism.
PATOC:GVG
A quality that exists by virtue of being a particular point in the time of a cycle.
phase
A quality that exists by virtue of being a particular point in the time of a cycle.
PATOC:GVG
A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.
sensitivity
sensitivity toward
A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.
PATOC:GVG
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
size
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
WordNet:WordNet
A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
height
A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
PATOC:GVG
length
A 1-D extent quality which is equal to the distance between two points.
length
A 1-D extent quality which is equal to the distance between two points.
PATOC:GVG
mass
A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
mass
A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
PATOC:GVG
A physical quality inhering in a bearer that has mass near a gravitational body. Important usage note: Note that this ontology has a class for a similar concept, mass (PATO:0000125). Mass and weight are not equivalent. For most use cases, the class mass is strongly preferred over weight.
weight
A physical quality inhering in a bearer that has mass near a gravitational body. Important usage note: Note that this ontology has a class for a similar concept, mass (PATO:0000125). Mass and weight are not equivalent. For most use cases, the class mass is strongly preferred over weight.
Wikipedia:http://en.wikipedia.org/wiki/Weight
https://en.wikipedia.org/wiki/Mass#Weight_vs._mass
A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.
angular placement
amount of rotation
angle
angular magnitude
plane angle
orientation
A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.
PATOC:JE
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
location
placement
relational spatial quality
position
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
PATOC:GVG
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
conformation
relational structural quality
structure
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
PATOC:GVG
conformation
VT:1000738
A physical quality of the thermal energy of a system.
temperature
A physical quality of the thermal energy of a system.
PATOC:GVG
A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
texture
A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
PATOC:GVG
A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit.
threshold
A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit.
PATOC:GVG
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
rate
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
PATOC:melissa
A quality in which events occur in sequence.
time
A quality in which events occur in sequence.
PATOC:GVG
A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development.
maturity
A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development.
Merriam-Webster:Merriam-Webster
A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
fertility
A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
PATOC:GVG
A color that lacks any hues as parts.
black
A color that lacks any hues as parts.
PATOC:GVG
An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths.
whitish
white
An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths.
Dictionary:http://dictionary.reference.com/
A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers.
yellow
A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers.
Dictionary:http://dictionary.reference.com/
A hardness quality of being rigid and resistant to pressure.
firm
impenetrable
tough
hard
A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature.
plate-like
flat
A size quality which is relatively low.
hypoplasia
underdeveloped
reduced
small
tiny
decreased size
A thickness which is relatively low.
low thickness
slender
thin
decreased thickness
A texture quality inhering in a bearer by virtue of the bearer's irregular surface.
coarse
rough
A texture quality inhering in a bearer by virtue of the bearer's irregular surface.
PATOC:GVG
A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
thickness
A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
WordNet:WordNet
A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
volume
A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
PATOC:GVG
A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
breadth
width
A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
PATOC:GVG
A color between white and black colors.
plumbeous
grey
A color between white and black colors.
http://en.wikipedia.org/wiki/Grey
A color consisting of dark orange, red, of very low intensity.
brown
A color consisting of dark orange, red, of very low intensity.
Wikipedia:http://en.wikipedia.org/wiki/Brown
An optical quality which obtains by virtue of the ability of the bearer to absorb visible light.
opacity
An optical quality which obtains by virtue of the ability of the bearer to absorb visible light.
PATOC:GVG
A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy.
non-transparent
clouding
cloudy
opaque
A optical quality inhering in a bearer by virtue of the bearer's lacking opacity.
clear
hyaline
transparent
A optical quality inhering in a bearer by virtue of the bearer's lacking opacity.
PATOC:GVG
A structure quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices.
porosity
A structure quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices.
PATOC:GVG
A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices.
porous
A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow.
viscosity
A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity.
viscous
physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
relational physical quality
physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATOC:GVG
A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
density
mass density
A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
WordNet:WordNet
A physical quality inhering in a bearer by virtue of the bearer's capacity to do work.
energy
A physical quality inhering in a bearer by virtue of the bearer's capacity to do work.
Wikipedia:http://en.wikipedia.org/wiki/Energy
A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts.
pressure
A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts.
PATOC:GVG
A physical quality which is equal to the energy transferred by a force to a moving object.
W
work
A physical quality which is equal to the energy transferred by a force to a moving object.
Wikipedia:http://en.wikipedia.org/wiki/Work
A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input.
efficiency
A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input.
WordNet:WordNet
A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.
force amplitude
force
A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.
thesaurus.maths:thesaurus.maths
A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.
elongated
A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel.
linear
A quality which inheres in an process.
quality of a process
quality of occurrent
quality of process
relational quality of occurrent
process quality
A quality which inheres in an process.
PATOC:GVG
physical object quality
A quality which inheres in a continuant.
monadic quality of a continuant
multiply inhering quality of a physical entity
quality of a continuant
quality of a single physical entity
quality of an object
quality of continuant
monadic quality of an object
monadic quality of continuant
physical object quality
A quality which inheres in a continuant.
PATOC:GVG
A color consisting of yellow hue and high brightness.
blond
light yellow
A color consisting of yellow hue and high brightness.
PATOC:GVG
A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
electromagnetic (EM) radiation quality
An EM radiation quality that is independent of the EM wavelength range.
full-spectrum EM radiation quality
An EM radiation quality that is independent of the EM wavelength range.
PATOC:GVG
A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation.
radiation reflective quality
A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation.
PATOC:GVG
A reflective quality restricted to a particular wavelength.
albedo
A reflective quality restricted to a particular wavelength.
PATOC:cjm
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
optical quality
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
PATOC:GVG
A temperature which is relatively high.
high temperature
hot
increased temperature
A temperature which is relatively low.
cold
low temperature
decreased temperature
A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.
period
time
duration
A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.
PATOC:mellybelly
A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.
area
A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.
Wikipedia:http://en.wikipedia.org/wiki/Area
A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology.
amorphous
A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
diameter
A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
Wikipedia:http://en.wikipedia.org/wiki/Diameter
A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area.
area density
A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area.
Wikipedia:http://en.wikipedia.org/wiki/Area_density
A density quality which is equal to the mass exerting an influence on a one-dimensional object.
linear density
A density quality which is equal to the mass exerting an influence on a one-dimensional object.
Wikipedia:http://en.wikipedia.org/wiki/Linear_density
A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume.
volumetric density
A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume.
Wikipedia:http://en.wikipedia.org/wiki/Mass_density
A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.
convex
A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.
PATOC:GVG
A structural quality inhering in a bearer by virtue of the bearer's having distinct structure.
structured
A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure.
unstructured
A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base.
medium acidity
A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base.
chemicool:chemicool
An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
reproductive quality
An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
WordNet:WordNet
A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen.
sensitivity to oxygen
A quality inhering in a bearer by virtue of the bearer's independence on oxygen.
anaerobic
A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential.
electric potential
A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential.
Wikipedia:http://en.wikipedia.org/wiki/Electric_potential
A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.
proportion
proportionality
quotient
ratio
rate
proportionality to
A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.
PATOC:nw
A position which is relatively high.
high position
increased position
A positional which is relatively low.
low position
decreased position
A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.
sloped
A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded.
complexity
A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded.
WordNet:WordNet
A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded.
complex
A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded.
WordNet:WordNet
A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking.
flexibility
A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking.
stiff
stiffness
inflexible
A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable.
solidity
quality of a solid
A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape.
gaseous
quality of a gas
A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape.
Chemistry:http://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm
PATOC:GVG
A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.
liquidity
quality of a liquid
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
extra or missing physical or functional parts
has or lacks parts of type
mereological quality
number of
cardinality
number
has number of
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
PATOC:CJM
A mass which is higher than normal or average.
high mass
large mass
increased mass
A physical quality inhering in a bearer by virtue of the bearer's motion characteristic.
flow rate
A physical quality inhering in a bearer by virtue of the bearer's motion characteristic.
WordNet:WordNet
A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium.
conductivity
A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium.
PATOC:GVG
A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending.
curvature
A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimension.
depth
A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimension.
WordNet:WordNet
A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution.
osmolarity
A osmolarity which is relatively high.
high osmolarity
increased osmolarity
A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.
elevation
A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.
Trailillustrated:Trailillustrated
An elevation which is relatively high.
high elevation
elevated
increased elevation
An elevation which is relatively low.
low elevation
decreased elevation
A viscosity which relatively high.
high viscosity
increased viscosity
A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development.
mature
A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development.
Merriam-Webster:Merriam-Webster
A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
1-D size
1-D extent
A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
PATOC:GVG
A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions.
2-D size
2-D extent
A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions.
PATOC:GVG
A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.
3D size
3-D extent
A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.
PATOC:GVG
An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process.
shedability
A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous.
semi-deciduous(plant)
A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
radiation quality
A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity.
electrical conductivity
A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity.
Wikipedia:http://en.wikipedia.org/wiki/Electrical_conduction
A composition quality inhering in a bearer by virtue of the bearer's containing granules.
granular
A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations.
multi-focal
multi-localised
A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations.
PATOC:GVG
A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid.
wetness
A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid.
wordreference.com:wordreference.com
A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid.
wet
A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid.
PATOC:GVG
A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid.
dry
A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid.
PATOC:GVG
A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions).
pH
acidity
A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions).
biology-online:biology-online
A shape quality in a bearer by virtue of the bearer's curving inward.
concave
A shape quality in a bearer by virtue of the bearer's curving inward.
WordNet:WordNet
A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section.
rod-like
rod-shaped
tubulate
cylindrical
A physical quality inhering in a bearer by virtue of the bearer's participation in movement.
movement quality
A physical quality inhering in a bearer by virtue of the bearer's participation in movement.
PATOC:GVG
A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point.
frozen
A quality that inheres in an entire organism or part of an organism.
organismal quality
A quality that inheres in an entire organism or part of an organism.
PATOC:CJM
Surface shape that refers to the inward or outward curvature of the surface.
concavity
Surface shape that refers to the inward or outward curvature of the surface.
PATOC:MAH
A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.
convex 3-D shape
A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas.
structure, cavities
physical quality of a process
A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration.
stratification
A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration.
stratified
A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within.
hollow
A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer.
laminar
sloped downward
A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles.
straight
A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles.
merriam-webster:merriam-webster
A positional quality inhering in a bearer by virtue the bearer's being changed in position.
displaced
A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
relational molecular quality
molecular quality
A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
PATOC:GVG
A quality inhering in a bearer by virtue of its constitution.
quality of a substance
A quality inhering in a bearer by virtue of its constitution.
PATOC:GVG
A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge.
plate-like
platelike
A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane.
compressed
flattened
A shape that inheres in a 3 dimensional entity.
3-D shape
A cylindrical shape that is hollow.
tube like
tube-shaped
tubulate
tubular
A quality that has a value that is increased compared to normal or average.
increased quality
A quality that has a value that is decreased compared to normal or average.
decreased quality
A quality of an object that has a value that is decreased compared to normal or average.
decreased object quality
A quality of an object that has a value that is increased compared to normal or average.
increased object quality
A temporal distribution pattern of process occurrences within a regulation/reference process.
temporal distribution quality
A temporal distribution pattern of process occurrences within a regulation/reference process.
PATOC:LC
An orientation inhering in a bearer by virtue of the bearer's placement at an angle.
angle
An orientation inhering in a bearer by virtue of the bearer's placement at an angle.
PATOC:GVG
A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content.
humidity
A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content.
https://github.com/pato-ontology/pato/issues/90
An increase in humidity.
humid
increased humidity
The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids.
combustibility
The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)
rate of occurence
The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)
https://orcid.org/0000-0002-9943-9018
A quality of a substance on which or through which electromagnetic radiation impinges or traverses with respect to radiation. This substance quality changes the quality of the incident radiation with respect to any of: intensity, direction, scatter and wavelength.
quality of interaction of a substance with electromagnetic radiation
A quality of a substance on which or through which electromagnetic radiation impinges or traverses with respect to radiation. This substance quality changes the quality of the incident radiation with respect to any of: intensity, direction, scatter and wavelength.
https://orcid.org/0000-0002-5111-7263
A material entity that consists of two or more organisms, viruses, or viroids.
collection of organisms
A collection of organisms, all of the same species, that live in the same place.
population of organisms
A multi-species collection of organisms of at least two different species, living in a particular area. Must have at least two populations of different species as members.
ecological community
A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.
single-species collection of organisms
A collection of organisms that consists of two or more organisms from at least two species.
multi-species collection of organisms
A material entity that is one or more organisms, viruses or viroids.
organismal entity
A plant experimental condition (PECO:0007359) or set of conditions describing the application of an abiotic (PECO:0007191) or biotic plant exposure (PECO:0007357) or the combinatorial application thereof.
plant treatment (narrow)
plant exposure
A plant experimental condition (PECO:0007359) or set of conditions describing the application of an abiotic (PECO:0007191) or biotic plant exposure (PECO:0007357) or the combinatorial application thereof.
PECO:cooperl
A fungal plant exposure (PECO:0007233) involving the exposure of plant to the pathogen belonging to Glomeromyetes class.
Glomeromycota treatment (narrow)
Glomeromycota exposure
A fungal plant exposure (PECO:0007233) involving the exposure of plant to the pathogen belonging to Glomeromyetes class.
PECO:laura_moore
A Glomeromycota exposure (PECO:0001058) involving the exposure of compatible plants to mutualistic arbuscular mycorrhizal fungi.
arbuscular mycorrhizal fungal treatment (narrow)
arbuscular mycorrhizal fungal exposure
A Glomeromycota exposure (PECO:0001058) involving the exposure of compatible plants to mutualistic arbuscular mycorrhizal fungi.
PECO:laura_moore
loam content treatment (narrow)
loam content exposure
An exposure involving growing plants in soil growth media with varying contents.
soil environment treatment (narrow)
soil environment exposure
An exposure involving growing plants in soil growth media with varying contents.
Gramene:pankaj_jaiswal
An exposure involving growing plants in varying textures of soil growth media.
soil texture treatment (narrow)
soil texture exposure
An exposure involving growing plants in varying textures of soil growth media.
Gramene:pankaj_jaiswal
An exposure involving growing plants in a sandy soil growth media.
sand content treatment (narrow)
sand content exposure
An exposure involving growing plants in a sandy soil growth media.
PECO:cooperl
An exposure involving growing plants in a growth media containing organic matter.
organic matter content treatment (narrow)
organic matter content exposure
An exposure involving growing plants in a growth media containing organic matter.
PECO:cooperl
An exposure involving growing plants in a silty soil growth media.
silt content treatment (narrow)
silt content exposure
An exposure involving growing plants in a silty soil growth media.
PECO:cooperl
An exposure involving growing plants in a clay soil growth media.
clay content treatment (narrow)
clay content exposure
An exposure involving growing plants in a clay soil growth media.
PECO:cooperl
An abiotic plant exposure (PECO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples.
plant growth medium treatment (narrow)
plant growth medium exposure
An abiotic plant exposure (PECO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples.
Gramene:pankaj_jaiswal
PECO:cooperl
A plant exposure (PECO:0001001) involving the application of chemical or non-biological factors.
abiotic plant treatment (narrow)
abiotic plant exposure
A plant exposure (PECO:0001001) involving the application of chemical or non-biological factors.
Gramene:pankaj_jaiswal
PECO:cooperl
A biotic plant exposure (PECO:0007357) involving exposure of a plant to a fungus or a combination of fungi.
fungal plant treatment (narrow)
fungal plant exposure
A biotic plant exposure (PECO:0007357) involving exposure of a plant to a fungus or a combination of fungi.
Gramene:ivy
NCBI_taxid:4751
A plant exposure (PECO:0001001) involving the application of a biotic or biological factor such as a microbe, insect, animal, or plant or a combination thereof.
biotic plant treatment (narrow)
biotic plant exposure
A plant exposure (PECO:0001001) involving the application of a biotic or biological factor such as a microbe, insect, animal, or plant or a combination thereof.
Gramene:pankaj_jaiswal
PECO:cooperl
A plant exposure (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response.
plant treatment ontology (related)
treatment ontology (related)
plant experimental condition
A plant exposure (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response.
Gramene:pankaj_jaiswal
PECO:cooperl
A plant structure (PO:0005679) which is a whole organism.
genet (broad)
ramet (broad)
PO_GIT:538
PO_GIT:69
planta entera (Spanish, exact)
植物体全体 (Japanese, exact)
bush (narrow)
frutex (narrow)
frutices (narrow)
gametophyte (narrow)
herb (narrow)
liana (narrow)
prothalli (narrow)
prothallium (narrow)
prothallus (narrow)
seedling (narrow)
shrub (narrow)
sporophyte (narrow)
suffrutex (narrow)
suffrutices (narrow)
tree (narrow)
vine (narrow)
woody clump (narrow)
plant_anatomy
clonal colony (related)
colony (related)
PO:0000003
Examples include plant embryo (PO:0009009), megagametophyte (PO:0025279) and microgametophyte (PO:0025280).
whole plant
A plant structure (PO:0005679) which is a whole organism.
POC:curators
planta entera (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物体全体 (Japanese, exact)
NIG:Yukiko_Yamazaki
frutex (narrow)
FNA:e4dde193-57f7-4ab9-9d25-96b4ca0088ba
frutices (narrow)
FNA:ec8c2064-2a67-43d7-8e14-aecfef5cf33b
prothalli (narrow)
FNA:4b610104-1bb0-4c6b-9bb9-e3cc61d11ac0
prothallus (narrow)
FNA:f8f31520-e4bc-4430-9274-8dd3cee7ffd8
suffrutex (narrow)
FNA:99508f62-7116-4e2b-90c0-19ff55ebd967
suffrutices (narrow)
FNA:ba1b1bd5-75bd-4195-b11c-3aba08da08c2
woody clump (narrow)
FNA:c1ccca7d-2a98-4a9d-8603-c34b551935e0
A floral structure primordium (PO:0025477) that is committed to the development of an ovule (PO:0020003).
PO_GIT:465
portion of ovule primordium tissue (exact)
primordio de óvulo (Spanish, exact)
胚珠原基(可視的) (Japanese, exact)
plant_anatomy
PO:0000018
The transition from ovule primordium to ovule occurs when an integument (PO:0020021) begins to develop from the protoderm (PO:0006210).
ovule primordium
A floral structure primordium (PO:0025477) that is committed to the development of an ovule (PO:0020003).
ISBN:0471245208
POC:curators
primordio de óvulo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
胚珠原基(可視的) (Japanese, exact)
NIG:Yukiko_Yamazaki
A floral structure primordium (PO:0025477) that is committed to the development of a gynoecium (PO:0009062).
PO_GIT:465
pistil primordium (exact)
portion of gynoecium primordium tissue (exact)
primordio de gineceo (Spanish, exact)
雌蕊原基(可視的) (Japanese, exact)
plant_anatomy
PO:0000019
Use carpel primordium (PO:0004703) for the primordium (PO:0025127) of an individual carpel (PO:0009030).
gynoecium primordium
A floral structure primordium (PO:0025477) that is committed to the development of a gynoecium (PO:0009062).
POC:curators
primordio de gineceo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
雌蕊原基(可視的) (Japanese, exact)
NIG:Yukiko_Yamazaki
A shoot axis (PO:0025029) that is the most distal part of a shoot system (PO:0009006) and has as parts a shoot apical meristem (PO:0020148) and the youngest primordia (PO:0025127).
PO_GIT:234
ápice del epiblasto (epiblastema) (Spanish, exact)
シュート頂、茎頂 (Japanese, exact)
plant_anatomy
PO:0000037
shoot axis apex
A shoot axis (PO:0025029) that is the most distal part of a shoot system (PO:0009006) and has as parts a shoot apical meristem (PO:0020148) and the youngest primordia (PO:0025127).
POC:curators
ápice del epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
シュート頂、茎頂 (Japanese, exact)
NIG:Yukiko_Yamazaki
An undeveloped shoot system (PO:0009006).
yema (Spanish, exact)
芽 (Japanese, exact)
adventitious bud (narrow)
bud
An undeveloped shoot system (PO:0009006).
POC:curators
yema (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
芽 (Japanese, exact)
NIG:Yukiko_Yamazaki
adventitious bud (narrow)
FNA:0eed275a-5dae-414a-bf36-81a08e6c6ba9
A portion of meristem tissue (PO:0009013) which is the organogenic region of the meristem, characterized by higher rates of cell division.
zona periférica (Spanish, exact)
周辺帯 (Japanese, exact)
plant_anatomy
peripheral meristem (related)
PO:0000225
peripheral zone
A portion of meristem tissue (PO:0009013) which is the organogenic region of the meristem, characterized by higher rates of cell division.
ISBN:0521288959
TAIR_curator:Leonore_Reiser
zona periférica (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
周辺帯 (Japanese, exact)
NIG:Yukiko_Yamazaki
A portion of reproductive shoot apical meristem tissue (PO:0008028) that gives rise to the floral organs (PO:0025395).
PO:0006329
PO:0006373
PO:0006374
PO:0025091
floral meristem (exact)
mersitema floral (Spanish, exact)
花芽分裂組織 (Japanese, exact)
Poaceae floret meristem (narrow)
ear floret meristem (narrow)
floret meristem (narrow)
tassel floret meristem (narrow)
plant_anatomy
floral apical meristem (related)
PO:0000229
In Zea mays and other grasses, the floret meristem is part of a spikelet and develops into a specific type of floret. If you are annotating to this structure for Zea mays or other grasses, please also add an annotation to the spikelet type that the meristem is part of. Choose the most specific term possible from: spikelet (PO:0009051), ear spikelet (PO:0006320), ear pedicellate spikelet (PO:0006348), ear sessile spikelet (PO:0006349), tassel spikelet (PO:0006309), tassel pedicellate spikelet (PO:0006312), tassel sessile spikelet (PO:0006311).
flower meristem
A portion of reproductive shoot apical meristem tissue (PO:0008028) that gives rise to the floral organs (PO:0025395).
Gramene:Pankaj_Jaiswal
POC:curators
mersitema floral (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
花芽分裂組織 (Japanese, exact)
NIG:Yukiko_Yamazaki
A reproductive shoot system development stage (PO:0025530) that has as primary participant a inflorescence (PO:0009049).
PO_GIT:517
plant_structure_development_stage
panicle development (related)
PO:0001083
inflorescence development stage
A reproductive shoot system development stage (PO:0025530) that has as primary participant a inflorescence (PO:0009049).
POC:Laurel_Cooper
panicle development (related)
GRO:0007157
A native plant cell (PO:0025606) synthesizing protoplasm and producing new cells by division and with only a primary cell wall.
CL:0000034
PO_GIT:272
célula meristemática (Spanish, exact)
stem cell (exact)
分裂組織細胞 (Japanese, exact)
plant_anatomy
PO:0004010
meristematic cell
A native plant cell (PO:0025606) synthesizing protoplasm and producing new cells by division and with only a primary cell wall.
ISBN:0471245208
POC:Laurel_Cooper
célula meristemática (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
分裂組織細胞 (Japanese, exact)
NIG:Yukiko_Yamazaki
A swollen shoot axis (PO:0025029) that grows horizontally at or below the substrate surface and produces shoots above and roots or rhizoids below.
