{ "graphs" : [ { "id" : "http://purl.obolibrary.org/obo/caro.json", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/description", "val" : "The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies." }, { "pred" : "http://purl.org/dc/elements/1.1/title", "val" : "Common Anatomy Reference Ontology" }, { "pred" : "http://purl.org/dc/terms/license", "val" : "https://creativecommons.org/licenses/by/4.0/" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Based on CARO 1.0, with modifications and additions by David Osumi-Sutherland, Chris Mungall, Ramona Walls and Melissa Haendel." }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", "val" : "2023-03-15" } ], "version" : "http://purl.obolibrary.org/obo/caro/releases/2023-03-15/caro.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000001", "lbl" : "entity", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "entity" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Entity" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Julius Caesar" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Verdi’s Requiem" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the Second World War" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "your body mass index" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000002", "lbl" : "continuant", "type" : "CLASS", "meta" : { "definition" : { "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "continuant" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Continuant" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000003", "lbl" : "occurrent", "type" : "CLASS", "meta" : { "definition" : { "val" : "An entity that has temporal parts and that happens, unfolds or develops through time." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "occurrent" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Occurrent" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000004", "lbl" : "independent continuant", "type" : "CLASS", "meta" : { "definition" : { "val" : "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "ic" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "IndependentContinuant" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a chair" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a heart" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a leg" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a molecule" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a spatial region" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an atom" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an orchestra." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an organism" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the bottom right portion of a human torso" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the interior of your mouth" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000006", "lbl" : "spatial region", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "s-region" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "SpatialRegion" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: Spatial regions do not participate in processes." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000009", "lbl" : "two-dimensional spatial region", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "2d-s-region" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "TwoDimensionalSpatialRegion" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an infinitely thin plane in space." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the surface of a sphere-shaped part of space" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000015", "lbl" : "process", "type" : "CLASS", "meta" : { "definition" : { "val" : "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "process" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Process" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a process of cell-division, \\ a beating of the heart" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a process of meiosis" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a process of sleeping" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the course of a disease" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the flight of a bird" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the life of an organism" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "your process of aging." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000016", "lbl" : "disposition", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "disposition" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Disposition" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an atom of element X has the disposition to decay to an atom of element Y" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "certain people have a predisposition to colon cancer" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "children are innately disposed to categorize objects in certain ways." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the cell wall is disposed to filter chemicals in endocytosis and exocytosis" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000017", "lbl" : "realizable entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "realizable" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "RealizableEntity" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the disposition of this piece of metal to conduct electricity." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the disposition of your blood to coagulate" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the function of your reproductive organs" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the role of being a doctor" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the role of this boundary to delineate where Utah and Colorado meet" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0001-8815-0078" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000018", "lbl" : "zero-dimensional spatial region", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "0d-s-region" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "ZeroDimensionalSpatialRegion" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000019", "lbl" : "quality", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Quality" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the ambient temperature of this portion of air" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the color of a tomato" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the length of the circumference of your waist" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the mass of this piece of gold." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the shape of your nose" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the shape of your nostril" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000020", "lbl" : "specifically dependent continuant", "type" : "CLASS", "meta" : { "definition" : { "val" : "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "sdc" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "SpecificallyDependentContinuant" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "of one-sided specifically dependent continuants: the mass of this tomato" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the disposition of this fish to decay" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the function of this heart: to pump blood" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the mutual dependence of proton donors and acceptors in chemical reactions [79" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the pink color of a medium rare piece of grilled filet mignon at its center" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the role of being a doctor" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the shape of this hole." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the smell of this portion of mozzarella" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000023", "lbl" : "role", "type" : "CLASS", "meta" : { "definition" : { "val" : "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "role" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Role" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the priest role" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the role of a boundary to demarcate two neighboring administrative territories" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the role of a building in serving as a military target" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the role of a stone in marking a property boundary" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the role of subject in a clinical trial" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the student role" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000026", "lbl" : "one-dimensional spatial region", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "1d-s-region" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "OneDimensionalSpatialRegion" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an edge of a cube-shaped portion of space." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000029", "lbl" : "site", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "site" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Site" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Manhattan Canyon)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a hole in the interior of a portion of cheese" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a rabbit hole" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an air traffic control region defined in the airspace above an airport" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the Grand Canyon" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the Piazza San Marco" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the cockpit of an aircraft" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the hold of a ship" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the interior of a kangaroo pouch" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the interior of the trunk of your car" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the interior of your bedroom" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the interior of your office" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the interior of your refrigerator" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the lumen of your gut" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "your left nostril (a fiat part – the opening – of your left nasal cavity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000034", "lbl" : "function", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "function" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "Function" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the function of a hammer to drive in nails" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the function of a heart pacemaker to regulate the beating of a heart through electricity" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the function of amylase in saliva to break down starch into sugar" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000040", "lbl" : "material entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "material" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "MaterialEntity" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a flame" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a forest fire" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a human being" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a hurricane" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a photon" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a puff of smoke" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a sea wave" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a tornado" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an aggregate of human beings." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an energy wave" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an epidemic" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the undetached arm of a human being" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000601", "val" : "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000602", "val" : "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] " }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "lbl" : "part_of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a core relation that holds between a part and its whole" }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "xrefs" : [ { "val" : "BFO:0000050" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "is part of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my brain is part of my body (continuant parthood, two material entities)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this day is part of this year (occurrent parthood)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "part_of" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "part_of" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000051", "lbl" : "has_part", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a core relation that holds between a whole and its part" }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "xrefs" : [ { "val" : "BFO:0000051" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "has part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my body has part my brain (continuant parthood, two material entities)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this year has part this day (occurrent parthood)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_part" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "has_part" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000062", "lbl" : "preceded by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "xrefs" : [ { "val" : "BFO:0000062" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "preceded by" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is preceded by" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "preceded_by" }, { "pred" : "http://purl.org/dc/elements/1.1/source", "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "preceded_by" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000063", "lbl" : "precedes", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "xrefs" : [ { "val" : "BFO:0000063" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "precedes" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "precedes" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000066", "lbl" : "occurs in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" }, "comments" : [ "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" ], "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "xrefs" : [ { "val" : "BFO:0000066" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "occurs in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "occurs_in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "unfolds in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "unfolds_in" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "gene_ontology" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "occurs_in" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000067", "lbl" : "contains process", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" }, "comments" : [ "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" ], "xrefs" : [ { "val" : "BFO:0000067" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "site of" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "contains_process" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000141", "lbl" : "immaterial entity", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/BFO_0000179", "val" : "immaterial" }, { "pred" : "http://purl.obolibrary.org/obo/BFO_0000180", "val" : "ImmaterialEntity" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000000", "lbl" : "anatomical entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.", "xrefs" : [ "CAROC:Brownsville2014" ] }, "comments" : [ "Following BFO, material anatomical entities may have immaterial parts (the lumen of your stomach is part of your stomach). The granularity limit follows the limits set by the Gene Ontology on the granularity limit for GO:cellular_component. Note that substances produced by an organism (sweat, feaces, urine) do not need to be part of an organism to qualify as an anatomical structure." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000003", "lbl" : "connected anatomical structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." }, "comments" : [ "Note that the definition does not say 'generated exclusively by the co-ordinated expression of the organism's own genome', so this is still valid for cases where normal morphogenesis requires the actions of a facultative symbiont, or some looser dependency such as the a requirement for the presence of gut flora for normal gut development." ], "subsets" : [ "http://purl.obolibrary.org/obo/caro#core" ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000004", "lbl" : "organism substance", "type" : "CLASS", "meta" : { "definition" : { "val" : "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism's own genome." }, "comments" : [ "Note - CARO explicitly declares organisms substances to be part of (some) organism." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of organism substance" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Examples include feces, urine, blood, blood plasma, lymph, hemolymph, cerbro-spinal fluid. This class does not encompass anatomical entities with inherent 3D structure such as dentine and arthropod cuticle." } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000005", "lbl" : "anatomical space", "type" : "CLASS", "meta" : { "definition" : { "val" : "An Immaterial anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes and that is bounded by an anatomical surface." }, "comments" : [ "Original definition: \"Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures.\" The last clause. \"contains one or more organism substances or anatomical structures\" was dropped from the definition because it was an unnecessary restriction." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000006", "lbl" : "material anatomical entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical entity that has mass." }, "subsets" : [ "http://purl.obolibrary.org/obo/caro#core" ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000007", "lbl" : "immaterial anatomical entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical entity that has no mass." }, "subsets" : [ "http://purl.obolibrary.org/obo/caro#core" ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000008", "lbl" : "anatomical line", "type" : "CLASS", "meta" : { "definition" : { "val" : "A one dimensional, immaterial anatomical entity." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A line between two points where these are typically used to measure some aspect of morphology, such as the distance between the eyes or the length of a leg. " } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000009", "lbl" : "anatomical point", "type" : "CLASS", "meta" : { "definition" : { "val" : "Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "The tip of the nose or other material anatomical entity, or the end of an anatomical line. " } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000010", "lbl" : "anatomical boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." }, "comments" : [ "Except in the case of abstracted fiat boundaries such as the midline plane of an organism, all 2D anatomical entities have a 3 dimensional projection. For example, the surface of the shell of a muscle has a distinct shape that projects into the third dimension. Note that boundaries are 2D structures. They have no thickness - and so can not be sites of gene expression or gene product localisation. For this, use boundary region terms." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000011", "lbl" : "connected anatomical system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000012", "lbl" : "multicellular organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell." }, "comments" : [ "MH: Can't define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history. \n\nMH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000013", "lbl" : "cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." }, "comments" : [ "deprecate and replace with CL or GO term?" ], "xrefs" : [ { "val" : "CL:0000000" }, { "val" : "GO:0005623" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000014", "lbl" : "cell part", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that is part of a cell and that has a granularity level equal to that of a protein complex or higher." }, "comments" : [ "This is declared equivalent with GO:0044464. The definition should be co-ordinated with GO. We could obsolete the CARO class and just use the GO class." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "cell component" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000019", "lbl" : "compound organ component", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multi-tissue structure that is part of a compound organ." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000021", "lbl" : "simple organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ that consists of a single multi-tissue structure." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000024", "lbl" : "compound organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ consisting of multiple, distinct multi-tissue structures." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000027", "lbl" : "male organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Gonochoristic organism that can produce male gametes." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000028", "lbl" : "female organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Gonochoristic organism that can produce female gametes." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000029", "lbl" : "hermaphroditic organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multi-cellular organism that can produce both male and female gametes." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "dioecious organism" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000030", "lbl" : "asexual multi-cellular organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multi-cellular organism that does not produce gametes." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000032", "lbl" : "organism subdivision", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument." }, "subsets" : [ "http://purl.obolibrary.org/obo/caro#core" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Old definition: Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000040", "lbl" : "acellular anatomical structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that has no cells or cell parts as a part." }, "comments" : [ "Example. Insect cuticle, eggshell, hair." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000041", "lbl" : "anatomical cluster", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical group that has its parts adjacent to one another.", "xrefs" : [ "https://orcid.org/0000-0001-9114-8737", "FMA:49443" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/caro#plus" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/CARO_0020001" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000042", "lbl" : "extraembryonic structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis." }, "comments" : [ "MH: define as not part of embryo, or will not develop into embryo? MH: changed def to exclude cells so this class could be included in gross anatomical part. DOS: Changed to something that I think works for both vertebrates and invertebrates and that keeps the restriction to multicellular structures. Old def: \"Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue that will not contribute to the embryo.\". One remaining question - perhaps zygote is too restrictive given that some organisms have parthenogenesis e.g. aphids?\n" ], "subsets" : [ "http://purl.obolibrary.org/obo/caro#plus" ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000043", "lbl" : "tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "relabel 'tissue'?" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "portion of tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000045", "lbl" : "sequential hermaphroditic organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "consecutive hermaphroditic organism" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000046", "lbl" : "synchronous hermaphroditic organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hermaphroditic organism that produces both male and female gametes at the same time." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "serially hermaphroditic organism" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000048", "lbl" : "gonochoristic organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multi-cellular organism that has male and female sexes." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "monoecious organism" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000049", "lbl" : "protandrous hermaphroditic organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sequential hermaphroditic organism that produces\\ngametes first of the male sex, and then later of the\\nfemale sex." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000050", "lbl" : "protogynous hermaphroditic organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sequential hermaphroditic organism that produces\\ngametes first of the female sex, and then later of the\\nmale sex." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000054", "lbl" : "anatomical group", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue.\n", "xrefs" : [ "https://orcid.org/0000-0001-9114-8737" ] }, "comments" : [ "Obsoleted because the definition is too opaque. Also because this class was a subclass of 'anatomical structure' (CARO_0000003), but a similarly named class in the refactored caro (CARO_0020000) is a sibling of 'anatomical structure'." ], "subsets" : [ "http://purl.obolibrary.org/obo/caro#core" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "http://purl.obolibrary.org/obo/CARO_0020000" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000055", "lbl" : "multi-tissue structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000062", "lbl" : "cell space", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical space that is part of a cell." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000063", "lbl" : "portion of cell substance", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of organism substance located within a cell." }, "comments" : [ "Deprecate this as better to leave it up to GO to define?" ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000064", "lbl" : "unicellular organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organism that consists of a single cell for all of its life-cycle." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "single-cell organism" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000065", "lbl" : "basal lamina", "type" : "CLASS", "meta" : { "definition" : { "val" : "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." }, "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000066", "lbl" : "epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000067", "lbl" : "simple cuboidal epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Unilaminar epithelium that consists of a single layer of cuboidal cells." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000068", "lbl" : "simple columnar epithlium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Unilaminar epithelium that consists of a single layer of columnar cells." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000069", "lbl" : "multilaminar epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium that consists of more than one layer of epithelial cells." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000070", "lbl" : "simple squamous epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Unilaminar epithelium that consists of a single layer of squamous cells." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000071", "lbl" : "atypical epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium that consists of epithelial cells not arranged in one ore more layers." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000072", "lbl" : "cavitated compound organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "Compound organ that contains one or more macroscopic anatomical spaces." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000073", "lbl" : "unilaminar epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium that consists of a single layer of epithelial cells." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000074", "lbl" : "solid compound organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "Compound organ that does not contain macroscopic anatomical spaces." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000077", "lbl" : "epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity." }, "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000081", "lbl" : "circulating fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluid that is circulated around a multicellular organism carrying nutrients and carrying away waste products." }, "comments" : [ "Examples: blood, lymph, hemolymph" ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000133", "lbl" : "paired appendage", "type" : "CLASS", "meta" : { "definition" : { "val" : "An appendage that is one of a bilateral pair." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000134", "lbl" : "unpaired appendage", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001000", "lbl" : "multi-cell-part structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." }, "comments" : [ "Examples: a bundle of neuron projections in the brain; a region neuropil in an arthropod central nervous system; a region of cortex (preikaryal rind) in an arthropod brain." ], "subsets" : [ "http://purl.obolibrary.org/obo/caro#core" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "multi-cell-component structure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001001", "lbl" : "neuron projection bundle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "nerve fiber bundle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001002", "lbl" : "anatomical surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A two dimensional anatomical structure that is the boundary between an anatomical structure and an anatomical substance, an anatomical space or the organism's environment. Examples include the surface of your skin, the surface of the lining of your gut; the surface of the endothelium of you aorta that is in contact with blood.\n" }, "comments" : [ "Old definition: \"Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures.\" Note, in the new definition, the space referred to is not necessarily an anatomical space. It may be the outside of an organism." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001003", "lbl" : "fiat anatomical boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "A two dimensional anatomical entity that does not correspond to any physical discontinuity." }, "comments" : [ "Fiat anatomical boundaries are generally defined using external physical criteria as landmarks. One might argue that all boundaries are actually fiat in the sense that there must be some fiat element at a fine enough scale of granularity. This ontology choses to ignore this issue as below the level of granularity relevant to anatomy. (DOS121102)" ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001004", "lbl" : "bona-fide anatomical boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical boundary that corresponds to some physical discontinuity." }, "comments" : [ "One might argue that all boundaries are actually fiat in the sense that there must be some fiat element at a fine enough scale of granularity. This ontology choses to ignore this issue as below the level of granularity relevant to anatomy. (DOS121102)" ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001005", "lbl" : "gene expression boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "A two dimensional anatomical entity that is the boundary of a domain of expression of some gene." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001006", "lbl" : "developmental compartment boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "A two dimensional anatomical entity that is not a morphological boundary and that cells do not cross during development." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001007", "lbl" : "morphological boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "A two dimensional anatomical structure that corresponds to some structural discontinuity." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001008", "lbl" : "gross anatomical part", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells. " }, "subsets" : [ "http://purl.obolibrary.org/obo/caro#plus" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0001-9114-8737" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", "val" : "10.7.2011" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001009", "lbl" : "obsolete anatomical chamber", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that surrounds an immaterial anatomical entity." }, "comments" : [ "See CARO tracker #6, but essentially Chamber has connotations of space, rather than wall: see http://en.wiktionary.org/wiki/chamber\n\nThis term is extremely abstract as a genus - it specifies no granularity at all. It could refer to a chamber in a protein complex in a membrane as easily as some big multi-tissue structure like a segment of gut." ], "subsets" : [ "http://purl.obolibrary.org/obo/caro#plus" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0001-9114-8737" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", "val" : "10.10.2011" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001010", "lbl" : "organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Material anatomical entity that is a member of an individual species or is a viral or viroid particle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "organism or virus or viroid" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Melissa Haendel" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", "val" : "9/18/11" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001011", "lbl" : "anatomical boundary group", "meta" : { "definition" : { "val" : "A group of two or more anatomical boundaries that are not contiguous with each other." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001013", "lbl" : "anatomical plane", "type" : "CLASS", "meta" : { "comments" : [ "All anatomical planes are fiat anatomical boundaries - no morphological boundary could ever be a perfect plane." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001500", "lbl" : "neuron projection bundle segment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fiber-shaped subdivision of a neuron projection along its long axis." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0001501", "lbl" : "neuron projection bundle subsegment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of a neuron projection along its long axis that is as long as it is wide (and so does not qualify as fiber-shaped)." }, "comments" : [ "This term was added in order to define fasciculation relations. It seems unlikely that it will be used directly in curation." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002000", "lbl" : "epidermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium of the integumentary system." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002001", "lbl" : "integumentary system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Connected anatomical system that forms a barrier between an animal and its environment - generally consisting of an epidermis, which may be covered by some acellular structure." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002002", "lbl" : "aligned anatomical group", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical group whose members are arranged in a line." }, "comments" : [ "Examples include the rows of sense organs commonly found in the cuticles of insects." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002003", "lbl" : "clustered anatomical group", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical group whose parts are close together, forming a cluster.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "comments" : [ "Not to be confused with anatomical cluster, in the FMA sense. FMA anatomical structures are connected structures made up of heterologous parts. For example, joints are anatomical clusters in the FMA. The FMA definition on anatomical cluster, and the CARO1 definition that was based on it, are defined largely by exclusion." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002004", "lbl" : "segment body", "type" : "CLASS", "meta" : { "definition" : { "val" : "One of a set of semi-repetitive organism subdivisions serially arranged along the anterior-posterior axis of an organism and excluding appendages if present." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002005", "lbl" : "appendage subdivision", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of an appendage along its proximal-distal axis, consisting consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument." } } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002006", "lbl" : "obsolete body cavity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A major anatomical space of an organism in which major organs are located." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Ceolom, cranial cavity, mammalian thoracic and abdominal body cavities, arthropod hemoceol." } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002100", "lbl" : "anatomical system", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure consisting of multiple cells, organs, tissues, distributed throught an organism, that act together to perform some physiological function." }, "comments" : [ "Examples include connected systems such as the circulatory system - whose elements function together to perform the function or blood circulation - and disconected systems such as the immune system." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0002101", "lbl" : "disconnected anatomical system", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical system consisting of multiple disconnected parts.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "comments" : [ "Examples include the immune system and the endocrine system." ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0010000", "lbl" : "multicellular anatomical structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that has more than one cell as a part." }, "subsets" : [ "http://purl.obolibrary.org/obo/caro#core" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "djs93" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", "val" : "Sun Feb 27 10:53:00 GMT 2011" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0010001", "lbl" : "cell cluster organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "A small cluster of cells of various types which form a discrete structure, largely delimited by a morphological boundary and whose components work together to make the whole structure capable of a specific function." }, "comments" : [ "Examples include arthropod sensilla." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "djs93" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", "val" : "Sun Feb 27 11:00:35 GMT 2011" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0010002", "lbl" : "compound cell cluster organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure consisting of multiple cell cluster organs, largely delimited by a morphological boundary and whose components work together to make the whole structure capable of a specific function." }, "comments" : [ "Examples: compound eye; Johnston's organ." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "djs93" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", "val" : "Sun Feb 27 11:13:17 GMT 2011" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0010003", "lbl" : "appendage", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organism subdivision that protrudes from the body." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "djs93" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", "val" : "Fri Mar 04 07:09:17 GMT 2011" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CARO_0010004", "lbl" : "cellular organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "An individual member of a clade of cellular organisms." }, "comments" : [ "A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. For example, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms. 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This forms during stage 8 when anterior endoderm cells, which have invaginated at the anterior end of the ventral furrow, divide and undergo an epithelial-to-mesenchymal transition. During stage 9, its cells divide a second time. During stage 10, the primordium attaches to the internal end of the stomodeum and spreads posteriorly with the stomodeal invagination, splitting into two lobes extending on either side of the yolk sac. A separate group of cells fuse with this primordium during stage 11. These cells delaminate from the stomodeum, becoming mesenchymal and mingling with the existing cells of the primordium. Fate mapping suggests that these cells will form the anterior-most part of the midgut, including the gastric caeca (Technau and Campos-Ortega, 1985). Adult midgut progenitors separate from the primordium during late stage 11 and stage 12. The remaining cells reorganize to become epithelial plates which then begin to fuse with the posterior midgut primordium during stage 12, forming the fused midgut primordium.", "xrefs" : [ "FlyBase:FBrf0043522", "FlyBase:FBrf0089570" ] }, "comments" : [ "This primordium may be temporally subdivided into the inclusive anterior midgut primordium, including adult midgut progenitors and the anterior midgut primordium proper, which contains only progenitors of the embryonic/larval midgut. However, the primordium proper exists only briefly during stage 12 and so we have chosen not to represent it in this ontology. Please use 'anterior midgut primordium' for both cases. Note, there is some controversy surrounding the account of anterior midgut development given in this definition. 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In some animals one of these is absent." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ISG2", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "L-ISNG", "xrefs" : [ "PMID:21438012" ] }, { "pred" : "hasRelatedSynonym", "val" : "intersegmental glial cell 2", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001307", "meta" : { "definition" : { "val" : "Glial cell associated with the segmental nerve root.", "xrefs" : [ "PMID:21438012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "SNG", "xrefs" : [ "PMID:21438012" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001308", "meta" : { "definition" : { "val" : "Anterior-most of the two medial segment nerve root glial cells.", "xrefs" : [ "PMID:21438012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "M-SNG1", "xrefs" : [ "PMID:21438012" ] }, { "pred" : "hasRelatedSynonym", "val" : "SG1" }, { "pred" : "hasRelatedSynonym", "val" : "SNG1", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "segmental glial cell 1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001309", "meta" : { "definition" : { "val" : "Posterior-most of the two medial segment nerve root glial cells.", "xrefs" : [ "PMID:21438012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "M-SNG2", "xrefs" : [ "PMID:21438012" ] }, { "pred" : "hasRelatedSynonym", "val" : "SG2" }, { "pred" : "hasRelatedSynonym", "val" : "SNG2", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "segmental glial cell 2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001310", "meta" : { "definition" : { "val" : "Segmental nerve root glial cell that lies at the point where the intersegmental and segmental nerve roots meet to form a single peripheral nerve.", "xrefs" : [ "PMID:21438012" ] }, "comments" : [ "The lateral segmental nerve root glial cell and the lateral intersegmental nerve root glial cell lie in close proximity. 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There are 7-8 interface glial cells per hemineuromere in the embryo and early larvae.", "xrefs" : [ "PMID:21438012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "IG" }, { "pred" : "hasRelatedSynonym", "val" : "LG" }, { "pred" : "hasRelatedSynonym", "val" : "longitudinal glial cell" }, { "pred" : "hasRelatedSynonym", "val" : "neuropil cover glia", "xrefs" : [ "doi:10.1007/BF00323575" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001312", "meta" : { "definition" : { "val" : "Interface glial cell located on the dorsal interface of the hemineuromere. There are up to five of these cells per hemineuromere, three or four lying in the medial-most area of the dorsal interface which separate the neuropil from the pair of rows of large neural cell bodies. Another one or two dorsal interface glia lie at a more lateral region of the dorsal interface, which is beneath the thinnest part of the dorsal cortex.", "xrefs" : [ "PMID:21438012" ] }, "comments" : [ "The positions of the interface glial cells vary considerably in the first instar larval ventral nerve cord." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "D-IG" }, { "pred" : "hasRelatedSynonym", "val" : "dorsal IG", "xrefs" : [ "PMID:21438012" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001313", "meta" : { "definition" : { "val" : "Interface glial cell located in the lateral interface of the ventral nerve cord. There are 2 lateral interface glial cells per hemineuromere forming two parallel flat processes dorso-ventrally along the lateral interface.", "xrefs" : [ "PMID:21438012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L-IG" }, { "pred" : "hasRelatedSynonym", "val" : "lateral IG", "xrefs" : [ "PMID:21438012" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001314", "meta" : { "definition" : { "val" : "Interface glial cell located at the ventral-most region of the ventral nerve cord interface near the center of the segment lateral to the ventral midline glial cells. The ventral interface glial cell sends processes both laterally and medially. The medial process runs towards the midline glial cells, but apparently does not contact them. It runs along the inner surface of the neuropil between the anterior and posterior commissures and seems to contact the medial dorsal intersegmental glial cells.", "xrefs" : [ "PMID:21438012" ] }, "comments" : [ "In some samples there are two ventral interface glial cells per hemisegment, but generally there is only one cell." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "V-IG" }, { "pred" : "hasRelatedSynonym", "val" : "ventral IG", "xrefs" : [ "PMID:21438012" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001315", "meta" : { "definition" : { "val" : "Neuropil associated CNS glial cell located along the midline in the ventral nerve cord. There are three or four midline glia per neuromere, arranged above (dorsal to) and below (ventral to) the neuropil. Cytoplasmic extensions are restricted to the midline, covering the medial part of the commissure neuropil. Fine extensions are also observed within the neuropil.", "xrefs" : [ "PMID:21438012" ] }, "comments" : [ "Ito et al. (1995) states that there are generally three or four midline glial cells per neuromere, but occasionally there are more than four. The thoracic neuromeres are more likely than the abdominal neuromeres to have more. Midline glia are repo (FBgn0011701) negative and are eliminated by apoptosis during the pupal stage." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "midline glia" }, { "pred" : "hasExactSynonym", "val" : "ventral midline glia" }, { "pred" : "hasRelatedSynonym", "val" : "MG" }, { "pred" : "hasRelatedSynonym", "val" : "MGA, MGM, MGP" }, { "pred" : "hasRelatedSynonym", "val" : "median glial cell" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00005567" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001316", "meta" : { "definition" : { "val" : "Midline glial cell located dorsal to the ventral nerve cord neuropil.", "xrefs" : [ "PMID:21438012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dorsal midline glial cell" }, { "pred" : "hasRelatedSynonym", "val" : "D-MG" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001317", "meta" : { "definition" : { "val" : "Midline glial cell located ventral to the ventral nerve cord neuropil.", "xrefs" : [ "PMID:21438012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ventral midline glial cell" }, { "pred" : "hasRelatedSynonym", "val" : "V-MG" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001318", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "SDBP" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001319", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001320", "meta" : { "definition" : { "val" : "Glial cell that is part of the peripheral nervous system.", "xrefs" : [ "FBC:SPR" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "PNS glial cell" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001321", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "EG", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001322", "meta" : { "comments" : [ "This term comes from Klambt and Goodman, 1991 (FBrf0054242) who distinguished anterior, medial1 and medial2 exit glia based on position. But von Hilchen et al, 2008 (FBrf0204826) have shown that, when classified by lineage and expression, the relative position of these three cells is variable. We have therefore obsoleted this term. As it is not possible to specify a 1:1 mapping between the nomenclature of Klambt and Goodman and that of von Hilchen, we suggest using the general term 'PNS exit glial cell'." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "EGM1", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00001321" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001323", "meta" : { "comments" : [ "This term comes from Klambt and Goodman, 1991 (FBrf0054242) who distinguished anterior, medial1 and medial2 exit glia based on position. But von Hilchen et al, 2008 (FBrf0204826) have shown that, when classified by lineage and expression, the relative position of these three cells is variable. We have therefore obsoleted this term. As it is not possible to specify a 1:1 mapping between the nomenclature of Klambt and Goodman and that of von Hilchen, we suggest using the general term 'PNS exit glial cell'." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "EGM2", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00001321" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001324", "meta" : { "comments" : [ "This term comes from Klambt and Goodman, 1991 (FBrf0054242) who distinguished anterior, medial1 and medial2 exit glia based on position. But von Hilchen et al, 2008 (FBrf0204826) have shown that, when classified by lineage and expression, the relative position of these three cells is variable. We have therefore obsoleted this term. As it is not possible to specify a 1:1 mapping between the nomenclature of Klambt and Goodman and that of von Hilchen, we suggest using the general term 'PNS exit glial cell'." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "EGA", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00001321" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001325", "meta" : { "definition" : { "val" : "Exit glial cell associated with the root of SNd", "xrefs" : [ "FlyBase:FBrf0054242" ] }, "comments" : [ "Note that this exit glial cell was not identified by von Hilchen et al, 2008 (FBrf0204826) in their attempt at a comprehensive catalogue of peripheral glia." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "EGP" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001326", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FBC:ma" ] }, "comments" : [ "Said to be mesodermal in origin. Not clear where this term comes from. Probably maps to embryonic peripheral glial cell 12 (FBbt:00110115) - although not clear in that case why it would be referred to as an exit glial cell." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001327", "meta" : { "definition" : { "val" : "Glial cell in a nerve that is directly associated with its neurites and is not part of subperineurial layer that wraps the nerve. Early in development, cells of this type are involved in axon pathfinding. Later, cells of this type ensheath neurites and some are located at branching points.", "xrefs" : [ "FlyBase:FBrf0049575", "FlyBase:FBrf0054242", "FlyBase:FBrf0064795", "FlyBase:FBrf0138519", "FlyBase:FBrf0139836", "FlyBase:FBrf0204826" ] }, "comments" : [ "Disambiguation: Some authors consider 'exit glia' to be a distinct class (e.g. see Sepp et al., 2001). However, we follow a more recent system (von Hilchen ,2008) that considers exit glia cells to be a type of peripheral glia. Their nomenclature (ePG1-12) reflects this." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "exit glia", "xrefs" : [ "FlyBase:FBrf0139836" ] }, { "pred" : "hasRelatedSynonym", "val" : "PG" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001328", "meta" : { "definition" : { "val" : "An embryonic peripheral glial cell located distally to the transition zone between the CNS and the PNS on segmental nerve, near the point where it splits from the intersegmental nerve (ISN). It develops from the same sensory organ precursor cell located in the ventral neuroectoderm as embryonic peripheral glial cell 5 (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049575", "FlyBase:FBrf0054242", "FlyBase:FBrf0064795", "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG4 is very stable: it is found at its position 96% of the time. Rarely, it can be found at the position of ePG5 (4%). This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG4", "xrefs" : [ "FlyBase:FBrf0204826" ] }, { "pred" : "hasExactSynonym", "val" : "peripheral glial cell 1", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasExactSynonym", "val" : "peripheral glial cell 1 of SN", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "PG1", "xrefs" : [ "FlyBase:FBrf0054242", "FlyBase:FBrf0064795" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001329", "meta" : { "definition" : { "val" : "A peripheral glial cell associated with the intersegmental nerve (ISN) that is located between PG1 (ePG4) and PG3 (ePG10). There are 4 of these (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049575", "FlyBase:FBrf0054242", "FlyBase:FBrf0064795", "FlyBase:FBrf0204826" ] }, "comments" : [ "This term revers to PG2 from the old nomenclature of Klambt and Goodman, 1991, which has been largely supersed by the more fine grained nomenclature of von Hilchen et al., 2008 (FBrf0204826). The term has been kept as a grouping term for ePG6-9 as it has been used in curation a number of times, but the name has been changed to avoid confusion with ePG2 from the new nomenclature, which is a completely different cell." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PG2", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasExactSynonym", "val" : "peripheral glial cell 2", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasExactSynonym", "val" : "peripheral glial cell 2 of ISN", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001330", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the intersegmental nerve (ISN), located at its distal end, laterally to ePG9 (von Hilchen et al., 2008). It develops from a sensory organ precursor cell (Nelson and Laughon, 1993; von Hilchen et al., 2008)).", "xrefs" : [ "FlyBase:FBrf0050677", "FlyBase:FBrf0054242", "FlyBase:FBrf0059322", "FlyBase:FBrf0064795", "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG10 is fixed: it is found at its position 100% of the time. This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008). Mapping to from the terminology of Klambt and Goodman, 1991, is also from von Hilchen et al., 2008." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PG3", "xrefs" : [ "FlyBase:FBrf0054242", "FlyBase:FBrf0064795" ] }, { "pred" : "hasExactSynonym", "val" : "ePG10", "xrefs" : [ "FlyBase:FBrf0204826" ] }, { "pred" : "hasExactSynonym", "val" : "peripheral glial cell 3 of ISN", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001331", "meta" : { "definition" : { "val" : "Peripheral glial cell associated with the SNc (Goodman and Doe, 1993). It is located more distally than peripheral glial cell 1.", "xrefs" : [ "FlyBase:FBrf0054242", "FlyBase:FBrf0064795" ] }, "comments" : [ "Note that this exit glial cell was not identified by von Hilchen et al, 2008 (FBrf0204826) in their attempt at a comprehensive catalogue of peripheral glia." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "peripheral glial cell 4" }, { "pred" : "hasRelatedSynonym", "val" : "PG4" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001332", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0055900" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001333", "meta" : { "definition" : { "val" : "A neuroblast of the brain, lying below the peripheral neurectoderm. They are usually greater than 10 micrometers in diameter and express stem-cell specific markers. Individual neuroblasts are named according to their position relative to major morphological features (cephalic furrow, invaginating foregut, dorsal and ventral midline, their relative position with respect to each other, their time of segregation and their expression of markers). 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It produces the putative motorneuron of the transverse nerve (FBbt:00001996) and a variety of intersegmental and local interneurons.", "xrefs" : [ "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB4-1.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/41 description.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001398", "meta" : { "definition" : { "val" : "Neuroblast NB6-1 generates intersegmental and ~10-16 interneurons in every segment, but only generates a motorneuron in segment T1 (http://www.neuro.uoregon.edu/doelab/lineages/NB6-1.html).", "xrefs" : [ "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB6-1.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/61 description.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001399", "meta" : { "definition" : { "val" : "Neuroblast NB6-4 generates glia in abdominal segments as well as interneurons in thoracic segments.", "xrefs" : [ "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB6-4.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/64 description.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001400", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "NB6-4T" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001401", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "NB6-4A" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001402", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001403", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001404", "meta" : { "definition" : { "val" : "Neuroblast located at the embryonic segment border close to the tracheal pit and produces both neurons and glial cells (Schmidt et al., 1997).", "xrefs" : [ "FlyBase:FBrf0098344" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001405", "meta" : { "definition" : { "val" : "Unlike the other neuroblasts, the glial precursor (GP) does not divide to make GMCs or neurons. Dividing roughly symmetrically during embryonic stage 11, it produces two cells that eventually divide to generate six longitudinal glia.", "xrefs" : [ "http://www.neuro.uoregon.edu/doelab/neuro/gp.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "GP", "xrefs" : [ "http://www.neuro.uoregon.edu/doelab/neuro/gp.html" ] }, { "pred" : "hasExactSynonym", "val" : "Glioblast", "xrefs" : [ "http://www.neuro.uoregon.edu/doelab/neuro/gp.html" ] }, { "pred" : "hasExactSynonym", "val" : "glial precursor", "xrefs" : [ "http://www.neuro.uoregon.edu/doelab/neuro/gp.html" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001406", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001407", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001408", "meta" : { "definition" : { "val" : "Stage 3 neuroblast that expresses achaete (FBgn0000022).", "xrefs" : [ "http://www.neuro.uoregon.edu/doelab/neuro/x.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001409", "meta" : { "definition" : { "val" : "A neuroblast delaminating in the fourth wave of neuroblast delamination from the ventral neurectoderm. This wave begins during embryonic stage 11, ending in late stage 11. The S4 neuroblasts delaminate into columns in between the existing intermediate and lateral columns of neuroblasts (Doe, 1992).", "xrefs" : [ "FlyBase:FBrf0055900", "FlyBase:FBrf0076117" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "S4 neuroblast" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001410", "meta" : { "definition" : { "val" : "Neuroblast NB2-1 delaminates at S4 and generates approximately 9-15 local interneurons by embryonic stage 17. The fibers from these cells cross the midline via a single projection in a posterior fascicle of the anterior commissure (http://www.neuro.uoregon.edu/doelab/lineages/texts/21%20description.html).", "xrefs" : [ "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB2-1.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/21 description.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001411", "meta" : { "definition" : { "val" : "Neuroblast NB2-4 delaminates at S4 and generates a contralaterally projecting motorneuron and approximately 8 local interneurons.", "xrefs" : [ "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB2-4.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/24%20description.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001412", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001413", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001414", "meta" : { "definition" : { "val" : "Neuroblast NB3-4 delaminates at S5. It produces a single motorneuron located on the posterior boundary of the clone and projects into the anterior root of the ISN by embryonic stage 15. Along with several local interneurons, it also produces at least 2 intersegmental interneurons by embryonic stage 17, one extending ipsilaterally, the other crossing the anterior commissure before extending anteriorly (http://www.neuro.uoregon.edu/doelab/lineages/texts/34description.html).", "xrefs" : [ "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB3-4and4-4.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/34description.html" ] }, "comments" : [ "Schmid et al., (1999), and the associated web page (http://www.neuro.uoregon.edu/doelab/lineages/NB3-4and4-4.html), state that because neuroblasts NB3-4 and NB4-4 express a similar array of molecular markers, delaminate at similar times, and generate similar clones, these neuroblasts are indistinguishable using current visualization techniques. They further comment that they are unable to rule out the possibility that only one neuroblast generates this clone (Schmid et al., 1999)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001415", "meta" : { "definition" : { "val" : "Neuroblast NB4-4 delaminates at S4. It generates a single motorneuron located at the posterior ventral boundary of the clone and projects into the anterior root of the ISN by stage 5. Amongst several local interneurons, it generates at least two intersegmental interneurons, one extending anterior ipsilaterally and the other crossing the anterior commissure (http://www.neuro.uoregon.edu/doelab/lineages/texts/44%20description.html).", "xrefs" : [ "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB3-4and4-4.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/44 description.html" ] }, "comments" : [ "Schmid et al., (1999), and the associated web page (http://www.neuro.uoregon.edu/doelab/lineages/NB3-4and4-4.html), state that because neuroblasts NB3-4 and NB4-4 express a similar array of molecular markers, delaminate at similar times, and generate similar clones, these neuroblasts are indistinguishable using current visualization techniques. They further comment that they are unable to rule out the possibility that only one neuroblast generates this clone (Schmid et al., 1999)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001416", "meta" : { "definition" : { "val" : "Neuroblast NB5-4 most frequently delaminates at S4 in an intermediate column (FBrf0098344).", "xrefs" : [ "FlyBase:FBrf0098344", "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB5-4.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/54 description.html" ] }, "comments" : [ "Using DiI with antibody labelling, Schmidt et al., (1997) propose NB5-4 produces 5-9 thoracic neurons or 3-4 abdominal motorneurons with ipsilateral targets. Schmid et al., (1999), also use DiI with en-GFP, but find 2-3 large cells that match descriptions of CCAP/CAP+ neurosecretory cells, along with abdomen-specific interneurons. Also, Schmid et al., (1999) state that NB5-4 delaminates during S5, whilst Schmidt et al., (1997) find that delamination occurs over the period of S3/4 to S5, most frequently at S4, and as such we have chosen to define NB5-4 as a stage 4 neuroblast." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001417", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001418", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001419", "meta" : { "definition" : { "val" : "An unpaired neuroblast delaminating in stage 4 along the ventral midline of the CNS. It gives rise to a cluster of 5-8 cells with short bilateral projections in the anterior and posterior commissures and long fibers that enters the intersegmental nerve.", "xrefs" : [ "FlyBase:FBrf0072659", "FlyBase:FBrf0112030" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "median neuroblast", "xrefs" : [ "FlyBase:FBrf0072659" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001420", "meta" : { "definition" : { "val" : "A neuroblast delaminating in the fifth and final wave of neuroblast delamination from the ventral neurectoderm. This wave begins during embryonic in late stage 11. The S5 neuroblasts delaminate into columns in between the existing intermediate and lateral columns of neuroblasts (Doe, 1992).", "xrefs" : [ "FlyBase:FBrf0055900", "FlyBase:FBrf0076117" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "S5 neuroblast" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001421", "meta" : { "definition" : { "val" : "Neuroblast NB2-3 delaminates at S5. It generates three large, round axonless cells at the dorsal side of the thoracic clones which are proposed by Schmid et al., (1999) to be latent leg motorneurons that will extend axons during leg disk eversion. It also generates 2-4 small interneurons at the ventral side of the clone. In the abdominal segments only a single large neuroblast is observed at embryonic stage 17, which either does not divide or all progeny die.", "xrefs" : [ "FlyBase:FBrf0084809", "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB2-3.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/23 description.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "NB1-2", "xrefs" : [ "FlyBase:FBrf0055900" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001422", "meta" : { "definition" : { "val" : "Neuroblast NB3-3 delaminates predominantly at S4 (Schmidt et al., 1997). It generates a single motorneuron positioned midway along the dorsoventral axis, though slightly lateral and posterior. It also generates 10-18 interneurons that project across the anterior commissure (Schmid et al., 1999).", "xrefs" : [ "FlyBase:FBrf0098344", "http://www.neuro.uoregon.edu/doelab/lineages/NB3-3.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/33description.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001423", "meta" : { "definition" : { "val" : "Neuroblast NB4-3 delaminates at S5. It generates 8-13 neurons, 10-12 of which are small, axonless interneurons.", "xrefs" : [ "FlyBase:FBrf0098344", "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB4-3.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/43 description.html" ] }, "comments" : [ "Schmidt et al., (1997) describe this lineage as producing motorneurons that project into the SN. Contrarily, Schmid et al., (1999) suggest that the cells identified as motorneurons by Schmidt are actually neurosecretory cells of the TN." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001424", "meta" : { "definition" : { "val" : "Neuroblast NB5-1 delaminates at S5 in the medial column. It generates approximately 6-9 local interneurons that predominantly project across the posterior commissure (Schmid et al., 1999).", "xrefs" : [ "FlyBase:FBrf0098344", "FlyBase:FBrf0112030", "http://www.neuro.uoregon.edu/doelab/lineages/NB5-1.html", "http://www.neuro.uoregon.edu/doelab/lineages/texts/51 description.html" ] }, "comments" : [ "Schmid et al., (1999) comment that NB5-2 may give rise to a larger number of clones, including at least one motorneuron, but were not observed due to observational restrictions." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001425", "meta" : { "definition" : { "val" : "Neuroblast NB5-5 delaminates at S5. 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This term referred to the dorsal wing of the pharyngeal sclerite - but as this was only clear from its synonyms and part relations, it has frequently been used to refer to the ventral surface/layer of the wing blade. There are now 2 replacement terms: one referring to the ventral wing of the pharyngeal sclerite and the other to the dorsal surface of the wing (For IDs, see consider statements associated with this obsolete term)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dorsal arm" }, { "pred" : "hasExactSynonym", "val" : "dorsal cornua" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00007164" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00007165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001854", "meta" : { "definition" : { "val" : "Paired structure of the pharyngeal sclerite that connects the dorsal and ventral arms.", "xrefs" : [ "FlyBase:FBim0000950", "FlyBase:FBrf0045366" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vertical plate" }, { "pred" : "hasRelatedSynonym", "val" : "ventral plate" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001855", "meta" : { "definition" : { "val" : "Unpaired part of the pharyngeal sclerite that connects the paired vertical bridges (vertical plates) .", "xrefs" : [ "FlyBase:FBim0000950", "FlyBase:FBrf0045366" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "latticed process" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001856", "meta" : { "definition" : { "val" : "Duct that arises from invagination from the maxillary and intercalary segments and runs between the dorsal pouch and the pharynx. 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There seem to be two different things referred to as a dorsal pouch. One is a transitional structure formed during development of the head, and the other is an unrelated larval structure. Need to disambiguate/disentangle. 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"http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval anal pad" }, { "pred" : "hasRelatedSynonym", "val" : "anal organ" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001895", "meta" : { "definition" : { "val" : "External opening of the anus.", "xrefs" : [ "FBC:SPR" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001896", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval Malpighian tubule" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : 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This is not, therefore a reliable means of classification. It would only be possible to support this using auto-classification, which is hard. For these reasons, this class has been obsoleted. 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"http://purl.obolibrary.org/obo/FBbt_00001922", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval cervical connective" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001924", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval protocerebral connective" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00001925", "meta" : { "definition" : { "val" : "Protocerebrum of the embryo/larva.", "xrefs" : [ "FBC:SPR" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "synonyms" : [ { "pred" : 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It presents a highly complex dendritic arborization pattern (Grueber et al., 2002).", "xrefs" : [ "FlyBase:FBrf0089570", "FlyBase:FBrf0148966", "FlyBase:FBrf0183734", "http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html" ] }, "comments" : [ "Following the classification system proposed by Grueber et al., (2002), ddaC is a class IV neuron." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00002028", "meta" : { "definition" : { "val" : "Neuron whose cell body is located dorsally in the dorsal group of dendritic arborization neurons. 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Its cell body is located in the ventral cluster of sense organs and is the most posteriorly located of the multidendritic neurons found in these segments. Fasciculates in branch c of the abdominal segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997).", "xrefs" : [ "FlyBase:FBrf0089570", "FlyBase:FBrf0148966", "http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vdap", "http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html" ] }, "comments" : [ "Campos Ortega and Hartenstein (1997) state in one place that this neuron fasciculates with SNc and elsewhere that it fasciculates with SNa. 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this organ (identified as the anterior organ in the dh1-dh2 organ pair) is reported to be tri-innervated in Campos-Ortega and Hartenstein, 1997. 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The salivary duct connects to the pharynx just anterior to the cibarium.", "xrefs" : [ "FlyBase:FBrf0007733" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003129", "meta" : { "definition" : { "val" : "Posterior wall of the labral channel, the anterior-most portion of the adult foregut.", "xrefs" : [ "FlyBase:FBrf0007733" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003130", "meta" : { "definition" : { "val" : "Anterior wall of the labral channel, the anterior-most portion of the adult foregut.", "xrefs" : [ "FlyBase:FBrf0007733" ] }, "comments" : [ "Ferris (1950) claims that the hypopharynx does not exist in D.melanogaster, although the salivary stylet is often mistaken for it. It seems likely that the salivary stylet (FBbt:00004547) and the hypopharynx (FBbt:00003130) described by Bodenstein (1950) are the same structure." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003131", "meta" : { "definition" : { "val" : "Portion of the adult foregut that extends from the cibarium anteriorly, through the brain to the proventriculus posteriorly.", "xrefs" : [ "FlyBase:FBrf0007733" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult oesophagus" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003132", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "oesophageal valve" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003133", "meta" : { "definition" : { "val" : "Pedunculate sac evaginating from the adult foregut just before it meets the midgut. It is a bi-lobed structure capable of considerable extension, whose function is the storage of ingested liquid food.", "xrefs" : [ "FlyBase:FBrf0064792", "FlyBase:FBrf0075527" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pedunculate crop", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003134", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "salivary valve" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003135", "meta" : { "definition" : { "val" : "Salivary gland of the adult.", "xrefs" : [ "FBC:SPR" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003136", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003137", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003138", "meta" : { "definition" : { "val" : "The middle region of the adult alimentary canal, the epithelium of which is lined with peritrophic membrane rather than chitinous intima as for the foregut and hindgut.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ventriculus" }, { "pred" : "hasRelatedSynonym", "val" : "anterior intestine" }, { "pred" : "hasRelatedSynonym", "val" : "mesenteron" }, { "pred" : "hasRelatedSynonym", "val" : "stomach" }, { "pred" : "hasRelatedSynonym", "val" : "vent", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003141" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003139", "meta" : { "definition" : { "val" : "An organ at the junction of the foregut and midgut that has parts derived from both. The outer layer is a saccular modification of the anterior-most part of the midgut wall. This covers the cardial valve (stomodeal valve) formed by the evaginated posterior end of the esophagus.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "comments" : [ "This structure is more correctly referred to as the 'cardia'. Strictly, proventriculus refers to a modification of the foregut just anterior to the stomodeal valve found in many insects. Drosophila has no such foregut modification (Miller, 1950). However, the term 'proventriculus' is the one most commonly used for this structure." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cardia" }, { "pred" : "hasRelatedSynonym", "val" : "stomach", "xrefs" : [ "FlyBase:FBrf0212594" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003140", "meta" : { "definition" : { "val" : "A deep fold in the posterior-most part of the foregut epithelium that forms the inner part of the adult proventriculus (cardia). The space between the two layers of this fold is filled with longitudinal muscle fibers. The stomodeal intima continues over both layers. The cells of the epithelium are cuboidal to columnar and are vacuolate.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cardiac valve" }, { "pred" : "hasRelatedSynonym", "val" : "stomodeal valve" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003142", "meta" : { "definition" : { "val" : "Secreted acellular membrane that lines the midgut.", "xrefs" : [ "FlyBase:FBrf0075527", "PMID:319739" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003143", "meta" : { "definition" : { "val" : "Hindgut of the adult digestive system.", "xrefs" : [ "FlyBase:FBrf0064792", "FlyBase:FBrf0075527" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "posterior intestine" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003144", "meta" : { "definition" : { "val" : "Posterior-most region of the adult hindgut. It consists of a broadly expanded rectal sac (rectal ampulla) that tapers posteriorly to the narrow rectum proper, terminating at the anus. 