PO_GIT:142
rizoma (Spanish, exact)
根茎=root stock (Japanese, exact)
plant_anatomy
rootstock (related)
PO:0004542
In ferns and many monocots, a rhizome is a primary axis (stem), while in other species, it is a branch. Usually produces scale-like leaves.
rhizome
A swollen shoot axis (PO:0025029) that grows horizontally at or below the substrate surface and produces shoots above and roots or rhizoids below.
POC:curators
rizoma (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
根茎=root stock (Japanese, exact)
NIG:Yukiko_Yamazaki
rootstock (related)
FNA:7a04b02c-8ac5-410a-99cd-b68ba80e8f14
A shoot axis (PO:0025029) that develops from a branch (PO:0025073) and is radially enlarged for storage.
diaspore (broad)
PO_GIT:127
shoot axis branch tuber (exact)
tubérculo (Spanish, exact)
tuber branch (exact)
シュート軸塊茎 (Japanese, exact)
plant_anatomy
PO:0004543
Functions in storage of photosynthate metabolites. This term should be used for tubers derived from branches, as found in Solanum spp. (e.g. potato) or Dioscorea spp. (e.g. yam) and other species. Use the term tuberous root tuber (PO:0025476) for tubers derived from roots, such as those found in Cassava, Ipomoea, or Hemerocallis.
shoot axis tuber
A shoot axis (PO:0025029) that develops from a branch (PO:0025073) and is radially enlarged for storage.
POC:Laurel_Cooper
POC:curators
shoot axis branch tuber (exact)
POC:curators
tubérculo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
シュート軸塊茎 (Japanese, exact)
NIG:Yukiko_Yamazaki
A shoot system that is initiated from a shoot.
sucker (broad)
turion (broad)
sistema de epiblasto (epiblastema) que nace en el epiblasto (epiblastema) (Spanish, exact)
シュート由来苗条系 (Japanese, exact)
branch (related)
shoot-borne shoot system
A shoot system that is initiated from a shoot.
POC:curators
turion (broad)
FNA:da7c2bd5-34b4-42aa-a036-7b5f71f66d36
sistema de epiblasto (epiblastema) que nace en el epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
シュート由来苗条系 (Japanese, exact)
NIG:Yukiko_Yamazaki
A shoot-borne shoot system (PO:0004546) developing from a stem (PO:0009047).
stem sucker (exact)
tallo epicórmico (Spanish, exact)
後生枝 (Japanese, exact)
epicormic shoot system
A shoot-borne shoot system (PO:0004546) developing from a stem (PO:0009047).
POC:curators
tallo epicórmico (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
後生枝 (Japanese, exact)
NIG:Yukiko_Yamazaki
A shoot axis tuber (PO:0004543) that develops below ground.
PO_GIT:615
tubérculo subterráneo (Spanish, exact)
地下塊茎 (Japanese, exact)
plant_anatomy
PO:0004547
Functions in storage of photosynthate metabolites. This term should be used for tubers derived from branches, as found in Solanum spp. (e.g. potato) or Dioscorea spp. (e.g. yam) and other species. Use the term tuberous root tuber (PO:0025476) for tubers derived from roots, such as those found in Cassava, Ipomoea, or Hemerocallis.
subterranean shoot axis tuber
A shoot axis tuber (PO:0004543) that develops below ground.
POC:Laurel_Cooper
POC:curators
tubérculo subterráneo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
地下塊茎 (Japanese, exact)
NIG:Yukiko_Yamazaki
A phyllome primordium (PO:0025128) that develops from a carpel anlagen (PO:0006005) and is committed to the development of a carpel (PO:0009030).
PO_GIT:465
PO_GIT:466
carpel primordia (exact, plural)
portion of carpel primordium tissue (exact)
primordio de carpelo (Spanish, exact)
心皮原基(可視的) (Japanese, exact)
plant_anatomy
PO:0004703
carpel primordium
A phyllome primordium (PO:0025128) that develops from a carpel anlagen (PO:0006005) and is committed to the development of a carpel (PO:0009030).
POC:curators
primordio de carpelo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
心皮原基(可視的) (Japanese, exact)
NIG:Yukiko_Yamazaki
A bud (PO:0000055) that develops from an axillary bud meristem (PO:0000232).
yema axilar (Spanish, exact)
腋芽 (Japanese, exact)
axillary bud
A bud (PO:0000055) that develops from an axillary bud meristem (PO:0000232).
POC:curators
yema axilar (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
腋芽 (Japanese, exact)
NIG:Yukiko_Yamazaki
An axillary shoot system (PO:0006343) that is part of a stem base (PO:0008039).
epiblasto (epiblastema) axilar basal (Spanish, exact)
基底腋枝系 (Japanese, exact) (exact)
tiller (narrow)
basal axillary branch (related)
ratoon (related)
basal axillary shoot system
An axillary shoot system (PO:0006343) that is part of a stem base (PO:0008039).
Gramene:Anuradha_Pujar
POC:Laurel_Cooper
epiblasto (epiblastema) axilar basal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
基底腋枝系 (Japanese, exact) (exact)
NIG:Yukiko_Yamazaki
A cardinal organ part (PO:0025001) of a shoot axis (PO:0025029) that is between two shoot axis nodes (PO:0005004).
PO_GIT:146
internodo del epiblasto (epiblastema) (Spanish, exact)
シュート節間 (Japanese, exact)
plant_anatomy
PO:0005005
shoot axis internode
A cardinal organ part (PO:0025001) of a shoot axis (PO:0025029) that is between two shoot axis nodes (PO:0005004).
POC:Laurel_Cooper
POC:curators
internodo del epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
シュート節間 (Japanese, exact)
NIG:Yukiko_Yamazaki
A primordium (PO:0025127) that develops from a root anlagen (PO:0025433) and is committed to the development of a root (PO:0009005).
PO_GIT:467
portion of root primordium tissue (exact)
primordio de raíz (Spanish, exact)
root primordia (exact, plural)
根原基(可視的) (Japanese, exact)
plant_anatomy
PO:0005029
A root primordium may arise from cells of a pericycle (PO:0006203) in a root in most seed plant (pericyclic lateral root primordium; PO:0025492), from cells of an endodermis (PO:0000252) in ferns and some seed plants (non-pericyclic lateral root primordium: PO:0025493), or from cells of a shoot axis (PO:0025029), in the case of a basal root primordium (PO:0025479) or shoot-borne root primordium (PO:0025480). Transition from root primordium to root occurs with the formation of a root cap (PO:0020123), shortly after the development of a root apical meristem (PO:0020147).
root primordium
A primordium (PO:0025127) that develops from a root anlagen (PO:0025433) and is committed to the development of a root (PO:0009005).
ISBN:0521288959
POC:curators
primordio de raíz (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
根原基(可視的) (Japanese, exact)
NIG:Yukiko_Yamazaki
A lateral plant organ (PO:0009008) produced by a shoot apical meristem (PO:0020148).
filoma (Spanish, exact)
フィロム、葉(的)器官 (Japanese, exact)
plant_anatomy
PO:0006001
phyllome
A lateral plant organ (PO:0009008) produced by a shoot apical meristem (PO:0020148).
POC:curators
filoma (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
フィロム、葉(的)器官 (Japanese, exact)
NIG:Yukiko_Yamazaki
A phyllome anlagen (PO:0025430) that will give rise to a carpel primordium (PO:0004703) and is part of a peripheral zone (PO:000225) of a flower meristem (PO:0000229).
PO_GIT:427
esbozo de carpelo (Spanish, exact)
心皮原基 (Japanese, exact)
plant_anatomy
PO:0006005
carpel anlagen
A phyllome anlagen (PO:0025430) that will give rise to a carpel primordium (PO:0004703) and is part of a peripheral zone (PO:000225) of a flower meristem (PO:0000229).
PMID:14729915
POC:curators
esbozo de carpelo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
心皮原基 (Japanese, exact)
NIG:Yukiko_Yamazaki
A portion of meristem tissue (PO:0009013) that is part of a shoot system (PO:0009006).
PO_GIT:472
PO_GIT:583
meristema del epiblasto (epiblastema) (Spanish, exact)
シュート分裂組織 (Japanese, exact)
plant_anatomy
PO:0006079
shoot system meristem
A portion of meristem tissue (PO:0009013) that is part of a shoot system (PO:0009006).
Gramene:Pankaj_Jaiswal
POC:Laurel_Cooper
meristema del epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
シュート分裂組織 (Japanese, exact)
NIG:Yukiko_Yamazaki
A portion of meristem tissue (PO:0009013) that is the outer layer of an apical meristem (PO:0020144), or the outer layer of a plant embryo proper (PO:0000001), and gives rise to a portion of epidermis (PO:0005679).
PO_GIT:125
portion of protoderm tissue (exact)
protodermis (Spanish, exact)
前表皮、原表皮 (Japanese, exact)
plant_anatomy
dermatogen cell (related)
PO:0006210
A protoderm may or may not arise from independent initial cells (PO:0004011). Some researchers also refer to it as an epidermis in a meristematic state.
protoderm
A portion of meristem tissue (PO:0009013) that is the outer layer of an apical meristem (PO:0020144), or the outer layer of a plant embryo proper (PO:0000001), and gives rise to a portion of epidermis (PO:0005679).
ISBN:0471245208
POC:Laurel_Cooper
protodermis (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
前表皮、原表皮 (Japanese, exact)
NIG:Yukiko_Yamazaki
A reproductive shoot system (PO:0025082) that develops from an inflorescence (PO:0009049) and has as parts each infructescence axis (PO:0025242) and all of the fruits (PO:0009001) borne by those axes.
PO_GIT:260
PO_GIT:261
PO_GIT:71
infructescencia (Spanish, exact)
果序 (Japanese, exact)
banana bunch (narrow)
plant_anatomy
fruit bunch (related)
PO:0006342
infructescence
A reproductive shoot system (PO:0025082) that develops from an inflorescence (PO:0009049) and has as parts each infructescence axis (PO:0025242) and all of the fruits (PO:0009001) borne by those axes.
NYBG:Brandon_Sinn
POC:Laurel_Cooper
POC:Ramona_Walls
infructescencia (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
果序 (Japanese, exact)
NIG:Yukiko_Yamazaki
banana bunch (narrow)
CO_125:0000014
A shoot-borne shoot system (PO:0004545) that develops from an axillary bud (PO:0004709).
sistema axilar del epiblasto (epiblastema) (Spanish, exact)
腋苗条系 (Japanese, exact)
Musa sucker (narrow)
axillary branch (related)
axillary shoot system
A shoot-borne shoot system (PO:0004545) that develops from an axillary bud (PO:0004709).
POC:curators
sistema axilar del epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
腋苗条系 (Japanese, exact)
NIG:Yukiko_Yamazaki
Musa sucker (narrow)
CO_125:0000042
A plant structure development stage (PO:0009012) that has as primary participant a whole plant (PO:0000003).
PO_GIT:390
plant_structure_development_stage
Solanaceae whole plant growth stages (SGN:0000001) (related)
cereal plant growth stage ontology (GRO:0007199) (related)
maize growth stage (GRO:0007002) (related)
plant growth stages in Arabidopsis (TAIR:0000021) (related)
rice growth stage (GRO:0007040) (related)
sorghum growth stage (GRO:0007124) (related)
wheat, barley and oat growth stage (GRO:0007156) (related)
PO:0007033
whole plant development stage
A plant structure development stage (PO:0009012) that has as primary participant a whole plant (PO:0000003).
POC:curators
A shoot apical meristem (PO:0020148) that gives rise to the apical growth of reproductive tissues and organs.
PO_GIT:36
meristema apical reproductivo del epiblasto (epiblastema) (Spanish, exact)
生殖シュート頂端 分裂組織 (Japanese, exact)
plant_anatomy
PO:0008028
reproductive shoot apical meristem
A shoot apical meristem (PO:0020148) that gives rise to the apical growth of reproductive tissues and organs.
Gramene:Chih-Wei_Tung
meristema apical reproductivo del epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
生殖シュート頂端 分裂組織 (Japanese, exact)
NIG:Yukiko_Yamazaki
OBSOLETE. A young plant derived from a newly germinated seed.
vástago (Spanish, exact)
芽生え、実生 (Japanese, exact)
seedling
true
OBSOLETE. A young plant derived from a newly germinated seed.
Gramene:Chih-Wei_Tung
vástago (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
芽生え、実生 (Japanese, exact)
NIG:Yukiko_Yamazaki
A multi-tissue plant structure (PO:0025496) that develops from a gynoecium (PO:0009062), or a single carpel (PO:0009030), and at maturity may have as parts one or more seeds (PO:0009010).
PO:0020067
PO:0020068
PO:0020069
PO:0020070
PO:0020071
PO:0020072
PO:0020073
PO:0020074
PO:0020076
PO:0020077
PO:0020078
PO:0020079
PO:0020080
PO:0020082
PO:0020083
PO:0020087
PO:0020107
aggregate fruit (broad)
compound fruit (broad)
dehiscent fruit (broad)
diaspore (broad)
indehiscent fruit (broad)
multiple fruit (broad)
propagule (broad)
PO_GIT:76
frucht (exact, German)
fruto (exact, Spanish)
果実 (exact, Japanese)
coenocarp (narrow)
syncarp (narrow)
plant_anatomy
PO:0009001
A fruit (PO:0009001) may contain additional plant structures (PO:0009011) that were part of a flower (PO:0009046) and mature along with the gynoecium, such as a receptacle (PO:0009064). A fruit may develop without fertilization in cases of parthenocarpy, apomixis, or other hormone-induced conditions and may not always contain seeds (PO:0009010). When annotating to fruit (PO:0009001) that are referred to as ‘aggregate’, ‘multiple’, or ‘compound’, please annotate directly to the appropriate plant structure, such as receptacle, hypanthium (PO:0009065) or infructescence (PO:0006342). Fruits only occur in angiosperms.
fruit
A multi-tissue plant structure (PO:0025496) that develops from a gynoecium (PO:0009062), or a single carpel (PO:0009030), and at maturity may have as parts one or more seeds (PO:0009010).
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
POC:Laurel_Cooper
POC:curators
frucht (exact, German)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
fruto (exact, Spanish)
POC:Maria_Alejandra_Gandolfo
果実 (exact, Japanese)
NIG:Yukiko_Yamazaki
coenocarp (narrow)
FNA:c13b1312-1cc5-4ace-98e2-fde12aec09da
syncarp (narrow)
FNA:67fa41ae-b735-4d89-b5db-7631b873ef7a
A cell which is a plant structure (PO:0009011).
cell (broad)
GO:0005623
PO_GIT:56
célula vegetal (Spanish, exact)
植物細胞 (Japanese, exact)
plant_anatomy
PO:0009002
Applies to cells that are living or dead at maturity (e.g., fiber cell or tracheid) and includes any external encapsulating structures (if present) such as the plasma membrane and the plant-type cell wall. Definition of cell GO:0005623: "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope". GO:0009505. Definition of plant-type cell wall (GO:0009505): A more or less rigid structure lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances, synonym; exact: cellulose and pectin-containing cell wall.
plant cell
A cell which is a plant structure (PO:0009011).
GO:0005623
POC:curators
célula vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物細胞 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant axis (PO:0025004) that lacks shoot axis nodes (PO:0005004) and usually grows indeterminately.
PO:0003006
PO_GIT:578
raíz (Spanish, exact)
radices (exact, plural)
radix (exact)
根 (Japanese, exact)
aerial root (narrow)
climbing root (narrow)
plant_anatomy
PO:0009005
Roots function in the absorption of water and inorganic nutrients, anchoring the plant body to the substrate and supporting it, storage of food and nutrients, and vegetative reproduction. The roots of most vascular plant species enter into symbiosis with soil-borne microorganisms. Roots are usually positively geotropic and found underground, although there are many exceptions such as the aerial roots of orchids. Roots often form secondary thickening from the root lateral meristem (PO:0006308). Commonly thought of as one of the three basic parts of the plant body, along with the shoot axis (PO:0025029) and leaves (PO:0025034).
root
A plant axis (PO:0025004) that lacks shoot axis nodes (PO:0005004) and usually grows indeterminately.
ISBN:978-0879015329
ISBN:9780964022157
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
POC:Laurel_Cooper
POC:curators
raíz (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
radices (exact, plural)
FNA:3c46e84c-23e4-416b-91cd-2f7c42e4b13d
radix (exact)
FNA:e6315684-fc99-4976-b39d-b356c4b7e7fd
根 (Japanese, exact)
NIG:Yukiko_Yamazaki
climbing root (narrow)
FNA:bf0ce902-e91c-401a-92a8-26b20142ce5f
A collective plant organ structure (PO:0025007) that produces shoot-borne portions of meristem tissue (PO:0009013) and the plant structures (PO:0009011) that arise from them.
PO_GIT:135
sistema de epiblasto (epiblastema) (Spanish, exact)
シュート系、苗条系 (Japanese, exact)
tree crown (narrow)
plant_anatomy
Poaceae crown (related)
shoot (related)
thalli (related)
thallus (related)
PO:0009006
The shoot system is generally used to refer to the above-ground plant parts, although some plants have parts of their shoot system underground. For example, a rhizome (PO:0004542), bulb (PO:0025356), a corm (PO:0025355) or a subterranean tuber (PO:0004547), as in Solanum tuberosum (potato) or yam, are all part of the shoot system.
shoot system
A collective plant organ structure (PO:0025007) that produces shoot-borne portions of meristem tissue (PO:0009013) and the plant structures (PO:0009011) that arise from them.
POC:Laurel_Cooper
POC:curators
sistema de epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
シュート系、苗条系 (Japanese, exact)
NIG:Yukiko_Yamazaki
thalli (related)
FNA:d1431b5c-7b86-46a0-8d3c-bd426fe12c85
thallus (related)
FNA:02756ad4-a09c-48d7-8754-903254e557a9
A plant structure (PO:0009011) that consists predominantly of similarly specialized plant cells (PO:0009002) of one or more types.
portion of tissue (broad)
tissue (broad)
PO_GIT:59
porción de un tejido vegetal (Spanish, exact)
植物組織の一部 (Japanese, exact)
plant_anatomy
plant tissue (related)
PO:0009007
A portion of plant tissue may contain one or several types of cells that are organized in a specific spatial arrangement into a structural unit (which includes a mass of callus) and may include an intercellular matrix. May include other types of isolated cells, such as idioblasts.
portion of plant tissue
A plant structure (PO:0009011) that consists predominantly of similarly specialized plant cells (PO:0009002) of one or more types.
POC:curators
TAIR_curator:Leonore_Reiser
porción de un tejido vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物組織の一部 (Japanese, exact)
NIG:Yukiko_Yamazaki
A multi-tissue plant structure (PO:0025496) that is a functional unit, is a proper part of a whole plant (PO:0000003), and includes portions of plant tissue (PO:0009007) of at least two different types that derive from a common developmental path.
organ (broad)
PO_GIT:55
órgano vegetal (Spanish, exact)
植物 器官 (Japanese, exact)
plant_anatomy
compound plant organ (related)
simple plant organ (related)
PO:0009008
Examples include stem (PO:0009047), leaf (PO:0025034), and root (PO:0009005). May include individual plant cells (PO:0009002) that are not part of a portion of plant tissue (e.g., idioblasts, PO:0000283). A plant organ may have one or more different plant organs as parts, such as a sporophyll (PO:0009026) that may have as part a sporangium (PO:0025094) or a carpel (PO:0009030) that may have as part a plant ovule (PO:0020003).
plant organ
A multi-tissue plant structure (PO:0025496) that is a functional unit, is a proper part of a whole plant (PO:0000003), and includes portions of plant tissue (PO:0009007) of at least two different types that derive from a common developmental path.
POC:curators
órgano vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物 器官 (Japanese, exact)
NIG:Yukiko_Yamazaki
simple plant organ (related)
PATO:01503
A whole plant (PO:0000003) that participates in the plant embryo stage (PO:0007631).
embryo (broad)
PO_GIT:92
embrión (Spanish, exact)
植物胚 (Japanese, exact)
plant_anatomy
germ (related)
PO:0009009
A plant embryo is generally formed after the first division of a plant zygote (PO:0000423), but in the case of a nucellar (adventitious) plant embryo (PO:0004537), somatic plant embryo (PO:0025302), microspore-derived cultured plant embryo (PO:0025305), and other embryos that arise through apogamy, it begins after the division of a single cell that is not a zygote. The end of the embryo stage varies among taxa; the beginning of a seed germination stage (PO:0007057) in seed plants, formation of the first vascular leaf (PO:0009025) in pteridophytes, the beginning of development of a sporangium (PO:0025094) in bryophytes, or the beginning of the formation of a plant organ (PO:0009008) such as a root (PO:0009005), shoot axis (PO:0025029), or vascular leaf (PO:0009025) in a cultured plant embryo (PO:0000010).
plant embryo
A whole plant (PO:0000003) that participates in the plant embryo stage (PO:0007631).
POC:curators
embrión (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物胚 (Japanese, exact)
NIG:Yukiko_Yamazaki
A multi-tissue plant structure (PO:0025496) that develops from a plant ovule (PO:0020003) and has as parts a plant embryo (PO:0009009) enclosed in a seed coat (PO:0009088).
diaspore (broad)
PO_GIT:405
semilla (Spanish, exact)
種子 (Japanese, exact)
pyrene (narrow)
plant_anatomy
PO:0009010
A seed generally develops from an ovule (PO:0020003) after fertilization, but may develop without fertilization in the case of apogamy (e.g., adventitious embryos or somatic embryos). A seed is a reproductive unit of seed plants (gymnosperms, angiosperms, and fossil pteridosperms).
seed
A multi-tissue plant structure (PO:0025496) that develops from a plant ovule (PO:0020003) and has as parts a plant embryo (PO:0009009) enclosed in a seed coat (PO:0009088).
POC:curators
semilla (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
種子 (Japanese, exact)
NIG:Yukiko_Yamazaki
pyrene (narrow)
FNA:f5c50e73-61e3-48ec-b918-6f85b3f40738
A plant anatomical entity (PO:0025131) that is, or was, part of a plant, or was derived from a part of a plant.
PO_GIT:57
estructura vegetal (Spanish, exact)
植物 構造 (Japanese, exact)
plant_anatomy
PO:0009011
'Part' includes both proper parts and the whole plant. CARO:0000003 'connected anatomical structure' is defined as: Material anatomical entity that is a single connected structure with inherent 3D shape, generated by coordinated expression of the organism's own genome.
plant structure
A plant anatomical entity (PO:0025131) that is, or was, part of a plant, or was derived from a part of a plant.
CARO:0000003
POC:curators
estructura vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物 構造 (Japanese, exact)
NIG:Yukiko_Yamazaki
'Part' includes both proper parts and the whole plant. CARO:0000003 'connected anatomical structure' is defined as: Material anatomical entity that is a single connected structure with inherent 3D shape, generated by coordinated expression of the organism's own genome.
PO:cooperl
A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes.
PO:0007021
PO_GIT:185
etapa de desarrollo de estructura vegetal (Spanish, exact)
plant growth and development stage (exact)
plant_structure_development_stage
Arabidopsis growth (related)
PO:0009012
Refers to GO:0032502 'developmental process', which includes growth, differentiation, and senescence, and BFO:0000003 'ocurrent'.
plant structure development stage
A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes.
BFO:0000003
GO:0032502
POC:curators
etapa de desarrollo de estructura vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
Arabidopsis growth (related)
TAIR:0000205
A portion of plant tissue (PO:0009007) in which plant cells (PO:0009002) have retained their embryonic characteristics, or have reverted to them secondarily, and that divide to produce new cells that can undergo differentiation to form mature tissues, i.e. they have a capacity for morphogenesis and growth.
PO_GIT:472
meristem (exact)
meristema (Spanish, exact)
meristematic tissue (exact)
分裂組織 (Japanese, exact)
plant_anatomy
PO:0009013
portion of meristem tissue
A portion of plant tissue (PO:0009007) in which plant cells (PO:0009002) have retained their embryonic characteristics, or have reverted to them secondarily, and that divide to produce new cells that can undergo differentiation to form mature tissues, i.e. they have a capacity for morphogenesis and growth.
APweb:Glossary
Gramene:Pankaj_Jaiswal
meristema (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
分裂組織 (Japanese, exact)
NIG:Yukiko_Yamazaki
A leaf-like organ on which one or more sporangia are borne.
esporofilo (Spanish, exact)
spore leaf (exact)
胞子葉 (Japanese, exact)
plant_anatomy
PO:0009026
sporophyll
A leaf-like organ on which one or more sporangia are borne.
APweb:Glossary
esporofilo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
spore leaf (exact)
FNA:301289d5-912b-4db3-af05-73579ecb9ef0
胞子葉 (Japanese, exact)
NIG:Yukiko_Yamazaki
A structure upon which (or in the axil of which) one or more megasporangia are borne; in flowering plants, a carpel.
megasporofilo (Spanish, exact)
大胞子葉 (Japanese, exact)
cone scale (narrow)
ovuliferous scale (narrow)
plant_anatomy
macrosporophyll (related)
PO:0009027
megasporophyll
A structure upon which (or in the axil of which) one or more megasporangia are borne; in flowering plants, a carpel.
APweb:Glossary
megasporofilo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
大胞子葉 (Japanese, exact)
NIG:Yukiko_Yamazaki
cone scale (narrow)
FNA:ae5076ce-3553-419a-af95-07c2062ad4e0
ovuliferous scale (narrow)
FNA:8e8e55b5-2c05-4089-b43c-3bcf5692c2a2
macrosporophyll (related)
FNA:c54df958-9c56-49e7-8ed8-64e36c9f42ed
A megasporophyll, almost always at the center of a flower, its margins more or less fused together or with other carpels to enclose the ovule(s).
PO:0006455
PO:0006470
pistil (broad)
PO_GIT:470
carpelo (Spanish, exact)
心皮 (Japanese, exact)
Poaceae carpel (narrow)
Zea carpel (narrow)
plant_anatomy
PO:0009030
In some cases, a gynoecium (PO:0009062) may consist of only one carpel, in which case annotations should go on carpel (PO:0009030). The word pistil is used synonymously with gynoecium, but if a gynoecium consists of a single carpel, then pistil may be used synonymously with carpel. If carpels are fused, the gynoecium is a syncarpous gynoecium, as in Poaceae, Brassicaceae and Solanaceae. If carpels are free, the gynoecium is an apocarpous gynoecium, as in Fabaceae. If you are annotating to this structure for Zea mays or other grasses, please also add an annotation to the corresponding floret type. Choose the most specific term possible from: spikelet floret (PO:0009082), ear floret (PO:0006354), upper floret of pedicellate spikelet of ear (PO:0006350), upper floret of sessile spikelet of ear (PO:0006352), tassel floret (PO:0006310), upper floret of pedicellate spikelet of tassel (PO:0006314), upper floret of sessile spikelet of tassel (PO:0006316).
carpel
A megasporophyll, almost always at the center of a flower, its margins more or less fused together or with other carpels to enclose the ovule(s).
APweb:Glossary
carpelo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
心皮 (Japanese, exact)
NIG:Yukiko_Yamazaki
A determinate reproductive shoot system (PO:0025082) that has as part at least one carpel (PO:0009030) or at least one stamen (PO:0009029) and does not contain any other determinate shoot system (PO:0009006) as a part.
PO:0004541
PO_GIT:160
PO_GIT:259
flor (Spanish, exact)
花 (Japanese, exact)
Asteraceae floret (narrow)
basal flower (narrow)
double flower (narrow)
hermaphrodite flower (narrow)
monoclinous flower (narrow)
perfect flower (narrow)
plant_anatomy
floret (related)
PO:0009046
The characteristic reproductive structure of angiosperms. May have as part one or more petals, sepals or tepals. May contain one or more pistillode (PO:0009078), staminode (PO:0009077) or other aborted organs that don't show up in mature form.
flower
A determinate reproductive shoot system (PO:0025082) that has as part at least one carpel (PO:0009030) or at least one stamen (PO:0009029) and does not contain any other determinate shoot system (PO:0009006) as a part.
POC:curators
flor (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
花 (Japanese, exact)
NIG:Yukiko_Yamazaki
basal flower (narrow)
CO_125:0000019
hermaphrodite flower (narrow)
CO_125:0000028
A shoot axis (PO:0025029) that is the primary axis of a plant.
PO_GIT:52
PO_GIT:96
caña (Spanish, exact)
culm (exact)
eje primario (Spanish, exact)
primary axis (exact)
primary stem (exact)
tallo (Spanish, exact)
tronco (Spanish, exact)
茎 (Japanese, exact)
bole (narrow)
cane (narrow)
caudex (narrow)
caudices (narrow)
core (narrow)
primocane (narrow)
scape (narrow)
stalk (narrow)
trunk (narrow)
plant_anatomy
PO:0009047
A stem often bears leaves and buds. It is usually above ground, and is more or less negatively geotropic.
stem
A shoot axis (PO:0025029) that is the primary axis of a plant.
POC:curators
caña (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
eje primario (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
primary stem (exact)
FNA:e3b142f6-37cf-4c1f-be07-b64a90feb131
tallo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
tronco (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
茎 (Japanese, exact)
NIG:Yukiko_Yamazaki
bole (narrow)
FNA:a5ba9e16-e0af-4430-a3a0-7aeb052fbffd
caudex (narrow)
FNA:cea24c10-d5ff-435f-aa40-db77dcbd27f0
caudices (narrow)
FNA:3c0e37e8-e363-4962-847e-5f9f2906d0f8
primocane (narrow)
FNA:58fb080c-dd6b-4172-b564-737091c72980
scape (narrow)
FNA:201dbd71-51cd-4138-8f61-3c3fdd55d02d
A reproductive shoot system (PO:0025082) that has as parts all of the shoot axes (PO:0025029) and flowers (PO:0009046; must have two or more) distal to the most distal leaf (PO:0009025).
PO:0009048
PO:0009050
PO:0020088
PO:0020111
PO:0020112
PO:0020113
PO:0020114
PO:0020115
PO:0020116
PO:0020117
PO:0020118
PO:0020119
PO:0020120
PO_GIT:260
PO_GIT:71
inflorescencia (Spanish, exact)
花序 (Japanese, exact)
Triticeae spike (narrow)
plant_anatomy
PO:0009049
An inflorescence is a reproductive shoot system from which at least two flowers develop. The growth pattern of an inflorescence may be monopodial (single main shoot axis), sympodial (growth only occurs from axillary meristems), or both. An inflorescence axis (PO:0020122) can be determinate or indeterminate. An inflorescence flower pedicel (PO:0009052) is the ultimate axis in an inflorescence. The flower (PO:0009046) of many plants, for example Magnolia spp., is solitary.
inflorescence
A reproductive shoot system (PO:0025082) that has as parts all of the shoot axes (PO:0025029) and flowers (PO:0009046; must have two or more) distal to the most distal leaf (PO:0009025).
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
POC:Laurel_Cooper
POC:Ramona_Walls
inflorescencia (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
花序 (Japanese, exact)
NIG:Yukiko_Yamazaki
A bract (PO:0009055) subtending a branch of the inflorescence (PO:0009049) or borne on the inflorescence axis (PO:0020122) below any branch (PO:0025073) or flower (PO:0009046).
pale (broad)
palea (broad)
paleae (broad)
paleas (broad)
palet (broad)
bráctea de la inflorescencia (Spanish, exact)
花序苞 (Japanese, exact)
inflorescence bract of ear (narrow)
spathe (narrow)
squamella (narrow)
squamellae (narrow)
squamule (narrow)
corn husk (related)
husk (related)
husk leaf (related)
inflorescence bract
A bract (PO:0009055) subtending a branch of the inflorescence (PO:0009049) or borne on the inflorescence axis (PO:0020122) below any branch (PO:0025073) or flower (PO:0009046).
APweb:Glossary
pale (broad)
FNA:3290efb9-fde1-4c56-a813-37e62e665af2
palea (broad)
FNA:3d210af5-1709-4aee-91e5-ccc65f5fa7bd
paleae (broad)
FNA:28b8e135-e4b9-4419-9f14-68d68bbc80c7
paleas (broad)
FNA:c7715818-04d2-4e9f-b63f-8741b6e558f4
palet (broad)
FNA:c7612a78-aff8-478d-9a6e-866dac52f101
bráctea de la inflorescencia (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
花序苞 (Japanese, exact)
NIG:Yukiko_Yamazaki
spathe (narrow)
FNA:be285d91-a6e6-4e1b-8d89-fa3252201928
squamella (narrow)
FNA:ead20a1b-057b-4008-9466-bdb8e283aa82
squamellae (narrow)
FNA:c5765385-917c-465e-83f8-b4fe5d693146
squamule (narrow)
FNA:f18da584-2b0b-4b03-a614-40140a1cb89e
A phyllome that subtends a reproductive structure.
bráctea (Spanish, exact)
苞葉 (Japanese, exact)
scale (narrow)
bracteole (related)
bractlet (related)
hypsophyll (related)
bract
A phyllome that subtends a reproductive structure.
POC:curators
bráctea (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
苞葉 (Japanese, exact)
NIG:Yukiko_Yamazaki
scale (narrow)
FNA:8c618dea-f3dd-434f-bb13-23273ea6c143
bracteole (related)
FNA:9cce93dc-f233-440e-9163-97207fca71a4
bractlet (related)
FNA:8968da77-e6b0-4302-baf9-1c8cb72a8b06
A collective phyllome structure (PO:0025023) composed all of the carpels (PO:0009030) in a flower (PO:0009046).
PO:0006317
PO:0006357
PO:0006365
PO:0006384
PO:0006391
PO:0006394
PO:0006403
PO:0006404
PO:0006423
PO:0006424
PO:0006425
PO:0006426
PO:0025089
pistil (broad)
PO_GIT:470
PO_GIT:71
PO_GIT:98
ginoecio (Spanish, exact)
gynaecium (exact)
gynoecia (exact, plural)
雌蕊群 (Japanese, exact)
Poaceae gynoecium (narrow)
Zea gynoecium (narrow)
apocarpous gynoecium (narrow)
gynoecium of ear floret (narrow)
gynoecium of lower floret of pedicellate spikelet of ear (narrow)
gynoecium of lower floret of pedicellate spikelet of tassel (narrow)
gynoecium of lower floret of sessile spikelet of ear (narrow)
gynoecium of lower floret of sessile spikelet of tassel (narrow)
gynoecium of tassel floret (narrow)
gynoecium of upper floret of pedicellate spikelet of ear (narrow)
gynoecium of upper floret of pedicellate spikelet of tassel (narrow)
gynoecium of upper floret of sessile spikelet of ear (narrow)
gynoecium of upper floret of sessile spikelet of tassel (narrow)
syncarpous gynoecium (narrow)
plant_anatomy
PO:0009062
If annotating gene expression to a gynoecium with a single carpel (PO:0009030), the annotation should go on carpel. A gynoecium with two or more carpels may be either syncarpous (carpels fused) or apopcarpous (carpels free) or the carpels may be partially fused. The word pistil is used synonymously with gynoecium for a synocarpous gynoecium, and synonymously with carpel for an apocarpous gynoecium, whether it has one or more carpels. In Zea mays, gynoecia of tassel florets and of the lower florets of ear spikelets usually do not develop fully, and they are present in a rudimentary state. If you are annotating to this structure for Zea mays or other grasses, please also add an annotation to the corresponding floret type. Choose the most specific term possible from: spikelet floret (PO:0009082), ear floret (PO:0006354), lower floret of pedicellate spikelet of ear (PO:0006353), lower floret of sessile spikelet of ear (PO:0006351), upper floret of pedicellate spikelet of ear (PO:0006350), upper floret of sessile spikelet of ear (PO:0006352), tassel floret (PO:0006310), lower floret of pedicellate spikelet of tassel (PO:0006313), lower floret of sessile spikelet of tassel (PO:0006315), upper floret of pedicellate spikelet of tassel (PO:0006314), upper floret of sessile spikelet of tassel (PO:0006316).
gynoecium
A collective phyllome structure (PO:0025023) composed all of the carpels (PO:0009030) in a flower (PO:0009046).
POC:curators
ginoecio (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
gynaecium (exact)
FNA:03f034c5-6bd6-4846-8ef7-c5190d09008c
gynoecia (exact, plural)
FNA:226a743c-7988-4b66-b163-2ce80d7c8a70
雌蕊群 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant organ (PO:0009008) that has as parts a nucellus (PO:0020020) in which a female gametophyte (PO:0025279) is located, one or two integuments (PO:0020021), and a funicle (PO:0020006).
PO:0006457
PO:0006491
PO_GIT:464
PO_GIT:70
óvulo vegetal (Spanish, exact)
胚珠 (Japanese, exact)
Poaceae ovule (narrow)
Zea ovule (narrow)
plant_anatomy
PO:0020003
A seed (PO:0009010) develops from a plant ovule. In angiosperms, a plant ovule is part of a plant ovary (PO:0009072). In conifers, a plant ovule is part of an ovuliferous scale (add term). If you are annotating to this structure for Zea mays or other grasses, please also add an annotation to the corresponding floret type. Choose the most specific term possible from: spikelet floret (PO:0009082), ear floret (PO:0006354), upper floret of pedicellate spikelet of ear (PO:0006350), upper floret of sessile spikelet of ear (PO:0006352).
plant ovule
A plant organ (PO:0009008) that has as parts a nucellus (PO:0020020) in which a female gametophyte (PO:0025279) is located, one or two integuments (PO:0020021), and a funicle (PO:0020006).
POC:curators
óvulo vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
胚珠 (Japanese, exact)
NIG:Yukiko_Yamazaki
A shoot axis (PO:0025029) that is part of an inflorescence (PO:0009049).
PO_GIT:260
PO_GIT:667
eje de la inflorescencia (Spanish, exact)
plant_anatomy
first order inflorescence branch (related)
inflorescence rachis (related)
花序軸 (Japanese, related)
PO:0020122
An inflorescence axis (PO:0020122) has either a determinate apex, which terminates in a flower meristem (PO:0000229), or has an indeterminate apex, which terminates in an inflorescence apical meristem (PO:0009108). An inflorescence pedicel (PO:0009052) is the simplest example of a determinate inflorescence axis.
inflorescence axis
A shoot axis (PO:0025029) that is part of an inflorescence (PO:0009049).
POC:curators
eje de la inflorescencia (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
花序軸 (Japanese, related)
NIG:Yukiko_Yamazaki
An inflorescence axis (PO:0020122) has either a determinate apex, which terminates in a flower meristem (PO:0000229), or has an indeterminate apex, which terminates in an inflorescence apical meristem (PO:0009108). An inflorescence pedicel (PO:0009052) is the simplest example of a determinate inflorescence axis.
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
POC:Laurel_Cooper
A pistillate inflorescence (PO:0025598) in Zea species that is highly compacted and bears the ear spikelets (PO:0006320) on a lateral inflorescence axis (PO:0020122).
PO_GIT:536
oreja de la inflorescencia (Spanish, exact)
雌穂(花) (Japanese, exact)
plant_anatomy
ear (related)
PO:0020136
ear inflorescence
A pistillate inflorescence (PO:0025598) in Zea species that is highly compacted and bears the ear spikelets (PO:0006320) on a lateral inflorescence axis (PO:0020122).
MaizeGDB_curator:Leszek_Vincent
POC:Laurel_Cooper
oreja de la inflorescencia (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
雌穂(花) (Japanese, exact)
NIG:Yukiko_Yamazaki
A shoot axis internode (PO:0005005) that is part of a stem (PO:0009047).
OBO-SF2_PO:146
internodo del tallo (Spanish, exact)
茎節間 (Japanese, exact)
plant_anatomy
PO:0020142
See node.
stem internode
A shoot axis internode (PO:0005005) that is part of a stem (PO:0009047).
POC:Laurel_Cooper
POC:curators
internodo del tallo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
茎節間 (Japanese, exact)
NIG:Yukiko_Yamazaki
A maximal portion of meristem tissue (PO:0009013) located at a shoot apex (PO:0000037) or root tip (PO:0000025).
promeristem (broad)
PO_GIT:579
AM (exact)
meristema apical (Spanish, exact)
頂端分裂組織 (Japanese, exact)
plant_anatomy
primary meristem (related)
PO:0020144
apical meristem
A maximal portion of meristem tissue (PO:0009013) located at a shoot apex (PO:0000037) or root tip (PO:0000025).
Gramene:Pankaj_Jaiswal
POC:Laurel_Cooper
POC:curators
meristema apical (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
頂端分裂組織 (Japanese, exact)
NIG:Yukiko_Yamazaki
A shoot system meristem (PO:0006079) formed at the apex of the shoot axis (PO:0025029), including those originating from an axillary bud meristem (PO:0000232).
promeristem (broad)
PO_GIT:472
SAM (exact)
meristema apical del epiblasto (epiblastema) (Spanish, exact)
茎頂分裂組織 (Japanese, exact)
plant_anatomy
primary shoot meristem (related)
PO:0020148
shoot apical meristem
A shoot system meristem (PO:0006079) formed at the apex of the shoot axis (PO:0025029), including those originating from an axillary bud meristem (PO:0000232).
POC:Laurel_Cooper
UMSL_curator:fz
meristema apical del epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
茎頂分裂組織 (Japanese, exact)
NIG:Yukiko_Yamazaki
A cardinal part of multi-tissue plant structure (PO:0025498) that is a proper part of a plant organ (PO:0009008) and includes portions of plant tissue (PO:0009007) of at least two different types.
rwalls
2010-02-11T01:18:24Z
PO_GIT:52
PO_GIT:60
cardinal part of plant organ (exact)
parte de un órgano cardinal (Spanish, exact)
基本的な(主要な)器官部 (Japanese, exact)
plant_anatomy
PO:0025001
Cardinal refers to the fact that these are biologically meaningful and not arbitrary parts. Examples include petiole (PO:0020038), lamina (PO:0025060), and leaflet (PO:0020049). See also collective organ part structure (PO:0025269), for plant structures composed of parts of multiple organs.
cardinal organ part
A cardinal part of multi-tissue plant structure (PO:0025498) that is a proper part of a plant organ (PO:0009008) and includes portions of plant tissue (PO:0009007) of at least two different types.
POC:curators
parte de un órgano cardinal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
基本的な(主要な)器官部 (Japanese, exact)
NIG:Yukiko_Yamazaki
An axial plant organ (PO:0009008).
rwalls
2010-07-01T03:44:41Z
eje de la planta (Spanish, exact)
plant axes (exact, plural)
植物軸(軸柱) (Japanese, exact)
plant_anatomy
PO:0025004
Includes roots and shoots.
plant axis
An axial plant organ (PO:0009008).
POC:curators
eje de la planta (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
plant axes (exact, plural)
FNA:2355281f-ab10-4ae2-a3d8-672cace068a8
植物軸(軸柱) (Japanese, exact)
NIG:Yukiko_Yamazaki
A collective plant structure (PO:0025497) that is a proper part of a whole plant (PO:0000003), and is composed of two or more adjacent plant organs (PO:0009008) and the associated portions of plant tissue (PO:0009007).
rwalls
2010-02-09T04:12:11Z
PO_GIT:63
estructura vegetal colectiva de órgano (Spanish, exact)
集合植物器官構造 (Japanese, exact)
plant_anatomy
PO:0025007
Organs can be of the same type or different types. Examples include flower (PO:0009046), perianth (PO:0009058), and inflorescence (PO:0009049). See also collective organ part structure (PO:0025269), for plant structures composed of parts of multiple organs, but no complete plant organs. This was formerly named collective plant structure.
collective plant organ structure
A collective plant structure (PO:0025497) that is a proper part of a whole plant (PO:0000003), and is composed of two or more adjacent plant organs (PO:0009008) and the associated portions of plant tissue (PO:0009007).
POC:curators
estructura vegetal colectiva de órgano (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
集合植物器官構造 (Japanese, exact)
NIG:Yukiko_Yamazaki
A collective plant organ structure (PO:0025007) that consists of two or more phyllomes (PO:0006001) originating from the same node or from one or more adjacent nodes with compressed shoot internodes (PO:0005005).
Laurel_Cooper
2010-04-28T11:04:34Z
PO:0008033
cycle (broad)
verticil (broad)
PO_GIT:90
PO_GIT:99
estructura colectiva del filoma (Spanish, exact)
葉的器官が集まった構造 (Japanese, exact)
floral whorl (narrow)
whorl (narrow)
plant_anatomy
phyllome whorl (related)
PO:0025023
collective phyllome structure
A collective plant organ structure (PO:0025007) that consists of two or more phyllomes (PO:0006001) originating from the same node or from one or more adjacent nodes with compressed shoot internodes (PO:0005005).
POC:curators
cycle (broad)
FNA:d42df0a9-60f4-4c24-9c0b-ba815272f2fe
verticil (broad)
FNA:12607624-3d2a-4113-bd86-0e2557f2f473
estructura colectiva del filoma (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
葉的器官が集まった構造 (Japanese, exact)
NIG:Yukiko_Yamazaki
floral whorl (narrow)
GO:0048438
GO:0048457
GO:0048458
GO:0048459
A collective plant organ structure (PO:0025007) that produces root meristems (PO:0006085), the plant structures (PO:0009011) that arise from them and the parts thereof.
rwalls
2010-07-01T02:11:26Z
root (broad)
PO_GIT:136
sistema de raíz (Spanish, exact)
根系 (Japanese, exact)
plant_anatomy
PO:0025025
Generally the below ground portion of a vascular plant.
root system
A collective plant organ structure (PO:0025007) that produces root meristems (PO:0006085), the plant structures (PO:0009011) that arise from them and the parts thereof.
POC:Laurel_Cooper
POC:curators
root (broad)
FNA:b7ce680b-c6ed-4d2e-81e6-66970f7deff9
sistema de raíz (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
根系 (Japanese, exact)
NIG:Yukiko_Yamazaki
A native plant cell (PO:0025606) that is part of a plant embryo (PO:0009009).
rwalls
2010-05-07T02:41:17Z
embryo cell (broad)
embryonic cell (broad)
PO_GIT:281
célula embriónica vegetal (Spanish, exact)
embryonic plant cell (exact)
胚性植物細胞 (Japanese, exact)
plant_anatomy
PO:0025028
embryo plant cell
A native plant cell (PO:0025606) that is part of a plant embryo (PO:0009009).
POC:Laurel_Cooper
POC:curators
célula embriónica vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
胚性植物細胞 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant axis (PO:0025004) that is part of a shoot system (PO:0009006).
rwalls
2010-07-01T03:46:35Z
caullome (exact)
eje del epiblasto (epiblastema) (Spanish, exact)
シュート軸 (Japanese, exact)
plant_anatomy
shoot (related)
PO:0025029
Often bears leaves and branches. In vascular plants, has at least one node and one internode.
shoot axis
A plant axis (PO:0025004) that is part of a shoot system (PO:0009006).