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Each papillae is a conical thick-walled invagination of the epithelium 100-150um high and 65-85um in diameter basally, containing a narrow central cavity occupied by a bundle of five trachea (Miller, 1950).", "xrefs" : [ "FlyBase:FBrf0186027" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003147", "meta" : { "definition" : { "val" : "Sphincter muscles located at the narrow posterior end of the rectum.", "xrefs" : [ "FlyBase:FBrf0186027" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "adult anal sphincter", "xrefs" : [ "FlyBase:FBrf0186027" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003148", "meta" : { "definition" : { "val" : "Posterior opening of the adult hindgut.", "xrefs" : [ "FBC:SPR" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003149", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0007735", "FlyBase:FBrf0031012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003150", "meta" : { "definition" : { "val" : "Hemocoel of the adult.", "xrefs" : [ "FBC:SPR" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult haemocoel" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003151", "meta" : { "definition" : { "val" : "Hemolymph of the adult circulatory system.", "xrefs" : [ "FBC:SPR" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult haemolymph" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003152", "meta" : { "definition" : { "val" : "Dorsal vessel of the adult. It extends from the sixth abdominal segment to the dorsal anterior region of the brain (Curtis et al., 1999). The anterior portion, which is devoid of ostia, is the aorta, whilst the posterior (caudal) region, which has ostia, forms the heart proper.", "xrefs" : [ "FlyBase:FBrf0108687" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003153", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003154", "meta" : { "definition" : { "val" : "Caudal region of the adult dorsal vessel. It extends from the first to the sixth abdominal segment, lying just below the surface of the cuticle, and has four pairs of ostia (Curtis et al., 1999). It is supported along the midline of the body by a series of paired alary muscles, suspensory fibrils and a rudimentary dorsal diaphragm (Miller, 1950).", "xrefs" : [ "FlyBase:FBrf0007735", "FlyBase:FBrf0108687" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003155", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003156", "meta" : { "definition" : { "val" : "Chamber of the adult heart.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "heart chamber" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003157", "meta" : { "definition" : { "val" : "First, anterior-most chamber of the adult heart. 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It is subcylindrical and occupies abdominal segment 4.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Ht3", "xrefs" : [ "FlyBase:FBrf0007735" ] }, { "pred" : "hasRelatedSynonym", "val" : "chamber 3" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003160", "meta" : { "definition" : { "val" : "Fourth and posterior-most chamber of the adult heart. It tapers posteriorly through segment 5 to the middle of segment 6. Here the slender posterior portion is abruptly expanded and the closed end is stretched between its points of attachment on the rectum and dorsal wall.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Ht4", "xrefs" : [ "FlyBase:FBrf0007735" ] }, { "pred" : "hasRelatedSynonym", "val" : "chamber 4" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003161", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult ostia" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003162", "meta" : { "subsets" : [ 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"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003529", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003530", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003531", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003532", "meta" : { "subsets" : [ 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Assuming numbered from midline out. ds090624." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003577", "meta" : { "definition" : { "val" : "Middle (?) thoracic neuroblast d.", "xrefs" : [ "FlyBase:FBrf0047185" ] }, "comments" : [ "Not clear how the numbering of these neuroblasts works. Assuming numbered from midline out. ds090624." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003578", "meta" : { "definition" : { "val" : "Lateral-most (?) thoracic neuroblast d.", "xrefs" : [ "FlyBase:FBrf0047185" ] }, "comments" : [ "Not clear how the numbering of these neuroblasts works. Assuming numbered from midline out. ds090624." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003579", "meta" : { "definition" : { "val" : "Medial-most (?) of each pair of b neuroblasts.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "comments" : [ "Not clear on origin of numbering for subtypes of b neuroblasts. Have assumed numbered from medial to lateral." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003580", "meta" : { "definition" : { "val" : "Lateral-most (?) of each pair of b neuroblasts.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "comments" : [ "Not clear on origin of numbering for subtypes of b neuroblasts. Have assumed numbered from medial to lateral. ds090624." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003581", "meta" : { "definition" : { "val" : "Small neuroblast located medially, one either side of the midline, between the two rows of s neuroblasts.", "xrefs" : [ "FlyBase:FBrf0047185" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003582", "meta" : { "definition" : { "val" : "Anterior lateral neuroblast of larval thoracic segment. One of a pair of these neuroblasts is present per thoracic segment - located superficially and at the lateral margin of the CNS.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003583", "meta" : { "definition" : { "val" : "Medial, superficial neuroblast of the larval thorax. A single neuroblast is located caudally in each thoracic segment, on the ventral midline.", "xrefs" : [ "FlyBase:FBrf0047185" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003584", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003585", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003586", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003587", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003588", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003589", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003590", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003591", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003592", "meta" : { "definition" : { "val" : "Anterior lateral neuroblast of larval abdominal segment 1. One of a pair of these neuroblasts is present per thoracic segment - located superficially and at the lateral margin of the CNS.", "xrefs" : [ "FlyBase:FBrf0047185" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003593", "meta" : { "definition" : { "val" : "Medial, superficial neuroblast of larval abdominal segment 1. A single neuroblast is located caudally in each thoracic segment, on the ventral midline.", "xrefs" : [ "FlyBase:FBrf0047185" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003594", "meta" : { "definition" : { "val" : "Neuroblast dorsolaterally located in the larval abdominal segment A2.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 2 neuroblast dorso-lateral cluster" }, { "pred" : "hasRelatedSynonym", "val" : "dl" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003595", "meta" : { "definition" : { "val" : "Paired ventrolateral serotonergic neuron of abdominal segment A2.", "xrefs" : [ "FlyBase:FBrf0076116", "FlyBase:FBrf0100717" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 2 ventro-lateral cluster neuron" }, { "pred" : "hasRelatedSynonym", "val" : "vl" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003596", "meta" : { "definition" : { "val" : "Neuroblast ventromedially located in the larval abdominal segment A2.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 2 neuroblast ventro-medial cluster" }, { "pred" : "hasRelatedSynonym", "val" : "paramedial cell" }, { "pred" : "hasRelatedSynonym", "val" : "vm" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003597", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0076116" ] }, "comments" : [ "Obsoleted because there is an abdominal medial neuroblast only in abdominal segment 1." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "m" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00003616" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003598", "meta" : { "definition" : { "val" : "Neuroblast dorsolaterally located in the larval abdomen.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal neuroblast dorso-lateral cluster" }, { "pred" : "hasRelatedSynonym", "val" : "dl" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003599", "meta" : { "definition" : { "val" : "Neuroblast dorsolaterally located in larval abdominal segment A3.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 3 neuroblast dorso-lateral cluster" }, { "pred" : "hasRelatedSynonym", "val" : "dl" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003600", "meta" : { "definition" : { "val" : "Neuroblast dorsolaterally located in larval abdominal segment A4.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 4 neuroblast dorso-lateral cluster" }, { "pred" : "hasRelatedSynonym", "val" : "dl" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003601", "meta" : { "definition" : { "val" : "Neuroblast dorsolaterally located in larval abdominal segment A5.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 5 neuroblast dorso-lateral cluster" }, { "pred" : "hasRelatedSynonym", "val" : "dl" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003602", "meta" : { "definition" : { "val" : "Neuroblast dorsolaterally located in larval abdominal segment A6.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 6 neuroblast dorso-lateral cluster" }, { "pred" : "hasRelatedSynonym", "val" : "dl" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003603", "meta" : { "definition" : { "val" : "Neuroblast dorsolaterally located in larval abdominal segment A7.", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 7 neuroblast dorso-lateral cluster" }, { "pred" : "hasRelatedSynonym", "val" : "dl" } ], "basicPropertyValues" : [ { "pred" : 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{ "pred" : "hasBroadSynonym", "val" : "abdominal 5 ventro-lateral cluster neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003608", "meta" : { "definition" : { "val" : "Paired ventrolateral serotonergic neuron of abdominal segment A6.", "xrefs" : [ "FlyBase:FBrf0076116", "FlyBase:FBrf0100717" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abdominal 6 ventro-lateral cluster neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003609", "meta" : { "comments" : [ "The original term was probably made in error while make a set of terms for clusters of serotonergic neurons. abdominal 7 ventro-lateral neuroblast (FBbt:00100758) 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: [ "Obsoleted because there is an abdominal medial neuroblast only in abdominal segment 1." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "m" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00003616" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003622", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003623", "meta" : { "definition" : { "val" : "Central nervous system of the adult.", "xrefs" : [ "FBC:SPR" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : 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The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003628", "meta" : { "definition" : { "val" : "Period (FBgn0003068) expressing neuron of the adult brain whose cell body is located in the posterior, dorsal-most cortex.", "xrefs" : [ "FlyBase:FBrf0056576", "FlyBase:FBrf0098279", "FlyBase:FBrf0162235" ] }, "comments" : [ "Kaneko et al., (1997) suggest that the larval DN period neurons could be the same cells as the adult DN period neurons based on position of the soma. 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Fibers of two adjacent glomeruli join into bundles that run ipsilaterally to the fan-shaped body and enter it in the fourth layer without crossing each other.", "xrefs" : [ "FlyBase:FBrf0049409" ] }, "comments" : [ "Not to be confused with the vertical system (VS) neurons of the lobula plate (FBbt:00007516)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VFS", "xrefs" : [ "FlyBrain_NDB:10240" ] }, { "pred" : "hasRelatedSynonym", "val" : "VFS" }, { "pred" : "hasRelatedSynonym", "val" : "vertical fiber system" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10240" }, { "val" : "VFB:FBbt_00003634" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003635", "meta" : { "definition" : { "val" : "Neuron whose cell body lies in the cortex just dorsal to the protocerebral bridge and that innervates a single glomerulus of the protocerebral bridge, a segment pair of the fan-shaped body and one of the two ventral bodies (lateral accessory lobes). 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"val" : "alpha L", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "alpha-lobe" }, { "pred" : "hasExactSynonym", "val" : "alpha-lobe of mushroom body" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003690" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00045013" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003691", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "alpha'-lobe" }, { "pred" : "hasExactSynonym", "val" : "alpha'-lobe of mushroom body" }, { "pred" : "hasRelatedSynonym", "val" : "delta lobe" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003691" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00045012" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003693", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "beta-lobe" }, { "pred" : "hasExactSynonym", "val" : "beta-lobe of mushroom body" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003693" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00045017" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003694", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "beta'-lobe" }, { "pred" : "hasExactSynonym", "val" : "beta'-lobe of mushroom body" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003694" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00045016" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003695", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "gamma L", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "gamma-lobe of mushroom body" }, { "pred" : "hasRelatedSynonym", "val" : "gamma-lobe" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003695" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00045015" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003697", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003697" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003698", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "optic focus", "xrefs" : [ "FBC:BrainName" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00003698" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00040032" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003699", "meta" : { "definition" : { "val" : "Nerve connecting the ocelli to the midbrain, where it enters the `superior posterior slope` (FBbt:00045040).", "xrefs" : [ "FBC:BrainName", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "OCN", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "ocellar nerve bundle" }, { "pred" : "hasRelatedSynonym", "val" : "ocellar pedicle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003700", "meta" : { "comments" : [ "See general definition for pars intercerebralis. Can general and adult terms be merged?" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003700" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003701", "meta" : { "definition" : { "val" : "A region of the adult brain that processes visual information from the compound eyes.", "xrefs" : [ "FBC:gg", "ISBN:978-3-11-014898-5" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ol" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003701" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003702", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0064800" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003703", "meta" : { "definition" : { "val" : "Neuron located in the distal region of the optic lobe (Tix et al., 1989), which persists through development and pioneers Bolwig's nerve. In the developing optic lobe, this group of three neurons are fully differentiated before there is any detectable fiber growth in the rest of the optic lobe. Following this, other neuron projections from the optic lobe follow the same path as these pioneers and fasciculate to form Bolwig's nerve (Tix et al., 1989).", "xrefs" : [ "FlyBase:FBrf0049574" ] }, "comments" : [ "Tix et al., (1989) state that in 57 out of 62 third instar larval brain samples only three optic pioneer neurons were observed. However, they found three brains showing four of these neurons, and two cases displaying only two." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "OLP" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003704", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "OLP1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003705", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "OLP2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003706", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "OLP3" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003707", "meta" : { "definition" : { "val" : "Any synaptic neuropil domain that is part of the optic lobe.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "comments" : [ "Obsoleted as part of the adoption of the BrainName standard. We don't have any other terms for classifiying neuropils by partonomy. It is not much used in curation, and where it has been used, optic lobe would have sufficed." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00003701" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003708", "meta" : { "definition" : { "val" : "Lateral-most synaptic neuropil domain of the optic lobes, lying just beneath the compound eyes. It is composed of an array of repetitive cartridge-like units, each of which receives axons from specific sets of ommatidia in the compound eyes.", "xrefs" : [ "FBC:BrainName", "VFB_vol:00003708", "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "LA", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "La" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003708" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003718", "meta" : { "definition" : { "val" : "A monopolar, intrinsic columnar neuron whose cell body lies in the cortex of the lamina and that has a single major projection that projects along a single lamina optic cartridge, crosses the first optic chiasm and terminates in the equivalent column of the medulla.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "monopolar laminar cell" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003718" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003719", "meta" : { "definition" : { "val" : "A lamina monopolar neuron with short collaterals that project radially from the main projection in the lamina (Fischbach and Dittrich, 1989). These short collaterals are postsynaptic to the terminals of photoreceptors R1-6 (Meinertzhagen and O'Neil, 1991). It arborizes in medulla layers M1 and M5. In the medulla, it receives synaptic input from photoreceptor R8 (in M1), makes reciprocal synaptic connections with monopolar lamina cell L5 and centrifugal neuron C2, and makes presynaptic contacts with centrifugal neuron C3 (Takemura et al., 2008). It is also electrically synapsed to lamina monopolar neuron L2 (Joesch et al., 2010). It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0054529", "FlyBase:FBrf0205531", "FlyBase:FBrf0212262" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[OK371]-dVP16AD-Gal4 driver [FBti0129742] (Gao et al., 2008). Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Electrical connectivity was shown by dye labelling (Joesch et al., 2010)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "monopolar laminar cell L1" }, { "pred" : "hasRelatedSynonym", "val" : "L1", "xrefs" : [ "FlyBrain_NDB:10089" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10089" }, { "val" : "VFB:FBbt_00003719" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003720", "meta" : { "definition" : { "val" : "A lamina monopolar neuron with short collaterals that project radially from the main projection in the lamina and that arborizes in medulla layer M2. In the lamina it forms presynaptic connections with R1-6 and reciprocal synaptic connections with lamina monopolar neurons L4 from the same column and from L4 collaterals extending from adjacent columns (Meinertzhagen and O'Neil, 1991). It has both pre and post synaptic connections in medulla layer M2, with synaptic input coming from centrifugal neurons C2 and C3 (Takemura et al., 2008). It is also electrically synapsed to lamina monopolar neuron L1 (Joesch et al., 2010).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0054529", "FlyBase:FBrf0212262" ] }, "comments" : [ "Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Electrical connectivity was shown by dye labelling (Joesch et al., 2010)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "L2", "xrefs" : [ "FlyBrain_NDB:10090" ] }, { "pred" : "hasExactSynonym", "val" : "monopolar laminar cell L2" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10090" }, { "val" : "VFB:FBbt_00003720" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003721", "meta" : { "definition" : { "val" : "A lamina monopolar neuron with short spines that project to one side of the main projection as it extends through the lamina optic cartridge. It terminates with an arborization in medulla layer M3. In the lamina it is postsynaptic to R1-6 (Meinertzhagen and O'Neil, 1991). It forms presynaptic terminals at its terminal arborization in medulla layer M3 (Takemura et al., 2008). It makes synaptic contacts with Tm5a and Tm9 (Gao et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0054529" ] }, "comments" : [ "Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Connectivity with Tm9 and Tm5a inferred from EM reconstructions from a single medulla column (Gao et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "L3", "xrefs" : [ "FlyBrain_NDB:10091" ] }, { "pred" : "hasExactSynonym", "val" : "monopolar laminar cell L3" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10091" }, { "val" : "VFB:FBbt_00003721" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003722", "meta" : { "definition" : { "val" : "A lamina monopolar neuron that arborizes in the proximal lamina, forms a spreading arbor in medulla layer M2 and a small terminal arbor in M5 that penetrates adjacent columns (Fischbach and Dittrich, 1989; Takemura et al., 2008). In the proximal lamina it receives synaptic input from outer photoreceptor (R1-6) axons and forms reciprocal synapses with lamina monopolar neuron L2 within the same column and, via collaterals, with L2s in adjacent columns (Meinertzhagen and O'Neil, 1991). In the medulla it has presynaptic terminals in both M2 and M5 (Takemura et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0054529" ] }, "comments" : [ "Note, Fischbach and Dittrich (1989) have this as arborizing in M4, but we follow the more detailed analysis of Takemura and colleagues (2008) who place the terminal arbor in M5. This difference may have to do with the different ways the two papers define L4. Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Note also that L4x and L4y are simply a way of referring to L4 collaterals from an adjacent cartridge in descriptions of synaptic connectivity (see Meinertzhagen and O'Neil, 1991) and so should not be treated as separate neurons, as they previously have been in this ontology." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "L4", "xrefs" : [ "FlyBrain_NDB:10092" ] }, { "pred" : "hasExactSynonym", "val" : "monopolar laminar cell L4" }, { "pred" : "hasExactSynonym", "val" : "monopolar laminar cell L4x", "xrefs" : [ "FlyBase:FBrf0054529" ] }, { "pred" : "hasExactSynonym", "val" : "monopolar laminar cell L4y", "xrefs" : [ "FlyBase:FBrf0054529" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10092" }, { "val" : "VFB:FBbt_00003722" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003723" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003724" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003725", "meta" : { "definition" : { "val" : "A lamina monopolar neuron that hardly arborizes at all in the lamina, but forms a branched arborization in medulla layers M1 and M2 and a clump of terminals in M5. In the lamina it forms only a few postsynaptic connections (Meinertzhagen and O'Neil, 1991). In the medulla, it forms reciprocal synaptic connections with monopolar lamina neuron L1 in M1 and L5 (Takemura et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0054529", "FlyBase:FBrf0205531" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "monopolar laminar cell L5" }, { "pred" : "hasRelatedSynonym", "val" : "L5", "xrefs" : [ "FlyBrain_NDB:10093" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10093" }, { "val" : "VFB:FBbt_00003725" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003726", "meta" : { "definition" : { "val" : "An intrinsic columnar neuron of the optic lobe that has a cell body in the cortex of the lobula plate and that bifurcates in the second optic chiasm with the two branches innervating either the lobula plate and the lobula or the medulla and the lobula.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003726" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003727", "meta" : { "definition" : { "val" : "An intrinsic columnar neuron whose cell body lies in the cortex of the medulla. The fiber of the T1 cell body branches at the medulla surface to form a T-shaped linking fiber between a bush-like arborization in the distal part of a medulla column (M1 and M2), and a bundle of climbing fibers in the equivalent column of the lamina (Fischbach and Dittrich, 1989). Synaptic connections in the lamina are exclusively postsynaptic (Meinertzhagen and O'Neil, 1991) and include connections to amacrine neurons. In the medulla, it also forms exclusively postsynaptic connections, including synaptic from centrifugal neuron C3 in medulla layer M2 (Takemura et al., 2008). Oddly, no output synapses have been found.", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0054529", "FlyBase:FBrf0205531" ] }, "comments" : [ "Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "T neuron T1" }, { "pred" : "hasExactSynonym", "val" : "T1", "xrefs" : [ "FlyBrain_NDB:10115" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10115" }, { "val" : "VFB:FBbt_00003727" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003728", "meta" : { "definition" : { "val" : "T neuron whose cell body fiber soma sits in the cortex adjacent to the gap between the medulla and lobula plate. Their cell body fibers project through this gap before branching in the second optic chiasm. One branch projects into a medulla column, where it forms a bushy, fine, arborization in medulla layer M9 and then projects through the rest of the medulla column, forming fine arborizations in M5 and M1 and 2. The other branch forms a terminal arborization in lobula layer 3 that is much wider than a single column and has bleb-type terminal branches. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T2", "xrefs" : [ "FlyBrain_NDB:10116" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10116" }, { "val" : "VFB:FBbt_00003728" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003729", "meta" : { "definition" : { "val" : "T neuron whose soma sits in the cortex adjacent to the gap between the medulla and lobula plate. Its cell body fibers project through this gap before branching in the second optic chiasm. One branch projects into a medulla column, where it forms a bushy, fine, arborization in medulla layer M9 and then projects through the rest of the medulla column, bifurcating in medulla layer M5 and forming fine arbors throughout layers M1-4. The other branch forms a terminal arborization in lobula layer 3 that is much wider than a single column and has bleb-type terminal branches.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T2a", "xrefs" : [ "FlyBrain_NDB:10117" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10117" }, { "val" : "VFB:FBbt_00003729" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003730", "meta" : { "definition" : { "val" : "T neuron whose soma sits in the cortex adjacent to the gap between the medulla and lobula plate. Its cell body fiber project through this gap before branching in the second optic chiasm, with one branch forming a bushy, fine, terminal arborization in medulla layer M9 and the other forming a terminal arborization in lobula layers 2 and 3 with mix of bleb-type and fine terminal branches. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T3", "xrefs" : [ "FlyBrain_NDB:10183" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10183" }, { "val" : "VFB:FBbt_00003730" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003731", "meta" : { "definition" : { "val" : "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003731" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003732", "meta" : { "definition" : { "val" : "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate layer 1.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T4a", "xrefs" : [ "FlyBrain_NDB:10118" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10118" }, { "val" : "VFB:FBbt_00003732" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003733", "meta" : { "definition" : { "val" : "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate layer 2.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003733" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003734", "meta" : { "definition" : { "val" : "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate layer 3.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T4c", "xrefs" : [ "FlyBrain_NDB:10119" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10119" }, { "val" : "VFB:FBbt_00003734" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003735", "meta" : { "definition" : { "val" : "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate layer 4.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T4d", "xrefs" : [ "FlyBrain_NDB:10120" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10120" }, { "val" : "VFB:FBbt_00003735" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003736", "meta" : { "definition" : { "val" : "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in lobula layer 1 and the other doubling back to form bleb-type arborizations in the lobula plate.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003736" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003737", "meta" : { "definition" : { "val" : "T neuron T5 with a largely bleb-type terminal arborization in lobula plate layer 1. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T5a", "xrefs" : [ "FlyBrain_NDB:10121" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10121" }, { "val" : "VFB:FBbt_00003737" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003738", "meta" : { "definition" : { "val" : "T neuron T5 with a largely bleb-type terminal arborization in lobula plate layer 2.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T5b", "xrefs" : [ "FlyBrain_NDB:10122" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10122" }, { "val" : "VFB:FBbt_00003738" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003739", "meta" : { "definition" : { "val" : "T neuron T5 with a bleb-type terminal arborization in lobula plate layer 3. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T5c", "xrefs" : [ "FlyBrain_NDB:10123" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10123" }, { "val" : "VFB:FBbt_00003739" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003740", "meta" : { "definition" : { "val" : "T neuron T5 with a largely bleb-type terminal arborization in lobula plate layer 4. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "T5d", "xrefs" : [ "FlyBrain_NDB:10124" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10124" }, { "val" : "VFB:FBbt_00003740" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003741", "meta" : { "definition" : { "val" : "An intrinsic columnar neuron of the visual system whose cell body is located in the medulla cortex and that has a main projection that ascends via the first optic chiasm into the lamina where it is restricted to a single column for most of its length before making wide-field arborizations in the distal lamina. These neurons also arborize on the distal surface of the medulla in a circular field of about 20 columns. Several linking fibers from this arborization descend into M3 where they form a wide arborization field covering about 30-40 columns.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Lawf", "xrefs" : [ "FlyBrain_NDB:10094" ] }, { "pred" : "hasRelatedSynonym", "val" : "Lawf1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10094" }, { "val" : "VFB:FBbt_00003741" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003742", "meta" : { "definition" : { "val" : "Columnar neuron whose soma lies in the cortex between the medulla and the lobula plate that extends through a single column of the medulla and lamina.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003742" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003743", "meta" : { "definition" : { "val" : "A centrifugal neuron with wide field arborizations in the medulla layers M1, M5, M8 and M10 and more restricted arborizations in the lamina (Fischbach and Dittrich, 1989). In the lamina it is presynaptic to lamina monopolar neurons (Meinertzhagen and O'Neil, 1991). In the medulla, it is presynaptic to monopolar lamina neuron L2 and makes reciprocal synaptic connections with L1 in M1 (Takemura et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0054529", "FlyBase:FBrf0205531" ] }, "comments" : [ "Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the distal medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Pre- versus postsynaptic innervation in the proximal medulla was inferred by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "C2", "xrefs" : [ "FlyBrain_NDB:10079" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10079" }, { "val" : "VFB:FBbt_00003743" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003744", "meta" : { "definition" : { "val" : "A centrifugal neuron with wide field arborizations in the medulla layers M1-2, M5, and M8-10 and more restricted arborizations in the lamina (Fischbach and Dittrich, 1989). In the lamina it is presynaptic to lamina monopolar neurons. In the medulla it is presynaptic to monopolar lamina neuron L2 and to T1, and postsynaptic to L1.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the distal medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Pre- versus postsynaptic innervation in the proximal medulla was inferred by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "C3", "xrefs" : [ "FlyBrain_NDB:10080" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10080" }, { "val" : "VFB:FBbt_00003744" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003745", "meta" : { "definition" : { "val" : "Tangential neuron of the optic lobe that projects and arborizes along the plane of one or more layers of the lamina.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Lat" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003745" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003746", "meta" : { "definition" : { "val" : "Intrinsic neuron of the lamina.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "amacrine cell", "xrefs" : [ "FlyBase:FBrf0049410" ] }, { "pred" : "hasRelatedSynonym", "val" : "Lai" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003746" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003747", "meta" : { "definition" : { "val" : "Segment (column) of the lamina defined by the distal-proximal (eye to central brain) projections of photoreceptor cells of a single ommatidium.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cartridge" }, { "pred" : "hasRelatedSynonym", "val" : "lamina cartridge" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003747" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003748", "meta" : { "definition" : { "val" : "The second optic neuropil, sandwiched between the lamina and the lobula complex. 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It is defined by the proximal border of the lamina monopolar neuron L2 arborization to that of the lamina neuron L3 terminal (Fischbach and Dittrich, 1989).", "xrefs" : [ "FBC:BrainName", "FlyBase:FBrf0049410", "FlyBase:FBrf0205531" ] }, "comments" : [ "In the literature there are two methods for describing spatial location of neurons in the visual system: distal-proximal (e.g. Fischbach and Dittrich, 1989), and medial-lateral (e.g. BrainName), both meaning outer and inner, and refer to the distance of a structure along the visual pathway relative to the center of the brain. 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There are 5 cells present in each cluster, all of which express Pdf (FBgn0023178). These neurons send dendrites through the posterior optic commissure to the contralateral optic lobe, where a few short fibers terminate in the accessory medulla, but most arborize extensively in the medulla itself (Helfrich-Forster, 2005; Helfrich-Forster et al., 2007). These arborizations in the medulla are associated with varicosities. These cells also project to the ipsilateral (adjacent) accessory medulla and its ventral extension, where they arborize extensively.", "xrefs" : [ "FlyBase:FBrf0101921", "FlyBase:FBrf0134807", "FlyBase:FBrf0151380", "FlyBase:FBrf0183981", "FlyBase:FBrf0193849" ] }, "comments" : [ "While l-LNv neurons fit the definition of pacemaker neurons based on molecular oscillation of Period (FBgn0003068) and Timeless (FBgn0014396) expression, they do not sustain this molecular oscillation when kept in constant darkness (Yang and Sehgal, 2001; Shafer et al., 2002). Synaptobrevin localization supports the assertion that projections through the posterior optic commissure to the contralateral optic lobe are dendritic (Helfrich-Forster et al., 2007)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "l-LNv" }, { "pred" : "hasExactSynonym", "val" : "l-vLN", "xrefs" : [ "FlyBase:FBrf0209505" ] }, { "pred" : "hasExactSynonym", "val" : "lLNv" }, { "pred" : "hasExactSynonym", "val" : "large LNv" }, { "pred" : "hasExactSynonym", "val" : "large pigment-dispersing hormone-immunoreactive neuron close to medulla" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003763" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003764", "meta" : { "definition" : { "val" : "s-LNv that expresses Pdf (FBgn0023178). There are four of these in each ventral cluster of LNs. Short, fine fibers lacking presynaptic sites contact the accessory medulla, whilst longer processes project toward the dorsal protocerebrum and terminate dorsofrontal to the mushroom body calyx, close to the DN2 neurons (Helfrich-Forster et al., 2007) where they form both pre- and postsynaptic connections (Yasuyama and Meinertzhagen, 2010). Pdf rich dense-synaptic vesicles accumulate in terminal varicosities in these cells, but are not associated with presynaptic sites (Miskiewicz et al., 2004; Yasuyama and Meinertzhagen, 2010). They can be observed docked at the plasma membrane, suggesting paracrine release of Pdf.", "xrefs" : [ "FlyBase:FBrf0179342", "FlyBase:FBrf0191052", "FlyBase:FBrf0193849", "FlyBase:FBrf0209462" ] }, "comments" : [ "Dorsal projections judged by curator to terminate in the superior lateral protocerebrum (BrainName SLP) as defined by the BrainName standard. The presence of presynaptic sites was determined by localization of a neuronal synaptobrevin-GFP fusion (Helfrich-Forster et al., 2007) and by electron-microscopy (Yasuyama and Meinertzhagen, 2010)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sLNv PDF" }, { "pred" : "hasExactSynonym", "val" : "small pigment-dispersing hormone-immunoreactive neuron close to medulla" }, { "pred" : "hasRelatedSynonym", "val" : "small Pdf neuron" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003764" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003765", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0065419" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "PDFCa" }, { "pred" : "hasRelatedSynonym", "val" : "pigment-dispersing hormone-immunoreactive neuron close to calyx" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003766", "meta" : { "definition" : { "val" : "Neuron located anteroventrally to the tritocerebrum that expresses Pdf (FBgn0023178) strongly until 24hrs after eclosion, after which Pdf immunoreactivity in the soma disappears. Within 2-4 days post-eclosion, Pdf immunoreactivity is also lost from the arborizations.", "xrefs" : [ "FlyBase:FBrf0093121" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "PDFTri" }, { "pred" : "hasRelatedSynonym", "val" : "pigment-dispersing hormone-immunoreactive neuron close to tritocerebrum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003767", "meta" : { "definition" : { "val" : "An amacrine neuron that is intrinsic to the medulla, whose soma is located in the cortex of the medulla and that branches and arborizes in the distal medulla. These neurons project through the distal surface of the medulla, to form wide (sometimes very wide) terminal arborizations mainly or completely restricted to a single layer of the medulla.