POC:curators
eje del epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
シュート軸 (Japanese, exact)
NIG:Yukiko_Yamazaki
A phyllome (PO:0006001) that is not associated with a reproductive structure.
rwalls
2010-07-12T01:31:44Z
PO_GIT:274
PO_GIT:301
hoja (Spanish, exact)
葉 (Japanese, exact)
plant_anatomy
PO:0025034
leaf
A phyllome (PO:0006001) that is not associated with a reproductive structure.
POC:curators
hoja (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
葉 (Japanese, exact)
NIG:Yukiko_Yamazaki
A cardinal organ part (PO:0025001) that is elongated and sub-cylindrical to cylindrical and supports another cardinal organ part.
tallo de alto orden (secundario, terciario, etc) (Spanish, exact)
柄 (Japanese, exact)
stipe (related)
stalk
A cardinal organ part (PO:0025001) that is elongated and sub-cylindrical to cylindrical and supports another cardinal organ part.
POC:curators
tallo de alto orden (secundario, terciario, etc) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
柄 (Japanese, exact)
NIG:Yukiko_Yamazaki
stipe (related)
FNA:21cee2f5-016a-44c6-b7a5-1fff6adc7e35
A shoot axis (PO:00025029) that develops from an axillary bud meristem (PO:0000232) or from equal divisions of a meristematic apical cell (PO:0030007).
rwalls
2010-07-01T04:21:46Z
PO_GIT:134
ramificación (Spanish, exact)
shoot axis branch (exact)
枝 (Japanese, exact)
branchlet (narrow)
higher order axis (narrow)
secondary axis (narrow)
tertiary axis (narrow)
twig (narrow)
plant_anatomy
PO:0025073
In vascular plants, branches arise from an axillary bud meristem (PO:0000232) and from divisions of the meristematic apical cell (PO:0030007) in non-vascular plants.
branch
A shoot axis (PO:00025029) that develops from an axillary bud meristem (PO:0000232) or from equal divisions of a meristematic apical cell (PO:0030007).
POC:curators
ramificación (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
shoot axis branch (exact)
POC:curators
枝 (Japanese, exact)
NIG:Yukiko_Yamazaki
branchlet (narrow)
FNA:32d32293-adee-47ae-b1ba-bd9bd22230c2
A shoot system (PO:0009006) in the sporophytic phase that has as part at least one sporangium (PO:0025094).
rwalls
2010-09-17T09:49:10Z
sistema de brote reproductivo (Spanish, exact)
生殖シュート 系、苗条系 (Japanese, exact)
plant_anatomy
PO:0025082
reproductive shoot system
A shoot system (PO:0009006) in the sporophytic phase that has as part at least one sporangium (PO:0025094).
POC:curators
sistema de brote reproductivo (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
生殖シュート 系、苗条系 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant structure (PO:0009011) that is part of an plant embryo (PO:0009009).
rwalls
2010-11-05T01:36:24Z
PO_GIT:245
PO_GIT:339
embryonic plant structure (exact)
estructura vegetal embriónica (Spanish, exact)
胚性植物構造 (Japanese, exact)
plant_anatomy
PO:0025099
Includes plant structures that only occur in embryos (such as suspensor) as well as plant structures that are part of an embryo when a plant is in the embryonic phase (such as embryonic radicle).
embryo plant structure
A plant structure (PO:0009011) that is part of an plant embryo (PO:0009009).
POC:curators
estructura vegetal embriónica (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
胚性植物構造 (Japanese, exact)
NIG:Yukiko_Yamazaki
A higher order infructescence axis (PO:0025243) which arises from a first order infructescence axis (PO:0025244) and develops from a second order inflorescence axis (PO:0006321).
rwalls
2011-01-05T09:16:29Z
PO_GIT:264
eje de segundo de la infructescencia (Spanish, exact)
primary infructescence branch (exact)
plant_anatomy
第一果序分枝 (Japanese, related)
PO:0025112
second order infructescence axis
A higher order infructescence axis (PO:0025243) which arises from a first order infructescence axis (PO:0025244) and develops from a second order inflorescence axis (PO:0006321).
NYBG:Brandon_Sinn
POC:Laura_Moore
POC:Ramona_Walls
eje de segundo de la infructescencia (Spanish, exact)
NYBG:Brandon_Sinn
POC:Maria_Alejandra_Gandolfo
第一果序分枝 (Japanese, related)
NIG:Yukiko_Yamazaki
A portion of meristem tissue (PO:0009013) that has as parts protoderm (PO:0006210) and sub-epidermal meristematic tissue and is committed to the development of a particular plant structure (PO:0009011).
rwalls
2010-11-15T09:10:22Z
PO_GIT:186
portion of primordial tissue (exact)
portion of primordium tissue (exact)
primordia (exact, plural)
primordio (Spanish, exact)
原基(可視的) (Japanese, exact)
plant_anatomy
PO:0025127
A primordium appears as a protrusion and is the first distinct form of a plant organ (PO:0009008), cardinal organ part (PO:0025001), or collective plant organ structure (PO:0025007). The transition from a primordium to the plant structure it develops into is marked by the development of non-meristematic cells, although meristematic cells may be present after the transition.
primordium
A portion of meristem tissue (PO:0009013) that has as parts protoderm (PO:0006210) and sub-epidermal meristematic tissue and is committed to the development of a particular plant structure (PO:0009011).
POC:curators
primordio (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
原基(可視的) (Japanese, exact)
NIG:Yukiko_Yamazaki
A primordium (PO:0025127) that develops from a phyllome anlagen (PO:0025430) and is part of a shoot apex (PO:0000037) and is committed to the development of a phyllome (PO:0006001).
rwalls
2010-11-15T09:27:11Z
PO_GIT:466
phyllome primordia (exact, plural)
portion of phyllome primordium tissue (exact)
primordio del filoma (Spanish, exact)
フィロム原基(可視的) (Japanese, exact)
plant_anatomy
PO:0025128
The transition from phyllome primordium to phyllome occurs when the first non-meristematic tissue develops begins to develop.
phyllome primordium
A primordium (PO:0025127) that develops from a phyllome anlagen (PO:0025430) and is part of a shoot apex (PO:0000037) and is committed to the development of a phyllome (PO:0006001).
PMID:11572953
POC:curators
primordio del filoma (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
フィロム原基(可視的) (Japanese, exact)
NIG:Yukiko_Yamazaki
An anatomical entity that is or was part of a plant.
rwalls
2010-11-15T11:41:38Z
PO_GIT:224
entidad anatómica vegetal (Spanish, exact)
植物 解剖学(形態)的実体 (Japanese, exact)
plant_anatomy
PO:0025131
Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'.
plant anatomical entity
cjm
An anatomical entity that is or was part of a plant.
BFO:0000004
CARO:0000000
POC:curators
entidad anatómica vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物 解剖学(形態)的実体 (Japanese, exact)
NIG:Yukiko_Yamazaki
Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'.
CAROC:Brownsville2014
A shoot apex that has as part a reproductive shoot apical meristem.
rwalls
2010-12-20T08:47:03Z
ápice reproductivo del epiblasto (epiblastema) (Spanish, exact)
生殖シュート頂、茎頂 (Japanese, exact)
plant_anatomy
PO:0025222
reproductive shoot apex
A shoot apex that has as part a reproductive shoot apical meristem.
POC:Ramona_Walls
ápice reproductivo del epiblasto (epiblastema) (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
生殖シュート頂、茎頂 (Japanese, exact)
NIG:Yukiko_Yamazaki
A portion of plant tissue (PO:0009007) that is part of a plant embryo (PO:0009009).
rwalls
2010-12-20T12:27:10Z
portion of embryo tissue (broad)
PO_GIT:338
portion of embryonic plant tissue (exact)
tejido embriónico vegetal (Spanish, exact)
植物胚性組織 の一部 (Japanese, exact)
plant_anatomy
PO:0025233
This class is for tissues that only occur as part of an embryo.
portion of embryo plant tissue
A portion of plant tissue (PO:0009007) that is part of a plant embryo (PO:0009009).
POC:curators
tejido embriónico vegetal (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物胚性組織 の一部 (Japanese, exact)
NIG:Yukiko_Yamazaki
A reproductive shoot system that is part of an infructescence and has as parts a second order infructescence axis and any infructescence axes and fruits that arise from it.
rwalls
2010-12-30T03:31:29Z
PO_GIT:261
hand of fruit (exact)
infructescencia de segundo orden (Spanish, exact)
secondary infructescence (exact)
第二果序 (Japanese, exact)
hand of bananas (narrow)
plant_anatomy
PO:0025241
second order infructescence
A reproductive shoot system that is part of an infructescence and has as parts a second order infructescence axis and any infructescence axes and fruits that arise from it.
POC:Ramona_Walls
hand of fruit (exact)
CO_125:.0000037
infructescencia de segundo orden (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
第二果序 (Japanese, exact)
NIG:Yukiko_Yamazaki
A shoot axis (PO:0025029) that is part of an infructescence (PO:0006342).
rwalls
2010-12-30T03:34:07Z
eje de la infructescencia (Spanish, exact)
果序軸 (Japanese, exact)
plant_anatomy
PO:0025242
infructescence axis
A shoot axis (PO:0025029) that is part of an infructescence (PO:0006342).
POC:Ramona_Walls
eje de la infructescencia (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
果序軸 (Japanese, exact)
NIG:Yukiko_Yamazaki
An infructescence axis (PO:0025242), which is a branch (PO:0025073) in an infructescence (PO:0006342), that develops from a higher order inflorescence axis (PO:0009081).
rwalls
2010-12-30T03:37:08Z
PO_GIT:264
PO_GIT:265
ejen de la infructescencia (Spanish, exact)
infructescence branch (exact)
plant_anatomy
果序枝 (Japanese, related)
PO:0025243
A higher order infructescence axis is named according to its position in an infructescence (PO:0006342). Tenth order infructescence axis (PO:0025112) is the greatest specific infructescence axis (PO:0025242) order in the PO; when mapping annotations to an infructescence axis which is of an order higher than ten, or when order is ambiguous or unknown, annotate directly to higher order infructescence axis (PO:0025243).
higher order infructescence axis
An infructescence axis (PO:0025242), which is a branch (PO:0025073) in an infructescence (PO:0006342), that develops from a higher order inflorescence axis (PO:0009081).
NYBG:Brandon_Sinn
POC:Ramona_Walls
ejen de la infructescencia (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
NYBG:Brandon_Sinn
果序枝 (Japanese, related)
NIG:Yukiko_Yamazaki
An infructescence axis (PO:0025242), which is the primary or main axis of an infructescence (PO:0006342), that develops from a first order inflorescence axis (PO:0025104).
rwalls
2010-12-30T03:38:25Z
eje de la infructescencia de primer orden (Spanish, exact)
infructescence rachis (exact)
第一果序軸 (Japanese, exact)
plant_anatomy
PO:0025244
first order infructescence axis
An infructescence axis (PO:0025242), which is the primary or main axis of an infructescence (PO:0006342), that develops from a first order inflorescence axis (PO:0025104).
NYBG:Brandon_Sinn
POC:Ramona_Walls
eje de la infructescencia de primer orden (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
第一果序軸 (Japanese, exact)
NIG:Yukiko_Yamazaki
A maximal whole plant development stage.
rwalls
2011-10-19T10:54:37Z
PO_GIT:230
vida de la planta entera (Spanish, exact)
植物体の一生 (Japanese, exact)
plant_structure_development_stage
PO:0025337
There are only two types of life of whole plant. Every life of a whole plant is either a maximal gametophyte stage or a maximal sporophyte stage.
life of whole plant stage
A maximal whole plant development stage.
POC:curators
vida de la planta entera (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
植物体の一生 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant structure development stage (PO:0009012) that has as primary participant a collective plant structure (PO:0025497).
rwalls
2011-10-19T11:12:49Z
PO_GIT:391
etapa de desarrollo de una estructura colectiva de la planta (Spanish, exact)
集合的植物構造の発生過程 (Japanese, exact)
plant_structure_development_stage
PO:0025338
Includes flower development stage (PO:0007615), corolla development stage (PO:0007604), and inflorescence development stage (PO:0001083).
collective plant organ structure development stage
A plant structure development stage (PO:0009012) that has as primary participant a collective plant structure (PO:0025497).
POC:curators
etapa de desarrollo de una estructura colectiva de la planta (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
集合的植物構造の発生過程 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant organ (PO:0009008) that is part of a flower (PO:0009046).
rwalls
2012-01-19T11:44:36Z
PO_GIT:423
órgano floral (Spanish, exact)
flower organ (exact)
花器官 (Japanese, exact)
plant_anatomy
PO:0025395
Includes phyllomes such as anthers and petals, as well as shoot axes such as androphores and gynophores.
floral organ
A plant organ (PO:0009008) that is part of a flower (PO:0009046).
POC:curators
órgano floral (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
花器官 (Japanese, exact)
NIG:Yukiko_Yamazaki
A portion of meristem tissue (PO:0009013) that is part of a peripheral zone (PO:0000225) of a shoot apical meristem (PO:0020148) and will give rise to a phyllome primordium (PO:0025128).
Laurel_Cooper
2012-02-07T08:20:10Z
phyllome meristem (broad)
PO_GIT:427
フィロム原基 (Japanese, exact)
plant_anatomy
PO:0025430
The phyllome anlagen is only detectable by gene expression, not morphology.
phyllome anlagen
A portion of meristem tissue (PO:0009013) that is part of a peripheral zone (PO:0000225) of a shoot apical meristem (PO:0020148) and will give rise to a phyllome primordium (PO:0025128).
POC:Laurel_Cooper
POC:curators
フィロム原基 (Japanese, exact)
NIG:Yukiko_Yamazaki
A portion of meristem tissue (PO:0009013) that is committed to the development of a root primordium (PO:0005029).
Laurel_Cooper
2012-02-08T01:00:56Z
PO_GIT:427
precursor de raí (Spanish, exact)
根原基 (Japanese, exact)
plant_anatomy
PO:0025433
Only detectable by gene expression, not morphology. May arise in a pericycle (PO:0006203), as for lateral roots in most seed plants, an endodermis (PO:0000252), as for lateral roots in ferns, or from parenchyma cells (PO:0000074) that are part a shoot axis (PO:0025029), in the case of a basal root (PO:0025002) or shoot-borne root (PO:0000042).
root anlagen
A portion of meristem tissue (PO:0009013) that is committed to the development of a root primordium (PO:0005029).
POC:curators
precursor de raí (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
根原基 (Japanese, exact)
NIG:Yukiko_Yamazaki
A root (PO:0009005) that develops from a tuberous root (PO:0025523) and is further radially enlarged for storage.
rwalls
2012-04-26T02:09:03Z
PO_GIT:47
raíz tubercular (Spanish, exact)
root tuber (exact)
storage root (exact)
塊茎根の塊茎(Japanese, exact)
plant_anatomy
tuber root (related)
PO:0025476
Functions in storage. This term should be used for tubers derived from roots (PO:0009005), as found in Cassava or sweet potato (Ipomoea batatas), not for tubers derived from branches (PO:0025073), as found in potatoes and yams. Use the term shoot axis tuber (PO:0004543), aerial tuber (PO:0004548), or subterranean tuber (PO:0004547) for tubers derived from branches. A tuberous root tuber may be distinguished from a tuber that is derived from a branch by the presence of a root cap (PO:0020123) early in development, or the presence of lateral roots (PO:0020121) or their remnants. Sometimes tuber roots bear vegetative buds (PO:0000058) like a tuber derived from a branch. A tuberous root tuber usually develops from a shoot-borne root (PO:0000042) or a lateral root (PO:0020121).
tuberous root tuber
A root (PO:0009005) that develops from a tuberous root (PO:0025523) and is further radially enlarged for storage.
POC:Laurel_Cooper
POC:curators
raíz tubercular (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
塊茎根の塊茎(Japanese, exact)
NIG:Yukiko_Yamazaki
A primordium (PO:0025127) that is committed to the development of a floral organ (PO:0025395) and is part of a reproductive shoot apex (PO:0025222).
rwalls
2012-04-26T03:57:09Z
PO_GIT:465
floral structure primordia (exact, plural)
portion of floral structure primordium tissue (exact)
primordio de organo floral (Spanish, exact)
花器官原基 (Japanese, exact)
plant_anatomy
PO:0025477
If annotating to a primordium of a floral structure, it is better to use the more specific term, such as petal primordium (PO:0000021) or anther primordium (PO:0006089).
floral organ primordium
A primordium (PO:0025127) that is committed to the development of a floral organ (PO:0025395) and is part of a reproductive shoot apex (PO:0025222).
POC:curators
primordio de organo floral (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
花器官原基 (Japanese, exact)
NIG:Yukiko_Yamazaki
A phyllome anlagen (PO:0025430) that will give rise to a bract primordium (PO:0025487) and is part of a peripheral zone (PO:000225) of a reproductive shoot apical meristem (PO:0008028).
anlagen de bráctea (Spanish, exact)
苞原基 (Japanese, exact)
bract anlagen
A phyllome anlagen (PO:0025430) that will give rise to a bract primordium (PO:0025487) and is part of a peripheral zone (PO:000225) of a reproductive shoot apical meristem (PO:0008028).
POC:Ramona_Walls
anlagen de bráctea (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
苞原基 (Japanese, exact)
NIG:Yukiko_Yamazaki
A phyllome primordium (PO:0025487) that is committed to the development of a flower bract (PO:0009055).
bract primordia (exact, plural)
portion of bract primordium tissue (exact)
primordio de la bráctea (Spanish, exact)
苞原基(可視的) (Japanese, exact)
bract primordium
A phyllome primordium (PO:0025487) that is committed to the development of a flower bract (PO:0009055).
POC:curators
primordio de la bráctea (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
苞原基(可視的) (Japanese, exact)
NIG:Yukiko_Yamazaki
A bract primordium (PO:0025128) is committed to the development of an inflorescence bract (PO:0009054).
inflorescence bract primordia (exact, plural)
primordio de la bráctea de la inflorescencia (Spanish, exact)
花序苞原基 (Japanese, exact)
portion of inflorescence bract primordium tissue (related)
inflorescence bract primordium
A bract primordium (PO:0025128) is committed to the development of an inflorescence bract (PO:0009054).
POC:Ramona_Walls
primordio de la bráctea de la inflorescencia (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
花序苞原基 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant structure (PO:0009011) that has as parts two or more portions of plant tissue (PO:0009007) of at least two different types and which through specific morphogenetic processes forms a single structural unit demarcated by primarily bona-fide boundaries from other structural units of different types.
Laurel_Cooper
2012-06-11T14:57:00Z
PO_GIT:480
estructura vegetal con múltiples tejidos (Spanish, exact)
複数の組織からなる植物構造 (Japanese, exact)
plant_anatomy
PO:0025496
Most multi-tissue plant structures have at least a small connection to other plant structures via a fiat boundary, such as where a leaf (PO:0025034) connects to a shoot axis (PO:0025029), a petal (PO:0009032) connects to a receptacle (PO:0009064), or a branch (PO:0025073) connects to a stem (PO:0009047). Refers to CARO:0000055 multi-tissue structure, def'n: Anatomical structure that has as parts two or more portions of tissue of at least two different types, and which through specific morphogenetic processes, form a single distinct structural unit demarcated by bona-fide boundries from other structural units of differnt types.
multi-tissue plant structure
A plant structure (PO:0009011) that has as parts two or more portions of plant tissue (PO:0009007) of at least two different types and which through specific morphogenetic processes forms a single structural unit demarcated by primarily bona-fide boundaries from other structural units of different types.
CARO:0000055
POC:curators
estructura vegetal con múltiples tejidos (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
複数の組織からなる植物構造 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant structure (PO:0009011) that is a proper part of a whole plant (PO:0000003) and includes two or more adjacent plant organs (PO:0009008) or adjacent cardinal organ parts (PO:0025001), along with any associated portions of plant tissue (PO:0009007).
Laurel_Cooper
2012-06-11T15:09:20Z
PO_GIT:479
estructura vegetal colectiva (Spanish, exact)
集合的植物構造 (Japanese, exact)
plant_anatomy
PO:0025497
This is a parent term to describe both collective organ part structure (PO:0025269) (e.g. septum), as well as collective plant organ structure (PO:0025007) (which was formerly named collective plant structure), for example shoot system (PO:0009006).
collective plant structure
A plant structure (PO:0009011) that is a proper part of a whole plant (PO:0000003) and includes two or more adjacent plant organs (PO:0009008) or adjacent cardinal organ parts (PO:0025001), along with any associated portions of plant tissue (PO:0009007).
POC:curators
estructura vegetal colectiva (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
集合的植物構造 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant structure (PO:0009011) that is a proper part of a multi-tissue plant structure (PO:0025496) and includes portions of plant tissues (PO:0009007) of at least two different types.
Laurel_Cooper
2012-06-11T15:28:44Z
PO_GIT:485
parte cardinal de estructura vegetal con múltiples tejidos (Spanish, exact)
複数の組織からなる植物構造の基本(主要)部分 (Japanese, exact)
plant_anatomy
PO:0025498
Includes cardinal parts of plant organs (PO:0025001) as well as parts of other multi-tissue plant structures. Cardinal refers to the fact that these are biologically meaningful and not arbitrary parts. Most cardinal parts of multi-tissue plant structures have both fiat and bona-fide boundaries, including parts with large fiat boundaries, such as leaf base (PO:0020040) or fruit distal end (PO:0008001), and parts with primarily bona-fide boundaries, such as leaflet (PO:0020049).
cardinal part of multi-tissue plant structure
A plant structure (PO:0009011) that is a proper part of a multi-tissue plant structure (PO:0025496) and includes portions of plant tissues (PO:0009007) of at least two different types.
POC:curators
parte cardinal de estructura vegetal con múltiples tejidos (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
複数の組織からなる植物構造の基本(主要)部分 (Japanese, exact)
NIG:Yukiko_Yamazaki
A plant axis (PO:0025004) that is radially enlarged.
Laurel_Cooper
2012-11-20T18:35:45Z
PO_GIT:127
塊茎 (Japanese, exact)
plant_anatomy
PO:0025522
Functions in storage of photosynthate metabolites. May develop from a branch (PO:0025073) or a root (PO:0009005). If you are annotating to tuber, you should pick the more specific child term: shoot axis tuber (PO:0004543) or tuberous root tuber (PO:0025476).
tuber
A plant axis (PO:0025004) that is radially enlarged.
POC:curators
塊茎 (Japanese, exact)
NIG:Yukiko_Yamazaki
A root (PO:0009005) that is radially enlarged relative to other lateral roots (PO:0020121) or shoot-borne roots (PO:0000042) on the same plant, but not as enlarged as a tuberous root tuber (PO:0025476).
Laurel_Cooper
2012-11-20T18:47:23Z
PO_GIT:47
raiz tuberosa (Spanish, exact)
塊茎根 (Japanese, exact)
plant_anatomy
PO:0025523
tuberous root
A root (PO:0009005) that is radially enlarged relative to other lateral roots (PO:0020121) or shoot-borne roots (PO:0000042) on the same plant, but not as enlarged as a tuberous root tuber (PO:0025476).