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dm" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003767" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003768", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that branches extensively at the distal surface of the medulla forming a moderately broad arbor with each branch making a distinctive bleb-type terminal in M1 from which short, fine terminal branches project.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dm1", "xrefs" : [ "FlyBrain_NDB:10081" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10081" }, { "val" : "VFB:FBbt_00003768" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003769", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that terminates with a bushy arbor with mixed terminal morphology in layers M4-6.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. Note, this is named by Fischbach and Dittrich as a distal medullary amacrine neuron. but by morphology it looks like it could just as easily be classified as Mi." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dm2", "xrefs" : [ "FlyBrain_NDB:10082" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10082" }, { "val" : "VFB:FBbt_00003769" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003770", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that projects asymmetrically along layers M2 and 3 forming mixed morphology arborizations. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dm3", "xrefs" : [ "FlyBrain_NDB:10083" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10083" }, { "val" : "VFB:FBbt_00003770" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003771", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that projects asymmetrically along layers M5 and 6 forming mixed morphology arborizations. Some collaterals from this projection along M5-6 project back to M4 where they form distinctive terminal blebs.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dm4", "xrefs" : [ "FlyBrain_NDB:10084" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10084" }, { "val" : "VFB:FBbt_00003771" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003772", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that has a moderately broad, fine terminal arborization in layers M4-6. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dm5", "xrefs" : [ "FlyBrain_NDB:10085" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10085" }, { "val" : "VFB:FBbt_00003772" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003773", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that branches extensively at the distal surface of the medulla forming a broad arbor with each branch making a distinctive bleb-type terminal in M1 from which short, fine terminal branches project.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dm6", "xrefs" : [ "FlyBrain_NDB:10086" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10086" }, { "val" : "VFB:FBbt_00003773" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003774", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that branches in layer M6. The branches spread along the layer, forming an arbor in M6 with terminals of mixed morphology. Some collaterals from this arbor extend to M4 where they also spread to form an arbor with terminals of mixed morphology.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dm7", "xrefs" : [ "FlyBrain_NDB:10087" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10087" }, { "val" : "VFB:FBbt_00003774" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003775", "meta" : { "definition" : { "val" : "A columnar neuron whose cell body lies in the medulla cortex and that is intrinsic to the medulla.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mi" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003775" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003776", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron with bushy, fine arborizations in medulla layers M1 and M5, coinciding with the arborization domains of lamina monopolar neuron M1. The projection of this neuron branches at the inner-face of the medulla to form two to three varicose recurrent terminal specializations that extend back up to the inner border of layer M8. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213020" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with an anti-ChAT antibody (Hasegawa et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Mi1", "xrefs" : [ "FlyBrain_NDB:10097" ] }, { "pred" : "hasExactSynonym", "val" : "medullary intrinsic neuron 1" }, { "pred" : "hasRelatedSynonym", "val" : "Mi1" }, { "pred" : "hasRelatedSynonym", "val" : "Sut" }, { "pred" : "hasRelatedSynonym", "val" : "small field unilateral tristratified neuron" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10097" }, { "val" : "VFB:FBbt_00003776" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003777", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M1, M2 and M3, but with only fine arborizations in medulla layers M4, M5, M8 and M9. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Mi2", "xrefs" : [ "FlyBrain_NDB:10101" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10101" }, { "val" : "VFB:FBbt_00003777" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003778", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M3, M6 and M8, but with only fine arborizations in medulla layer M9.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mi3", "xrefs" : [ "FlyBrain_NDB:10102" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10102" }, { "val" : "VFB:FBbt_00003778" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003779", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M1, M2, M3 and M8, but with only fine arborizations in medulla layers M4 and M5, and only bleb-type arborizations in medulla layer M9. 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The projection of this neuron branches at the boundary with M10 to form varicose recurrent terminal specializations that extend back through M9 up to the inner border of layer M8.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mi8", "xrefs" : [ "FlyBrain_NDB:10107" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10107" }, { "val" : "VFB:FBbt_00003783" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003784", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron with a bushy mix of bleb-type and fine terminal arborization in layers M2, M3 and M4. The projection of this neuron branches at the inner-face of the medulla to form varicose recurrent terminal specializations that extend back up to the inner border of layer M8.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mi9", "xrefs" : [ "FlyBrain_NDB:10108" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10108" }, { "val" : "VFB:FBbt_00003784" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003785", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M3, M4, M5 and M8, but with only fine arborizations in medulla layer M9.", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213020" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Mi10a", "xrefs" : [ "FlyBase:FBrf0213020" ] }, { "pred" : "hasRelatedSynonym", "val" : "Mi10", "xrefs" : [ "FlyBase:FBrf0049410" ] }, { "pred" : "hasRelatedSynonym", "val" : "medullary intrinsic neuron Mi10", "xrefs" : [ "FlyBase:FBrf0049410" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00003785" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003786", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron with extensive fine arborizations in medulla layers M6, M8, M9, M10 and the serpentine layer. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). 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All arborize in the lobula and most, but not all, in the medulla.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003788" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003789", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layer 1 with a bleb-type terminal arborization and that has fine arborizations in medulla layer M2 and bleb-type arborizations in M3 and M9. Their arborization pattern in the medulla overlaps with that of lamina monopolar neurons L2 and L3, but not that of L1. 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It has fine arborizations in medulla layers M1, M4, and M5, and has bleb-type arborization in medulla layers M1, M4, M9 and M10.", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213020" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Tm3", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBrain_NDB:10153" ] }, { "pred" : "hasExactSynonym", "val" : "Tm3a", "xrefs" : [ "FlyBase:FBrf0213020" ] }, { "pred" : "hasExactSynonym", "val" : "transmedullary neuron Tm3", "xrefs" : [ "FlyBase:FBrf0049410" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10153" }, { "val" : "VFB:FBbt_00003791" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003792", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layers 1, 2 and 4 with bleb-type arborizations, and with fine arborizations in layer 3. 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It displays fine arborizations in medulla layers M1, M3, M8, and M9.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "TmY7", "xrefs" : [ "FlyBrain_NDB:10175" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10175" }, { "val" : "VFB:FBbt_00003825" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003826", "meta" : { "definition" : { "val" : "Transmedullary Y neuron that terminates with bleb-type arborizations in lobula layers 4 and 5, and in lobula plate layers 1 and 3. 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It displays both fine and bleb-type arborizations in medulla layers M3 and M8, but has only fine arborizations in medulla layer M4. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "TmY9", "xrefs" : [ "FlyBrain_NDB:10177" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10177" }, { "val" : "VFB:FBbt_00003827" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003828", "meta" : { "definition" : { "val" : "Transmedullary Y neuron that terminates with bleb-type arborizations in lobula layers 5 and 6, and in lobula plate layer 1. It displays both fine and bleb-type arborizations in medulla layers M3, M6 and M8, but has only fine arborizations in medulla layer M4 and the serpentine layer. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "TmY10", "xrefs" : [ "FlyBrain_NDB:10165" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10165" }, { "val" : "VFB:FBbt_00003828" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003829", "meta" : { "definition" : { "val" : "Transmedullary Y neuron that terminates with fine arborizations in lobula plate layers 1 and 3, and has bleb-type arborizations in lobula layers 4 and 5, and in lobula plate layer 3. It displays both fine and bleb-type arborizations in medulla layer M3, and has only fine arborizations in medulla layer M8, M9 and M10. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "TmY11", "xrefs" : [ "FlyBrain_NDB:10166" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10166" }, { "val" : "VFB:FBbt_00003829" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003830", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layer 4 with bleb-like terminal arborizations. It has fine arborizations in medulla layers M1, M4, and M5, and has bleb-type arborization in medulla layers M1, M4, M9 and M10. It differs from the transmedullary neuron Tm3 or TmY3 in that an individual of a retinotopic set may or may not form branches in the lobula plate.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Tm3Y", "xrefs" : [ "FlyBrain_NDB:10154" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10154" }, { "val" : "VFB:FBbt_00003830" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003831", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layers 4 and 5 with bleb-type arborizations. It displays fine arborizations in medulla layers M3, M4, M5, M6, M8 and the serpentine layer, and has bleb-type terminals in layers M6 and M8. It differs from transmedullary neuron Tm and transmedullary Y neuron TmY5 in that individuals of a retinotopic set may or may not form branches in the lobula plate.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Tm5Y(11)", "xrefs" : [ "FlyBrain_NDB:10158" ] }, { "pred" : "hasRelatedSynonym", "val" : "Tm5Y(13)", "xrefs" : [ "FlyBrain_NDB:10159" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10158" }, { "val" : "FlyBrain_NDB:10159" }, { "val" : "VFB:FBbt_00003831" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003832", "meta" : { "definition" : { "val" : "An amacrine neuron that is intrinsic to the medulla and that branches and arborizes in the proximal medulla. Generally, the soma is located in the cortex adjacent to the medulla and that projects through the proximal surface of the medulla, to form wide (sometimes very wide) terminal arborizations mainly or completely restricted to a single layer of the medulla.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Pm" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003832" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003833", "meta" : { "definition" : { "val" : "Proximal medullary amacrine neuron that forms a broad terminal arbor with mixed morphology terminals that is restricted to medulla layer M9. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Pm1", "xrefs" : [ "FlyBrain_NDB:10109" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10109" }, { "val" : "VFB:FBbt_00003833" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003834", "meta" : { "definition" : { "val" : "Proximal medullary amacrine neuron branches at the proximal surface of the medulla, with both branches forming a broad terminal arbor with mixed morphology terminals that is restricted to medulla layer M9. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Pm1a", "xrefs" : [ "FlyBrain_NDB:10110" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10110" }, { "val" : "VFB:FBbt_00003834" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003835", "meta" : { "definition" : { "val" : "Proximal medullary amacrine neuron that projects along M7 and branches extensively at the M7/M8 boundary with each branch projecting into medulla layer M9 where it forms an arbor with mixed bleb-type and fine terminals. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003835" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003836", "meta" : { "definition" : { "val" : "Tangential neuron of the optic lobe that projects and arborizes along the plane of one or more medulla layers.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003837", "meta" : { "definition" : { "val" : "Neuron with a giant projection that extends along the serpentine layer sending out collaterals distally that arborize in medulla layer M4 and proximally that arborize in the serpentine layer and in layers M8 and 9.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt1", "xrefs" : [ "FlyBrain_NDB:10050" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10050" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003838", "meta" : { "definition" : { "val" : "Medullary tangential neuron with a giant projection that extends across the anterior-posterior length of medulla layer 10, with some bleb-type arborizations here. It extensively arborizes with both fine and bleb-type arborizations throughout the whole of medulla layer M8, and occasionally crosses into layer M9. It displays both fine and bleb-type arborizations in medulla layers M3, M5 and M6.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. Figure 18 of Fischbach and Dittrich (1989) shows extensive arborization of this neuron in medulla layer M8, but states arborization is in the serpentine layer (M7). We have captured the details of the figure rather than the textual information." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt2", "xrefs" : [ "FlyBrain_NDB:10039" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10039" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003839", "meta" : { "definition" : { "val" : "Medullary tangential neuron which extends superficially throughout the anterior-posterior expanse of the distal medulla. It shows both fine and bleb-like arborizations throughout medulla layers M1, M2 and M3.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt3", "xrefs" : [ "FlyBrain_NDB:10032" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10032" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003840", "meta" : { "definition" : { "val" : "Medullary tangential neuron that principally extends along the border of the serpentine layer and medulla layer M8 for approximately their anterior two-thirds. It shows extensive fine and bleb-like arborizations in medulla layers M8 and M9, but only fine arborizations in the serpentine layer and layer M6. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt4", "xrefs" : [ "FlyBrain_NDB:10036" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10036" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003841", "meta" : { "definition" : { "val" : "Medullary tangential neuron that extends along the proximal face of the medulla. It shows extensive fine and bleb-like arborizations in medulla layers M8, M9, and M10.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt5", "xrefs" : [ "FlyBrain_NDB:10037" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10037" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003842", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt6", "xrefs" : [ "FlyBrain_NDB:10049" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10049" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003843", "meta" : { "definition" : { "val" : "Medullary tangential neuron that enters the medulla through its proximal face at the level of the serpentine layer. It shows extensive fine and bleb-like arborizations in medulla layers M3, M4, M5, M6, the serpentine layer and M8.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt7", "xrefs" : [ "FlyBrain_NDB:10030" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10030" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003844", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003845", "meta" : { "definition" : { "val" : "Medullary tangential neuron whose axon extends along the proximal side of the medulla, and then extends along the top of the medulla neuropil, only sparing the most posterior part of it. It displays bleb-like terminals throughout the top of medulla layer M1, with a few entering the proximal side of layer M2.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt9", "xrefs" : [ "FlyBrain_NDB:10040" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10040" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003846", "meta" : { "definition" : { "val" : "Medullary tangential neuron that has bleb-like terminals in medulla layers M5 and M6. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mt10", "xrefs" : [ "FlyBrain_NDB:10033" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10033" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003847", "meta" : { "definition" : { "val" : "Medullary tangential neuron that enters the medulla via Cuccatti's bundle at the level of the serpentine layer. It shows bleb-like terminals in the serpentine layer and medulla layer M6. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). 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Each branch extends across the lobula, with some bifurcating, before all form terminal arbors that collectively cover the length of lobula layer 4. Terminals are of mixed morphology.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lobular tangential neuron Lt6" }, { "pred" : "hasRelatedSynonym", "val" : "LT6", "xrefs" : [ "FlyBrain_NDB:10201" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10201" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003866", "meta" : { "definition" : { "val" : "A lobula tangential neuron that branches extensively as it enters the lobula in layer 6, with each branch forming a fine, bushy arbor. 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It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC1", "xrefs" : [ "FlyBase:FBrf0193607", "FlyBrain_NDB:10004" ] }, { "pred" : "hasExactSynonym", "val" : "lobular columnar neuron Lcn1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10004" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003872", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron that arborizes in lobula layers 3-5. The distal part of this arborization is fine and bushy while the proximal part has thick projections with bleb-type terminals. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). 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It projects to an optic glomerulus in the ventrolateral protocerebrum. There are an estimated 31-36 cells in this class: 25-29 having their cell bodies in the mid-ventral area of the lateral cell body region, and 6-7 located in its anterior area. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0193607", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). Otsuna states that lcn4 innervates an optic glomerulus in the vlpr and vlpr maps to the VLP in BrainName. Of the sub-regions of the VLP in the BrainName nomenclature, only one is glomerular - the PVLP. So this innervation must be to some optic glomerulus of the PVLP (FBbt:00007582). 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Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC5", "xrefs" : [ "FlyBase:FBrf0193607", "FlyBrain_NDB:10006" ] }, { "pred" : "hasExactSynonym", "val" : "lobular columnar neuron Lcn5" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10006" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003876", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron that branches and arborizes in the lobula with a mix of bleb-type and fine terminals in layers 3-6. It fasciculates in the anterior optic tract, fasciculating with Lcn9 (Otsuna and Ito, 2006), and innervates an optic glomerulus in the lateral-most area of the dorsal-posterior ventrolateral protocerebrum.", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0193607" ] }, "comments" : [ "Otsuna states that lcn6 innervates an optic glomerulus in the vlpr and vlpr maps to the VLP in BrainName. Of the sub-regions of the VLP in the BrainName nomenclature, only one is glomerular - the PVLP. So this innervation must be to some optic glomerulus of the PVLP (FBbt:00007582). 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It has sparse, thin colaterals along its length up to layer 2 where it forms a broad arborization with blebs, and finer arborizations that extend into layer 3.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "comments" : [ "Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC7", "xrefs" : [ "FlyBase:FBrf0193607", "FlyBrain_NDB:10007" ] }, { "pred" : "hasExactSynonym", "val" : "lobular columnar neuron Lcn7" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10007" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003878", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron that branches multiple times in layers 5 and 4 and forms a broad arborization in layer 3 with both bleb-type and fine terminals. 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It bifurcates in the proximal lobula with both branches innervating both the lobula and the lobula plate. Between them the two branches innervate all layers of the lobula and lobula plate.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Lccn1", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBrain_NDB:10008" ] }, { "pred" : "hasExactSynonym", "val" : "lobular complex columnar neuron Lccn1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10065" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003881", "meta" : { "definition" : { "val" : "Extrinsic columnar neuron of the optic lobe whose soma lies in the cortex of the lobula plate. 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It displays both fine and bleb-like terminals in lobula layers 4, 5 and 6. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011). 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It is divided into 4 layers and houses many large tangential neurons.", "xrefs" : [ "VFB_vol:00003885", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.htmll" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "LOP", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "lobula plate neuropil" }, { "pred" : "hasRelatedSynonym", "val" : "Lop" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003885" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00001947" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003886", "meta" : { "definition" : { "val" : "Layer of the lobula plate that abuts the second optic chiasm. 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The terminals of the T neuron T5b arborize in this layer.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "layer Lop2", "xrefs" : [ "FlyBase:FBrf0049410" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00003887" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00040019" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003888", "meta" : { "definition" : { "val" : "Layer of the lobula plate that is third-most from the second optic chiasm. 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The terminals of the T neuron T5d, the T neuron T4d, and most of the vertical system neurons terminate in this layer.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "layer Lop4", "xrefs" : [ "FlyBase:FBrf0049410" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00003889" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00040021" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003890", "meta" : { "definition" : { "val" : "An intrinsic columnar neuron of the optic lobe whose cell body lies in the cortex of the lobula plate, and that arborizes in the lobula and lobula plate.", "xrefs" : [ "FlyBase:FBrf0049410" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "translobula-plate neuron" }, { "pred" : "hasExactSynonym", "val" : "translobullar plate neuron" }, { "pred" : "hasRelatedSynonym", "val" : "Tpl" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003890" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003891", "meta" : { "definition" : { "val" : "Translobula plate neuron that terminates in lobula layer 5 with bleb-type terminals. 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Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Tlp1", "xrefs" : [ "FlyBrain_NDB:10127" ] }, { "pred" : "hasExactSynonym", "val" : "Tpl1" }, { "pred" : "hasExactSynonym", "val" : "translobula plate neuron Tpl1" }, { "pred" : "hasExactSynonym", "val" : "translobula-plate neuron Tlp1" }, { "pred" : "hasExactSynonym", "val" : "translobula-plate neuron Tpl1" }, { "pred" : "hasExactSynonym", "val" : "translobullar plate neuron Tlp1" }, { "pred" : "hasExactSynonym", "val" : "translobullar plate neuron Tpl1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10127" }, { "val" : "VFB:FBbt_00003891" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003892", "meta" : { "definition" : { "val" : "Translobula plate neuron that terminates in lobula layer 4 with bleb-type terminals. It displays both fine and bleb-type arborizations in lobula plate layer 1, but only fine, bushy arborizations in lobula plate layer 2. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Tlp2", "xrefs" : [ "FlyBrain_NDB:10128" ] }, { "pred" : "hasExactSynonym", "val" : "translobula plate neuron Tpl2" }, { "pred" : "hasExactSynonym", "val" : "translobula-plate neuron Tlp2" }, { "pred" : "hasExactSynonym", "val" : "translobula-plate neuron Tpl2" }, { "pred" : "hasExactSynonym", "val" : "translobullar plate neuron Tlp2" }, { "pred" : "hasExactSynonym", "val" : "translobullar plate neuron Tpl2" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10128" }, { "val" : "VFB:FBbt_00003892" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003893", "meta" : { "definition" : { "val" : "Translobula plate neuron that terminates in lobula layer 4 with both fine and bleb-type terminals. 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It lies ventral to glomerulus DM2 and dorsal to the medial compartment of glomerulus VC3.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "comments" : [ "Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal glomerulus VM7" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003973" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003974", "meta" : { "comments" : [ "This class has been obsoleted because it has not been used in curation or outside of original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so does not appear to be useful." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00003925" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003975", "meta" : { "definition" : { "val" : "Dorso-medial glomerulus of the adult antennal lobe. It lies dorsal to glomerulus DM4 and medial to glomerulus DP1m.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "comments" : [ "Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal glomerulus DM1" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003975" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003976", "meta" : { "definition" : { "val" : "Dorso-medial glomerulus of the adult antennal lobe. It lies immediately ventral to glomerulus DM1 in the posterior most strata of the antennal lobe.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "comments" : [ "Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal glomerulus DM4" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003976" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003977", "meta" : { "definition" : { "val" : "Dorso-posterior glomerulus of the adult antennal lobe. Its two compartments lie along the dorsolateral border of the posterior-most strata of the antennal lobe, lateral to glomerulus DM1 and dorsal to glomerulus DL2.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "comments" : [ "Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal glomerulus DP1" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003977" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003978", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003979", "meta" : { "definition" : { "val" : "Commissure consisting of about 2500 axons located anterior and ventral to the fan-shaped body which connects the two antennal lobes at their postero-dorsal corners.", "xrefs" : [ "FlyBase:FBrf0051437", "ISBN:978-3-540-07343-7" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VAC2" }, { "pred" : "hasExactSynonym", "val" : "in an con" }, { "pred" : "hasExactSynonym", "val" : "inter antennal connective" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003979" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003980", "meta" : { "definition" : { "val" : "Nerve carrying the majority of afferents to the antennal lobe. Near its entrance to the brain it consists of about 1700-1800 axons. Approximately 1200 of these are sensory fibers from the third antennal segment, mainly axons from olfactory receptor neurons that project into the antennal lobe ventrally, at its antero-ventral corner (Stocker and Gendre, 1988; Kamikouchi et al., 2006). The remaining 500-600 fibers stem mainly from Johnston's organ neurons and mechanosensory sensilla of the anterior head capsule (Kamikouchi et al., 2006). These axons bypass the antennal lobe and target various neuropil domains including the antennal mechanosensory and motor center.", "xrefs" : [ "FlyBase:FBrf0047813", "FlyBase:FBrf0051437", "FlyBase:FBrf0194812", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas//schematic/frontschem1.html" ] }, "comments" : [ "Stocker and Gendre provide the antennal nerve afferent counts based on TEM micrographs (Stocker and Gendre, 1988). Gross projection patterns within the brain were elucidated by Holmes-Blest reduced silver impregnation (Stocker et al., 1990). That the antennal nerve is composed of some 1200 third antennal segments and 500-600 fibers stemming from the JON and mechanosensory sensilla is based on two lines of evidence: 24hours after amputation of the funiculus, degeneration is seen in all but 500-600 fibers entering the antennal mechanosensory and motor center (Stocker et al., 1990); and Kamikouchi et al., (2006) used enhancer trap labelling and immunolabelling of JONs to trace their projections." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "AN", "xrefs" : [ "FBC:BrainName" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003981", "meta" : { "definition" : { "val" : "The bilateral tegumentary nerves contain axons from mechanoreceptors on the head capsule. Axon fibers target the `AMMC` (FBbt:00003982) and may continue to the subesophageal ganglion and thoracic ganglion.", "xrefs" : [ "FBC:BrainName", "FlyBase:FBrf0007735" ] }, "comments" : [ "This nerve is clearly shown branching from the antennal nerve in Miller, 1950, but need more recent refs for this." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "TgN", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "TgNv", "xrefs" : [ "FlyBase:FBrf0007735" ] }, { "pred" : "hasRelatedSynonym", "val" : "nervus tegumentalis", "xrefs" : [ "FlyBase:FBrf0002274" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003982", "meta" : { "definition" : { "val" : "Neuropil domain located in the deuterocerebrum, postero-ventral to the antennal lobe. It contains the terminals of mechanosensory fibers mainly from the first and second antennal segments, most of which come from Johnston's organ neurons.", "xrefs" : [ "FlyBase:FBrf0194812", "VFB_vol:00003982", "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AMC", "xrefs" : [ "FlyBase:FBrf0187921" ] }, { "pred" : "hasExactSynonym", "val" : "AMMC" }, { "pred" : "hasExactSynonym", "val" : "antennal mechanosensory region" }, { "pred" : "hasExactSynonym", "val" : "antenno-mechanosensory center", "xrefs" : [ "FlyBase:FBrf0187921" ] }, { "pred" : "hasRelatedSynonym", "val" : "dorsal lobe", "xrefs" : [ "PMID:2648971" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00003982" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003983", "meta" : { "definition" : { "val" : "Tract that emerges from the antennal lobe lateral to the inner antenno-cerebral tract and extends into the lateral protocerebrum.", "xrefs" : [ "FBC:BrainName", "FlyBase:FBrf0051437", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "lAPT", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "antenno-glomerular tract" }, { "pred" : "hasRelatedSynonym", "val" : "antennocerebral tract" }, { "pred" : "hasRelatedSynonym", "val" : "antennoglomerular tract" }, { "pred" : "hasRelatedSynonym", "val" : "lateral antennal lobe-protocerebral tract", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "oACT" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003983" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003984", "meta" : { "definition" : { "val" : "Tract branching from the inner antenno-cerebral tract close to the antennal lobe and extending to the lateral horn. Occasionally, fibers leave the middle antenno-cerebral tract halfway and extend along the pedunculus of the mushroom body to the calyx (Stocker, 1990).", "xrefs" : [ "FBC:BrainName", "FlyBase:FBrf0051437", "FlyBase:FBrf0205263" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mACT" }, { "pred" : "hasExactSynonym", "val" : "median antenno-cerebral tract" }, { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "mlAPT", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "medial antenno-cerebral tract" }, { "pred" : "hasRelatedSynonym", "val" : "medial antennocerebral tract" }, { "pred" : "hasRelatedSynonym", "val" : "mediolateral antennal lobe-protocerebral tract", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "middle antennocerebral tract" }, { "pred" : "hasRelatedSynonym", "val" : "middle antennoglomerular tract" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003984" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003985", "meta" : { "definition" : { "val" : "A tract of about 200 axons that projects from the postero-dorsal end of the antennal lobe up to the median dorso-posterior protocerebrum (Stocker, 1990), where it terminates in the lateral horn (BrainName).", "xrefs" : [ "FBC:BrainName", "FlyBase:FBrf0051437", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AGT" }, { "pred" : "hasExactSynonym", "val" : "antenno-glomerular tract" }, { "pred" : "hasExactSynonym", "val" : "iACT" }, { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "mAPT", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "medial antennal lobe-protocerebral tract", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "tractus olfactorio-globularis" }, { "pred" : "hasRelatedSynonym", "val" : "inner antennocerebral tract" }, { "pred" : "hasRelatedSynonym", "val" : "inner antennoglomerular tract" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003985" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003986", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "AST" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003986" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003987", "meta" : { "definition" : { "val" : "A short axon tract containing only a few fibers which projects from the posterior of the antennal lobe, just ventral to the inner antenno-cerebral tract. Fibers from this tract pass into posterior brain areas, e.g. into the region of the great commissure.", "xrefs" : [ "FlyBase:FBrf0006611", "FlyBase:FBrf0051437" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "BR" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003987" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003988", "meta" : { "definition" : { "val" : "An intrinsic neuron that does not cross the midline.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ipsilateral local interneuron" }, { "pred" : "hasRelatedSynonym", "val" : "unilateral local interneuron" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003988" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003989", "meta" : { "definition" : { "val" : "A midline crossing bilateral intrinsic neuron that projects only within some pair of bilaterally symmetric synaptic neuropil domains and their connecting tracts. For example within the left and right antennal lobes and antennal commissure.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "bilateral local interneuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003991", "meta" : { "definition" : { "val" : "Unilateral antennal lobe projection neuron that projects from a single antennal lobe glomerulus to the mushroom body calyx and lateral horn via the inner antenno-cerebral tract.", "xrefs" : [ "FlyBase:FBrf0051437" ] }, "comments" : [ "Maybe iPN." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "uACTI" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003992", "meta" : { "definition" : { "val" : "Bilateral antennal lobe projection neuron whose dendrites innervate a small number of glomeruli in both antennal lobes and whose axon fasciculates with the (inner?) antenno-cerebral tract and innervates the mushroom body calyx and the lateral horn.", "xrefs" : [ "FlyBase:FBrf0051437" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "bACTI" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003992" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003993", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron with fine dendritic arborization throughout the antennal lobe.", "xrefs" : [ "FlyBase:FBrf0051437" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "FAI", "xrefs" : [ "FlyBrain_NDB:10364" ] }, { "pred" : "hasRelatedSynonym", "val" : "FAI" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10364" }, { "val" : "VFB:FBbt_00003993" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003994", "meta" : { "definition" : { "val" : "A bilateral projection neuron of the adult antennal lobe with extensive dendritic arborization in both antennal lobes, extensive axonal arborizations in the posterior brain and a cell body situated in the midline of the subesophageal ganglion.", "xrefs" : [ "FlyBase:FBrf0051437" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "GSI", "xrefs" : [ "FlyBrain_NDB:10365" ] }, { "pred" : "hasRelatedSynonym", "val" : "GSI" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10365" }, { "val" : "VFB:FBbt_00003994" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003995", "meta" : { "definition" : { "val" : "Asymmetric relay interneuron that branches profusely in antennal lobe glomerulus V. It sends a posterior projection that branches once. The lateral branch extends into the ventro-lateral deutocerebrum. The posterior branch connects with the mirror-symmetric contralateral V-relay interneuron in the subesophageal ganglion (SOG), and, slightly lateral to the midline, this process extends into the lateral SOG.", "xrefs" : [ "FlyBase:FBrf0051437" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bVI", "xrefs" : [ "FlyBrain_NDB:10366" ] }, { "pred" : "hasExactSynonym", "val" : "bilateral V-relay interneuron", "xrefs" : [ "FlyBase:FBrf0051437" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10366" }, { "val" : "VFB:FBbt_00003995" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003996", "meta" : { "definition" : { "val" : "A unilateral interneuron with extensive arborization in one antennal lobe and the posterior brain, and a process that extends into the thorax.", "xrefs" : [ "FlyBase:FBrf0051437" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "TI", "xrefs" : [ "FlyBrain_NDB:10367" ] }, { "pred" : "hasRelatedSynonym", "val" : "TI" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10367" }, { "val" : "VFB:FBbt_00003996" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003997", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00003997" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003998", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "deutocerebral commissural tract" } ], "xrefs" : [ { "val" : "VFB:FBbt_00003998" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00003999", "meta" : { "definition" : { "val" : "Neuromere of intercalary segment.", "xrefs" : [ "FlyBase:FBrf0074226", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004000", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004000" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004001", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004001" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004002", "meta" : { "comments" : [ "Better recorded as connected_to than part_of tritocerebrum? VH." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004002" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004003", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004003" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004004", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004004" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004005", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004005" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004006", "meta" : { "comments" : [ "Better recorded as connected_to than part_of tritocerebrum? VH." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "pharyngeal gustatory association centre" } ], "xrefs" : [ { "val" : "VFB:FBbt_00004006" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004007", "meta" : { "comments" : [ "Better recorded as connected_to than part_of tritocerebrum? VH." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004007" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004008", "meta" : { "comments" : [ "Better recorded as connected_to than part_of tritocerebrum? VH." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004008" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004009", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004009" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004010", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004010" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004011", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004011" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004012", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004012" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004013", "meta" : { "definition" : { "val" : "Region of the brain beneath the esophagus, consisting of the fused ganglia of the three gnathal segments.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "SEG", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "SOG" }, { "pred" : "hasExactSynonym", "val" : "suboesophageal ganglion", "xrefs" : [ "FlyBase:FBrf0080339" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004014", "meta" : { "comments" : [ "Maybe - gustatory center." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "labellar gustatory association centre" } ], "xrefs" : [ { "val" : "VFB:FBbt_00004014" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004015", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004015" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004016", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004016" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004017", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004017" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004018", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00004018" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004019", "meta" : { "definition" : { "val" : "Nerve connecting the posterior-most subesophageal ganglion to the thoracico-abdominal ganglion in the adult CNS.", "xrefs" : [ "FBC:BrainName", "FlyBase:FBrf0064803" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "CV", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "cephalo-thoracic cord", "xrefs" : [ "FlyBase:FBrf0007733" ] }, { "pred" : "hasExactSynonym", "val" : "cephalo-thoracic nerve strand" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004020", "meta" : { "definition" : { "val" : "A large, descending neuron that controls jump escape behavior (GO:0007630). Each adult has a bilaterally symmetric pair of these neurons, each with a large cell body at the posterior of the protocerebrum and a long primary neurite (GO:0070852) that branches to forms an extensive dendritic tree in the brain and an axon that projects, via the cervical connective, to the mesothorax. Targets of dendritic arborization include zone A of the antennal mechanosensory and motor center (AMMC) (Kamikouchi et al, 2009) and the inferior ventro-lateral protocerebrum. In the mesothorax, the axon forms electrical synapses with tergotrochanteral muscle motor neuron (TTMn) and peripherally synapsing interneurons (PSI)) of the mesothorax that in turn synapse to the motor neurons of the dorso-longitudinal flight muscles.", "xrefs" : [ "FlyBase:FBrf0044916", "FlyBase:FBrf0085744", "FlyBase:FBrf0207518", "http://web.neurobio.arizona.edu/Flybrain/html/contrib/1997/moffat97a/l-307.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "GF", "xrefs" : [ "FlyBase:FBrf0085744" ] }, { "pred" : "hasExactSynonym", "val" : "GFN", "xrefs" : [ "FlyBase:FBrf0207518" ] }, { "pred" : "hasExactSynonym", "val" : "giant fiber neuron" }, { "pred" : "hasExactSynonym", "val" : "giant fibers" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004021", "meta" : { "definition" : { "val" : "The pharyngeal nerve, 7um thick, arises from the subesophageal ganglion close to, or fused with, the accessory pharyngeal nerve at its extreme base. After branching to the cibarial sense organ, it loops beneath muscle 9 near the cibarial-esophageal junction to anastomose medially with the stomodeal nerve and the contralateral pharyngeal nerve. From the region of these anastomoses a single median nerve extends ventrally and gives a number of branches to the dilator muscle of the cibarial pump (Miller, 1950).", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "comments" : [ "Need connectivity information from VH and AJ." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasRelatedSynonym", "val" : "PhN", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "PhyNv", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004022", "meta" : { "definition" : { "val" : "Neuron innervating the dorsal cibarial sense organ.", "xrefs" : [ "FlyBase:FBrf0074012", "FlyBase:FBrf0208984" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004023", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "procurrent nerve" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004024", "meta" : { "definition" : { "val" : "The ~5um thick accessory pharyngeal nerve (Miller, 1950) contains axons connecting with the lower, anterior half of the adult head capsule. The two contralateral nerves closely parallel the pharyngeal nerves in their exit from the mandibular neuromere of the subesophageal ganglion, but penetrate at a lower level into the space between the anterior cibarial plate and the dilator muscles. From here, the nerve enters the labrum to connect with its muscles and sense organs.", "xrefs" : [ "FBC:BrainName", "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasRelatedSynonym", "val" : "APhN", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "AcPhyNv", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004025", "meta" : { "definition" : { "val" : "One of two neurons innervating the proximal sensillum of the ventral cibarial sense organ.", "xrefs" : [ "FlyBase:FBrf0068700", "FlyBase:FBrf0074012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004026", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004027", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0074012" ] }, "comments" : [ "Need connectivity information from VH and AJ." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004028", "meta" : { "definition" : { "val" : "The ~10um adult labial nerve arises from the ventral side of the subesophageal ganglion. 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"http://purl.obolibrary.org/obo/FBbt_00004072", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "vtpmn" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004073", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "TDTmn" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004074", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0048552" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "MN" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004075", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004076", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004077", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004078", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004079", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004080", "meta" : { "definition" : { "val" : "Axon bundle originating in the wing.", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004083", "meta" : { "definition" : { "val" : "Large, singly-innervated campaniform sensillum of the distal radius.", "xrefs" : [ "FlyBase:FBrf0032909", "FlyBase:FBrf0040724" ] }, "comments" : [ "Note that several references use the term 'giant sensillum of the distal radius' (e.g. Palka et al., 1979), and others use the term 'giant sensillum of the dorsal radius' (e.g. Huang et al., 1991). For consistency, we adopt this latter usage." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "giant sensillum of the dorsal radius", "xrefs" : [ "FlyBase:FBrf0032909" ] }, { "pred" : "hasRelatedSynonym", "val" : "sensillum campaniformium of dorsal radius Sc1", "xrefs" : [ "FlyBase:FBrf0088656" ] }, { "pred" : "hasRelatedSynonym", "val" : "wing nerve GSR" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004084", "meta" : { "definition" : { "val" : "Humeral crossvein campaniform sensilla located on the dorsal side of the wing. It is situated close to the ventral humeral crossvein campaniform sensillum separated by the intermediate portion of the costal nerve (Murray et al., 1984).", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "HCV" }, { "pred" : "hasRelatedSynonym", "val" : "d.HCV" }, { "pred" : "hasRelatedSynonym", "val" : "dHCV", "xrefs" : [ "FlyBase:FBrf0040724" ] }, { "pred" : "hasRelatedSynonym", "val" : "wing nerve dHCV" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004085", "meta" : { "definition" : { "val" : "Humeral crossvein campaniform sensilla located on the ventral side of the wing. It is situated close to the dorsal humeral crossvein campaniform sensillum separated by the intermediate portion of the costal nerve (Murray et al., 1984).", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "wing nerve vHCV" }, { "pred" : "hasRelatedSynonym", "val" : "v.HCV" }, { "pred" : "hasRelatedSynonym", "val" : "vHCV" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004086", "meta" : { "definition" : { "val" : "Campaniform sensilla associated with the anterior cross vein and wing vein L3.", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sensillum campaniformium of anterior crossvein" }, { "pred" : "hasRelatedSynonym", "val" : "ACV", "xrefs" : [ "FlyBase:FBrf0040724" ] }, { "pred" : "hasRelatedSynonym", "val" : "wing nerve ACV" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004087", "meta" : { "definition" : { "val" : "Most proximal of the three dorsal sensilla of wing vein L3.", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L3-1", "xrefs" : [ "FlyBase:FBrf0040724" ] }, { "pred" : "hasRelatedSynonym", "val" : "wing nerve L3-1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004088", "meta" : { "definition" : { "val" : "Medial campaniform sensilla of wing vein L3.", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L3-2" }, { "pred" : "hasRelatedSynonym", "val" : "wing nerve L3-2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004089", "meta" : { "definition" : { "val" : "Distal most of the three dorsal sensilla of wing vein L3.", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L3-3" }, { "pred" : "hasRelatedSynonym", "val" : "wing nerve L3-3" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004090", "meta" : { "definition" : { "val" : "Mono-innervated sensilla of wing vein L3. It is found close to the point where L3 connects with wing vein L2.", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "wing nerve L3-v" }, { "pred" : "hasRelatedSynonym", "val" : "L3-v" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004091", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ovoid" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004092", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004093", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0052426" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "VNTC" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004094", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004095", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004096", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004097", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004098", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gustatory centre of genitalia" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004099", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBim0000064", "FlyBase:FBim0000065", "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AbNvTr", "xrefs" : [ "FlyBase:FBrf0007735", "FlyBase:FBrf0193596" ] }, { "pred" : "hasExactSynonym", "val" : "abdominal median nerve trunk", "xrefs" : [ "FlyBase:FBrf0193596" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004100", "meta" : { "definition" : { "val" : "Pdf positive neuron whose soma is located in the cortex of the fused adult abdominal ganglia. There are 4-6 of these, all of which project posteriorly, fasciculating with the abdominal nerve trunk.", "xrefs" : [ "FlyBase:FBrf0093121" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "PDFAb" }, { "pred" : "hasRelatedSynonym", "val" : "pigment-dispersing hormone-immunoreactive neuron of abdominal neuromere" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004101", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0052426" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "peptinergic neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004102", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "dorsal group dA" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004103", "meta" : { "definition" : { "val" : "Peptidergic neuron located at the ventral surface of the larval ventral nerve cord in abdominal segments A2-A4.", "xrefs" : [ "FlyBase:FBrf0100681", "FlyBase:FBrf0158877", "FlyBase:FBrf0214309" ] }, "comments" : [ "Suska et al., 2011, use immunoreactivity to proCapa, Dimm and Dac to identify vA neurons. Expression is restricted to abdominal segments A2-A4 from embryonic stage 17 onwards, but is present in vA-like cells in most abdominal and thoracic segments from stage 14 to 17." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA neuron", "xrefs" : [ "FlyBase:FBrf0158877" ] }, { "pred" : "hasExactSynonym", "val" : "vA neuron" }, { "pred" : "hasExactSynonym", "val" : "ventral-abdominal neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004104", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004105", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBim0000064", "FlyBase:FBim0000065", "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Ab1Nv", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004106", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBim0000064", "FlyBase:FBim0000065", "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AbNv2", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004107", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBim0000064", "FlyBase:FBim0000065", "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AbNv3", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004108", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBim0000064", "FlyBase:FBim0000065", "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AbNv4", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004109", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBim0000064", "FlyBase:FBim0000065", "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AbNv5", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004110", "meta" : { "comments" : [ "Not clear where this term comes from. No A6 specific adult abdominal nerve marked in main classical references: FBrf0007735 or FBrf0002274." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004111", "meta" : { "comments" : [ "Not clear where this term comes from. No A7 specific adult abdominal nerve marked in main classical references: FBrf0007735 or FBrf0002274." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004112", "meta" : { "comments" : [ "Not clear where this term comes from. No A8 specific adult abdominal nerve marked in main classical references: FBrf0007735 or FBrf0002274." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004113", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0007734", "FlyBase:FBrf0031004" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004114", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004115", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004116", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004117", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "proclinate orbital bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004118", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "anterior reclinate orbital bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004119", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "posterior reclinate orbital bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004120", "meta" : { "definition" : { "val" : "Small bristle of the posterior head, located just above the neck (occipital foramen) arranged in a dense cluster.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "occipital seta", "xrefs" : [ "FlyBase:FBrf0007734" ] }, { "pred" : "hasRelatedSynonym", "val" : "supracervical bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004121", "meta" : { "definition" : { "val" : "Large bristle on top of the head, immediately medial to the eye. There are two pairs of these per animal.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vertical seta", "xrefs" : [ "FlyBase:FBrf0007734" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004122", "meta" : { "definition" : { "val" : "The anterior-most of each pair of vertical bristles.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "inner vertical bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004123", "meta" : { "definition" : { "val" : "The posterior-most of each pair of vertical bristles.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "outer vertical bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004124", "meta" : { "definition" : { "val" : "Small bristle of the anterior head, located above the antennae on the postfrons in two arcs of 4 bristles each, arranged so that the ventral-most bristle occupies a more medial position than the dorsal-most.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "frontal seta", "xrefs" : [ "FlyBase:FBrf0007734" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004125", "meta" : { "definition" : { "val" : "Small bristle of the anterior head, located on the postfrons immediately medial to the eye and arranged in a dorsal to ventral line.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fronto-orbital seta", "xrefs" : [ "FlyBase:FBrf0007734" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004126", "meta" : { "definition" : { "val" : "Large bristle of the dorsal head, located immediately anterior to the ocelli. There are two of these per animal.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "postvertical seta", "xrefs" : [ "FlyBase:FBrf0007734" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004127", "meta" : { "definition" : { "val" : "Small bristle of the posterior head, located immediately adjacent to the posterior of the eye.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "postorbital seta", "xrefs" : [ "FlyBase:FBrf0007734" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004128", "meta" : { "definition" : { "val" : "Large bristle of the dorsal head, located immediately posterior to the ocelli. There are two of these per animal.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ocellar seta", "xrefs" : [ "FlyBase:FBrf0007734" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004129", "meta" : { "definition" : { "val" : "Small bristle of the dorsal head, located between the ocelli, arranged in two anterior-posterior rows.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "interocellar seta", "xrefs" : [ "FlyBase:FBrf0007734" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004130", "meta" : { "definition" : { "val" : "Curved bristle of head capsule, located under the eyes and above the mouthparts.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004131", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004132", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004133", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "interfacetal bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004134", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004135", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004136", "meta" : { "definition" : { "val" : "Sensory bristle on the anterior plate of the cibarium. These bristles project upwardly and are arranged in two rows.", "xrefs" : [ "FlyBase:FBrf0007733", "FlyBase:FBrf0167539" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cibarial fish trap bristle" }, { "pred" : "hasExactSynonym", "val" : "cibarial fishtrap bristle" }, { "pred" : "hasExactSynonym", "val" : "filter apparatus of McAlpine" }, { "pred" : "hasRelatedSynonym", "val" : "posterior cibarial setae" }, { "pred" : "hasRelatedSynonym", "val" : "satellite bristles", "xrefs" : [ "FlyBase:FBrf0074012" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004137", "meta" : { "definition" : { "val" : "One of 6-8 singly innervated bristles of dorsal row of the cibarium.", "xrefs" : [ "FlyBase:FBrf0035962", "FlyBase:FBrf0053815", "FlyBase:FBrf0074012", "FlyBase:FBrf0167539" ] }, "comments" : [ "Disambiguation: these bristles are sometimes referred to as the 'dorsal row' (Stocker and Schorderet, 1981; Nayak and Singh, 1983), which may be confused with the 'dorsal row' sensilla of the anterior wing margin (Bate and Martinez Arias, 1991). They are also referred to as the upper (or proximal) fishtrap bristles (Gendre et al., 2004)." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "dorsal row" }, { "pred" : "hasExactSynonym", "val" : "dorsal row cibarial fish-trap bristle" }, { "pred" : "hasExactSynonym", "val" : "upper row cibarial fish trap bristle" }, { "pred" : "hasExactSynonym", "val" : "upper row cibarial fish-trap bristle" }, { "pred" : "hasExactSynonym", "val" : "upper row cibarial fishtrap bristle" }, { "pred" : "hasRelatedSynonym", "val" : "DB" }, { "pred" : "hasRelatedSynonym", "val" : "filter apparatus of McAlpine" }, { "pred" : "hasRelatedSynonym", "val" : "fulcral organ" }, { "pred" : "hasRelatedSynonym", "val" : "posterior cibarial setae" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-12T12:10:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004138", "meta" : { "definition" : { "val" : "One of 12-15 singly innervated small bristles of the ventral row of the cibarium.", "xrefs" : [ "FlyBase:FBrf0035962", "FlyBase:FBrf0053815", "FlyBase:FBrf0074012", "FlyBase:FBrf0167539" ] }, "comments" : [ "Disambiguation: these bristles are sometimes referred to as the 'ventral row' (Stocker and Schorderet, 1981; Nayak and Singh, 1983), which may be confused with the 'ventral row' sensilla of the anterior wing margin (Bate and Martinez Arias, 1991). Also referred to as the lower/distal fishtrap bristles (Gendre et al., 2004)." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ventral row" }, { "pred" : "hasExactSynonym", "val" : "lower row cibarial fish trap bristle" }, { "pred" : "hasExactSynonym", "val" : "lower row cibarial fish-trap bristle" }, { "pred" : "hasExactSynonym", "val" : "lower row cibarial fishtrap bristle" }, { "pred" : "hasRelatedSynonym", "val" : "VB" }, { "pred" : "hasRelatedSynonym", "val" : "ventral row cibarial fish-trap bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-12T12:22:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004139", "meta" : { "definition" : { "val" : "Sense organ located in the cibarium.", "xrefs" : [ "FlyBase:FBrf0035962", "FlyBase:FBrf0167539" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "fulcral organ" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004140", "meta" : { "definition" : { "val" : "Dorsal-most cibarial sense organ near the upper end of the posterior cibarial plate, and innervated by the pharyngeal nerve.", "xrefs" : [ "FlyBase:FBrf0007733", "FlyBase:FBrf0074012" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DCSO" }, { "pred" : "hasRelatedSynonym", "val" : "dorsal fulcral organ of Hertweck", "xrefs" : [ "FlyBase:FBrf0075527" ] }, { "pred" : "hasRelatedSynonym", "val" : "fulcralorgan", "xrefs" : [ "FlyBase:FBrf0035962" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004141", "meta" : { "definition" : { "val" : "Most posterior of the two dorsal cibarial sensilla (Montell, 2009). Innervated by three gustatory receptors (Gendre et al, 2004).", "xrefs" : [ "FlyBase:FBrf0074012", "FlyBase:FBrf0167539", "FlyBase:FBrf0208984" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "DCSO1" }, { "pred" : "hasRelatedSynonym", "val" : "dorsal cibarial sensillum 1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004142", "meta" : { "definition" : { "val" : "Most anterior of the two dorsal cibarial sensilla (Montell, 2009). Innervated by three gustatory receptors (Gendre et al., 2004).", "xrefs" : [ "FlyBase:FBrf0074012", "FlyBase:FBrf0167539", "FlyBase:FBrf0208984" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "DCSO2" }, { "pred" : "hasRelatedSynonym", "val" : "dorsal cibarial sensillum 2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004143", "meta" : { "definition" : { "val" : "Ventral-most cibarial sense organ near the upper end of the posterior cibarial plate, and innervated by the pharyngeal nerve (Demerec, 1994; Nayak and Singh, 1983). 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The external sensory structure is perforated by pores, arranged along a complicated pattern of branched lines, that connect to a lymph-filled lumen containing the highly branched dendrites of 2-4 ORNs.", "xrefs" : [ "FlyBase:FBrf0104820", "FlyBase:FBrf0128642" ] }, "comments" : [ "Morphology is consistent with these sensilla being olfactory (Shanbhag et al., 1999). This function has been directly confirmed by electrophysiology (Clyne et al., 1997)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FT_new", "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#hidden_assertion" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004176", "meta" : { "definition" : { "val" : "Small olfactory basiconic sensillum on antennal segment 3. The surface of the sensillum is perforated by longitudinal rows of pores, connecting to a lymph space innervated by 2 branched olfactory receptor neuron dendrites.", "xrefs" : [ "FlyBase:FBrf0104820", "FlyBase:FBrf0128642" ] }, "comments" : [ "Morphology is consistent with these sensilla being olfactory (Shanbhag et al., 1999). This function has been directly confirmed by electrophysiology (Clyne et al., 1997)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#hidden_assertion" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004177", "meta" : { "definition" : { "val" : "Olfactory sensillum coeloconicum that is part of antennal segment 3. A short conical peg arising from a broad basal platform, basally smooth but distally having deep longitudinal grooves. The peg has a double cuticular wall. The inner wall encloses a central lumen innervated by olfactory receptor neuron dendrites. Distally, the central lumen is connected to the outer, sensillum lymph-filled chamber by radial spoke channels.", "xrefs" : [ "FlyBase:FBrf0104820", "FlyBase:FBrf0128642" ] }, "comments" : [ "Morphology is consistent with these sensilla being olfactory (Shanbhag et al., 1999). This function has been directly confirmed by electrophysiology (Clyne et al., 1997)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#hidden_assertion" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004178", "meta" : { "definition" : { "val" : "Compound chordotonal organ of antennal segment 2 involved in hearing (Gopfert and Robert, 2002), direction-sensitive wind detection (Yorozu et al., 2009) and gravitaxis (Kamikouchi et al., 2009). The actin-filament rich basal tips of the Johnston's organ scolopidia connect to the inner surface of antennal segment 2, and the apical tips connect to the hook of antennal segment 3 (Gopfert and Robert, 2002). Its sensory neurons (Johnston's organ neurons or JONs) are connected to the Johnston's organ nerve (Kamikouchi et al., 2006), and predominantly innervate the antennal mechanosensory and motor center (AMMC). There are 477 +/- 24 cell bodies, arranged in a bowl shape lying vertically with the 'top' facing the lateral side, and forming a ring around the antennal nerve (Kamikouchi et al., 2006). JONs connecting to opposing sides of the hook are alternatively stimulated by stretching or compression according to the hook's oscillatory movement (Gopfert and Robert, 2002).", "xrefs" : [ "FlyBase:FBrf0147122", "FlyBase:FBrf0179481", "FlyBase:FBrf0187921", "FlyBase:FBrf0194812", "FlyBase:FBrf0207559", "ISBN:978-3-11-014898-5" ] }, "comments" : [ "Yorozu et al., 2009, identify tonically activated Johnston's organ neurons that respond to forward or reverse deflection of the antenna. Genetic ablation of these neurons inhibits wind-induced behavioural responses without impairing hearing. Further, by expression of tetanus toxin, Kamikouchi et al., 2009, identify the same neuronal population as essential for gravitaxis behaviour." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "JO", "xrefs" : [ "FlyBase:FBrf0210248" ] }, { "pred" : "hasExactSynonym", "val" : "Johnston's organ" }, { "pred" : "hasRelatedSynonym", "val" : "chordotonal organ of antennal segment 2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004179", "meta" : { "definition" : { "val" : "A three-chambered pit organ on antennal segment 3 that contains many sensilla. 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An organism of indeterminate (or any) stage can be referred to using the term 'organism' (FBbt:00000001). 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It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina.", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0064798" ] }, "comments" : [ "The name photoreceptor cell R3 is occasionally, mistakenly assumed to refer to any Rh3 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lamina receptor cell R3" }, { "pred" : "hasRelatedSynonym", "val" : "receptor cell R3" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10111" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003712" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004218", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004219", "meta" : { "definition" : { "val" : "Outer photoreceptor cell of the adult eye whose rhabdomere is located in the middle of the longer of the two non-parallel sides of trapezoid of rhabdomeres in each ommatidium, in between the rhabdomeres of R3 and R5. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina.", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0064798" ] }, "comments" : [ "The name photoreceptor cell R4 is occasionally, mistakenly assumed to refer to any Rh4 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lamina receptor cell R4" }, { "pred" : "hasRelatedSynonym", "val" : "receptor cell R4" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10111" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003713" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004220", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004221", "meta" : { "definition" : { "val" : "Outer photoreceptor cell of the adult eye whose rhabdomere is located at a non-right angle vertex of the shorter of the two parallel sides of the trapezoid of rhabdomeres in each ommatidium. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina.", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0064798" ] }, "comments" : [ "The name photoreceptor cell R5 is occasionally, mistakenly assumed to refer to any Rh5 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lamina receptor cell R5" }, { "pred" : "hasRelatedSynonym", "val" : "receptor cell R5" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10111" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003714" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004222", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004223", "meta" : { "definition" : { "val" : "Outer photoreceptor cell of the adult eye whose rhabdomere is located at the right angle vertex of the shorter of the two parallel sides of the trapezoid of rhabdomeres in each ommatidium. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina.", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0064798" ] }, "comments" : [ "The name photoreceptor cell R6 is occasionally, mistakenly assumed to refer to any Rh6 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lamina receptor cell R6" }, { "pred" : "hasRelatedSynonym", "val" : "receptor cell R6" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10111" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003715" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004224", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004225", "meta" : { "definition" : { "val" : "Inner photoreceptor cell of the ommatidium whose centrally located rhabdomere extends across the distal two thirds (approximately) of each ommatidium. Each has a single axon that extends through a single lamina optic cartridge without making synapses. This axon crosses the first optic chiasm and extends through a single column of the medulla where it makes pre-synaptic contacts, mainly with medulla layers M1 and M5 (Takemura et al., 2008) before terminating in M6. It also receives synaptic input from photoreceptor cell R8 (Takemura et al., 2008), mostly in M3, and is presynaptic to Dm8a (in M6) and Tm5a (Gao et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0064798", "FlyBase:FBrf0205531", "FlyBase:FBrf0206213" ] }, "comments" : [ "The name photoreceptor cell R7 is occasionally, but mistakenly, assumed to refer to any Rh7 expressing photoreceptor cell. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798). Connectivity with Dm8a and Tm5a inferred from EM reconstructions from a single medulla column or a single EM section (Gao et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lamina receptor cell R7" }, { "pred" : "hasRelatedSynonym", "val" : "receptor cell R7" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10112" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003716" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004226", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004227", "meta" : { "definition" : { "val" : "Inner photoreceptor cell of the ommatidium whose centrally located rhabdomere extends across the proximal third (approximately) of each ommatidium. Each has a single axon that extends through a single lamina optic cartridge (FBbt:00003747) without making synapses. This axon crosses the first optic chiasm and enters the equivalent column of the medulla, making presynaptic contacts in M1-3 and terminating in M3. Presynaptic contacts in M1 are mainly to lamina monopolar neurons L1 and L5 (Takemura et al., 2008). Presynaptic contacts to photoreceptor R7 are more distal - concentrated in M3 (Takemura et al., 2008). It also makes presynatic contacts to Tm9 (Gao et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0064798", "FlyBase:FBrf0205531", "FlyBase:FBrf0206213" ] }, "comments" : [ "Fischbach and Dittrich (1989) suggest there may be two variants of R8, terminating in M3 and M4 respectively. At the time of editing, these had not been reported in other papers, so these terms have been left out for now, as they may represent variation in the population rather than distinct classes. Note, connectivity extrapolated from connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008), and has, perhaps dangerously, been assumed to apply to all members of this photoreceptor class. Connectivity with Tm9 inferred from EM reconstructions from a single medulla column (Gao et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lamina receptor cell R8" }, { "pred" : "hasRelatedSynonym", "val" : "receptor cell R8" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10113" }, { "val" : "FlyBrain_NDB:10114" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003717" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004228", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004229", "meta" : { "definition" : { "val" : "Epithelial cell that is part of early ommatidial preclusters but which, unlike the rest of the cells in the precluster, rejoins the surrounding undifferentiated tissue of the eye disc. Mystery cells are usually located between putative R3 and R4 cells.", "xrefs" : [ "FlyBase:FBrf0064798" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004230", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "CL:0001658" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004231", "meta" : { "definition" : { "val" : "Retinal pigment cell that is part of an ommatidium. Each ommatidium has two primary pigment cells. These cells line the pseudocone and are in contact basally with the cone cells. They contain coarse granules of ommochrome screening pigment. 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Except at the margins of the eye, vertices alternate between those with tertiary pigment cells and those with bristles. Vertices at the margins all have tertiary pigment cells. These cells contain the red screening pigment pteridine, as well as ommochrome granules.", "xrefs" : [ "FlyBase:FBrf0064798" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004234", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "GO:0048770" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004235", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004236", "meta" : { "subsets" : [ 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"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004247", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004248", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004249", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "postpronotal bristle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : 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Usage in the Dictionary of Insect Morphology (ISBN:978-3-11-014898-5) is either equivalent to or broader than that of Ferris: 'The whole upper part of the usually winged meso- and metathorax resembling a shield.'" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004584", "meta" : { "definition" : { "val" : "A sclerotized process that projects from mesothoracic tergum into the wing hinge where it articulates with axillary sclerites.", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004585", "meta" : { "definition" : { "val" : "Anteriorly located process of the scutum that extends to into the wing hinge where it articulates with the 1st axillary sclerite. 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Its posterior boundary is the scutoscutellar suture (FBbt:00004602).", "xrefs" : [ "FlyBase:FBrf0007734", "FlyBase:FBrf0027793" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004588", "meta" : { "definition" : { "val" : "The most posterior part of the mesothoracic tergum. It lies partially under the scutellum with just a small crescent tergite posterior to the scutellum visible from above. 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It lies immediately posterior to the pleural suture and is mesothoracic in origin.", "xrefs" : [ "FlyBase:FBrf0007734", "ISBN:978-3-11-014898-5" ] }, "comments" : [ "Ferris, 1950, provides figures annotated with '" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pteropleurite", "xrefs" : [ "FlyBase:FBim0000793", "FlyBase:FBrf0007734", "FlyBase:FBrf0027793" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004594", "meta" : { "definition" : { "val" : "Ventral part of the thoracic epimeron.", "xrefs" : [ "ISBN:978-3-11-014898-5" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "hypopleurite" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004595", "meta" : { "definition" : { "val" : "A process that extends from the pleural suture (FBbt:00004603) into the wing hinge where it arches around the axillary pouch (FBbt:00004745) and articulate with the 2nd axillary sclerite on the dorsal side of the hinge.", "xrefs" : [ "FlyBase:FBrf0031004" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004596", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004597", "meta" : { "definition" : { "val" : "The dorsal part of the mesothoracic episternum. 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the longitudinal wing veins.", "xrefs" : [ "FBC:gg" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004766", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004767", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "radial-medial crossvein" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004768", "meta" : { 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The ovarian sheath sits on top (outside) of this.", "xrefs" : [ "FlyBase:FBrf0018806", "FlyBase:FBrf0019876", "FlyBase:FBrf0064777" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tunica propria" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004900", "meta" : { "definition" : { "val" : "Ovariole excluding the germarium.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004901", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004902", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004903", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#RD", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "FSC", "xrefs" : [ "FlyBase:FBrf0207075" ] }, { "pred" : "hasExactSynonym", "val" : "epithelial follicle stem cell", "xrefs" : [ "FlyBase:FBrf0207075" ] }, { "pred" : "hasRelatedSynonym", "val" : "SSC" }, { "pred" : "hasRelatedSynonym", "val" : "somatic stem cell" } ], "xrefs" : [ { "val" : "CL:0000441" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004904", "meta" : { "definition" : { "val" : "The cells that make up the inner lining of the ovariole.", "xrefs" : [ "FBC:gg" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#RD", "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "CL:0000477" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004905", "meta" : { "definition" : { "val" : "A follicle cell that migrates from the anterior pole of the egg chamber, between the nurse cells, to the anterior of the oocyte where they participate in formation of the micropyle. About 6-10 border cells per egg chamber migrate as a tightly associated cluster.", "xrefs" : [ "FlyBase:FBrf0064777" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#RD", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "border cell" } ], "xrefs" : [ { "val" : "CL:0000579" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004906", "meta" : { "definition" : { "val" : "A follicle cell that migrates from the dorso-anterior of the oocyte associates follicular epithelium, in between the nurse cells and the oocyte. These cells are precursors of the operculum.", "xrefs" : [ "FlyBase:FBrf0064777", "FlyBase:FBrf0135734" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#RD", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CMFC", "xrefs" : [ "FlyBase:FBrf0135734" ] }, { "pred" : "hasExactSynonym", "val" : "centripetal follicle cell", "xrefs" : [ "FlyBase:FBrf0064777" ] }, { "pred" : "hasExactSynonym", "val" : "inwardly migrating follicle cell" } ], "xrefs" : [ { "val" : "CL:0000671" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00004909" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004907", "meta" : { "definition" : { "val" : "Follicle cell at the anterior or posterior pole of the egg chamber. The anterior polar follicle cells become border follicle cells. The posterior polar follicle cells are precursors of the posterior aeropyle.", "xrefs" : [ "FlyBase:FBrf0021038" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#RD", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004908", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#RD", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "NCFC", "xrefs" : [ "FlyBase:FBrf0135734" ] }, { "pred" : "hasExactSynonym", "val" : "nurse cell follicle cell", "xrefs" : [ "FlyBase:FBrf0135734" ] }, { "pred" : "hasExactSynonym", "val" : "squamous follicle cell" }, { "pred" : "hasExactSynonym", "val" : "stretch follicle cell" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004910", "meta" : { "definition" : { "val" : "Cell that is part of the stalk connecting adjacent egg chambers in a vitellarium.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#RD", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "stalk cell", "xrefs" : [ "FlyBase:FBrf0007735" ] } ], "xrefs" : [ { "val" : "CL:0000674" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004911", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004912", "meta" : { "definition" : { "val" : "Epithelial tube that connects an ovary to the common oviduct. It is lined with a chitinous intima.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004913", "meta" : { "definition" : { "val" : "Epithelial tube that connects the lateral oviducts to the uterus. It is lined with a chitinous intima.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "main oviduct" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004914", "meta" : { "definition" : { "val" : "Small, bilaterally paired gland that lies behind the spermathecae and is connected to the uterus by a duct. The gland wall consists of a single layer of polygonal cells, each with a large vacuole and a minute acidophillic granule towards the gland lumen.", "xrefs" : [ "FlyBase:FBrf0141451", "FlyBase:FBrf0186027" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "parovarium", "xrefs" : [ "FlyBase:FBrf0186027" ] }, { "pred" : "hasRelatedSynonym", "val" : "ACgl", "xrefs" : [ "FlyBase:FBrf0186027" ] }, { "pred" : "hasRelatedSynonym", "val" : "colleterial gland", "xrefs" : [ "FlyBase:FBrf0186027" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004915", "meta" : { "definition" : { "val" : "A duct connecting a female accessory gland to the uterus, opening just behind the spermathecal ducts. It consists of a tube of thin epithelium lined with a thin chitinous intima, irregularly ringed with sharp ridges that project into the lumen.", "xrefs" : [ "FlyBase:FBrf0186027" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004916", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004917", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004918", "meta" : { "definition" : { "val" : "The anterior-most, cup-shaped region of the lateral oviduct.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004920", "meta" : { "definition" : { "val" : "The posterior end of the ovarian sheath, between the most posterior egg or egg chamber and the lateral oviduct.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004921", "meta" : { "definition" : { "val" : "A bilaterally paired, mushroom-shaped organ consisting of a capsule connected to the uterus by a slender duct. The capsule is an, inverted, double-walled bowl, the outer wall of which is a layer of cuboidal epithelium and the inner wall of which is chitinous intima secreted by the epithelium. After copulation, the lumen of the capsule is filled with a concentrically coiled mass of the spermatozoa.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "spermathecae", "xrefs" : [ "FlyBase:FBrf0128516" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004922", "meta" : { "definition" : { "val" : "A compactly coiled tube epithelial tube connected to the anterior end of the uterus. The tube is long (1.7-2.7 mm) and slender, consisting of a proximal duct around 22 micrometres wide with a narrow lumen (2.5 - 4.5 micrometres) and a wider distal half (around 28 micrometres) with a much larger lumen (12-19 micrometres). It is lined with a thin chitinous intima and surrounded by a nucleated sheath. The coil as a whole is surrounded by a sparsely nucleated peritoneal envelope. 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It opens into the uterus on its dorsal wall, just posterior to the mouth of the oviduct and close to the openings of the accessory gland ducts.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004924", "meta" : { "definition" : { "val" : "An elongate muscular pouch that is the site of egg fertilization. It is lined with a thin chitinous intima and is connected to the common oviduct anteriorly and the vulva posteriorly. The uterus holds a single egg at a time, with its micropyle near the opening of the seminal receptacle.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004925", "meta" : { "definition" : { "val" : "An elongate muscular pouch, the anterior part of which is the uterus, where eggs are fertilized, and the posterior part of which, the vulva is the copulatory orifice and site of exit for eggs.", "xrefs" : [ "FlyBase:FBrf0007735" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "genital chamber" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00004919" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004926", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004927", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0007735", "FlyBase:FBrf0034075" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FlyTed", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004928", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FlyTed", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004929", "meta" : { "definition" : { "val" : "Male germline cell and stem cell from which all other male germline cells develop. Male germline stem cells are part of the germinal proliferation center of the testis. They are arranged around a central hub made up of densely packed hub cells (apical cells), to which they are attached via adherens junctions.", "xrefs" : [ "FlyBase:FBrf0064778", "FlyBase:FBrf0190226" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FlyTed", "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "CL:0000087" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00004930", "meta" : { "definition" : { "val" : "Cell which is part of the hub of the germinal proliferation center. 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a neuron, containing the nucleus.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "soma" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005108", "meta" : { "definition" : { "val" : "The cytoplasm of the soma of a neuron, surrounding the nucleus (plural:perikarya).", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "comments" : [ "Made obsolete because of redundancy with GO cell component term. Please use GO:0043204 . ds060616." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005109", "meta" : { "comments" : [ "Made obsolete because of redundancy with GO cell component term. Please use GO:0030424 . ds060616." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005110", "meta" : { "definition" : { "val" : "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005111", "meta" : { "definition" : { "val" : "The arborization of dendrites, defined by the number, position, branching structure, density and stratification of its branches. Dense body. Synaptic ribbon at neuromuscular junction.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "dendritic arbor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005112", "meta" : { "definition" : { "val" : "The output region of a neuron, generally presynaptic but in insects often also locally postsynaptic. Typically containing large numbers of mitochondria in addition to presynaptic organelles.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "terminal" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005113", "meta" : { "definition" : { "val" : "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005114", "meta" : { "definition" : { "val" : "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.).", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005115", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005116", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005117", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005118", "meta" : { "comments" : [ "Made obsolete because of redundancy with GO cell component term. Please use GO:0008021 . ds060616." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005119", "meta" : { "comments" : [ "Made obsolete because of redundancy with GO cell component term. Please use GO:0043083 . ds060616." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005120", "meta" : { "comments" : [ "Made obsolete because of redundancy with GO cell component term. Please use GO:0045211. ds060616. 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A neuron with broad and extensive collaterals with terminals in adjacent columns is still classified as a columnar neuron under this definition. Other treatments have classified such neurons as tangential." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005130", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "CL:0000381" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005131", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DA neuron", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "dopamine neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005132", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dorso-lateral dopamine neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005133", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "serotonin neuron" } ], "xrefs" : [ { "val" : "CL:0000403" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005134", "meta" : { "definition" : { "val" : "Serotonergic neuron located ventrolaterally in each segment of the larval ventral nerve cord. In most segments there is a pair of these neurons on either side of the midline, but in T1 there are three either side, and in A8 just one either side.", "xrefs" : [ "FlyBase:FBrf0076116", "FlyBase:FBrf0100717" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ventral lateral serotonin neuron", "xrefs" : [ "FlyBase:FBrf0100717" ] }, { "pred" : "hasExactSynonym", "val" : "ventro-lateral serotonin neuron" }, { "pred" : "hasExactSynonym", "val" : "ventrolateral serotonergic neuron" }, { "pred" : "hasExactSynonym", "val" : "ventrolateral serotonin neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005135", "meta" : { "comments" : [ "Obsoleted due to difficulty in classifying nerves as motor versus sensory. Consider using motor neuron or nerve." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00005105" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00005123" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005136", "meta" : { "comments" : [ "Obsoleted due to difficulty in classifying nerves as motor versus sensory. Consider using sensory neuron or nerve." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00005105" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00005124" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005137", "meta" : { "definition" : { "val" : "Any of a number of aggregations of neurons, glial cells and their processes, and surrounded by a glial cell and connective tissue sheath (plural: ganglia).", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005138", "meta" : { "definition" : { "val" : "The neuron of a ganglion.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005139", "meta" : { "definition" : { "val" : "Multi-cell component structure of the central nervous system consisting largely of neuron projections (tracts and synaptic neuropil domains) and associated glial cells. This corresponds to the part of the CNS that is enclosed by the cortex.", "xrefs" : [ "FBC:BrainName" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "neuropil" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00007351" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005140", "meta" : { "definition" : { "val" : "A segmental subdivision of the nervous system.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005141", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rind" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005142", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "NMJ" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005143", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005144", "meta" : { "definition" : { "val" : "A supporting cell of the nervous system.", "xrefs" : [ "FBC:gg" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "CL:0000124" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005145", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "GP" }, { "pred" : "hasRelatedSynonym", "val" : "glial precursor cell" } ], "xrefs" : [ { "val" : "CL:0000340" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005146", "meta" : { "definition" : { "val" : "A neural stem cell that delaminates from the ectoderm and that buds off new ganglion mother cells during the course of development.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "NB" } ], "xrefs" : [ { "val" : "CL:0000031" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005147", "meta" : { "comments" : [ "Note - tangled hierarchy. ds070619." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "CL:0000468" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005148", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "CL:0000405" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005149", "meta" : { "definition" : { "val" : "Daughter cell formed through asymmetric division of a neuroblast, typically generating two postmitotic neurons.", "xrefs" : [ "FlyBase:FBrf0064795", "FlyBase:FBrf0138252" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "GMC" } ], "xrefs" : [ { "val" : "CL:0000469" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005150", "meta" : { "comments" : [ "Made obsolete because of redundancy with GO cell component term. Please use GO:0030426 . ds060616." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005151", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005152", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005153", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "outer perineural sheath cell" }, { "pred" : "hasExactSynonym", "val" : "perineurial sheath cell" }, { "pred" : "hasRelatedSynonym", "val" : "apical glial cell" }, { "pred" : "hasRelatedSynonym", "val" : "perineural cell" }, { "pred" : "hasRelatedSynonym", "val" : "perineurial glia" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005155", "meta" : { "definition" : { "val" : "Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#hidden_assertion", "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005156", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005157", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005158", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005159", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005160", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005161", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005162", "meta" : { "definition" : { "val" : "A light sensitive sense organ.", "xrefs" : [ "FBC:gg" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005163", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "SOC" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005164", "meta" : { "definition" : { "val" : "Precursor cell that gives rise to an external sensory organ.", "xrefs" : [ "FlyBase:FBrf0111371" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005165", "meta" : { "definition" : { "val" : "First-order precursor cell: mother of all the clonally related cells of an external sensory organ.", "xrefs" : [ "FlyBase:FBrf0049554", "FlyBase:FBrf0111371", "FlyBase:FBrf0158845" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "SOP" }, { "pred" : "hasRelatedSynonym", "val" : "SOPI" }, { "pred" : "hasRelatedSynonym", "val" : "founder cell" }, { "pred" : "hasRelatedSynonym", "val" : "sensory mother cell" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005166", "meta" : { "definition" : { "val" : "Second-order precursor cell. 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"http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005171", "meta" : { "definition" : { "val" : "The eo support cell that makes the socket that supports the innervated cuticular sensory structure of an eo-type sensillum.", "xrefs" : [ "FlyBase:FBrf0049554", "FlyBase:FBrf0089570", "FlyBase:FBrf0111371" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "socket cell" } ], "xrefs" : [ { "val" : "CL:0000372" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005172", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : 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"http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005181", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005182", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "hair" }, { "pred" : "hasRelatedSynonym", "val" : "setulae" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005183", "meta" : { "definition" : { "val" : "An eo-type sensillum in which the cuticular part typically has 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"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005185", "meta" : { "definition" : { "val" : "A eo-type sensillum in which the external part has the form of a minute projecting cone or peg.", "xrefs" : [ "FlyBase:FBrf0111704" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "basiconic sensillum" }, { "pred" : "hasRelatedSynonym", "val" : "peg" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005186", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "short s. basiconica", "xrefs" : [ "FlyBase:FBrf0141649" ] }, { "pred" : "hasExactSynonym", "val" : "short 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Stage 6 ends when the pole cells have adopted a dorsal (horizontal) position at the posterior. Duration at 25 degrees C: approximately 10 minutes (170-180 minutes after egg laying).", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005319", "meta" : { "definition" : { "val" : "Stage 7 begins when the pole cells have adopted a dorsal (horizontal) position at the posterior. Invagination of the anterior and posterior midgut and hindgut follows. The 'discoid plate' carrying the pole cells forms a pocket. Transverse furrows (dorsal folds) form on the dorsal surface. This stage ends when the anterior wall of the amnioproctodeal invagination starts moving anteriorly and the pole cells are no longer visible externally. Duration at 25 degrees C: approximately 10 minutes (180-190 minutes after egg laying).", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172", "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005320", "meta" : { "definition" : { "val" : "A fully elongated spermatid, undergoing individualisation.", "xrefs" : [ "FlyBase:FBrf0064778" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FlyTed", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Individuation stage spermatid" }, { "pred" : "hasRelatedSynonym", "val" : "late spermatid" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005321", "meta" : { "definition" : { "val" : "A collective term for stages 9-12.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005322", "meta" : { "definition" : { "val" : "Stage 8 starts with the rapid phase of germ band extension and ends with the beginning of mesodermal segmentation. By the end of this stage germ band extension has progressed to the point where the proctodeal opening is at about 60% egg length and the dorsal folds (transverse furrows) are no longer visible. Duration at 25 degrees C: approximately 30 minutes (190-220 minutes after egg laying).", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172", "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005323", "meta" : { "definition" : { "val" : "Stage 9 begins when mesodermal segmentation becomes (transiently) visible, and ends with the appearance of the stomodeal invagination slightly ventral to the anterior pole. Duration at 25 degrees C: approximately 40 minutes (220-260 minutes after egg laying).", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172", "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005324", "meta" : { "definition" : { "val" : "Stage 10 begins with the appearance of the stomodeal invagination, slightly ventral to the anterior pole. Periodic furrows appear in the embryonic epidermis around the middle of the stage. The germ band continues to extend, reaching its maximum extent of 75% egg length towards the end of the stage. The end of the stage is marked by the beginning of invagination of the tracheal placodes. Duration at 25 degrees: approximately 60 minutes (260-320 minutes after egg laying).", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172", "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005325", "meta" : { "definition" : { "val" : "Stage 11 begins with the invagination of the tracheal placodes. Para-segmental furrows form and segment boundary furrows become deep folds. Within the head, gnathal protuberances become apparent. The end of this stage is signalled by the appearance of a distinct cleft at the posterior pole of the embryo, which becomes detached from the vitelline membrane. This marks the beginning of germ band retraction. Duration at 25 degrees C: approximately 120 minutes (320-440 minutes after egg laying).", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172", "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Segmented germ band stage" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005326", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005327", "meta" : { "definition" : { "val" : "Germ band retraction. Stage 12 begins when germ-band retraction starts and ends when this process is complete so that the prospective anal plate occupies the posterior pole. During this stage the posterior and anterior hindgut primordia meet and fuse and the tracheal pits fuse to form the tracheal tree. Duration at 25 degrees C: approximately 120 minutes (320-440 minutes after egg laying).", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172", "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005328", "meta" : { "definition" : { "val" : "Stage 13 begins at the completion of germ-band retraction, when the prospective anal plate occupy the posterior pole. The dorsal ridge becomes apparent externally; the clypeolabrum retracts, leaving a triangular shaped gap at the anterior pole; the labium moves to the ventral midline. This stage ends when head involution begins. Duration at 25 degrees C:Approximately 60 minutes (560-620 minutes after egg laying).", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172", "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005329", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005330", "meta" : { "definition" : { "val" : "Stage 14 begins with the initiation of head involution. Closure of the midgut around the yolk and dorsal closure continue. Dorsal closure is 80% complete by the end of this stage. This stage ends with the appearance of the second midgut constriction. Duration at 25 degrees C: approximately 60 minutes (620-680 minutes after egg laying).", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005331", "meta" : { "definition" : { "val" : "A collective term for stages 13-15.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "contracted germ band embryo" }, { "pred" : "hasRelatedSynonym", "val" : "head involution embryo" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005332", "meta" : { "definition" : { "val" : "Stage 15 begins with the appearance of the second midgut constriction. During this stage the 1st and 3rd midgut constrictions form, dorsal closure is completed, and epidermal segmentation is accomplished. This stage ends when the intersegmental grooves can be distinguished at mid-dorsal level. Duration at 25 degrees C: approximately 100 minutes (680-780 minutes after egg laying).", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005333", "meta" : { "definition" : { "val" : "A collective term for stages 16 and 17.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005334", "meta" : { "definition" : { "val" : "Stage 16 begins when the intersegmental grooves can be distinguished at mid-dorsal level, and ends when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. During this stage the ventral nerve cord retracts to about 60% egg length. Duration at 25 degrees C: approximately 180 minutes (780-960 minutes after egg laying).", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005335", "meta" : { "definition" : { "val" : "Stage 17 begins when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. It lasts until hatching of the embryo (approximately 24 hours after egg laying), during which time much terminal differentiation occurs, the tracheal tree fills with air, so becoming completely visible, and the ventral nerve cord continues to retract. Duration at 25 degrees C: approximately 8 hours (960-1440 minutes after egg laying).", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005336", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005337", "meta" : { "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005338", "meta" : { "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005339", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L3" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005340", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0036849" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L3-1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005341", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur", "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L3-2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005342", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005343", "meta" : { "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L3-2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005344", "meta" : { "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005345", "meta" : { "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "bubble prepupa" }, { "pred" : "hasRelatedSynonym", "val" : "cryptocephalic pupa" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005346", "meta" : { "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005347", "meta" : { "definition" : { "val" : "Bouyant (approximately 6.5-12 hrs at 25'C). Prepupa floats on water (6.5-7 hours). Other events: lateral trachea become obscured (6.5-8 hours); everted wing and legs discs visible (translucent); bubble appears in posterior of puparium, displacing prepupa anteriorly.", "xrefs" : [ "FlyBase:FBrf0036849", "FlyBase:FBrf0049147" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005348", "meta" : { "definition" : { "val" : "Moving bubble/pupation (12-13.5 hours): Bubble within abdomen disappears; posterior bubble gradually displaced to anterior of puparium, while the (pre?)pupa withdraws to posterior end; imaginal head sac everted and mouthparts of larva expelled.", "xrefs" : [ "FlyBase:FBrf0036849", "FlyBase:FBrf0049147" ] }, "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005349", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005350", "meta" : { "comments" : [ "DEPRECATION WARNING" ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#deprecated" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005351", "meta" : { "definition" : { "val" : "Malpighian tubules migrating - enlarged initial segments of anterior pair of Malpighian tubules move from thorax to abdomen. 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A single neurite extends towards the ipsilateral mushroom body and bifurcates in the superior neuropils. One branch arborizes extensively within the mushroom body alpha and alpha' lobes, whilst the other branch arborizes extensively within the mushroom body beta, beta' and gamma lobe complexes. The cell processes also form a network of fibers and terminations in the mushroom body spur and anterior region of the pedunculus. There are no detectable projections to any other brain neuropil region (Waddell et al., 2000). Pre-synaptic terminals are found throughout the mushroom body lobes, being more pronounced in the alpha and beta lobes (Pitman et al., 2011). 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Neurotransmitter release was assessed by immunostaining to two different serotonergic antibodies: 5HT and DDC (Lee et al., 2011)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-DPM", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-DPM", "xrefs" : [ "FlyBrain_NDB:10445" ] }, { "pred" : "hasExactSynonym", "val" : "dorsal paired medial cell", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasRelatedSynonym", "val" : "DPM" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10445" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005781", "meta" : { "definition" : { "val" : "Blind sac that branches from the anterior-most region of the embryonic/larva midgut (ventriculus). There are four of these per animal. Their cells have a similar morphology to those of the midgut epithelium.", "xrefs" : [ "FlyBase:FBrf0007733" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "embryonic/larval gastric caecum" }, { "pred" : "hasExactSynonym", "val" : "larval gastric caecum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00001877" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005782", "meta" : { "definition" : { "val" : "Large cell in the middle region of the midgut that is cup-shaped with long microvilli. In animals fed on a copper rich diet, these cells accumulate copper.", "xrefs" : [ "FlyBase:FBrf0064792" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005783", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005784", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005785", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005786", "meta" : { "definition" : { "val" : "Epithelial tube with excretory and osmoregulatory roles connected, via a ureter, to the alimentary canal at the junction of the hindgut and midgut. There are two pairs of Malpighian tubules, the right pair lie at the anterior end of the abdomen, and the left pair at the posterior. Each tubule unites with its partner to form a common ureter which enters the alimentary canal at the junction of the hindgut and midgut (Wessing and Eichelberg, 1978).", "xrefs" : [ "FlyBase:FBrf0030988", "FlyBase:FBrf0160493", "ISBN:978-3-11-014898-5" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005787", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005788", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005789", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005790", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005791", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005792", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005793", "meta" : { "definition" : { "val" : "Proximal segment connecting a pair of Malpighian tubules to the alimentary canal. The ureter is surrounded by longitudinal and circular muscles.", "xrefs" : [ "FlyBase:FBrf0030988" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005794", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005795", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005796", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005797", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005798", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005799", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005800", "meta" : { "definition" : { "val" : "A neurosecretory organ forming part of the retrocerebral complex.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005801", "meta" : { "definition" : { "val" : "Bilaterally paired neuropil structure situated postero-dorsally in the protocerebrum that functions in olfactory associative learning and memory. The mushroom body is divided into: the calyx, which is closest to the cortex and receives sensory interneuron afferents; the pedunculus, which is a thick axon bundle extending from the calyx to the base of the lobes; and the mushroom body lobe system, which consists of a vertical branch composed of two intertwined lobes (alpha and alpha') and a medial branch consisting of three parallel lobes (beta, beta' and gamma).", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/golgi/mbbody/mbscheme.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/structures/mushroom.