POC:curators
raiz tuberosa (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
塊茎根 (Japanese, exact)
NIG:Yukiko_Yamazaki
A collective plant organ structure development stage (PO:0025338) that begins with the onset of the plant organ development stage (PO:0025339) and ends with either gametophyte senescent stage (PO:0025343) or sporophyte senescent stage (PO:0007017) or death.
Laurel_Cooper
2012-12-13T18:21:19Z
PO_GIT:517
plant_structure_development_stage
PO:0025527
The shoot system (PO:0009006) develops fron the shoot apical meristem (PO:0020148) in the plant embryo (PO:0009009) in vascular plants. In lower plants the gametophore (PO:0030018) arises from a gametophore meristematic apical cell (PO:0030019) in the protonema (PO:0030003).
shoot system development stage
A collective plant organ structure development stage (PO:0025338) that begins with the onset of the plant organ development stage (PO:0025339) and ends with either gametophyte senescent stage (PO:0025343) or sporophyte senescent stage (PO:0007017) or death.
POC:Laurel_Cooper
A shoot system development stage (PO:0025527) that has as primary participant a bud (PO:0009006).
bud development stage
A shoot system development stage (PO:0025527) that has as primary participant a bud (PO:0009006).
POC:Laurel_Cooper
A shoot system development stage (PO:0025527) that has as primary participant a reproductive shoot system (PO:0025082).
Laurel_Cooper
2012-12-13T19:01:14Z
PO_GIT:517
plant_structure_development_stage
PO:0025530
reproductive shoot system development stage
A shoot system development stage (PO:0025527) that has as primary participant a reproductive shoot system (PO:0025082).
POC:Laurel_Cooper
An infructescence (PO:0006342) in Zea species that bears kernels (i.e. caryopsis fruit; PO:0030104) on a compact ear infructescence axis (PO:0025623) and develops from the ear inflorescence (PO:0020136).
Laurel_Cooper
2013-12-07T11:57:21Z
PO_GIT:580
plant_anatomy
PO:0025597
ear infructescence
An infructescence (PO:0006342) in Zea species that bears kernels (i.e. caryopsis fruit; PO:0030104) on a compact ear infructescence axis (PO:0025623) and develops from the ear inflorescence (PO:0020136).
POC:Laurel_Cooper
An inflorescence (PO:0009049) that includes as part only pistillate flowers (PO:0025599).
Laurel_Cooper
2013-12-13T11:16:53Z
PO_GIT:585
carpellate inflorescence (exact)
plant_anatomy
female inflorescence (related)
PO:0025598
pistillate inflorescence
An inflorescence (PO:0009049) that includes as part only pistillate flowers (PO:0025599).
POC:Laurel_Cooper
A flower (PO:0009046) that includes as part a single carpel (PO:0009030) or a gynoecium (PO:0009062), but the androecium (PO:0009061) is absent or has aborted during development.
Laurel_Cooper
2013-12-13T11:26:58Z
diclinous flower (broad)
imperfect flower (broad)
PO_GIT:585
carpellate flower (exact)
plant_anatomy
female flower (related)
PO:0025599
pistillate flower
A flower (PO:0009046) that includes as part a single carpel (PO:0009030) or a gynoecium (PO:0009062), but the androecium (PO:0009061) is absent or has aborted during development.
POC:Laurel_Cooper
female flower (related)
CO_125:0000050
A plant cell (PO:0009002) that is either part of a multicellular whole plant (PO:0000003) 'in vivo' or a unicellular organism 'in natura' (i.e. part of a natural environment).
Laurel_Cooper
2014-05-13T16:51:47Z
PO_GIT:586
plant_anatomy
PO:0025606
A native plant cell is one that is not grown or maintained in vitro, nor part of an in vitro plant structure (PO:0000004).
native plant cell
A plant cell (PO:0009002) that is either part of a multicellular whole plant (PO:0000003) 'in vivo' or a unicellular organism 'in natura' (i.e. part of a natural environment).
POC:Laurel_Cooper
A first order infructescence axis (PO:0025244) in an ear infructescence (PO:0025597) that bears kernels (i.e. caryopsis fruit; PO:0030104).
cooperl
2016-12-17T14:41:36Z
PO_GIT:655
cob (exact)
plant_anatomy
PO:0025623
ear infructescence axis
A first order infructescence axis (PO:0025244) in an ear infructescence (PO:0025597) that bears kernels (i.e. caryopsis fruit; PO:0030104).
POC:Laurel_Cooper
A whole plant development stage (PO:0007033) that has as primary participant a whole plant (PO:0000003) during the interval between fertilization (or apogamy) and death.
rwalls
2010-07-15T02:56:11Z
PO_GIT:139
PO_GIT:68
fase esporofítica (Spanish, exact)
sporophytic development stage (exact)
sporophytic phase (exact)
sporphyte phase (exact)
胞子体発生過程 (Japanese, exact)
plant_structure_development_stage
PO:0028002
A whole plant (PO:0000003) in the sporophyte development stage usually has twice the chromosome complement of a plant in the gametophytic phase, but may not in the case of apogamy. Examples of apogamy include both naturally occurring instances (such as sporophytes arising form haploid cells as in bryophytes or ferns) as well as in vitro instances (such as haploid embryo culture or in vitro fusion of non-gamete cells or protoplasts). During the sporophyte development stage, a plant may produce meiospores by meiosis.
sporophyte development stage
A whole plant development stage (PO:0007033) that has as primary participant a whole plant (PO:0000003) during the interval between fertilization (or apogamy) and death.
POC:curators
fase esporofítica (Spanish, exact)
POC:Maria_Alejandra_Gandolfo
胞子体発生過程 (Japanese, exact)
NIG:Yukiko_Yamazaki
A fruit (PO:0009001) which develops from a carpel (PO:0009030) and at maturity comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086) that dehisce along two fruit valves (PO:0000033).
dehiscent fruit (broad)
pod (broad)
PO_GIT:645
hülse (exact, German)
legumbre (exact, Spanish)
legume (exact)
plant_anatomy
PO:0030100
Legume fruit (PO:0030100) is characteristic of the plant family Fabaceae. Examples: pigeon pea (Cajanus cajan), chickpea (Cicer arietinum), peanut (Arachis hypogaea), soybean (Glycine max), and lentil (Lens culinaris subsp. culinaris).
legume fruit
A fruit (PO:0009001) which develops from a carpel (PO:0009030) and at maturity comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086) that dehisce along two fruit valves (PO:0000033).
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
POC:Laurel_Cooper
hülse (exact, German)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
legumbre (exact, Spanish)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
A fruit (PO:0009001) which develops from a gynoecium (PO:0009062) and at maturity comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086) that are fused to a seed coat (PO:0009088).
indehiscent fruit (broad)
PO_GIT:648
brown rice (exact)
cariopse (exact, Spanish)
cariópside (exact, Spanish)
caryopse (exact, German)
caryopsides (exact)
caryopsis (exact)
cereal (exact)
dehulled grain (exact)
dehulled kernel (exact)
grain (exact)
kernel (exact)
polished rice (exact)
plant_anatomy
PO:0030104
Caryopsis fruit (PO:0030104) is characteristic of the Poaceae (the grass family). Caryopsis fruits develop from a pseudomonomerous gyneocium (PO:0009062), and contain only a single seed due to the abortion of two of the three carpels (PO:0009030). The pericarp of caryopsis fruits of some bamboo species is somewhat fleshy at maturity and is fused to the seed coat; these fruits are referred to in the literature as bacoid caryopses. Examples: barley (Hordeum vulgare), rice (Oryza spp.), wheat (Triticum spp.), corn (Zea mays), sorghum (Sorghum bicolor), oat (Avena spp.), zebra grass (Miscanthus spp.), Tausch’s goatgrass (Aegilops tauschii), stiff brome (Brachypodium distachyon), cutgrass (Leersia perrieri), and foxtail millet (Setaria italica).
caryopsis fruit
A fruit (PO:0009001) which develops from a gynoecium (PO:0009062) and at maturity comprises a dry exocarp (PO:0009085), dry mesocarp (PO:0009087), and dry endocarp (PO:0009086) that are fused to a seed coat (PO:0009088).
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
POC:Laurel_Cooper
cariopse (exact, Spanish)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
cariópside (exact, Spanish)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
caryopse (exact, German)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
A fruit (PO:0009001) which at maturity comprises a fleshy endocarp (PO:0009086), fleshy mesocarp (PO:0009087), and fleshy exocarp (PO:0009085).
indehiscent fruit (broad)
PO_GIT:652
bacca (exact)
baya (exact, Spanish)
beere (exact, German)
berry (exact)
pyrine (narrow)
plant_anatomy
PO:0030108
Examples: pepper (Capsicum annuum), papaya (Carica papaya), avocado (Persea americana), may apple (Podophyllum peltatum), date palm (Phoenix dactylifera), tomato (Solanum lycopersicum), potato (Solanum tuberosum), chocolate (Theobroma cacao), blueberry (Vaccinium spp.), and grape (Vitis vinifera).
berry fruit
A fruit (PO:0009001) which at maturity comprises a fleshy endocarp (PO:0009086), fleshy mesocarp (PO:0009087), and fleshy exocarp (PO:0009085).
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
POC:Laurel_Cooper
baya (exact, Spanish)
Spanish
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
beere (exact, German)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
A berry fruit (PO:0030108) which develops from an inferior carpel (PO:0009030) and at maturity comprises a fleshy exocarp (PO:0009085), fleshy mesocarp (PO:0009087), and fleshy endocarp (PO:0009086), and has as a part a hard receptacle (PO:0009064) which surrounds, and is indistinct from, the exocarp (PO:0009085).
indehiscent fruit (broad)
panzerbeere (broad, German) (broad)
PO_GIT:652
kürbisfrucht (exact, German)
pepo (exact)
pepónide (exact, Spanish)
plant_anatomy
PO:0030111
A pepo fruit (PO:0030111) is specialized type of berry fruit (PO:0030108) which is encapsuled by persistent, accrescent receptacle (PO:0009064) tissue. The rind, or tough outer covering, of pepo fruits comprises receptical tissue and at least the exocarp (PO:0009085) layer of the pericarp (PO:0009084). Examples: pumpkin (Cucurbita pepo), cucumber (Cucumis sativus), and watermelon (Citrullus lanatus) and banana (Musa acuminata).
pepo fruit
A berry fruit (PO:0030108) which develops from an inferior carpel (PO:0009030) and at maturity comprises a fleshy exocarp (PO:0009085), fleshy mesocarp (PO:0009087), and fleshy endocarp (PO:0009086), and has as a part a hard receptacle (PO:0009064) which surrounds, and is indistinct from, the exocarp (PO:0009085).
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
POC:Laurel_Cooper
panzerbeere (broad, German) (broad)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
kürbisfrucht (exact, German)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
pepónide (exact, Spanish)
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
An inflorescence (PO:0009049) with a monopodial growth habit, which at flowering stage (PO:0007616), is composed of sessile flowers (PO:0009046) on an indeterminate, first order inflorescence axis (PO:0025104).
NYBG:Brandon_Sinn
2017-04-20T12:38:28Z
spike (exact)
stachyoid (narrow)
plant_anatomy
PO:0030117
The basal-most flowers of some spike inflorescences have short inflorescence flower pedicels (PO:0009052), such as in ladies'-tresses orchids (Spiranthes; Orchidaceae). Examples include black pepper (Piper nigrum; Piperaceae).
spike inflorescence
An inflorescence (PO:0009049) with a monopodial growth habit, which at flowering stage (PO:0007616), is composed of sessile flowers (PO:0009046) on an indeterminate, first order inflorescence axis (PO:0025104).
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
PO:cooperl
An inflorescence (PO:0009049) with a monopodial growth habit, which at flowering stage (PO:0007616) is composed of pedicellate flowers (PO:0009046) or spikelets (PO:0009051) on determinate inflorescence axes (PO:0020122).,
NYBG:Brandon_Sinn
2017-04-20T13:04:46Z
panicle (exact)
plant_anatomy
PO:0030123
Examples include the majority of species in the grass family Poaceae including oats (Avena spp.), brome (Brachypodium spp.), barley (Hordeum vulgare), cutgrass (Leersia perrieri), rice (Oryza spp.), foxgrass (Setaria spp.), wheat (Triticum aestivum), wild rice (Zizania palustris), and the staminate inflorescence of cultivated corn (Zea mays), as well as grapes (Vitis spp.; Vitaceae), and Polemonium caeruleum (Polemoniaceae). Panicle inflorescences are most often conical in shape.
panicle inflorescence
An inflorescence (PO:0009049) with a monopodial growth habit, which at flowering stage (PO:0007616) is composed of pedicellate flowers (PO:0009046) or spikelets (PO:0009051) on determinate inflorescence axes (PO:0020122).,
NYBG:Brandon_Sinn
NYBG:Dario_Cavaliere
PO:cooperl
A material entity consisting of multiple components that are causally integrated.
system
Average weight of the panicle from the plants or tillers in a given study.
PNWT (related)
panicle weight
Average weight of the panicle from the plants or tillers in a given study.
Gramene:pankaj_jaiswal
A plant trait (TO:0000387) which is a morphological quality of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575) contained therein.
plant architecture trait (related)
plant structure trait (related)
plant morphology trait
A plant trait (TO:0000387) which is a morphological quality of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575) contained therein.
GO:0005575
Gramene:pankaj_jaiswal
PO:0025131
TO:cooperl
A panicle morphology trait (TO:0000847) which is the measurement in centimeters from panicle base to tip.
PNLG (related)
PnL (related)
panicle length
A panicle morphology trait (TO:0000847) which is the measurement in centimeters from panicle base to tip.
IRRI:SES
A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025).
root morphology trait
A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025).
Gramene:pankaj_jaiswal
PO:0025025
TO:cooperl
A moisture content trait (TO:0000228) which is the amount of moisture of the caryopsis fruit (PO:0030104).
grain moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of the caryopsis fruit (PO:0030104).
TO:malaporte
A whole plant morphology trait (TO:0000398) which is a quality of a plant embryo (PO:0009009).
plant embryo morphology trait
A whole plant morphology trait (TO:0000398) which is a quality of a plant embryo (PO:0009009).
PO:0009009
TO:moorel
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a shoot system (PO:0009006).
shoot system morphology trait
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a shoot system (PO:0009006).
Gramene:pankaj_jaiswal
PO:0009006
TO:cooperl
The average dry weight of the root determined in a study.
RTDWT (related)
rdw (related)
rdw/t (related)
root dry weight per tiller (related)
total root dry weight (related)
root dry weight
The average dry weight of the root determined in a study.
Gramene:jcl
Gramene:pankaj_jaiswal
A root system morphology trait (TO:0000985) which is the number of roots (PO:0009005) in a root system (PO:0025025).
RTNB (related)
tnr (related)
root number
A root system morphology trait (TO:0000985) which is the number of roots (PO:0009005) in a root system (PO:0025025).
Gramene:jcl
Gramene:pankaj_jaiswal
PATO:0001555
TO:cooperl
TO_GIT:357
Proportion of usable (economically significant) biomass over total (biological) biomass, expressed as a percentage.
HI (related)
HVID (related)
harvest index
Proportion of usable (economically significant) biomass over total (biological) biomass, expressed as a percentage.
Gramene:jcl
Gramene:pankaj_jaiswal
A leaf morphology trait (TO:0000748) which is the length of a leaf (PO:0025034).
LFLG (related)
LL (related)
lfln (related)
leaf length
A leaf morphology trait (TO:0000748) which is the length of a leaf (PO:0025034).
IRRI:SES
PO:0025034
TO:cooperl
TO:moorel
lfln (related)
MaizeGDB_QTL:61715
Relative yield was calculated as the ratio of biomass in stress to that of control.
RB (related)
RELBIOM (related)
relative biomass yield (related)
relative biomass
Relative yield was calculated as the ratio of biomass in stress to that of control.
Gramene:jcl
Gramene:pankaj_jaiswal
A grain yield trait (TO:0000396) which is the proportion of kernels remaining after milling to remove the bran.
MR (related)
milled rice ratio (related)
milled rice yield
A grain yield trait (TO:0000396) which is the proportion of kernels remaining after milling to remove the bran.
https://ricecap.hosted.uark.edu/glossary_ricecaplist.htm#M
A shoot axis internode morphology trait (TO:0000755) which is the length of a shoot axis internode (PO:0005005).
INLG (related)
shoot axis internode length
A shoot axis internode morphology trait (TO:0000755) which is the length of a shoot axis internode (PO:0005005).
Gramene:pankaj_jaiswal
A seed morphology trait (TO:0000184) which is the length of a seed (PO:0009010).
SDLG (related)
seed length
A seed morphology trait (TO:0000184) which is the length of a seed (PO:0009010).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009010
TO:moorel
A seed morphology trait (TO:0000184) which is the width of a seed (PO:0009010).
SDWD (related)
plump seed (related)
seed width
A seed morphology trait (TO:0000184) which is the width of a seed (PO:0009010).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009010
TO:moorel
A panicle morphology trait (TO:0000847) which is the average number of panicles per plant in a study.
NOP (related)
NP (related)
PN (related)
PNNB (related)
TP (related)
number of effective tiller per plant (related)
number of panicle (related)
panicle number per plant (related)
panicle number per tiller (related)
seed setting tillers per plant (related)
spike number (related)
panicle number
A panicle morphology trait (TO:0000847) which is the average number of panicles per plant in a study.
Gramene:pankaj_jaiswal
TO:moorel
Relative yield is calculated as a ratio of yield in stress to that of control.
RELYLD (related)
RY (related)
relative yield
Relative yield is calculated as a ratio of yield in stress to that of control.
Gramene:jcl
Gramene:pankaj_jaiswal
A fruit quality trait (TO:0002728) that is the commercial and /or economical value of the grain (i.e. fruit (PO:0009001)), or its overall improvement.
grain quality trait
A fruit quality trait (TO:0002728) that is the commercial and /or economical value of the grain (i.e. fruit (PO:0009001)), or its overall improvement.
Gramene:pankaj_jaiswal
TO:cooperl
A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010).
SDWT (exact)
seed weight
A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009010
TO:moorel
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a seed (PO:0009010).
seed morphology trait
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009010
TO:moorel
A whole plant morphology trait (TO:0000398) which is the height of a whole plant (PO:0000003).
Ht (related)
PTHT (related)
shoot height (related)
plant height
A whole plant morphology trait (TO:0000398) which is the height of a whole plant (PO:0000003).
IRRI:SES
PO:0000003
TO:cooperl
A grain yield trait (TO:0000396) which is the amount of whole (3/4 of original length or longer) milled kernels separated from the total amount of milled rice.
HEADR (related)
head milled rice (related)
head rice ratio (related)
head rice yield
A grain yield trait (TO:0000396) which is the amount of whole (3/4 of original length or longer) milled kernels separated from the total amount of milled rice.
TO:cooperl
https://ricecap.hosted.uark.edu/glossary_ricecaplist.htm#H
A carpel morphology trait (TO:0006012) which is a quality of a pistil.
pistil related trait (related)
pistil morphology trait
A carpel morphology trait (TO:0006012) which is a quality of a pistil.
Gramene:pankaj_jaiswal
TO:moorel
A root morphology trait (TO:0000043) which is the length of a root (PO:0009005).
MRD (related)
MRL (related)
RTLG (related)
maximum root depth (related)
maximum root length (related)
root length
A root morphology trait (TO:0000043) which is the length of a root (PO:0009005).
GR:pj
Gramene:jcl
TO:austin_meier
TO:cooperl
A plant quality trait (TO:0000597) which is the amount of moisture in a plant structure (PO:0009011).
moisture content trait
A plant quality trait (TO:0000597) which is the amount of moisture in a plant structure (PO:0009011).
TO:cooperl
A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant.
LFNB (related)
leaf number
A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant.
Gramene:pankaj_jaiswal
TO:cooperl
A grain weight (TO:0000919) which is the weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
100-grain weight (exact)
HGRWT (exact)
hundred grain weight (exact)
HSDWT (related)
hundred seed weight (related)
100-grain weight
A grain weight (TO:0000919) which is the weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
IRRI:SES
TO:cooperl
An inflorescence morphology trait (TO:0000373) trait which is the length of an inflorescence (PO:0009049).
inflorescence length
An inflorescence morphology trait (TO:0000373) trait which is the length of an inflorescence (PO:0009049).
TO:cooperl
A plant trait (TO:0000387) which is a quality of a chemical entity (CHEBI:24431), a plant metabolite (CHEBI:76924), or a molecular function (GO:0003674), which occurs in a cellular component (GO:0005575), plant anatomical entity (PO:0025131) or during a plant structure development stage (PO:0009012).
biochemical trait
A plant trait (TO:0000387) which is a quality of a chemical entity (CHEBI:24431), a plant metabolite (CHEBI:76924), or a molecular function (GO:0003674), which occurs in a cellular component (GO:0005575), plant anatomical entity (PO:0025131) or during a plant structure development stage (PO:0009012).
Gramene:pankaj_jaiswal
TO:cooperl
The ratio determined from the parameters evaluated for root length and the shoot length in a study.
RTSHRO (exact)
r/s ratio (exact)
root length to shoot length ratio (exact)
root/shoot ratio (exact)
root to shoot ratio
The ratio determined from the parameters evaluated for root length and the shoot length in a study.
Gramene:pankaj_jaiswal
A root morphology trait (TO:0000043) which is the weight of a root (PO:0009005).
RTWT (related)
TRW (related)
total root weight (related)
root weight
A root morphology trait (TO:0000043) which is the weight of a root (PO:0009005).
Gramene:pankaj_jaiswal
The trait associated with an assay to determine the affected metabolite's profile.
metabolite content trait
The trait associated with an assay to determine the affected metabolite's profile.
Gramene:pankaj_jaiswal
A yield trait (TO: 0000371) that is the amount of a plant structure (PO:0009011) or portion of plant substance (PO:0025161) produced by the shoot system (PO:0009006) which is harvested.
BIOMYLD (related)
BY (related)
shoot system yield trait
A yield trait (TO: 0000371) that is the amount of a plant structure (PO:0009011) or portion of plant substance (PO:0025161) produced by the shoot system (PO:0009006) which is harvested.
ISBN:0198506732
TO:cooperl
The dry weight of the whole plant.
DMASS (related)
PTDWT (related)
RTWT (related)
dry mass (related)
total dry mass (related)
plant dry weight
The dry weight of the whole plant.
Gramene:pankaj_jaiswal37
A shoot axis morphology trait (TO:0000739) which is the quality of a stem (PO:0009047).
core morphology trait (narrow)
stem morphology trait
A shoot axis morphology trait (TO:0000739) which is the quality of a stem (PO:0009047).
Gramene:pankaj_jaiswal
PO:0009047
TO:moorel
A leaf morphology trait (TO:0000748) which is the width of a leaf (PO:0025034).
LFWD (related)
LW (related)
lfwid (related)
leaf width
A leaf morphology trait (TO:0000748) which is the width of a leaf (PO:0025034).
IRRI:SES
PO:0025034
TO:cooperl
TO:moorel
lfwid (related)
MaizeGDB_QTL:61714
A plant trait (TO:0000387) which is a harvestable product that is a plant anatomical entity (PO:0025131) or one or more constituent cellular components (GO:0005575) contained therein.
YLD (related)
yield trait
A plant trait (TO:0000387) which is a harvestable product that is a plant anatomical entity (PO:0025131) or one or more constituent cellular components (GO:0005575) contained therein.