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName", "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "corpora pedunculata" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005802", "meta" : { "definition" : { "val" : "Region of the cortex that lies in a medial cleft dividing the left and right protocerebrum. It contains numerous large and small somata of neurosecretory and neuromodulatory neurons.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html" ] }, "comments" : [ "BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005803", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005804", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005805", "meta" : { "definition" : { "val" : "Visual organ of the larva. It consists of a dense cluster of 12 ciliated photoreceptor neurons.", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "comments" : [ "Location in ocular segment on basis of FBrf0075072." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Bolwig's organ" }, { "pred" : "hasExactSynonym", "val" : "embryonic Bolwig's organ" }, { "pred" : "hasExactSynonym", "val" : "embryonic visual system" }, { "pred" : "hasExactSynonym", "val" : "larval Bolwig's organ" }, { "pred" : "hasRelatedSynonym", "val" : "dorsocaudal pharyngeal sense organ" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00002643" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00005742" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00015250" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005806", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal sensillum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00004171" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005807", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005808", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005809", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0102484" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00005810", "meta" : { "definition" : { "val" : "Chiasm lying between the lamina and medulla of the optic lobe. 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This axon is presynaptic to lamina monopolar cells L1, L2 and L3 (at tetrad synapses), but also postsynaptic at (dyad) feedback synapses from L2 and L4 (Meinertzhagen and O'Neil, 1991).", "xrefs" : [ "FlyBase:FBrf0054529", "FlyBase:FBrf0064798" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "photoreceptor cell R1-6" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006008", "meta" : { "definition" : { "val" : "Eye photoreceptor cell whose rhabdomere is located in the centre of each ommatidium.", "xrefs" : [ "FlyBase:FBrf0064798" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006009", "meta" : { "definition" : { "val" : "Photoreceptor cell that forms the core of each ommatidium in the adult eye. Eight of these photoreceptors are arranged in each ommatidial core, bundled like the staves of a barrel. Each has a photosensitive rhabdomere that projects into the barrel cavity and adjacent supporting membrane, the stalk (Wolff and Ready, 1993). Each extends an axon into the optic lobe. 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It projects its axon below the ventrolateral tract, central lateral and central intermediate tracts and approaches the dorsal median tract from below, where it arborises extensively. It fasciculates with the contralateral Tv neuron and innervates the thoracic neurohemal organ. One Tv neuron is present (in a lateral 'ap' cluster) on each side of the ventral nerve cord in each of the 3 thoracic hemisegment of the larva. The arborisation at the dorsal median tract of the 3 pairs of Tv neurons overlaps and extends until the region between the first and second abdominal neuromeres (Benveniste et al., 1998; Marques et al., 2003; Santos et al., 2007).", "xrefs" : [ "FlyBase:FBrf0106026", "FlyBase:FBrf0167500", "FlyBase:FBrf0201188" ] }, "comments" : [ "The neuron is identified as neurosecretory because it expresses neuropeptides and innervates a neurohemal organ (Benveniste et al., 1998; Marques et al., 2003; Santos et al., 2007)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006020", "meta" : { "definition" : { "val" : "A cell that anchors the scolopidial dendritic cap cells of abdominal lateral pentascolopidial chordotonal organ lch5 to the cuticle. There are two of these per chordotonal organ of this type.", "xrefs" : [ "FlyBase:FBrf0180120" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "CA" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006021", "meta" : { "definition" : { "val" : "A cell that anchors the scolopidial ligament cell of abdominal lateral pentascolopidial chordotonal organ lch5 to the cuticle.", "xrefs" : [ "FlyBase:FBrf0180120" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "LA" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006022", "meta" : { "definition" : { "val" : "Daughter of pIIb; born during pupal stage; sibling of eo glial cell.", "xrefs" : [ "FlyBase:FBrf0111371" ] }, "comments" : [ "The reference paper (Gho et al., 1999) provides evidence for the existence of this intermediate stage between pIIb and the birth of the eo neuron in the wing mechanoreceptor development. There may be some question as to whether this can be generalized to all external sensory organs, but in the absence of evidence that the development of these organs is distinct I have applied this stage to all external sensory organ development. ds060308." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "pIIIb" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006023", "meta" : { "definition" : { "val" : "Glial cell associated with eo neuron. Daughter of pIIb; sibling of pIIIb.", "xrefs" : [ "FlyBase:FBrf0111371" ] }, "comments" : [ "Note - the term 'sheath cell' is problematic as it is sometimes used to refer to the thecogen cell and sometimes to the eo glial cell. ds060308." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sheath cell" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006024", "meta" : { "definition" : { "val" : "Neuron whose cell body is located most dorsally in the dorsal group of dendritic arborization neurons. It has long primary and secondary branches marked by spiked protrusions (1-20um) along most of its length (Grueber et al., 2002).", "xrefs" : [ "FlyBase:FBrf0148943", "FlyBase:FBrf0148966", "FlyBase:FBrf0183734", "http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ddaF", "http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html" ] }, "comments" : [ "There is some confusion in the literature between ddaF and ddaD (see Orgogozo and Grueber, 2005, for details). The nomenclature used here is according to Grueber et al., 2002. However other papers (notably Sweeney et al., 2002) refer to Grueber's ddaD as ddaF and vice-versa." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ddaD", "xrefs" : [ "FlyBase:FBrf0148943" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006025", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0148966" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006026", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0148966" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006027", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0148966" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006028", "meta" : { "definition" : { "val" : "A neuron of the larval brain that expresses eclosion hormone. A single pair of these neurons is present per larva. Their processes extend the entire length of the central nervous system and also to the corpora cardiaca portion of the ring gland via the nervus corporis cardiaci.", "xrefs" : [ "FlyBase:FBrf0058431", "FlyBase:FBrf0098847", "FlyBase:FBrf0134726" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "EH neuron" }, { "pred" : "hasExactSynonym", "val" : "Eclosion hormone neurosecretory neuron" }, { "pred" : "hasExactSynonym", "val" : "VM neuron", "xrefs" : [ "FlyBase:FBrf0058431", "FlyBase:FBrf0134726" ] }, { "pred" : "hasExactSynonym", "val" : "ventromedial neuron", "xrefs" : [ "FlyBase:FBrf0058431", "FlyBase:FBrf0134726" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00006029", "meta" : { "definition" : { "val" : "Region of dorsal mesothoracic disc that will develop into the wing blade. Its boundary is delimited by folds in the third instar disc epithelium. The cells in this region can also be distinguished from surrounding cells in the third instar disc by their basal accumulation of lipid granules. 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Its boundary with the anterior optic tubercle (AOTU) is demarcated by the extent of arborization of visual projection neurons within the AOTU and with the lateral horn by the extend of arborization of antennal lobe projection neurons.", "xrefs" : [ "FBC:BrainName", "VFB_vol:00045031", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html" ] }, "comments" : [ "Boundaries defined by BrainName (used to define this term) differ slightly from those defined for slpr in Otsuna and Ito, 2006." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "SLP", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasRelatedSynonym", "val" : "adult superior lateral protocerebrum" }, { "pred" : "hasRelatedSynonym", "val" : "slpr", "xrefs" : [ "FlyBase:FBrf0193607" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00007054" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00045031" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007055", "meta" : { "definition" : { "val" : "Medial synaptic neuropil domain of the superior neuropils that lies above the area flanked by the mushroom lobes, pedunculus, and calyx. It is separated from the pedunculus by the superior clamp. The fan-shaped body protrudes deeply into this neuropil, separating it into anterior and posterior regions.", "xrefs" : [ "FBC:BrainName", "FBC:VH-AJ", "VFB_vol:00007055", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "SMP", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "smpr", "xrefs" : [ "FlyBase:FBrf0212889" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00007055" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007056", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FBC:VH-AJ", "FlyBase:FBrf0193607", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html" ] }, "comments" : [ "Obsoleted in the processes of making the ontology consistent with BrainName. Mapping to BrainName domains is quite complicated. adult inferior lateral protocerebrum as defined by Otosuna and Ito (2006) overlaps BrainName regions: crepine; superior clamp; inferior clamp; superior intermediate protocerebrum; superior medial protocerebrum, bulb, antler (BrainName, 2011)." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00040037" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007057", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FBC:VH-AJ", "FlyBase:FBrf0193607", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html" ] }, "comments" : [ "Obsoleted in the processes of making the ontology consistent with BrainName. Mapping to BrainName domains is quite complicated. adult inferior lateral protocerebrum as defined by Otosuna and Ito (2006) overlaps BrainName regions: superior clamp; superior lateral protocerebrum; a small parts of the posterior ventrolateral protocerebrum (PVLP) and the posteriorlateral protocerebrum (SLP) (BrainName, 2011)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ilpr", "xrefs" : [ "FlyBase:FBrf0193607" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00007054" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00040048" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007058", "meta" : { "definition" : { "val" : "A mass of synaptic neuropil domains in the anterior brain, between the antennal lobe and the optic lobe.", "xrefs" : [ "FBC:BrainName", "FBC:VH-AJ", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem1.html" ] }, "comments" : [ "Currently some uncertainty about whether this is truly protocerebral - may actually be part of deuterocerebrum (Strausfeld has characterized it as such). This should be clarified as a result of Volker Hartenstein's lineage mapping work." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "VLP", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "ventro-lateral adult protocerebrum" }, { "pred" : "hasExactSynonym", "val" : "ventro-lateral protocerebrum" }, { "pred" : "hasExactSynonym", "val" : "vlpr" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007058" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007059", "meta" : { "definition" : { "val" : "Synaptic neuropil domain of the adult protocerebrum that receives extensive arborizations from visual projection neurons from the lobula and the medulla, projecting via the anterior optic tract. It protrudes from the anterior-most area of the ventro-lateral neuropils and is slightly detached from the ventro-lateral protocerebrum.", "xrefs" : [ "FBC:BrainName", "VFB_vol:00007059", "http://flybrain.neurobio.arizona.edu/Flybrain/html/module/1997/descdn/index.html" ] }, "comments" : [ "Otsuna and Ito (2006) suggest that the optic tubercle may be divided into three regions according to the density of arborizations. The medial-most (optu1) and lateral-most (optu3) contain dense arborizations of the Lcn10 neurons, whilst the area between these regions (optu2) is essentially devoid of the lobula columnar neurons." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#BrainName" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "AOTU", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "OTU", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "optic tubercle", "xrefs" : [ "FBC:BrainName" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00007059" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007060", "meta" : { "definition" : { "val" : "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "xrefs" : [ { "val" : "CARO:0001000" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007061", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FBC:VH-JR" ] }, "comments" : [ "Obsoleted in the processes of making the ontology consistent with BrainName. This term was never properly defined, so no precise replacement term can be suggested." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00003626" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007063", "meta" : { "definition" : { "val" : "One of a group of synaptic neuropil domains of the larval brain which are located ventral to the mushroom body and are grouped around the long axon tracts connecting the larval protocerebrum to the ventral nerve cord. This medially located compartment contacts the baso-anterior compartment (BA) posteriorly. The lateral cervical tract ascends through the center of this compartment.", "xrefs" : [ "FBC:VH", "FlyBase:FBrf0155900" ] }, "comments" : [ "Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval baso-posterior midbrain" }, { "pred" : "hasRelatedSynonym", "val" : "BPM" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007064", "meta" : { "definition" : { "val" : "A synaptic neuropil domain of the larval brain that forms during the third instar from a dorsal region of the centro-posterior lateral compartment by growth of a neuropil glial sheath across it.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Developmental relation to adult synaptic neuropil domains comes from a personal communication from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dorsal centro-posterior lateral synaptic neuropil domain" }, { "pred" : "hasExactSynonym", "val" : "larval lateral horn", "xrefs" : [ "FBC:VH" ] }, { "pred" : "hasRelatedSynonym", "val" : "CPLd" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007065", "meta" : { "definition" : { "val" : "A synaptic neuropil domain of the larval brain that is located dorsal to the medial lobe of the mushroom body, and which is separated from the dorso-posterior compartment by a neuropil glial sheath slightly posterior to the vertical lobe of the mushroom body.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Developmental relation to adult synaptic neuropil domains comes from a personal communication from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DA" }, { "pred" : "hasExactSynonym", "val" : "dorso-anterior synaptic neuropil compartment" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007066", "meta" : { "definition" : { "val" : "A synaptic neuropil domain of the larval brain that is located dorsal to the medial lobe of the mushroom body and which is separated from the dorso-anterior compartment by a neuropil glial sheath slightly posterior to the vertical lobe of the mushroom body. Axons from this compartment converge with those from the centro-posterior lateral compartment (CPL) to form the posterior transverse tract (PTT).", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Developmental relation to adult synaptic neuropil domains comes from a personal communication from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DP" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007067", "meta" : { "definition" : { "val" : "One of a group of synaptic neuropil domains of the larval brain which are located ventral to the mushroom body and are grouped around the long axon tracts connecting the larval protocerebrum to the ventral nerve cord. This medially located compartment contacts the baso-anterior compartment (BA) posteriorly.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. 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As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "BPL" }, { "pred" : "hasExactSynonym", "val" : "baso-posterior lateral" }, { "pred" : "hasExactSynonym", "val" : "baso-posterior lateral synaptic neuropil compartment" }, { "pred" : "hasExactSynonym", "val" : "larval ventro-lateral protocerebrum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007069", "meta" : { "definition" : { "val" : "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-posterior medial compartment by the peduncle.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Developmental relation to adult synaptic neuropil domain is a PC from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CPL" }, { "pred" : "hasExactSynonym", "val" : "centro-posterior lateral neuropil compartment" }, { "pred" : "hasExactSynonym", "val" : "larval inferior lateral protocerebrum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00007124" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007070", "meta" : { "definition" : { "val" : "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-lateral compartment by the peduncle, and from the centro-posterior intermediate compartment by the antenno-cerebral tract to which it is connected via a branch.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Developmental relation to adult synaptic neuropil domain is a PC from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "centro-posterior medial neuropil" }, { "pred" : "hasExactSynonym", "val" : "centro-posterior medial synaptic neuropil domain" }, { "pred" : "hasExactSynonym", "val" : "larval central complex" }, { "pred" : "hasRelatedSynonym", "val" : "CPM" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007071", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "baso-posterio lateral compartment of larval protocerebrum" }, { "pred" : "hasRelatedSynonym", "val" : "BPL" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FBbt:00007068" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007072", "meta" : { "definition" : { "val" : "A commissure located anterior and dorsal of the fan-shaped body which connects the two superior lateral protocerebrum synaptic neuropil domains.", "xrefs" : [ "ISBN:978-3-540-07343-7" ] }, "comments" : [ "From Strausfeld (ISBN:978-3-540-07343-7) pg 65 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH & WP." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DAC1" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007072" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007073", "meta" : { "definition" : { "val" : "Commissure located dorsal and anterior to of the fan-shaped body which connects the two superior medial protocerebrum neuropils.", "xrefs" : [ "ISBN:978-3-540-07343-7" ] }, "comments" : [ "From Strausfeld (ISBN:978-3-540-07343-7) pg 71,69 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH & WP." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DAC2" }, { "pred" : "hasExactSynonym", "val" : "fr m c" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007073" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007074", "meta" : { "definition" : { "val" : "Commissure connecting the lateral accessory lobes running in front of the ellipsoid body, dorsal and anterior of the fan-shaped body.", "xrefs" : [ "FBC:BrainName" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LAL commissure", "xrefs" : [ "FBC:BrainName" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "LALC", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "arched commissure of the ventral body", "xrefs" : [ "ISBN:978-3-540-07343-7" ] }, { "pred" : "hasExactSynonym", "val" : "inter-ventral body commissure" }, { "pred" : "hasExactSynonym", "val" : "lateral AL commissure" }, { "pred" : "hasExactSynonym", "val" : "ventral body commissure", "xrefs" : [ "FlyBase:FBrf0049409" ] }, { "pred" : "hasRelatedSynonym", "val" : "interventral body commissure" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007074" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-30T04:04:27Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00100353" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007075", "meta" : { "definition" : { "val" : "Commissure located dorsal and anterior of the fan-shaped body that connects the two lateral horns and the two ventrolateral protocerebrum compartments.", "xrefs" : [ "ISBN:978-3-540-07343-7", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html", "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DPC1" }, { "synonymType" : "http://purl.obolibrary.org/obo/fbbt#BRAIN_NAME_ABV", "pred" : "hasExactSynonym", "val" : "SAC", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "s ar c" }, { "pred" : "hasExactSynonym", "val" : "superior arch" }, { "pred" : "hasRelatedSynonym", "val" : "su ar c", "xrefs" : [ "FlyBase:FBrf0212841" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00007075" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007076", "meta" : { "definition" : { "val" : "Commissure located dorsal and anterior of the fan-shaped body which links the two superior medial and lateral protocerebra.", "xrefs" : [ "ISBN:978-3-540-07343-7" ] }, "comments" : [ "Could be a chiasm, rather than a commissure." ], "xrefs" : [ { "val" : "VFB:FBbt_00007076" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007077", "meta" : { "definition" : { "val" : "Commissure that is located dorsal and posterior of the fan-shaped body and passes near the lateral horn but does not actually enter the neuropil. 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It consists, in part, of a matrix of 'collagen-like' fibers and is invaded by tracheoles.", "xrefs" : [ "FlyBase:FBrf0058936", "ISBN:978-0-7204-7136-6" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007089", "meta" : { "definition" : { "val" : "The outermost cellular layer of the central nervous system, probably of mesodermal origin.", "xrefs" : [ "FlyBase:FBrf0057603", "FlyBase:FBrf0058936" ] }, "comments" : [ "Evidence of mesodermal origin comes from the observation that embryos lacking mesoderm lack this cell layer and the overlying neural lamella (Edwards et al., 1993))" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "apical glial cell", "xrefs" : [ "FlyBase:FBrf0206543" ] }, { "pred" : "hasExactSynonym", "val" : "perineural sheath" }, { "pred" : "hasRelatedSynonym", "val" : "neural lamella", "xrefs" : [ "PMID:21438012" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007090", "meta" : { "definition" : { "val" : "The outer two layers of glial cells that cover the central nervous system and the nerves. The outer layer is the perineurial sheath (sometimes referred to as the perineurial sheath outer layer); the inner layer is the sub-perineural glial sheath (sometimes referred to as the perineurial sheath inner layer).", "xrefs" : [ "FlyBase:FBrf0057603", "FlyBase:FBrf0191040", "ISBN:978-0-7204-7136-6" ] }, "comments" : [ "Some authors use this term only to refer to the double layer of cells covering the CNS (e.g. see Hartenstein and Jan, 1992), while other authors use it more broadly to include the covering of nerves (e.g.- see Banerjee et al., 2006). This ontology uses the term in its broad sense." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007091", "meta" : { "definition" : { "val" : "Inner cell layer of the perineurium. Probably not derived from the mesoderm (Edwards et al., 1994), these cells form an ion permeability barrier analogous to the blood-brain barrier of vertebrates (Hartenstein and Jan, 1992).", "xrefs" : [ "FlyBase:FBrf0057603", "FlyBase:FBrf0058936", "ISBN:978-0-7204-7136-6" ] }, "comments" : [ "That the sub-perineurial glial cells do not derive from the mesoderm is suggested by Edwards et al., (1994), in which they show the presence of these cells in delta (FBgn0000463) mutant embryos." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "barrier glial cell layer" }, { "pred" : "hasExactSynonym", "val" : "sub-perineurial glial sheath" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007092", "meta" : { "definition" : { "val" : "Ventral compartment of ventro-medial glomerulus 7.", "xrefs" : [ "FlyBase:FBrf0187305", "FlyBase:FBrf0192533" ] }, "comments" : [ "Note: This glomerulus not found in all samples when it was originally categorised. 'antennal lobe glomerulus 1' (see Couto et al., 1995) has been renamed to VM7v to comply with nomenclature used in Endo et al., 2007." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal lobe glomerulus 1", "xrefs" : [ "FlyBase:FBrf0187305" ] }, { "pred" : "hasExactSynonym", "val" : "antennal lobe glomerulus VM7v" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007092" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007093", "meta" : { "definition" : { "val" : "Glomerulus of the adult antennal lobe located on the same frontal plane as glomerulus DM3 (a landmark glomerulus). It lies dorsomedial to the posterior part of glomerulus V, and lateral to glomerulus VM6.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "comments" : [ "Note: This glomerulus not found in all samples when it was originally categorised, so may not be present in all animals." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal glomerulus 2" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007093" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007094", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007095", "meta" : { "comments" : [ "Made obsolete because no evidence is present in the literature that this or the ventral compartment exist, though a lateral compartment appears to exist, based on innervation patterns (see FBrf0211729). Consider using FBbt:00003968." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DL1d" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00003968" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007096", "meta" : { "comments" : [ "Made obsolete because no evidence is present in the literature that this or the ventral compartment exist, though a lateral compartment appears to exist, based on innervation patterns (see FBrf0211729). Consider using FBbt:00003968." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DL1v" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00003968" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007097", "meta" : { "definition" : { "val" : "Medial-most compartment of glomerulus DP1. It lies lateral to glomerulus DM1.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DP1m" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007097" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007098", "meta" : { "definition" : { "val" : "Lateral-most compartment of the DP1 glomerulus. It lies dorsomedial to the dorsal compartment of glomerulus DL2.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DP1l" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007098" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007099", "meta" : { "definition" : { "val" : "Large, lateral-most compartment of antennal lobe glomerulus VA1. It lies along the ventral side of the dorsal compartment of glomerulus VA1, and is dorsal to glomerulus VA5.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA1l" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007099" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007100", "meta" : { "definition" : { "val" : "Medial-most compartment of glomerulus VA1. It lies dorsomedial to glomerulus VA1d and lateral to glomerulus VA6.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA1m" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007100" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007101", "meta" : { "definition" : { "val" : "Large, dorsal-most compartment of glomerulus VA1. It lies ventral to glomerulus DA1, and dorsal to the lateral compartment of glomerulus VA1.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA1d" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007101" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007102", "meta" : { "definition" : { "val" : "Medial-most compartment of glomerulus VA7. It lies along the medial edge of the lateral compartment and dorsolateral to glomerulus VA2.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA7m" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007102" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007103", "meta" : { "definition" : { "val" : "Lateral-most compartment of glomerulus VA7. It lies along the lateral border of the medial compartment and dorsomedial to glomerulus VA5", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA7l" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007103" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007104", "meta" : { "definition" : { "val" : "Medial-most compartment of glomerulus VC3. It lies along the dorsomedial edge of the lateral compartment of glomerulus 3, and immediately dorsal to glomerulus VM6.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VC3m" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007104" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007105", "meta" : { "definition" : { "val" : "Lateral-most compartment of glomerulus VC3. It lies along the ventrolateral edge of the medial compartment of glomerulus VC3, and immediately dorsal to glomerulus VM7.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VC3l" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007105" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007106", "meta" : { "definition" : { "val" : "Anterior- and dorsal-most compartment of glomerulus VL2. It lies along the dorsoanterior edge of the posterior compartment, and ventrolateral to the dorsal compartment of glomerulus DL2.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VL2a" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007106" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007107", "meta" : { "definition" : { "val" : "Posterior- and ventral-most compartment of glomerulus VL2. It lies along the ventroposterior edge of the anterior compartment, and dorsolateral to glomerulus VL1.", "xrefs" : [ "FlyBase:FBrf0107836" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VL2p" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007107" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007108", "meta" : { "definition" : { "val" : "A columnar epithelial cell with distinct apical-basal polarity. The apical surface has microvilli with dense plaques at their tips. A cortical network (ring) of actin filaments underlies the apical surface, extends into the microvilli and is associated with a zonula adherens which encircles each cell. Below this is a broad region of pleated sheet type septate junctions connecting all lateral surfaces to adjacent cells. Plaque-like gap junctions occur mainly interspersed among septate junctions and, at a lower frequency, below them. Small, sparsely distributed hemidesmosomes attach these cells to the underlying basal lamina.", "xrefs" : [ "FlyBase:FBrf0064790" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007109", "meta" : { "definition" : { "val" : "Anterior compartment of an imaginal disc. During growth of the disc, cells of the anterior compartment do not cross into the posterior compartment. With the exception of the eye-antennal disc, the boundary between these two compartments is defined at the time of disc specification by a parasegment boundary running through the disc anlage.", "xrefs" : [ "FlyBase:FBrf0064789" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007110", "meta" : { "definition" : { "val" : "A region of developing tissue that is partially delimited by a compartment boundary. A compartment boundary is a sharp, stable boundary through a developing tissue that cells do not cross during development and that typically has no morphological correlate. The cells comprising the compartment form a population defined by their inability to cross the compartment boundary.", "xrefs" : [ "FlyBase:FBrf0151460" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007111", "meta" : { "definition" : { "val" : "Posterior compartment of an imaginal disc. During growth of the disc, cells of the posterior compartment do not cross into the anterior compartment. With the exception of the eye-antennal disc, the boundary between these two compartments is defined at the time of disc specification by a parasegment boundary running through the disc anlage.", "xrefs" : [ "FlyBase:FBrf0064789" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007112", "meta" : { "definition" : { "val" : "Region of the cortex overlying the mushroom body calyx. It is distinct from the surrounding cortex because it contains the cell bodies of Kenyon cells (globuli cell bodies) which are smaller than other neuronal cell bodies (soma) in the midbrain cortex.", "xrefs" : [ "http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/silver/horiz/hrsil22.html" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007113", "meta" : { "definition" : { "val" : "Neuroblast precursor of the Kenyon cells. The Kenyon cells of each mushroom body descend from just 4 mushroom body neuroblasts. These neuroblasts remain mitotically active throughout larval stages and into the late pupal stage.", "xrefs" : [ "FlyBase:FBrf0047815", "FlyBase:FBrf0092568" ] }, "comments" : [ "These neuroblasts are almost certainly identical with other named pro-cephalic neuroblasts in this ontology. They should be merged with these when suitable mappings become available. ds080219." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-Nb" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007114", "meta" : { "definition" : { "val" : "Superficial neuronal layer of the central nervous system, composed of glia and the cell bodies of neurons (soma). The cortex lies under the perineurium.", "xrefs" : [ "ISBN:978-0-7204-7136-6" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "perikaryal rind", "xrefs" : [ "FlyBase:FBrf0207181" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007115", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0047815" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "larval neuroblast" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007116", "meta" : { "definition" : { "val" : "The sum of all the developing presumptive components of a specific embryonic/larval system in an embryo.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007117", "meta" : { "definition" : { "val" : "Layer of glial cells which largely surrounds a region of neuropil in the central nervous system.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "glial septum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007118", "meta" : { "definition" : { "val" : "Small synaptic neuropil domain of the larval protocerebrum that is located anterior to the medial mushroom body lobe. It contains numerous fine axons which project medially and contribute to the anterior transverse tract (ATT) and the medial cervical tract (MCT).", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CA" }, { "pred" : "hasExactSynonym", "val" : "centro-anterior synaptic neuropil domain" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007119", "meta" : { "definition" : { "val" : "Tract of the larval brain connected to the central anterior synaptic neuropil domain.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007120", "meta" : { "definition" : { "val" : "Tract of the larval brain formed by axons converging from the dorso-posterior and centro-posterior lateral compartments. This tract runs medial along the neuropil glial sheath between the dorso-posterior compartment and the mushroom body calyx before it joins the dorsal posterior commissure.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PTT" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007121", "meta" : { "definition" : { "val" : "Commissure of the larval brain which is connected to (among others) the posterior transverse tract.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DPC" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007122", "meta" : { "definition" : { "val" : "A vertical axon tract of the larval brain connecting the dorso-posterior compartment (DP) to the subesophageal ganglion. The tract dives ventrally through the centro-posterior intermediate compartment (CPI) towards the posterior boundary of the basoposterior medial compartment where it joins the posterior cervical tract (PCT).", "xrefs" : [ "FlyBase:FBrf0155899", "FlyBase:FBrf0155900" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DPPT" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007125", "meta" : { "definition" : { "val" : "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-posterior medial compartment by the antenno-cerebral tract to which it is connected by a branch. Its axons project mainly into the posterior transverse tract and it receives a branch of the antenno-cerebral tract.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "centro-posterior intermediate synaptic neuropil compartment" }, { "pred" : "hasRelatedSynonym", "val" : "CPI" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007126", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0155900", "FlyBase:FBrf0192734" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval posterior cervical tract" }, { "pred" : "hasRelatedSynonym", "val" : "PCT" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007127", "meta" : { "definition" : { "val" : "Paired synaptic neuropil domain of the larval deuterocerebrum, located ventral to the mushroom body, that is the major target of innervation for axons carried by the antennal nerve. It is also connected to the antero-basal tract (ABT). Its posterior boundary contacts the basocentral (BC), basoposterior medial (BPM), basoposterior lateral and the basocervical (Bcv) synaptic neuropil domains.