Gramene:pankaj_jaiswal
TO:cooperl
A reproductive shoot system morphology trait (TO:0000786) that is a quality of an inflorescence (PO:0009049).
Head morphology trait (narrow)
inflorescence structure trait (related)
inflorescence morphology trait
A reproductive shoot system morphology trait (TO:0000786) that is a quality of an inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
A grain weight (TO:0000919) which is the weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
1000-grain weight (exact)
TGRWT (exact)
thousand grain weight (exact)
TSDWT (related)
thousand seed weight (related)
1000-grain weight
A grain weight (TO:0000919) which is the weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
A measurable or observable characteristic of a cellular component (GO:0005575), biological process (GO:0008150) or molecular function (GO:0003674) that is part of, or has participant a plant anatomical entity (PO:0025131) and/or a plant structure development stage (PO:0009012).
plant phenotype (related)
plant quality (related)
plant trait
A measurable or observable characteristic of a cellular component (GO:0005575), biological process (GO:0008150) or molecular function (GO:0003674) that is part of, or has participant a plant anatomical entity (PO:0025131) and/or a plant structure development stage (PO:0009012).
GO:0003674
GO:0005575
GO:0008150
Gramene:pankaj_jaiswal
PO:0009012
PO:0025131
TO:cooperl
Yield of forage matter upon harvest.
FRGYLD (related)
FY (related)
straw yield (related)
forage yield
Yield of forage matter upon harvest.
Gramene:pankaj_jaiswal
A seed morphology trait (TO:0000184) which is the size of a seed (PO:0009010).
seed size
A seed morphology trait (TO:0000184) which is the size of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009010
TO:cooperl
A fruit yield trait (TO:0000871) that is the amount of grain.
GRYLD (related)
Yld (related)
grain yield trait
A fruit yield trait (TO:0000871) that is the amount of grain.
IRRI:SES
TO:contributors
TO:cooperl
A caryopsis fruit morphology trait (TO:0001079) which is the size of the grain (caryopsis fruit; PO:0030104).
GRSZ (exact)
grain size
A caryopsis fruit morphology trait (TO:0001079) which is the size of the grain (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
PO:0009084
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a whole plant (PO:0000003).
whole plant morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a whole plant (PO:0000003).
PO:0000003
TO:cooperl
An ear infructescence morphology trait (TO:0000976) that is the length of an ear infructescence (PO:0025597) from base to tip.
ear infructescence length (exact)
EARLG (related)
earln (related)
ear length
An ear infructescence morphology trait (TO:0000976) that is the length of an ear infructescence (PO:0025597) from base to tip.
TO:cooperl
earln (related)
MaizeGDB_QTL:78112
Fresh weight of the plant.
PLFWT (related)
plant fresh weight
Fresh weight of the plant.
Gramene:pankaj_jaiswal37
An infructescence yield trait (TO:0000936) that is the number of ears (ear infructescence; PO:0025597) on a plant or the average number present in population.
EARNB (related)
ENO (related)
ENP (related)
ear number per plant (related)
ears per 10 plants (related)
ears per plant (related)
ear infructescence number
An infructescence yield trait (TO:0000936) that is the number of ears (ear infructescence; PO:0025597) on a plant or the average number present in population.
Gramene:pankaj_jaiswal
TO:cooperl
A fruit morphology trait (TO:0002629) which is the number of seeds (PO:0009010) in a fruit (PO:0009001).
SDNB (related)
fruit seed number
A fruit morphology trait (TO:0002629) which is the number of seeds (PO:0009010) in a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
PO:0009010
Average weight of dehulled grains per plant.
GRYLDPPL (related)
grain yield per plant
Average weight of dehulled grains per plant.
Gramene:pankaj_jaiswal
Average weight of dehulled grains per panicle.
GRYLDPPN (exact)
grain yield per panicle
Average weight of dehulled grains per panicle.
Gramene:pankaj_jaiswal
A ratio of number of tiller bearing the panicles to the total number of tillers in rice.
PNTIRO (related)
panicle tiller ratio (related)
productive tiller percent (related)
panicle to tiller ratio
A ratio of number of tiller bearing the panicles to the total number of tillers in rice.
Gramene:pankaj_jaiswal
TBIOMYLD (related)
dry matter yield (related)
total dry weight (related)
total biomass yield
A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131).
mineral and ion content trait
A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131).
Gramene:pankaj_jaiswal
Amount of carbon present in the dry mass.
CBCN (related)
carbon content
Amount of carbon present in the dry mass.
Gramene:pankaj_jaiswal
A leaf morphology trait (TO:0000748) which is the composition of a leaf (PO:0025034).
leaf composition trait
A leaf morphology trait (TO:0000748) which is the composition of a leaf (PO:0025034).
PO:0025034
TO:moorel
pigment content trait
A pigment content trait (TO:0000494) which is a measure of the chlorophyll a and/or chlorophyll b content in a plant structure (PO:0009011).
CHLCN (related)
chlorophyll content
A pigment content trait (TO:0000494) which is a measure of the chlorophyll a and/or chlorophyll b content in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
A reproductive shoot system morphology trait (TO:0000786) which is a quality of a flower (PO:0009046).
flower morphology trait
A reproductive shoot system morphology trait (TO:0000786) which is a quality of a flower (PO:0009046).
Gramene:pankaj_jaiswal
PO:0009046
TO:cooperl
A leaf morphology trait (TO:0000505) which is the weight of a leaf (PO:0025034).
LFWT (related)
leaf weight
A leaf morphology trait (TO:0000505) which is the weight of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
TO:cooperl
TO:moorel
A leaf morphology trait (TO:0000748) which is the total area of a leaf (PO:0025034).
LFAR (related)
leaf area trait
A leaf morphology trait (TO:0000748) which is the total area of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:cooperl
A leaf morphology trait (TO:0000748) which is the ratio of leaf length (TO:0000135) to leaf width (TO:0000370).
LFLGWDRO (related)
leaf length to width ratio
A leaf morphology trait (TO:0000748) which is the ratio of leaf length (TO:0000135) to leaf width (TO:0000370).
Gramene:pankaj_jaiswal
TO:cooperl
A leaf composition trait (TO:0000493) which is the amount of nitrogen (CHEBI:51143) in the leaf (PO:0025034).
LFNICN (related)
leaf nitrogen content
A leaf composition trait (TO:0000493) which is the amount of nitrogen (CHEBI:51143) in the leaf (PO:0025034).
CHEBI:51143
A shoot system morphology trait (TO:0000077) which is the number of rhizomes present in a shoot system (PO:0009006).
RHZNB (related)
rhizome number per plant (related)
rhizome number
A shoot system morphology trait (TO:0000077) which is the number of rhizomes present in a shoot system (PO:0009006).
Gramene:pankaj_jaiswal
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of a rhizome (PO:0004542).
rhizome morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of a rhizome (PO:0004542).
Gramene:pankaj_jaiswal
TO:cooperl
The dry weight of the shoot without inflorescence.
SHDWT (related)
total shoot dry weight (related)
shoot dry weight
The dry weight of the shoot without inflorescence.
Gramene:pankaj_jaiswal37
A rhizome morphology trait (TO:0000549) which is the length of a rhizome (PO:0004542).
RHZLG (related)
average rhizome length (related)
rhizome length
A rhizome morphology trait (TO:0000549) which is the length of a rhizome (PO:0004542).
Gramene:pankaj_jaiswal
TO:cooperl
A rhizome morphology trait (TO:0000549) which is the dry weight of a rhizome (PO:0004542).
RHZDWT (related)
rhizome dry weight per plant (related)
rhizome dry weight
A rhizome morphology trait (TO:0000549) which is the dry weight of a rhizome (PO:0004542).
TO:cooperl
Weight of the shoot without inflorescence.
SHWT (related)
total shoot weight (related)
shoot axis weight
Weight of the shoot without inflorescence.
Gramene:pankaj_jaiswal37
Fresh weight of the shoot without inflorescence.
SHFWT (related)
total shoot fresh weight (related)
shoot fresh weight
Fresh weight of the shoot without inflorescence.
Gramene:pankaj_jaiswal37
A stem morphology trait (TO:0000361) which is the length of the stem (PO:0009047).
core length (narrow)
CULMLG (related)
CmL (related)
STEMLG (related)
culm height (related)
culm length (related)
stem height (related)
stem length
A stem morphology trait (TO:0000361) which is the length of the stem (PO:0009047).
Gramene:pankaj_jaiswal37
PO:0009047
TO:moorel
The average fresh weight of the root determined in a study.
RTFWT (related)
total root fresh weight (related)
root fresh weight
The average fresh weight of the root determined in a study.
Gramene:pankaj_jaiswal37
A reproductive shoot system morphology trait (TO:0000786) which is the number of inflorescences (PO:0009049).
INFLONB (related)
inflorescence number
A reproductive shoot system morphology trait (TO:0000786) which is the number of inflorescences (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:cooperl
TO:moorel
An infructescence morphology trait (TO:0000920) that is the average weight (mass) of an infructescence bearing mature fruit (PO:0009001).
infructescence weight
An infructescence morphology trait (TO:0000920) that is the average weight (mass) of an infructescence bearing mature fruit (PO:0009001).
Gramene:pankaj_jaiswal
TO:cooperl
A grain weight (TO:0000919) which is the average weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
average grain weight
A grain weight (TO:0000919) which is the average weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
TO:cooperl
A plant trait (TO:0000387) that contributes to the overall utility, nutritional, or economic value of a plant, plant structure (PO:0009011) or plant product
plant quality trait
A plant trait (TO:0000387) that contributes to the overall utility, nutritional, or economic value of a plant, plant structure (PO:0009011) or plant product
Gramene:pankaj_jaiswal
ISBN:9781118313718
TO:cooperl
A biochemical trait which is a quality of an enzymatic reaction.
enzymatic activity (related)
enzyme catalytic activity (related)
enzyme activity trait
A biochemical trait which is a quality of an enzymatic reaction.
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the potassium cation (CHEBI:29103) composition in a plant structure (PO:0009011).
potassium content
A mineral and ion content trait (TO:0000465) which is the potassium cation (CHEBI:29103) composition in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
RELTDWT (related)
relative total dry weight
An inflorescence width (TO:0000804) trait which is the width of a spike inflorescence (PO:0030117).
SPIKEWD (related)
spike width
An inflorescence width (TO:0000804) trait which is the width of a spike inflorescence (PO:0030117).
TO:cooperl
BRWRYLD (related)
brown rice yield
They are non-nutritive plant chemicals that have protective or disease preventive properties.
phytochemical compound content
They are non-nutritive plant chemicals that have protective or disease preventive properties.
Gramene:pankaj_jaiswal
An inflorescence morphology trait (TO:0000373) which is the height of an inflorescence (PO:0009049) measured from ground to the attachment point.
INFLOHT (related)
inflorescence height
An inflorescence morphology trait (TO:0000373) which is the height of an inflorescence (PO:0009049) measured from ground to the attachment point.
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
An infructescence morphology trait (TO:0000920) which is the number of rows of kernels per ear infructescence (PO:0025597).
KERROWNB (related)
kernel row number per ear (related)
kernel row number per ear
An infructescence morphology trait (TO:0000920) which is the number of rows of kernels per ear infructescence (PO:0025597).
TO:cooperl
A infructescence yield trait (TO:0000936) which is the length of a kernel row from base to where kernels end on the ear infructescence (PO:0025597).
KERROWLG (related)
kernel set length (related)
kernel row length
A infructescence yield trait (TO:0000936) which is the length of a kernel row from base to where kernels end on the ear infructescence (PO:0025597).
TO:cooperl
A yield trait (TO:0000371) which is the yield of starch from a plant structure (PO:0009011).
STARCHYLD (related)
starch yield
A yield trait (TO:0000371) which is the yield of starch from a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
A caryopsis fruit morphology trait (TO:0001079) which is the length of a grain (caryopsis fruit; PO:0030104).
GRLG (exact)
DHULGRLG (related)
KERLG (related)
kernel length (related)
length of dehulled grain (related)
length of grain without hull (related)
grain length
A caryopsis fruit morphology trait (TO:0001079) which is the length of a grain (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
TO:moorel
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant organ (PO:0009008).
plant organ morphology trait
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant organ (PO:0009008).
PO:0009008
TO:cooperl
A plant organ morphology trait (TO:0000736) which is a quality of a plant axis (PO:0025004).
plant axis morphology trait
A plant organ morphology trait (TO:0000736) which is a quality of a plant axis (PO:0025004).
PO:0025004
TO:cooperl
A plant axis morphology trait (TO:0000738) which is a quality of a shoot axis (PO:0025029).
shoot axis morphology trait
A plant axis morphology trait (TO:0000738) which is a quality of a shoot axis (PO:0025029).
PO:0025029
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of a branch (PO:0025073).
branch morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of a branch (PO:0025073).
PO:0025073
TO:cooperl
A plant axis morphology trait (TO:0000738) which is quality of a tuber (PO:0004543).
tuber morphology trait
A plant axis morphology trait (TO:0000738) which is quality of a tuber (PO:0004543).
PO:0004543
TO:cooperl
A tuber morphology trait (TO:0000741) which is a quality of a subterranean shoot axis tuber (PO:0004547).
subterranean shoot axis tuber morphology trait
A tuber morphology trait (TO:0000741) which is a quality of a subterranean shoot axis tuber (PO:0004547).
PO:0004547
TO:cooperl
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the size of a subterranean shoot axis tuber (PO:0004547).
tuber size (broad)
subterranean shoot axis tuber size
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the size of a subterranean shoot axis tuber (PO:0004547).
PO:0004547
TO:cooperl
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the mass of a subterranean shoot axis tuber (PO:0004547).
tuber mass (broad)
tuber weight (exact)
subterranean shoot axis tuber mass
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the mass of a subterranean shoot axis tuber (PO:0004547).
PO:0004547
TO:cooperl
A plant organ morphology trait (TO:0000736) which is quality of a phyllome (PO:0006001).
phyllome morphology trait
A plant organ morphology trait (TO:0000736) which is quality of a phyllome (PO:0006001).
PO:0006001
TO:cooperl
A phyllome morphology trait (TO:0000747) which is quality of a leaf (PO:0025034).
leaf morphology trait
A phyllome morphology trait (TO:0000747) which is quality of a leaf (PO:0025034).
PO:0025034
TO:cooperl
A cardinal organ part of a multi-tissue plant structure morphology trait (TO:0000837) which is a quality of a cardinal organ part (PO:0025001).
cardinal organ part morphology trait
A cardinal organ part of a multi-tissue plant structure morphology trait (TO:0000837) which is a quality of a cardinal organ part (PO:0025001).
PO:0025001
TO:cooperl
TO:moorel
A cardinal organ part morphology trait (TO:0000754) which is a quality of a shoot axis internode (PO:0005005).
shoot axis internode morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of a shoot axis internode (PO:0005005).
PO:0005005
TO:cooperl
A shoot axis internode morphology trait (TO:0000755) which is a quality of a stem internode (PO:0020142).
stem internode morphology trait
A shoot axis internode morphology trait (TO:0000755) which is a quality of a stem internode (PO:0020142).
PO:0020142
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of an inflorescence axis (PO:0020122).
inflorescence axis morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of an inflorescence axis (PO:0020122).
PO:0020122
TO:cooperl
An inflorescence axis morphology trait (TO:0000782) which is the size of an inflorescence axis (PO:0020122).
inflorescence axis size
An inflorescence axis morphology trait (TO:0000782) which is the size of an inflorescence axis (PO:0020122).
PO:0020122
TO:cooperl
A shoot system morphology trait (TO:0000077) that is a quality of a reproductive shoot system (PO:0025082).
reproductive shoot system morphology trait
A shoot system morphology trait (TO:0000077) that is a quality of a reproductive shoot system (PO:0025082).
PO:0025082
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the weight of an inflorescence (PO:0009049).
head weight (narrow)
inflorescence weight
An inflorescence morphology trait (TO:0000373) which is the weight of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the width of an inflorescence (PO:0009049).
head width (narrow)
INFLWD (related)
inflorescence width
An inflorescence morphology trait (TO:0000373) which is the width of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
A plant structure morphology trait (TO:0000839) which is a quality of a multi-tissue plant structure (PO:0025496).
multi-tissue plant structure morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a multi-tissue plant structure (PO:0025496).
PO:0025496
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a cardinal organ part of a multi-tissue plant structure (PO:0025498).
cardinal part of a multi-tissue plant structure morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a cardinal organ part of a multi-tissue plant structure (PO:0025498).
PO:0025498
TO:moorel
A plant morphology trait (TO:0000017) which is a quality of a plant structure (PO:0009011).
plant structure morphology trait
A plant morphology trait (TO:0000017) which is a quality of a plant structure (PO:0009011).
PO:0009011
TO:cooperl
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a collective plant structure (PO:0025497).
collective plant structure morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a collective plant structure (PO:0025497).
PO:0025497
TO:cooperl
TO:moorel
A collective plant structure morphology trait (TO:0000840) which is a quality of a collective plant organ structure (PO:0025007).
collective plant organ structure morphology trait
A collective plant structure morphology trait (TO:0000840) which is a quality of a collective plant organ structure (PO:0025007).
PO:0025007
TO:cooperl
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a portion of plant tissue (PO:0009007).
portion of plant tissue morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a portion of plant tissue (PO:0009007).
PO:0009007
TO:moorel
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a collective phyllome structure (PO:0025023).
collective phyllome structure morphology trait
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a collective phyllome structure (PO:0025023).
PO:0025023
TO:cooperl
TO:moorel
An inflorescence morphology trait (TO:0000373) which is a quality of a panicle inflorescence (PO:0030123).
panicle related trait (related)
panicle inflorescence morphology trait
An inflorescence morphology trait (TO:0000373) which is a quality of a panicle inflorescence (PO:0030123).
TO:cooperl
TO:moorel
A flower morphology trait (TO:0000499) which is the length of a flower (PO:0009046).
flower length
A flower morphology trait (TO:0000499) which is the length of a flower (PO:0009046).
PO:0009046
TO:moorel
A plant organ morphology trait (TO:0000736) which is a quality of a floral organ (PO:0025395).
floral organ morphology trait
A plant organ morphology trait (TO:0000736) which is a quality of a floral organ (PO:0025395).
PO:0025395
TO:moorel
A phyllome morphology trait (TO:0000747) which is a quality of a sporophyll (PO:0009026).
sporophyll morphology trait
A phyllome morphology trait (TO:0000747) which is a quality of a sporophyll (PO:0009026).
PO:0009026
TO:moorel
A sporophyll morphology trait (TO:0000866) which is a quality of a megasporophyll (PO:0009027).
megasporophyll morphology trait
A sporophyll morphology trait (TO:0000866) which is a quality of a megasporophyll (PO:0009027).
PO:0009027
TO:moorel
A shoot system yield trait (TO:0000327) which is comprised of leaves (PO:0025034) or parts of leaves.
leaf yield trait
A shoot system yield trait (TO:0000327) which is comprised of leaves (PO:0025034) or parts of leaves.
TO:cooperl
A shoot system yield trait (TO:0000327) which is the yield of fruits (PO:0009001).
fruit yield trait
A shoot system yield trait (TO:0000327) which is the yield of fruits (PO:0009001).
TO:cooperl
A leaf weight trait (TO:0000505) which is the the measure of the wet weight of a leaf (PO:0025034).
leaf wet weight
A leaf weight trait (TO:0000505) which is the the measure of the wet weight of a leaf (PO:0025034).
PO:0025034
TO:moorel
A stem morphology trait (TO:0000361) which is the size of a stem (PO:0009047).
core size (narrow)
stalk size (related)
stem size
A stem morphology trait (TO:0000361) which is the size of a stem (PO:0009047).
PO:0009047
TO:moorel
An infructescence morphology trait (TO:0000920) which is the number of fruits (PO:0009001).
accessory fruit number (narrow)
fruit number trait
An infructescence morphology trait (TO:0000920) which is the number of fruits (PO:0009001).
PO:0009001
TO:moorel
A harvest index (TO:0000128) which is the percent of usable fruit (PO:0009001).
fruit harvest index
A harvest index (TO:0000128) which is the percent of usable fruit (PO:0009001).
PO:0009001
TO:moorel
A harvest index (TO:0000128) which is the percent of usable leaves (PO:0025034).
leaf harvest index
A harvest index (TO:0000128) which is the percent of usable leaves (PO:0025034).
PO:0025034
TO:moorel
A harvest index (TO:0000128) which is the percent of usable seeds (PO:0009010).
seed harvest index
A harvest index (TO:0000128) which is the percent of usable seeds (PO:0009010).
PO:0009010
TO:moorel
A shoot system yield trait (TO:0000327) which is the yield of seeds (PO:0009010).
seed yield trait
A shoot system yield trait (TO:0000327) which is the yield of seeds (PO:0009010).
PO:0009010
TO:cooperl
TO:moorel
A caryopsis fruit morphology trait (TO:0001079) which is the weight of a caryopsis fruit (grain or kernel; PO:0030104).
GRWT (exact)
caryopsis fruit weight (exact)
kernel weight (exact)
20 kernel weight (narrow)
kwt (related)
grain weight
A caryopsis fruit morphology trait (TO:0001079) which is the weight of a caryopsis fruit (grain or kernel; PO:0030104).
TO:cooperl
kwt (related)
MaizeGDB:78154
A reproductive shoot system morphology trait (TO:0000786) which is a quality of the infructescence (PO:0006342).
infructescence morphology trait
A reproductive shoot system morphology trait (TO:0000786) which is a quality of the infructescence (PO:0006342).
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of an infructescence axis (PO:0025242).
infructescence axis morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of an infructescence axis (PO:0025242).
TO:cooperl
An infructescence axis morphology trait (TO:0000921) which is the weight of a cob.
cob weight
An infructescence axis morphology trait (TO:0000921) which is the weight of a cob.
TO:moorel
An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597).
earwt (related)
ear weight
An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597).
TO:cooperl
earwt (related)
MaizeGDB:???
A plant quality trait (TO:0000597) which is the commercial and /or economical value of a seed (PO:0009010) , or its overall improvement.
seed quality trait
A plant quality trait (TO:0000597) which is the commercial and /or economical value of a seed (PO:0009010) , or its overall improvement.
TO:cooperl
A shoot system yield trait (TO:0000327) which is a quality of an infructescence (PO:0006342), or the number born on a plant.
seeds per panicle (related)
infructescence yield trait
A shoot system yield trait (TO:0000327) which is a quality of an infructescence (PO:0006342), or the number born on a plant.
TO:cooperl
An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per ear infructescence (PO:0025597).
kernel number per ear
An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per ear infructescence (PO:0025597).
PMID:22027895
TO:cooperl
An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per row on an ear infructescence (PO:0025597).
kernel number per row
An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per row on an ear infructescence (PO:0025597).
TO:cooperl
An infructescence yield trait (TO:0000936) which is the number of ranks of cupules per ear infructescence (PO:0025597).
rank number per ear
An infructescence yield trait (TO:0000936) which is the number of ranks of cupules per ear infructescence (PO:0025597).
TO:cooperl
A stem morphology trait (TO:0000361) which is the weight of a stem (PO:0009047).
stalk weight (narrow)
stem weight
A stem morphology trait (TO:0000361) which is the weight of a stem (PO:0009047).
TO:cooperl
A shoot system morphology trait (TO:0000077) which is the number of stems (PO:0009047).
stalk number (narrow)
stem number
A shoot system morphology trait (TO:0000077) which is the number of stems (PO:0009047).
TO:cooperl
An infructescence axis morphology trait (TO:0000921) which is the length of a cob.
cob length
An infructescence axis morphology trait (TO:0000921) which is the length of a cob.
TO:ejohnson
An infructescence axis morphology trait (TO:0000921) which is the width of a cob.
cob width
An infructescence axis morphology trait (TO:0000921) which is the width of a cob.
TO:ejohnson
An infructescence axis morphology trait (TO:0000921) which is the area of a cob.
cob area
An infructescence axis morphology trait (TO:0000921) which is the area of a cob.
TO:ejohnson
An inflorescence morphology trait (TO:0000373) which is a quality of an ear inflorescence (PO:0020136).
ear inflorescence morphology trait
An inflorescence morphology trait (TO:0000373) which is a quality of an ear inflorescence (PO:0020136).
TO:cooperl
A caryopsis fruit morphology trait (TO:0001079) which is the width of a grain (PO:0009001).
caryopsis width (exact)
kernel width (exact)
grain width
A caryopsis fruit morphology trait (TO:0001079) which is the width of a grain (PO:0009001).
TO:austin_meier
TO:cooperl
An infructescence morphology trait (TO:0000920) which is a quality of the ear infructescence (PO:0025597).
ear infructescence morphology trait
An infructescence morphology trait (TO:0000920) which is a quality of the ear infructescence (PO:0025597).
TO:Ethan_Johnson
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a root system (PO:0025025).
root system morphology trait
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a root system (PO:0025025).
ethan_johnson
PO:0025025
A leaf weight trait (TO:0000505) which is the dry weight of a leaf (PO:0025034).
leaf dry weight
A leaf weight trait (TO:0000505) which is the dry weight of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:moorel
A ratio of root dry weight to total plant dry weight.
root dry weight to total plant dry weight ratio (related)
root to total biomass ratio
A ratio of root dry weight to total plant dry weight.
Gramene:pankaj_jaiswal
Volume of the sap exudate collected from the cut parts of a plant.
Sap per tiller (related)
exudate sap volume
Volume of the sap exudate collected from the cut parts of a plant.
Gramene:pankaj_jaiswal
A mineral and ion content trait (TO:0000465) which is the phosphorus cation (CHEBI:33467) composition in a plant structure (PO:0009011).
PHOCN (related)
phosphorus content
A mineral and ion content trait (TO:0000465) which is the phosphorus cation (CHEBI:33467) composition in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
Amount of phosphorus in the leaf.
LFPHOCN (related)
leaf phosphorus content
Amount of phosphorus in the leaf.
Gramene:pankaj_jaiswal
It is a ratio of harvest index in stress to that of control environment.
relative harvest index
It is a ratio of harvest index in stress to that of control environment.
Gramene:pankaj_jaiswal
A stem morphology trait (TO:0000361) which is the width of a stem (PO:0009047).
culm diameter (related)
culm width (related)
stem width
A stem morphology trait (TO:0000361) which is the width of a stem (PO:0009047).
Gramene:cwt
PO:0009047
TO:moorel
A yield trait (TO:0000371) which is the yield of roots (PO:0009005).
root yield
A yield trait (TO:0000371) which is the yield of roots (PO:0009005).
TO:cooperl
A root system morphology trait (TO:0000985) which is the width of the root system (PO:0025025).
root system width
A root system morphology trait (TO:0000985) which is the width of the root system (PO:0025025).
PMID:21454799
TO:cooperl
A shoot system yield trait (TO:0000327) which is the yield of shoot axis tubers (PO:0004543).
shoot axis tuber yield
A shoot system yield trait (TO:0000327) which is the yield of shoot axis tubers (PO:0004543).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a berry fruit (PO:0030108).
berry fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a berry fruit (PO:0030108).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a caryopsis fruit (PO:0030104).
grain morphology trait (exact)
kernel morphology trait (exact)
caryopsis fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a caryopsis fruit (PO:0030104).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a legume fruit (PO:0030100).
pod morphology trait (exact)
legume fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a legume fruit (PO:0030100).
TO:cooperl
A berry fruit morphology trait (TO:0001077) which is the weight of a berry fruit (PO:0030108).
berry fruit weight
A berry fruit morphology trait (TO:0001077) which is the weight of a berry fruit (PO:0030108).
TO:cooperl
A legume fruit morphology trait (TO:0001082) which is the weight of a legume fruit (PO:0030100).
pod weight (exact)
legume fruit weight
A legume fruit morphology trait (TO:0001082) which is the weight of a legume fruit (PO:0030100).
TO:cooperl
A berry fruit morphology trait (TO:0001077) which is a quality of a pepo fruit (PO:0030111).
pepo morphology trait (exact)
pepo fruit morphology trait
A berry fruit morphology trait (TO:0001077) which is a quality of a pepo fruit (PO:0030111).
TO:cooperl
A floral organ morphology trait (TO:0000862) which is the size of a floral organ (PO:0025395).
floral organ size
A floral organ morphology trait (TO:0000862) which is the size of a floral organ (PO:0025395).
Gramene:pankaj_jaiswal
PO:0025395
TO:moorel
A pistil morphology trait (TO:0000223) which is the size of a pistil.
pistil size
A pistil morphology trait (TO:0000223) which is the size of a pistil.
Gramene:pankaj_jaiswal
TO:moorel
A pistil morphology trait (TO:0000223) which is the length of a pistil.
pistil length
A pistil morphology trait (TO:0000223) which is the length of a pistil.
Gramene:pankaj_jaiswal
TO:moorel
A floral organ morphology trait (TO:0000862) which is the length of a floral organ (PO:0025395).
floral organ length
A floral organ morphology trait (TO:0000862) which is the length of a floral organ (PO:0025395).
Gramene:pankaj_jaiswal
PO:0025395
TO:moorel
A floral organ morphology trait (TO:0000862) which is the width of a floral organ (PO:0025395).
floral organ width
A floral organ morphology trait (TO:0000862) which is the width of a floral organ (PO:0025395).
Gramene:pankaj_jaiswal
PO:0025395
TO:moorel
A fruit morphology trait (TO:0002629) which is the size of a fruit (PO:0009001).
kernel size (narrow)
pod size (narrow)
FRSZ (related)
fruit size
A fruit morphology trait (TO:0002629) which is the size of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
TO:moorel
A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001).
GRLG (narrow)
grain length (narrow)
pod length (narrow)
fruit length
A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
TO:moorel
A fruit morphology trait (TO:0002629) which is the width of a fruit (PO:0009001).
kernel width (narrow)
FRWD (related)
kernel plumpness (related)
percentage of plump kernels (related)
plump grain (related)
fruit width
A fruit morphology trait (TO:0002629) which is the width of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
TO:moorel
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a fruit (PO:0009001).
fruit morphology (related)
fruit morphology trait
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
TO:moorel
A leaf morphology trait (TO:0000748) which is the size of a leaf (PO:0025034).
leaf size
A leaf morphology trait (TO:0000748) which is the size of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:cooperl
A pistil morphology trait (TO:0000223) which is the number of pistils in the gynoecium (PO:0009062).
pistil number
A pistil morphology trait (TO:0000223) which is the number of pistils in the gynoecium (PO:0009062).
Gramene:pankaj_jaiswal
PO:0009062
TO:moorel
Amount of phosphorus in the seed.
SDPHOCN (related)
seed phosphorus content
Amount of phosphorus in the seed.
Gramene:pankaj_jaiswal
A plant structure morphology trait (TO:0000839) which is a quality of a plant cell (PO:0009002).
plant cell morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a plant cell (PO:0009002).
Gramene:pankaj_jaiswal
PO:0009002
TO:moorel
A plant cell morphology trait (TO:0002683) which is the size of a plant cell (PO:0009002) type.
plant cell size
A plant cell morphology trait (TO:0002683) which is the size of a plant cell (PO:0009002) type.
Gramene:pankaj_jaiswal
PO:0009002
TO:moorel
A plant quality trait (TO:0000597) which is the commercial and /or economical value of a fruit (PO:0009001) , or its overall improvement.
fruit quality trait
A plant quality trait (TO:0000597) which is the commercial and /or economical value of a fruit (PO:0009001) , or its overall improvement.
Gramene:pankaj_jaiswal
TO:cooperl
An inflorescence morphology trait (TO:0000582 ) which is the number of flowers (PO:0009046).
flower number trait
An inflorescence morphology trait (TO:0000582 ) which is the number of flowers (PO:0009046).
Gramene:pankaj_jaiswal
PO:0009046
TO:moorel
A fruit morphology trait (TO:0002629) that is the weight of a fruit (PO:0009001).
fruit weight
A fruit morphology trait (TO:0002629) that is the weight of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
TO:cooperl
A fruit number trait (TO:0000894) which is the number of grains (caryopsis fruit; PO:0030104) in an infructescence (PO:0006342).
GRNB (related)
kernel number (related)
grain number
A fruit number trait (TO:0000894) which is the number of grains (caryopsis fruit; PO:0030104) in an infructescence (PO:0006342).
Gramene:pankaj_jaiswal
PO:0006342
PO:0030104
TO:moorel
TO:cooperl
A stem weight trait (TO:0000952) which is the fresh weight of a stem (PO:0009047).
stem fresh weight
A stem weight trait (TO:0000952) which is the fresh weight of a stem (PO:0009047).
TO:malaporte
A stem weight trait (TO:0000952) which is the dry weight of a stem (PO:0009047).
stem dry weight
A stem weight trait (TO:0000952) which is the dry weight of a stem (PO:0009047).
TO:malaporte
An infructescence weight trait (TO:0000583) which is the fresh weight of an infructescence (PO:0006342).
bunch fresh weight (narrow)
infructescence fresh weight
An infructescence weight trait (TO:0000583) which is the fresh weight of an infructescence (PO:0006342).
TO:malaporte
An infructescence weight trait (TO:0000583) which is the dry weight of an infructescence (PO:0006342).
bunch dry weight (narrow)
infructescence dry weight
An infructescence weight trait (TO:0000583) which is the dry weight of an infructescence (PO:0006342).
TO:malaporte
A fruit weight trait (TO:0002746) that is the fresh weight of a fruit (PO:0009001).
fruit fresh weight
A fruit weight trait (TO:0002746) that is the fresh weight of a fruit (PO:0009001).
TO:malaporte
A fruit weight trait (TO:0002746) that is the dry weight of a fruit (PO:0009001).
fruit dry weight
A fruit weight trait (TO:0002746) that is the dry weight of a fruit (PO:0009001).
TO:malaporte
A reproductive shoot system morphology trait (TO:0000786) which is a quality of a second order infructescence (PO:0025241).
second order infructescence morphology trait
A reproductive shoot system morphology trait (TO:0000786) which is a quality of a second order infructescence (PO:0025241).
TO:malaporte
A second order infructescence morphology trait (TO:0003006) which is the fresh weight of a second order infructescence (PO:0025241).
hand fresh weight
A second order infructescence morphology trait (TO:0003006) which is the fresh weight of a second order infructescence (PO:0025241).
TO:malaporte
A second order infructescence morphology trait (TO:0003006) which is the dry weight of a second order infructescence (PO:0025241).
hand dry weight
A second order infructescence morphology trait (TO:0003006) which is the dry weight of a second order infructescence (PO:0025241).
TO:malaporte
A tuberous root tuber morphology trait (TO:1000007) which is the weight of a tuberous root tuber (PO:0025476).
storage root weight (exact)
tuberous root tuber weight
A tuberous root tuber morphology trait (TO:1000007) which is the weight of a tuberous root tuber (PO:0025476).
TO:malaporte
A tuberous root tuber weight trait (TO:0003009) which is the fresh weight of a tuberous root tuber (PO:0025476).
storage root fresh weight (exact)
tuberous root tuber fresh weight
A tuberous root tuber weight trait (TO:0003009) which is the fresh weight of a tuberous root tuber (PO:0025476).
TO:malaporte
A tuberous root tuber weight trait (TO:0003009) which is the dry weight of a tuberous root tuber (PO:0025476).
storage root dry weight (exact)
tuberous root tuber dry weight
A tuberous root tuber weight trait (TO:0003009) which is the dry weight of a tuberous root tuber (PO:0025476).
TO:malaporte
A subterranean shoot axis tuber weight trait (TO:0000746) which is the fresh weight of a subterranean shoot axis tuber (PO:0004547).
tuber fresh weight (exact)
subterranean shoot axis tuber fresh weight
A subterranean shoot axis tuber weight trait (TO:0000746) which is the fresh weight of a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A subterranean shoot axis tuber weight trait (TO:0000746) which is the dry weight of a subterranean shoot axis tuber (PO:0004547).
tuber dry weight (exact)
subterranean shoot axis tuber dry weight
A subterranean shoot axis tuber weight trait (TO:0000746) which is the dry weight of a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A grain weight (TO:0000919) which is the fresh weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
grain fresh weight
A grain weight (TO:0000919) which is the fresh weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
TO:malaporte
A grain weight (TO:0000919) which is the dry weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
grain dry weight
A grain weight (TO:0000919) which is the dry weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
TO:malaporte
A 100-grain weight (TO:0000269) which is the fresh weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
100-grain fresh weight
A 100-grain weight (TO:0000269) which is the fresh weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:malaporte
A grain weight (TO:0000269) which is the dry weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
100-grain dry weight
A grain weight (TO:0000269) which is the dry weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:malaporte
A grain weight (TO:0000382) which is the fresh weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
1000-grain fresh weight
A grain weight (TO:0000382) which is the fresh weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:malaporte
A grain weight (TO:0000382) which is the dry weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
1000-grain dry weight
A grain weight (TO:0000382) which is the dry weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:malaporte
An infructescence weight trait (TO:0000014) which is the fresh weight of a panicle inflorescence (PO:0030123).
panicle fresh weight
An infructescence weight trait (TO:0000014) which is the fresh weight of a panicle inflorescence (PO:0030123).
TO:malaporte
An infructescence weight trait (TO:0000014) which is the dry weight of a panicle inflorescence (PO:0030123).
panicle dry weight
An infructescence weight trait (TO:0000014) which is the dry weight of a panicle inflorescence (PO:0030123).
TO:malaporte
An ear infructescence weight trait (TO:0000923) that is the fresh weight of an ear infructescence (PO:0025597).
ear fresh weight
An ear infructescence weight trait (TO:0000923) that is the fresh weight of an ear infructescence (PO:0025597).
TO:malaporte
An ear infructescence weight trait (TO:0000923) that is the dry weight of an ear infructescence (PO:0025597).
ear dry weight
An ear infructescence weight trait (TO:0000923) that is the dry weight of an ear infructescence (PO:0025597).
TO:malaporte
A cob weight trait (TO:0000922) which is the fresh weight of a cob (ear infructescence axis; PO:0025623).
cob fresh weight
A cob weight trait (TO:0000922) which is the fresh weight of a cob (ear infructescence axis; PO:0025623).
TO:malaporte
A cob weight trait (TO:0000922) which is the dry weight of a cob (ear infructescence axis; PO:0025623).
cob dry weight
A cob weight trait (TO:0000922) which is the dry weight of a cob (ear infructescence axis; PO:0025623).
TO:malaporte
An inflorescence weight (TO:0000803) trait which is the weight of a spike inflorescence (PO:0030117).
spike weight
An inflorescence weight (TO:0000803) trait which is the weight of a spike inflorescence (PO:0030117).
TO:malaporte
A spike weight (TO:0003026) trait which is the fresh weight of a spike inflorescence (PO:0030117).
spike fresh weight
A spike weight (TO:0003026) trait which is the fresh weight of a spike inflorescence (PO:0030117).
TO:malaporte
A spike weight (TO:0003026) trait which is the dry weight of a spike inflorescence (PO:0030117).
spike dry weight
A spike weight (TO:0003026) trait which is the dry weight of a spike inflorescence (PO:0030117).
TO:malaporte
A legume fruit weight trait (TO:0001092) which is the dry weight of a legume fruit (PO:0030100).
pod dry weight (exact)
legume fruit dry weight
A legume fruit weight trait (TO:0001092) which is the dry weight of a legume fruit (PO:0030100).
TO:malaporte
A legume fruit weight trait (TO:0001092) which is the fresh weight of a legume fruit (PO:0030100).
pod fresh weight (exact)
legume fruit fresh weight
A legume fruit weight trait (TO:0001092) which is the fresh weight of a legume fruit (PO:0030100).
TO:malaporte
A pepo fruit morphology trait (TO:0001098) which is the weight of a pepo fruit (PO:0030111).
banana finger weight (exact)
pepo fruit weight
A pepo fruit morphology trait (TO:0001098) which is the weight of a pepo fruit (PO:0030111).
TO:malaporte
A pepo fruit weight trait (TO:0003031) which is the fresh weight of a pepo fruit (PO:0030111).
banana finger fresh weight (exact)
pepo fruit fresh weight
A pepo fruit weight trait (TO:0003031) which is the fresh weight of a pepo fruit (PO:0030111).
TO:malaporte
A pepo fruit weight trait (TO:0003031) which is the dry weight of a pepo fruit (PO:0030111).
banana finger dry weight (exact)
pepo fruit dry weight
A pepo fruit weight trait (TO:0003031) which is the dry weight of a pepo fruit (PO:0030111).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a leaf (PO:0025034).
leaf moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a leaf (PO:0025034).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a stem (PO:0009047).
stem moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a stem (PO:0009047).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a root (PO:0009005).
root moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a root (PO:0009005).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of the whole plant (PO:0000003).
plant moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of the whole plant (PO:0000003).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of the shoot system (PO:0009006).
shoot moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of the shoot system (PO:0009006).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a infructescence (PO:0006342).
bunch moisture content (narrow)
infructescence moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a infructescence (PO:0006342).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a pepo fruit (PO:0030111).
banana finger moisture content (exact)
pepo fruit moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a pepo fruit (PO:0030111).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a second order infructescence (PO:0025241).
banana hand moisture content (exact)
second order infructescence moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a second order infructescence (PO:0025241).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a tuberous root tuber (PO:0025476).
storage root moisture content (exact)
tuberous root tuber moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a tuberous root tuber (PO:0025476).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a subterranean shoot axis tuber (PO:0004547).
tuber moisture content (exact)
subterranean shoot axis tuber moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a legume fruit (PO:0030100).
pod moisture content (exact)
legume fruit moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a legume fruit (PO:0030100).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a panicle inflorescence (PO:0030123).
panicle moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a panicle inflorescence (PO:0030123).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a ear infructescence (PO:0025597).
ear moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a ear infructescence (PO:0025597).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a ear infructescence axis (PO:0025623).
cob moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a ear infructescence axis (PO:0025623).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of moisture of a spike inflorescence (PO:0030117).
spike moisture content
A moisture content trait (TO:0000228) which is the amount of moisture of a spike inflorescence (PO:0030117).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a leaf (PO:0025034).
leaf potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a leaf (PO:0025034).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a stem (PO:0009047).
stem potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a stem (PO:0009047).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in an infructescence (PO:0006342).
bunch potassium content (narrow)
infructescence potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in an infructescence (PO:0006342).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a pepo fruit (PO:0030111).
banana finger potassium content (exact)
pepo fruit potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a pepo fruit (PO:0030111).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a second order infructescence (PO:0025241).
banana hand potassium content (exact)
second order infructescence potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a second order infructescence (PO:0025241).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a tuberous root tuber (PO:0025476).
storage root potassium content (exact)
tuberous root tuber potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a tuberous root tuber (PO:0025476).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of potassium cation (CHEBI:29103) in a subterranean shoot axis tuber (PO:0004547).
tuber potassium content (exact)
subterranean shoot axis tuber potassium content
A moisture content trait (TO:0000228) which is the amount of potassium cation (CHEBI:29103) in a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a caryopsis fruit (PO:0030104).
grain potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a caryopsis fruit (PO:0030104).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a panicle inflorescence (PO:0030123).
panicle potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a panicle inflorescence (PO:0030123).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a ear infructescence (PO:0025597).
ear potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a ear infructescence (PO:0025597).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a ear infructescence axis (PO:0025623).
cob potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a ear infructescence axis (PO:0025623).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a spike inflorescence (PO:0030117).
spike potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a spike inflorescence (PO:0030117).
TO:malaporte
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a legume fruit (PO:0030100).
pod potassium content (exact)
legume fruit potassium content
A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a legume fruit (PO:0030100).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a stem (PO:0009047).
stem nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a stem (PO:0009047).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in an infructescence (PO:0006342).
bunch nitrogen content (narrow)
infructescence nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in an infructescence (PO:0006342).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a pepo fruit (PO:0030111).
banana finger nitrogen content (exact)
pepo fruit nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a pepo fruit (PO:0030111).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a second order infructescence (PO:0025241).
banana hand nitrogen content (exact)
second order infructescence nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a second order infructescence (PO:0025241).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a tuberous root tuber (PO:0025476).
storage root nitrogen content (exact)
tuberous root tuber nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a tuberous root tuber (PO:0025476).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of nitrogen (CHEBI:51143) in a subterranean shoot axis tuber (PO:0004547).
tuber nitrogen content (exact)
subterranean shoot axis tuber nitrogen content
A moisture content trait (TO:0000228) which is the amount of nitrogen (CHEBI:51143) in a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a caryopsis fruit (PO:0030104).
grain nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a caryopsis fruit (PO:0030104).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a panicle inflorescence (PO:0030123).
panicle nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a panicle inflorescence (PO:0030123).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a ear infructescence (PO:0025597).
ear nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a ear infructescence (PO:0025597).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a ear infructescence axis (PO:0025623).
cob nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a ear infructescence axis (PO:0025623).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a spike inflorescence (PO:0030117).
spike nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a spike inflorescence (PO:0030117).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a legume fruit (PO:0030100).
pod nitrogen content (exact)
legume fruit nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a legume fruit (PO:0030100).
TO:malaporte
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a root (PO:0009005).
root nitrogen content
A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a root (PO:0009005).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a stem (PO:0009047).
stem phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a stem (PO:0009047).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in an infructescence (PO:0006342).
bunch phosphorus content (narrow)
infructescence phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in an infructescence (PO:0006342).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a pepo fruit (PO:0030111).
banana finger phosphorus content (exact)
pepo fruit phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a pepo fruit (PO:0030111).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a second order infructescence (PO:0025241).
banana hand phosphorus content (exact)
second order infructescence phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a second order infructescence (PO:0025241).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a tuberous root tuber (PO:0025476).
storage root phosphorus content (exact)
tuberous root tuber phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a tuberous root tuber (PO:0025476).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of phosphorus cation (CHEBI:33467) in a subterranean shoot axis tuber (PO:0004547).
tuber phosphorus content (exact)
subterranean shoot axis tuber phosphorus content
A moisture content trait (TO:0000228) which is the amount of phosphorus cation (CHEBI:33467) in a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a caryopsis fruit (PO:0030104).
grain phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a caryopsis fruit (PO:0030104).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a panicle inflorescence (PO:0030123).
panicle phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a panicle inflorescence (PO:0030123).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a ear infructescence (PO:0025597).
ear phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a ear infructescence (PO:0025597).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a ear infructescence axis (PO:0025623).
cob phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a ear infructescence axis (PO:0025623).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a spike inflorescence (PO:0030117).
spike phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a spike inflorescence (PO:0030117).
TO:malaporte
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a legume fruit (PO:0030100).
pod phosphorus content (exact)
legume fruit phosphorus content
A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a legume fruit (PO:0030100).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a leaf (PO:0025034).
leaf carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a leaf (PO:0025034).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a stem (PO:0009047).
stem carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a stem (PO:0009047).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a root (PO:0009005).
root carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a root (PO:0009005).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in an infructescence (PO:0006342).
bunch carbon content (narrow)
infructescence carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in an infructescence (PO:0006342).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a pepo fruit (PO:0030111).
banana finger carbon content (exact)
pepo fruit carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a pepo fruit (PO:0030111).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a second order infructescence (PO:0025241).
banana hand carbon content (exact)
second order infructescence carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a second order infructescence (PO:0025241).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a tuberous root tuber (PO:0025476).
storage root carbon content (exact)
tuberous root tuber carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a tuberous root tuber (PO:0025476).
TO:malaporte
A moisture content trait (TO:0000228) which is the amount of carbon (CHEBI:27594) in a subterranean shoot axis tuber (PO:0004547).
tuber carbon content (exact)
subterranean shoot axis tuber carbon content
A moisture content trait (TO:0000228) which is the amount of carbon (CHEBI:27594) in a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a caryopsis fruit (PO:0030104).
grain carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a caryopsis fruit (PO:0030104).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a panicle inflorescence (PO:0030123).
panicle carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a panicle inflorescence (PO:0030123).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a ear infructescence (PO:0025597).
ear carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a ear infructescence (PO:0025597).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a ear infructescence axis (PO:0025623).
cob carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a ear infructescence axis (PO:0025623).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a spike inflorescence (PO:0030117).
spike carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a spike inflorescence (PO:0030117).
TO:malaporte
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a legume fruit (PO:0030100).
pod carbon content (exact)
legume fruit carbon content
A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a legume fruit (PO:0030100).
TO:malaporte
A megasporophyll morphology trait (TO:0000867) which is a quality of a carpel (PO:0009030).
carpel morphology trait
A megasporophyll morphology trait (TO:0000867) which is a quality of a carpel (PO:0009030).
Gramene:pankaj_jaiswal
PO:0009030
TO:moorel
A carpel morphology trait (TO:0006012) which is the number of carpels (PO:0009030) in the gynoecium (PO:0009062).
carpel number
A carpel morphology trait (TO:0006012) which is the number of carpels (PO:0009030) in the gynoecium (PO:0009062).
Gramene:pankaj_jaiswal
PO:0009030
PO:0009062
TO:moorel
An inflorescence morphology trait (TO:0000373) which is the variation in size of inflorescence (PO:0009049).
inflorescence size
An inflorescence morphology trait (TO:0000373) which is the variation in size of inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
A panicle inflorescence morphology trait (TO:0000847) which is the variation in size of panicle inflorescence (PO:0030123).
panicle inflorescence size
A panicle inflorescence morphology trait (TO:0000847) which is the variation in size of panicle inflorescence (PO:0030123).
Gramene:pankaj_jaiswal
TO:moorel
The average width of a plant measured across an axis such as the main stem/stalk.
plant width
The average width of a plant measured across an axis such as the main stem/stalk.
Gramene:pankaj_jaiswal
Leaf Area Index (LAI) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows.
leaf area index
Leaf Area Index (LAI) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows.
Wikipedia:Leaf_area_index
A chlorophyll content trait (TO:0000495) which is the chlorophyll content of a leaf (PO:0025034).
leaf chlorophyll content
A chlorophyll content trait (TO:0000495) which is the chlorophyll content of a leaf (PO:0025034).
PO:0025034
TO:cooperl
A grain yield trait (TO:0000396) which is the ratio of grain weight (TO:0000919) to panicle weight (TO:0000014).
grain weight to panicle weight ratio
A grain yield trait (TO:0000396) which is the ratio of grain weight (TO:0000919) to panicle weight (TO:0000014).
TO:cooperl
A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a shoot system (PO:0009006).
shoot system potassium content
A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a shoot system (PO:0009006).
Gramene:cwt
ICRIS:019
TO:cooperl
https://search.proquest.com/docview/1426182399
The trait takes into account energy losses occurring in the animal in faeces, urine and CH4 and estimates how much energy (in calories or joules) a given unit of ground stover is actually available for meat and milk production . Value derived from chemical and in vitro analysis of dried and ground stover.
stover related traits (broad)
metabolised energy (exact)
metabolized energy of stover
The trait takes into account energy losses occurring in the animal in faeces, urine and CH4 and estimates how much energy (in calories or joules) a given unit of ground stover is actually available for meat and milk production . Value derived from chemical and in vitro analysis of dried and ground stover.
GCP:GCP_324.0000036
ICRISAT:Vincent_Vadez
ILRI:Michael_Blummel
stover related traits (broad)
GCP:GCP_324.000003
A trait to measure percent nitrogen concentration in the stover sample used for predicting crude protein (CP) content of stover by multiplication with a factor of 6.25 (CP = N x 6.25). This concentration is one of the criteria to assess the quality of fodder. Value derived from the analysis of stover using Near Infrared Reflectance Spectrophotometry (NIRS).
stover related traits
stover nitrogen content
A trait to measure percent nitrogen concentration in the stover sample used for predicting crude protein (CP) content of stover by multiplication with a factor of 6.25 (CP = N x 6.25). This concentration is one of the criteria to assess the quality of fodder. Value derived from the analysis of stover using Near Infrared Reflectance Spectrophotometry (NIRS).
GCP:GCP_324.0000016
ICRISAT:Vincent_Vadez
ILRI:Michael_Blummel
stover related traits
GCP:GCP_324.000003
A mineral and ion content trait (TO:0000465) which is the amount of nitrogen (CHEBI:51143) in a plant structure (PO:0009011).
nitrogen content
A plant cell morphology trait (TO:0002683) which is the length of a plant cell (PO:0009002).
plant cell length
A plant cell morphology trait (TO:0002683) which is the length of a plant cell (PO:0009002).
Gramene:pankaj_jaiswal
PO:0009002
TO:moorel
A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a shoot system (PO:0009006).
shoot system phosphorus content
A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a shoot system (PO:0009006).
TO:contributors
https://search.proquest.com/docview/1426182399
A trait to measure the ethanol yield from the industrial processing of feedstock (biomass).
ethanol yield from biomass
A trait to measure the ethanol yield from the industrial processing of feedstock (biomass).
Gramene:pankaj_jaiswal
TO:contributors
A tuber morphology trait (TO:0000741) which is the quality of a tuberous root tuber (PO:0025476).
tuberous root tuber morphology trait
A tuber morphology trait (TO:0000741) which is the quality of a tuberous root tuber (PO:0025476).
TO:malaporte
A whole plant morphology trait (TO:0000398) which is the size of a whole plant (PO:0000003).
planta entera (Spanish) size (exact)
bush size (narrow)
frutex size (narrow)
frutices size (narrow)
gametophyte size (narrow)
herb size (narrow)
liana size (narrow)
prothalli size (narrow)
prothallium size (narrow)
prothallus size (narrow)
seedling size (narrow)
shrub size (narrow)
sporophyte size (narrow)
suffrutex size (narrow)
suffrutices size (narrow)
tree size (narrow)
vine size (narrow)
woody clump size (narrow)
clonal colony size (related)
colony size (related)
whole plant size
true
true
true
A whole plant morphology trait (TO:0000398) which is the size of a whole plant (PO:0000003).
TO:cooperl
planta entera (Spanish) size (exact)
TO:TermGenie
bush size (narrow)
TO:TermGenie
frutex size (narrow)
TO:TermGenie
frutices size (narrow)
TO:TermGenie
gametophyte size (narrow)
TO:TermGenie
herb size (narrow)
TO:TermGenie
liana size (narrow)
TO:TermGenie
prothalli size (narrow)
TO:TermGenie
prothallium size (narrow)
TO:TermGenie
prothallus size (narrow)
TO:TermGenie
seedling size (narrow)
TO:TermGenie
shrub size (narrow)
TO:TermGenie
sporophyte size (narrow)
TO:TermGenie
suffrutex size (narrow)
TO:TermGenie
suffrutices size (narrow)
TO:TermGenie
tree size (narrow)
TO:TermGenie
vine size (narrow)
TO:TermGenie
woody clump size (narrow)
TO:TermGenie
clonal colony size (related)
TO:TermGenie
colony size (related)
TO:TermGenie
A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a root system (PO:0025025).
root K content (related)
root system potassium content
A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A phosphorus content trait TO:0001024 which is the phosphorus cation (CHEBI:33467) composition in a root system (PO:0025025).
root P content (related)
root system phosphorus content
A phosphorus content trait TO:0001024 which is the phosphorus cation (CHEBI:33467) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome.
biological structure
connected biological structure
anatomical structure
Anatomical structure that performs a specific function or group of functions [WP].
anatomical unit
body organ
element
organ
The surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm.
surface (external) ectoderm
surface ectoderm
external ectoderm
Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence.
blastula embryo
blastosphere
blastula
Anatomical entity that has mass.
material anatomical entity
Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function.
system
body system
connected anatomical system
organ system
anatomical systems
anatomical system
Anatomical structure that is an individual member of a species and consists of more than one cell.
organism
multi-cellular organism
animal
Koerper
body
whole body
whole organism
multicellular organism
Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue.
acellular anatomical structures
acellular anatomical structure
Anatomical group that has its parts adjacent to one another.
anatomical cluster
Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation.
portion of tissue
tissue portion
simple tissue
tissue
Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO].
epithelial tissue
portion of epithelium
epithelium
Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]
stratified epithelium
laminated epithelium
multilaminar epithelium
Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]
simple epithelium
unilaminar epithelia
unilaminar epithelium
Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
embryonic organism
developing organism
developmental tissue
embryo
A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm.
embryonic tissue
germinal layer
primary germ layer
embryonic germ layer
embryonic germ layers
germ layer
Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue.
embryonic ectoderm
ectoderm
Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.
anatomical entity
Anatomical structure that is part of an embryo.
developing embryonic structure
embryonic anatomical structure
developing structure
embryonale Struktur
embryonic structures
embryonic structure
Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle.
integumentary system
body surface
dermal system
external covering of organism
integumentum commune
organism surface
surface
integumental system
In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]
epiblast
blastocyst
ectoblast
epiblastus
primitive ectoderm
epiblast (generic)
Anatomical structure that overlaps the outer epithelial layer and is adjacent to the space surrounding the organism.
anatomical surface feature
surface feature
surface region
surface structures
surface structure
An anatomical structure that develops (entirely or partially) from the ectoderm.
ectodermal deriviative
ectoderm-derived structure
A portion of tissue that is part of an embryo.
portion of embryonic tissue
developing tissue
embryonic tissue
developing structure
developmental structure
developmental tissue
developing anatomical structure
A acellular anatomical structure that is the bounding layer of a anatomical structure.
acellular membrane
An acellular membrane that is part of the epithelium, lies adjacent to the epithelial cells, and is the fusion of the the basal lamina and the reticular lamina.
basement membrane of connective tissue
membrana basalis
basement membrane
basement membrane of epithelium
Portion of embryonic tissue determined by fate mapping to become a structure.
future structure
presumptive structures
presumptive structure
Presumptive structure of the blastula that will develop into ectoderm.
presumptive epidermis
presumptive ectoderm
A rigid covering that envelops an object.
shell
Organism at the cleavage stage.
cleaving embryo
The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO].
epidermis
epidermis (sensu Metazoa)
outer epidermal layer
outer epithelial layer
hypoderm
hypodermis
outer epithelium
Outermost layer of cells surrounding the embryo.
EVL
enveloping layer
enveloping layer of ectoderm
An anatomical structure that has more than one cell as a part.
multicellular structure
multicellular anatomical structure
germ layer / neural crest
Epithelium composed of cells that develops from the ectoderm[FMA,modified].
ectoderm-derived epithelium
ecto-epithelium
unit
length unit
A unit which is a standard measure of the distance between two points.
length unit
mass unit
A unit which is a standard measure of the amount of matter/energy of a physical object.
mass unit
time unit
A unit which is a standard measure of the dimension in which events occur in sequence.
time unit
electric current unit
temperature unit
substance unit
luminous intensity unit
base unit
prefix
area unit
acceleration unit
angular velocity unit
angular acceleration unit
concentration unit
mass density unit
luminance unit
area density unit
molar mass unit
molar volume unit
momentum unit
rotational frequency unit
specific volume unit
speed/velocity unit
unit of molarity
unit of molality
unit of normality
volume unit
frequency unit
force unit
pressure unit
energy unit
power unit
illuminance unit
luminous flux unit
catalytic activity unit
angle unit
plane angle unit
solid angle unit
radiation unit
activity (of a radionuclide) unit
absorbed dose unit
dose equivalent unit
exposure unit
irradiance unit
light unit
radiant intensity unit
radiance unit
parts per notation unit
unit per volume unit
density unit
linear density unit
dimensionless unit
percent
count unit
ratio
fraction
cell concentration unit
catalytic (activity) concentration unit
volume per unit volume
plaque forming unit per volume
electric potential difference unit
electric charge
magnetic flux unit
magnetic flux density unit
information unit
image resolution unit
spatial resolution unit
surface tension unit
viscosity unit
conduction unit
electrical conduction unit
heat conduction unit
electric field strength unit
volumetric flow rate unit
rate unit
giga
mega
kilo
deci
milli
centi
micro
nano
pico
femto
atto
dose unit
t/ha
ton per hectare
meter based unit
second based unit
ampere based unit
kelvin based unit
mole based unit
candela based unit
angstrom based unit
gram based unit
degree Celsius based unit
minute based unit
hour based unit
day based unit
week based unit
month based unit
year based unit
molar based unit
molal based unit
normal based unit
mole fraction based unit
meter per second per second based unit
radian per second per second based unit
radian per second based unit
square meter based unit
square centimeter based unit
square millimeter based unit
gram per cubic centimeter based unit
candela per square meter based unit
gram per mole based unit
cubic meter per mole based unit
cubic centimeter per mole based unit
turns per second based unit
cubic meter per kilogram based unit
meter per second based unit
cubic meter based unit
cubic centimeter based unit
liter based unit
cubic decimeter based unit
hertz based unit
newton based unit
pascal based unit
joule based unit
watt based unit
lux based unit
lumen based unit
katal based unit
radian based unit
steradian based unit
becquerel based unit
curie based unit
gray based unit
rad based unit
roentgen based unit
sievert based unit
Roentgen equivalent man based unit
disintegrations per minute based unit
counts per minute based unit
century based unit
half life based unit
foot candle based unit
watt per square meter based unit
einstein per square meter per second based unit
watt per steradian per square meter based unit
watt per steradian based unit
mass percentage based unit
mass volume percentage based unit
volume percentage based unit
parts per hundred based unit
parts per thousand based unit
parts per million based unit
parts per billion based unit
parts per trillion based unit
parts per quadrillion based unit
gram per milliliter based unit
gram per liter based unit
unit per milliliter based unit
unit per liter based unit
mass per unit volume based unit
enzyme unit based unit
degree based unit
pi based unit
molecule count based unit
purity percentage based unit
confluence percentage based unit
degree Fahrenheit based unit
pH based unit
liter per kilogram based unit
cells per milliliter based unit
katal per cubic meter based unit
katal per liter based unit
gram per deciliter based unit
colony forming unit based unit
plaque forming unit based unit
colony forming unit per milliliter based unit
plaque forming unit per milliliter based unit
disintegrations per second based unit
volt based unit
coulomb based unit
dalton based unit
watt-hour based unit
weber based unit
tesla based unit
volt-hour based unit
bit based unit
byte based unit
chroma sampling unit based unit
dynamic range unit based unit
dots per inch based unit
pixels per inch based unit
pixels per millimeter based unit
base pair based unit
kibibyte based unit
mebibyte based unit
newton per meter based unit
dyne per cm based unit
pascal second based unit
poise based unit
effective dose unit based unit
siemens based unit
watt per meter kelvin based unit
electronvolt based unit
volt per meter based unit
absorbance unit based unit
count per nanomolar second based unit
count per molar second based unit
count per nanomolar based unit
count per molar based unit
dosage unit based unit
relative light unit based unit
relative luminescence unit based unit
relative fluorescence unit based unit
square micrometer based unit
hectare based unit
inch based unit
thou based unit
foot based unit
yard based unit
chain based unit
furlong based unit
mile based unit
league based unit
maritime length unit based unit
fathom based unit
cable based unit
nautical mile based unit
perch based unit
rood based unit
acre based unit
fluid ounce based unit
gill based unit
pint based unit
quart based unit
gallon based unit
grain based unit
drachm based unit
ounce based unit
pound based unit
stone based unit
quarter based unit
hundredweight based unit
ton based unit
slug based unit
teaspoon based unit
gram per square meter based unit
large calorie based unit
gray per minute based unit
A state of being, an external or environmental factor or a treatment observed or administered prior to or concurrent with an investigative procedure such as an assessment of a morphological or physiological state or property in a single individual or sample or in a group of individuals or samples, especially a state, factor or treatment which has the potential to influence the outcome of such an assessment.
experimental condition
A state of being, an external or environmental factor or a treatment observed or administered prior to or concurrent with an investigative procedure such as an assessment of a morphological or physiological state or property in a single individual or sample or in a group of individuals or samples, especially a state, factor or treatment which has the potential to influence the outcome of such an assessment.
Multiple_Dictionaries:http://www.thefreedictionary.com/
PMID:22654893
Obsolete Class
example to be eventually removed
example to be eventually removed
failed exploratory term
The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job
Person:Alan Ruttenberg
failed exploratory term
metadata complete
Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.
metadata complete
organizational term
Term created to ease viewing/sort terms for development purpose, and will not be included in a release
organizational term
ready for release
Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."
ready for release
metadata incomplete
Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.
metadata incomplete
uncurated
Nothing done yet beyond assigning a unique class ID and proposing a preferred term.
uncurated
pending final vetting
All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.
pending final vetting
Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes.
PERSON: Alan Ruttenberg
PERSON: Melanie Courtot
obsolete_core
true
placeholder removed
placeholder removed
terms merged
An editor note should explain what were the merged terms and the reason for the merge.
terms merged
term imported
This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.
term imported
term split
This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.
term split
This is to be used if none of the existing instances cover the reason for obsolescence. An editor note should indicate this new reason.
We expect to be able to mine these new reasons and add instances as required.
obsolete_other
true
universal
Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
Alan Ruttenberg
A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf
universal
defined class
A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
"definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.
Alan Ruttenberg
defined class
named class expression
A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions
Alan Ruttenberg
named class expression
to be replaced with external ontology term
Terms with this status should eventually replaced with a term from another ontology.
Alan Ruttenberg
group:OBI
to be replaced with external ontology term
requires discussion
A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
Alan Ruttenberg
group:OBI
requires discussion
true
true
true
A reference to a place on the Earth, by its name or by its geographical location.
geographic location
meter
kilogram
second
ampere
kelvin
mole
candela
centimeter
millimeter
micrometer
nanometer
angstrom
picometer
gram
milligram
microgram
nanogram
picogram
femtogram
degree Celsius
millisecond
microsecond
picosecond
minute
hour
day
week
month
year
milliampere
microampere
micromole
millimole
nanomole
picomole
femtomole
attomole
molar
millimolar
micromolar
nanomolar
picomolar
molal
millimolal
micromolal
nanomolal
picomolal
femtomolar
normal
mole fraction
meter per second per second
radian per second per second
radian per second
square meter
square centimeter
square millimeter
kilogram per cubic meter
gram per cubic centimeter
candela per square meter
kilogram per square meter
kilogram per mole
gram per mole
cubic meter per mole
cubic centimeter per mole
kilogram meter per second
turns per second
cubic meter per kilogram
meter per second
cubic meter
cubic centimeter
milliliter
liter
cubic decimeter
microliter
nanoliter
picoliter
femtoliter
hertz
newton
pascal
joule
watt
lux
lumen
katal
radian
steradian
becquerel
curie
gray
rad
roentgen
sievert
millisievert
microsievert
Roentgen equivalent man
microgray
milligray
nanogray
nanosievert
millicurie
microcurie
disintegrations per minute
counts per minute
nanosecond
century
half life
foot candle
watt per square meter
einstein per square meter per second
watt per steradian per square meter
microeinstein per square meter per second
watt per steradian
mass percentage
mass volume percentage
volume percentage
parts per hundred
parts per thousand
parts per million
parts per billion
parts per trillion
parts per quadrillion
gram per milliliter
kilogram per liter
gram per liter
milligram per milliliter
unit per milliliter
unit per liter
mass per unit volume
enzyme unit
kilogram per meter
degree
pi
molecule count
purity percentage
confluence percentage
degree Fahrenheit
pH
liter per kilogram
milliliter per kilogram
microliter per kilogram
cells per milliliter
katal per cubic meter
katal per liter
milliliter per cubic meter
milliliter per liter
gram per deciliter
deciliter
colony forming unit
plaque forming unit
colony forming unit per volume
colony forming unit per milliliter
plaque forming unit per milliliter
disintegrations per second
volt
coulomb
dalton
kilodalton
watt-hour
kilowatt-hour
weber
tesla
volt-hour
kilovolt-hour
bit
byte
kilobyte
megabyte
chroma sampling unit
dynamic range unit
dots per inch
micron pixel
pixels per inch
pixels per millimeter
base pair
kibibyte
mebibyte
millivolt
kilovolt
microvolt
nanovolt
picovolt
megavolt
newton per meter
dyne per cm
pascal second
poise
decibel
effective dose unit
siemens
watt per meter kelvin
electronvolt
volt per meter
absorbance unit
microliters per minute
millimetres of mercury
milligram per liter
microgram per milliliter
nanogram per milliliter
milliunits per milliliter
count per nanomolar second
count per molar second
kilogram per hectare
kg/ha
count per nanomolar
count per molar
microgram per liter
milligram per kilogram
milligram per square meter
dosage unit
milligram per kilogram per day
relative light unit
relative luminescence unit
relative fluorescence unit
megaHertz
centiMorgan
centiRay
mega base pair
giga base pair
square micrometer
millisiemens
micromole per litre
micromole per kilogram
millimeters per day
kilometer per hour
milli
hectare
inch
thou
foot
yard
chain
furlong
mile
league
maritime length unit
fathom
cable
nautical mile
perch
rood
acre
fluid ounce
gill
pint
quart
gallon
grain
drachm
ounce
pound
stone
quarter
hundredweight
ton
slug
teaspoon
micromole
gram per square meter
nanogram per microliter
large calorie
micrograms per wheaton bottle
picoampere
centigray
gigaelectronvolt
gigaelectronvolt per nucleon
megaelectronvolt per nucleon
kiloelectronvolt per micron
gray per minute
centigray per minute
milligray per minute
milligray per day
milligray per hour
milligray per second
true
MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z
infer input from direct reg
GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),
e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'
enabling an MF enables its parts
true
GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'
involved in BP
From ligand activity to has_ligand
This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps"
If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.
inferring direct reg edge from input to regulatory subfunction
inferring direct neg reg edge from input to regulatory subfunction
inferring direct positive reg edge from input to regulatory subfunction
From has_ligand to ligand activity
effector input is compound function input
Input of effector is input of its parent MF
if effector directly regulates X, its parent MF directly regulates X
if effector directly positively regulates X, its parent MF directly positively regulates X
if effector directly negatively regulates X, its parent MF directly negatively regulates X
'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).