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "comments" : [ "Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "BA" }, { "pred" : "hasExactSynonym", "val" : "LAL", "xrefs" : [ "FlyBase:FBrf0147119" ] }, { "pred" : "hasExactSynonym", "val" : "antennal compartment" }, { "pred" : "hasExactSynonym", "val" : "baso-anterior synaptic neuropil domain", "xrefs" : [ "FlyBase:FBrf0155900" ] }, { "pred" : "hasExactSynonym", "val" : "larval antennal lobe" }, { "pred" : "hasRelatedSynonym", "val" : "larval olfactory lobe" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00007062" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007128", "meta" : { "definition" : { "val" : "Tract of the larval brain which is connected to the baso-anterior synaptic neuropil domain (BA; antennal compartment). This tract travels along the neuropil glial sheath which forms the boundary between baso-anterior (BA) and baso-central (BC) synaptic neuropil domains. The tract then turns dorsally to make the antennal root of the antenno-cerebral tract (ACT).", "xrefs" : [ "FlyBase:FBrf0155899", "FlyBase:FBrf0155900" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#larval_OF" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ABT" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007129", "meta" : { "definition" : { "val" : "One of a group of synaptic neuropil domains of the larval brain which are located ventral to the mushroom body and are grouped around the long axon tracts connecting the larval protocerebrum to the ventral nerve cord. This compartment contacts the baso-anterior compartment (BA) posteriorly and guides the medial cervical tract (MCT).", "xrefs" : [ "FBC:VH", "FlyBase:FBrf0155900" ] }, "comments" : [ "Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Bcv" }, { "pred" : "hasExactSynonym", "val" : "baso-cervical neuropil compartment" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007130", "meta" : { "definition" : { "val" : "An axon tract of the larval brain which is a branch of the lateral cervical tract. The branch point, at the center of the basal synaptic neuropil domain (the neuropil glial sheath between baso-posterio medial (BPM), baso-central (BC) and baso-posterior lateral (BPL)) compartments is known as the anterior hub. It crosses the baso-posterior lateral compartment (BPL) where it splays out into several terminal branches.", "xrefs" : [ "FlyBase:FBrf0155899", "FlyBase:FBrf0155900" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "BMPT" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007131", "meta" : { "definition" : { "val" : "A synaptic neuropil domain of the larval brain formed during larval stages by axons originating from the lobula primordium in the optic lobe and dorso-lateral protocerebrum. These axons form terminal branches beyond the borders of the centro-posterior lateral and baso-lateral compartments which then become enclosed by a glial sheath, forming this compartment.", "xrefs" : [ "FlyBase:FBrf0155900" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LOF" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007132", "meta" : { "definition" : { "val" : "Large, multi-lobed air sac of the dorsal adult thorax.", "xrefs" : [ "FlyBase:FBrf0064787" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007133", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007134", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0064787" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007135", "meta" : { "definition" : { "val" : "Primordium formed by tracheoblasts that bud from the tracheal branch which adheres to the wing disc during the late larval stage. During pupal stages this primordium forms an epithelial sac. Cells at the tip of this primordium show extensive protrusive activity - producing filopodia and lamellopodia - while maintaining epithelial integrity (including adherens junctions with their neighbors) .", "xrefs" : [ "FlyBase:FBrf0151893", "FlyBase:FBrf0190195" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007136", "meta" : { "definition" : { "val" : "Unit of spermatogenic differentiation consisting of a pair of cyst cells enclosing the developing germline cells.", "xrefs" : [ "FlyBase:FBrf0064778" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FlyTed", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007137", "meta" : { "definition" : { "val" : "A cyst of female germ cells interconnected by ring canals. 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These cells are born during metamorphosis.", "xrefs" : [ "FlyBase:FBrf0048551" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lamina cluster 1" } ], "xrefs" : [ { "val" : "VFB:FBbt_00007341" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-05-28T03:11:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007342", "meta" : { "definition" : { "val" : "Neuroblast located in two pairs, lateral to the M neuroblast, on the ventral border of each thoracic neuromere of the larva.", "xrefs" : [ "FlyBase:FBrf0047185" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : 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But it is also sometimes used to also refer to precursors of primary pigment cells (e.g. Larson et al., 2008), even though primary pigment cells are not inter-ommatidial cells." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "IPC", "xrefs" : [ "FlyBase:FBrf0103328" ] }, { "pred" : "hasExactSynonym", "val" : "interommatidial precursor cell" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-01T01:13:25Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007370", "meta" : { "definition" : { "val" : "Precursor of the primary pigment cells of the retina. From 10 hours after puparium formation, these cells are part of an unstructured pool of undifferentiated cells surrounding each developing ommatidial core. Around 20-23 hours APF, the primary pigment cell precursors leave this pool and become part of the ommatidia.", "xrefs" : [ "FlyBase:FBrf0103328" ] }, "comments" : [ "DISSAMBIGUATION: The term inter-ommatidial precursor cell is sometimes used to refer to precursors of primary pigment cells as well as secondary and tertiary pigment cells (e.g. Larson et al., 2008), even though primary pigment cells are not inter-ommatidial cells. This is not the case here." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-02T10:49:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007371", "meta" : { "definition" : { "val" : "A cell of the retina containing screening pigments that functions to screen photoreceptors from light leaking from adjacent ommatidia.", "xrefs" : [ "ISBN:978-0-521-57048-0" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-02T11:16:03Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007372", "meta" : { "definition" : { "val" : "Pigment granule found in retinal cells.", "xrefs" : [ "FlyBase:FBrf0017931" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-02T05:35:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007373", "meta" : { "definition" : { "val" : "Sense organ that is internal to the animal - i.e. having no part that is part of the cuticle.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-19T02:27:41Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007374", "meta" : { "definition" : { "val" : "First born ganglion mother cell born of neuroblast NB7-3.", "xrefs" : [ "FlyBase:FBrf0064795", "FlyBase:FBrf0090460", "FlyBase:FBrf0138252", "http://www.neuro.uoregon.edu/doelab/lineages/texts/73 description.html" ] }, "comments" : [ "In the wildtype neuroblast NB7-3, only GMC 7-3a and its progeny are both hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent ganglion mother cells do not express hb (Isshiki et al., 2001)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ganglion mother cell GMC7-3a" }, { "pred" : "hasRelatedSynonym", "val" : "GMC-1", "xrefs" : [ "FlyBase:FBrf0138252" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-02T05:06:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007375", "meta" : { "definition" : { "val" : "Second born ganglion mother cell of neuroblast NB7-3.", "xrefs" : [ "FlyBase:FBrf0064795", "FlyBase:FBrf0090460", "FlyBase:FBrf0138252", "http://www.neuro.uoregon.edu/doelab/lineages/texts/73 description.html" ] }, "comments" : [ "In the wildtype neuroblast NB7-3, only GMC 7-3a and its progeny are both hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent ganglion mother cells do not express hb (Isshiki et al., 2001)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ganglion mother cell GMC 7-3b" }, { "pred" : "hasRelatedSynonym", "val" : "GMC-2", "xrefs" : [ "FlyBase:FBrf0138252" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-02T05:06:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007376", "meta" : { "definition" : { "val" : "Third born ganglion mother cell of neuroblast NB7-3.", "xrefs" : [ "FlyBase:FBrf0064795", "FlyBase:FBrf0090460", "FlyBase:FBrf0138252", "http://www.neuro.uoregon.edu/doelab/lineages/texts/73 description.html" ] }, "comments" : [ "In the wildtype neuroblast NB7-3, only GMC 7-3a and its progeny are both hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent ganglion mother cells do not express hb (Isshiki et al., 2001)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ganglion mother cell GMC 7-3c" }, { "pred" : "hasRelatedSynonym", "val" : "GMC-3", "xrefs" : [ "FlyBase:FBrf0138252" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-02T05:06:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007377", "meta" : { "definition" : { "val" : "Commissure connecting left and right halves of the embryonic/larval tritocerebrum.", "xrefs" : [ "FlyBase:FBrf0174355" ] }, "comments" : [ "Might better be considered first commissure of the VNC?" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-02T05:06:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007378", "meta" : { "definition" : { "val" : "Commissure connecting left and right halves of the embryonic/larval protocerebrum.", "xrefs" : [ "FlyBase:FBrf0174355" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-02T05:06:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007379", "meta" : { "definition" : { "val" : "Connective that connects the larval frontal ganglion with the larval brain. It receives lateral projections from the frontal ganglion.", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-02T05:06:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007380", "meta" : { "definition" : { "val" : "Small, sharply pointed, non-innervated cuticular process.", "xrefs" : [ "ISBN:978-3-11-014898-5" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-04T04:53:18Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007381", "meta" : { "definition" : { "val" : "Small, curved, pointed, non-innervated cuticular process of the maxillary palpus. These spinules are distributed throughout the surface of the palps.", "xrefs" : [ "FlyBase:FBrf0091407" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-04T05:02:25Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007383", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron whose dendrite innervates only a single glomerulus in either one or both antennal lobes.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "uniglomerular PN" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-11T08:17:44Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007384", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron whose dendritic arbor(s) innervate multiple glomeruli in one or both antennal lobes.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "polyglomerular antennal lobe projection neuron", "xrefs" : [ "FlyBase:FBrf0211729" ] }, { "pred" : "hasRelatedSynonym", "val" : "multiglomerular PN" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-11T08:30:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007385", "meta" : { "definition" : { "val" : "Mushroom body calyx of the mature adult mushroom body.", "xrefs" : [ "FBC:SPR" ] }, "xrefs" : [ { "val" : "VFB:FBbt_00007385" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-11T08:58:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007386", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult odorant receptor neuron" }, { "pred" : "hasRelatedSynonym", "val" : "adult ORN" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-09T05:03:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007387", "meta" : { "definition" : { "val" : "Uniglomerular projection neuron descended from the ventral AL neuroblast.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "uniglomerular vPN" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-12T11:31:18Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007388", "meta" : { "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "larval olfactory neuron" }, { "pred" : "hasExactSynonym", "val" : "larval ORN" }, { "pred" : "hasExactSynonym", "val" : "larval OSN" }, { "pred" : "hasExactSynonym", "val" : "larval odorant receptor neuron" }, { "pred" : "hasExactSynonym", "val" : "larval olfacory sensory neuron" }, { "pred" : "hasExactSynonym", "val" : "larval olfactory receptor neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-09T05:03:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007389", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or85b (FBgn0037590) and Or98b (FBgn0039582). 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Both axons and dendrites of these neurons are extensively remodelled during metamorphosis.", "xrefs" : [ "FlyBase:FBrf0183938" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "persistent projection neuron" }, { "pred" : "hasExactSynonym", "val" : "PPN", "xrefs" : [ "FlyBase:FBrf0183938" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00007456" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00007457", "meta" : { "definition" : { "val" : "Larval neurosecretory neuron that secretes prothoracicotropic hormone (FBgn0013323; McBrayer et al., 2007) and innervates the prothoracic gland. The somata of these neurons (2 per hemisphere) lie in the cortex of the lateral protocerebrum. 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It is distinguishable from at4 by its odor response profile (de Bruyne and Baker, 2008) and the identity of the ORNs that innervate it (2a, 19a/b and 43a; Cuoto et al., 2005; de Bruyne and Baker, 2008).", "xrefs" : [ "FlyBase:FBrf0187305", "PMID:18535862" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067001", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or2a (FBgn0023523). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA4 medial compartment and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA4 medial compartment. Its dendrite transduces signals from trichoid sensillum at3.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or2a)", "xrefs" : [ "FlyBrain_NDB:10397" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at3A", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or2a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or2a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DA4m" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10397" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067002", "meta" : { "definition" : { "val" : "A large olfactory basiconic sensillum of the antenna, innervated by 2 ORNs. It is distinguishable from ab3 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (59b and 85a/33b; Cuoto et al., 2005).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305" ] }, "comments" : [ "Based on its size and the number of innervating ORNS, this is likely to correspond to LB-I (FBbt:00007355) or LB-II2 (FBbt:00007356) of Shanbhag et al., 1999, but it is not clear which." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal large basiconic sensillum ab2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067003", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or59b (FBgn0034865). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM4. Its dendrite transduces signals from antennal basiconic sensillum ab2.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or59b)", "xrefs" : [ "FlyBrain_NDB:10410" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or59b" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or59b" }, { "pred" : "hasRelatedSynonym", "val" : "ORN ab2A", "xrefs" : [ "FlyBase:FBrf0179238" ] }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DM4" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10410" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067004", "meta" : { "definition" : { "val" : "Thin antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from ab5 - ab10 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it 7a and 56/33a; Cuoto et al., 2005).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305", "PMID:18535862" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067005", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or7a (FBgn0030016). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL5 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL5. Its dendrite transduces signals from antennal basiconic sensillum ab4.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or7a)", "xrefs" : [ "FlyBrain_NDB:10420" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab4A", "xrefs" : [ "FlyBase:FBrf0179238" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or7a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or7a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DL5" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10420" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067006", "meta" : { "definition" : { "val" : "Basiconic olfactory sensillum of maxillary palp that is innervated by the dendrites of two ORNs. It is distinguishable from pb1 and pb2 by its odor response profile (Goldman et al., 2005) and the identity of the ORNs that innervate it (59c and 85d; Cuoto et al., 2005; Goldman et al., 2005).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067007", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or59c (FBgn0034866). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus 1 and the other fasciculating with the antennal commissure and innervating the contralateral `antennal lobe glomerulus VM7v` (FBbt:00007092). Its dendrite transduces signals from `maxillary palp basiconic sensillum pb3` (FBbt:00067006).", "xrefs" : [ "FlyBase:FBrf0184216", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or59c)", "xrefs" : [ "FlyBrain_NDB:10411" ] }, { "pred" : "hasExactSynonym", "val" : "ORN pb3A", "xrefs" : [ "FlyBase:FBrf0184216" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or59c" }, { "pred" : "hasExactSynonym", "val" : "olfactory receptor neuron Or59c" }, { "pred" : "hasRelatedSynonym", "val" : "olfactory receptor neuron 1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10411" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067008", "meta" : { "definition" : { "val" : "Small antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from other small bidendritic ab sensilla by its odor response profile (de Bruyne and Baker, 2008) and the identity of the ORNs that innervate it (43b and 9a).", "xrefs" : [ "FlyBase:FBrf0187305", "PMID:18535862" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067009", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or9a (FBgn0030204). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM3. Its dendrite transduces signals from antennal basiconic sensillum ab8.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "comments" : [ "Antennal basiconic sensillum ab4 is bidendritic. According to Hallem et al., 2004 (FBrf0179238), adult ORN 43b corresponds to the functionally defined ORN ab8A. We can therefore deduce that adult ORN 9a corresponds to ORN ab8B." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or9a)", "xrefs" : [ "FlyBrain_NDB:10430" ] }, { "pred" : "hasExactSynonym", "val" : "ORN pb9A", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or9a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or9a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VM3" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10430" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067010", "meta" : { "definition" : { "val" : "Olfactory trichoid sensillum of antennal segment 3 that is innervated by 3 ORNs. It is distinguishable from at3 by its odor response profile (de Bruyne and Baker, 2008) and the identity of the ORNs that innervate it (47b, 65a/b/c, 88a; Cuoto et al., 2005; de Bruyne and Baker, 2008).", "xrefs" : [ "FlyBase:FBrf0187305", "PMID:18535862" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067011", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or65 (Or65a ; FBgn0041625, Or65b ; FBgn0041624, Or65c ; FBgn0041623). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL3. Its dendrite transduces signals from antennal trichoid sensillum at4.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or65a/b/c)", "xrefs" : [ "FlyBrain_NDB:10412" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at4B", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or65" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or65" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DL3" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10412" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067012", "meta" : { "definition" : { "val" : "A large olfactory basiconic sensillum of the antenna, innervated by 4 ORNs.", "xrefs" : [ "FlyBase:FBrf0137067", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067013", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or10a (FBgn0030298). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL1. Its dendrite transduces signals from antennal basiconic sensillum ab1.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or10a)", "xrefs" : [ "FlyBrain_NDB:10392" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab1D", "xrefs" : [ "FlyBase:FBrf0208960" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or10a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or10a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DL1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10392" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067014", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DC1. This neuron is born from the 11th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0183938", "FlyBase:FBrf0203179", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g004" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g004." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DC1 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067014" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067015", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067016", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or13a (FBgn0030715). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DC2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DC2. Its dendrite transduces signals from antennal intermediate sensillum ai1.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or13a)", "xrefs" : [ "FlyBrain_NDB:10393" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ai1B", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or13a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or13a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DC2" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10393" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067017", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DM3. Neurons of this class are born during the 18th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0183938", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g004" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g004." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DM3 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067017" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067018", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or19a (FBgn0041626) and Or19b (FBgn0062565). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DC1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DC1. Its dendrite transduces signals from antennal trichoid sensillum at3.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or19a/b)", "xrefs" : [ "FlyBrain_NDB:10394" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at3B", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or19" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or19" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DC1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10394" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067019", "meta" : { "definition" : { "val" : "Small antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from other small bidendritic ab sensilla by its odor response profile (de Bruyne and Baker, 2008) and the identity of the ORNs that innervate it (49a/85f and 67a).", "xrefs" : [ "FlyBase:FBrf0187305", "PMID:18535862" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Ab10", "xrefs" : [ "PMID:18535862" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067020", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or67a (FBgn0036009). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM6 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM6. Its dendrite transduces signals from antennal basiconic sensillum ab10.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "comments" : [ "Antennal basiconic sensillum ab4 is bidendritic. According to Hallem et al., 2004 (FBrf0179238), adult ORN 49a corresponds to the functionally defined ORN ab10A. We can therefore deduce that adult ORN 67a corresponds to ORN ab10B." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or67a)", "xrefs" : [ "FlyBrain_NDB:10413" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab10B", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or67a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or67a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DM6" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10413" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067021", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DP1m. This is the first neuron born from the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DP1m adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067021" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067022", "meta" : { "definition" : { "val" : "Small antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from other small bidendritic ab sensilla the identity of the ORNs that innervate it (69a and 67b).", "xrefs" : [ "FlyBase:FBrf0187305", "PMID:18535862" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067023", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or67b (FBgn0036019). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA3. Its dendrite transduces signals from antennal basiconic sensillum ab9.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or67b)", "xrefs" : [ "FlyBrain_NDB:10414" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab9B", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or67b" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or67b" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VA3" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10414" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067024", "meta" : { "definition" : { "val" : "A large olfactory basiconic sensillum of the antenna, innervated by 2 ORNs. It is distinguishable from ab2 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (22 and 85b; Cuoto et al., 2005; de Bruyne and Baker, 2008).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305", "PMID:18535862" ] }, "comments" : [ "Based on its size and the number of innervating ORNS, this is likely to correspond to LB-I (FBbt:00007355) or LB-II2 (FBbt:00007356) of Shanbhag et al., 1999, but it is not clear which." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Ab3" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067025", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or22a (FBgn0026398) and Or22b (FBgn0026397). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM2. Its dendrite transduces signals from antennal basiconic sensillum ab3.", "xrefs" : [ "FlyBase:FBrf0159257", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or22a/b)", "xrefs" : [ "FlyBrain_NDB:10395" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab3A", "xrefs" : [ "FlyBase:FBrf0159257", "FlyBase:FBrf0191741" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or22" }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or22b", "xrefs" : [ "FlyBase:FBrf0179238" ] }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or22a" }, { "pred" : "hasRelatedSynonym", "val" : "adult ORN Or22a", "xrefs" : [ "FlyBase:FBrf0159257" ] }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DM2" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10395" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067026", "meta" : { "definition" : { "val" : "Small antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from ab5 - ab10 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (49b and 98a; Cuoto et al., 2005; de Bruyne and Baker, 2008).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305", "PMID:18535862" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067027", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or67c (FBgn0036078). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VC4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VC4. Its dendrite transduces signals from antennal basiconic sensillum ab7.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or67c)", "xrefs" : [ "FlyBrain_NDB:10415" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab7B", "xrefs" : [ "FlyBase:FBrf0179238" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or67c" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or67c" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VC4" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10415" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067028", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the embryonic born ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL5. This neuron is born from the 16th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0183938", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g004" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g004." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DL5 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067028" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067030", "meta" : { "definition" : { "val" : "Mono-innervated olfactory trichoid sensillum of antennal segment 3.", "xrefs" : [ "FlyBase:FBrf0187305", "PMID:18535862" ] }, "comments" : [ "May be identical to antennal sensillum trichodeum T1 (FBbt:00007348) of Shanbhag et al., 1999." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067031", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses OR67d (FBgn0036080). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA1. Its dendrite transduces signals from antennal trichoid sensillum at1.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "comments" : [ "Work by Fishilevich and Vosshall (FBrf0187306, 2005), suggested that some neurons of the class also innervated glomerulus VA2, but subsequent work showed this result to be an due to expression of the Or67d-Gal4 line used in a different ORN class (FBrf0201681 == Fishilevich and Vosshall, 2007)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or67d)", "xrefs" : [ "FlyBrain_NDB:10416" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at1A", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or67d" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron OR67d" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DA1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10416" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067032", "meta" : { "definition" : { "val" : "Olfactory trichoid sensillum of antennal segment 3 that is innervated by two ORNs.", "xrefs" : [ "FlyBase:FBrf0187305", "PMID:18535862" ] }, "comments" : [ "May be identical to antennal sensillum trichodeum T2 (FBbt:00007348) of Shanbhag et al., 1999." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067033", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or23a (FBgn0026395). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA3. Its dendrite transduces signals from antennal trichoid sensillum at2.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or23a)", "xrefs" : [ "FlyBrain_NDB:10396" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at2A", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or23a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or23a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DA3" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10396" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067034", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or69a (FBgn0041622). It innervates antennal lobe glomerulus D in both antennal lobes: its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus D and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus D. Its dendrite transduces signals from antennal basiconic sensillum ab9.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or69aA/aB)", "xrefs" : [ "FlyBrain_NDB:10417" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab9A", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or69a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron D" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron OR69a" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10417" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00067037" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067035", "meta" : { "definition" : { "val" : "Basiconic olfactory sensillum of maxillary palp that is innervated by the dendrites of two ORNs. It is distinguishable from pb1 and pb3 by its odor response profile (Goldman et al., 2005) and the identity of the ORNs that innervate it (85e/33c and 46a; Cuoto et al., 2005; Goldman et al., 2005).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067036", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or33c (FBgn0026390) and Or85e (FBgn0026399) . Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VC1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VC1. Its dendrite transduces signals from maxillary palp basiconic sensillum pb2.", "xrefs" : [ "FlyBase:FBrf0184216", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or33c/85e)", "xrefs" : [ "FlyBrain_NDB:10398" ] }, { "pred" : "hasExactSynonym", "val" : "ORN pb2A", "xrefs" : [ "FlyBase:FBrf0184216" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or33c" }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or33c/85e" }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or85e" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or33c" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or85e" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VC1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10398" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00067053" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067038", "meta" : { "definition" : { "val" : "Coeloconic olfactory sensillum of the antenna that is innervated by three olfactory receptor neurons (ORN). It is distinguishable from ac2, ac3 and ac4 by its odor response profile (Yao et al., 2005) and the identity of the ORNs that innervate it. The sensilla are present in the anterior antennal surface just ventral to the arista (Benton et al., 2009).", "xrefs" : [ "FlyBase:FBrf0187906", "FlyBase:FBrf0206496" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067039", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses the the Odorant receptor (Or) 35a (FBgn0028946) and the co-receptor Ionotropic receptor (Ir) 76b (FBgn0036937). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VC3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VC3 (Couto et al., 2005). Its dendrite transduces signals from antennal coeloconic sensillum ac3 (Benton et al., 2009).", "xrefs" : [ "FlyBase:FBrf0187305", "FlyBase:FBrf0187906", "FlyBase:FBrf0206496" ] }, "comments" : [ "This neuron was directly shown to be olfactory by electrophysiological recordings of a single neuron (Benton et al, 2009). Based on gene expression, Couto et al., 2005 infer that this ORN transduces signals from ac1, not ac3 as claimed by Yao et al., 2005 and Benton et al., 2005." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ORN ac3", "xrefs" : [ "FlyBase:FBrf0206496" ] }, { "pred" : "hasBroadSynonym", "val" : "Or35a" }, { "pred" : "hasExactSynonym", "val" : "ORN (Or35a)", "xrefs" : [ "FlyBrain_NDB:10399" ] }, { "pred" : "hasExactSynonym", "val" : "ORN Or35a", "xrefs" : [ "FlyBase:FBrf0206496" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or35a" }, { "pred" : "hasRelatedSynonym", "val" : "ionotropic receptor neuron VC3" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VC3" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067040", "meta" : { "definition" : { "val" : "Basiconic olfactory sensillum of maxillary palp that is innervated by the dendrites of two ORNs. It is distinguishable from pb2 and pb3 by its odor response profile (Goldman et al., 2005) and the identity of the ORNs that innervate it (42a and 71a; Cuoto et al., 2005; Goldman et al., 2005).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067041", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or71a (FBgn0036474). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VC2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VC2. Its dendrite transduces signals from maxillary palp basiconic sensillum pb1.", "xrefs" : [ "FlyBase:FBrf0184216", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or71a)", "xrefs" : [ "FlyBrain_NDB:10419" ] }, { "pred" : "hasExactSynonym", "val" : "ORN pb1B", "xrefs" : [ "FlyBase:FBrf0184216" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or71a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or71a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VC2" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10419" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067042", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or42a (FBgn0033041). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM7 dorsal compartment and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM7 dorsal compartment. Its dendrite transduces signals from maxillary palp basiconic sensillum pb1 (Couto et al., 2005; Endo et al., 2007).", "xrefs" : [ "FlyBase:FBrf0184216", "FlyBase:FBrf0187305", "FlyBase:FBrf0192533" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or42a)", "xrefs" : [ "FlyBrain_NDB:10400" ] }, { "pred" : "hasExactSynonym", "val" : "ORN pb1A", "xrefs" : [ "FlyBase:FBrf0184216" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or42a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or42a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VM7" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10400" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067043", "meta" : { "definition" : { "val" : "Thin antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from ab5 - ab10 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (82a and 47a; Cuoto et al., 2005; de Bruyne and Baker, 2008).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305", "PMID:18535862" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067044", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or82a (FBgn0041621). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA6 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA6. Its dendrite transduces signals from antennal basiconic sensillum ab5.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or82a)", "xrefs" : [ "FlyBrain_NDB:10421" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab5A", "xrefs" : [ "FlyBase:FBrf0179238" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or82a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or82a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VA6" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10421" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067046", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or42b (FBgn0033043). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM1. Its dendrite transduces signals from antennal basiconic sensillum ab1.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or42b)", "xrefs" : [ "FlyBrain_NDB:10401" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab1A", "xrefs" : [ "FlyBase:FBrf0208960" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or42b" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or42b" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DM1" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10401" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067047", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or83c (FBgn0037399). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DC3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DC3. Its dendrite transduces signals from antennal trichoid sensillum at2.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or83c)", "xrefs" : [ "FlyBrain_NDB:10422" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at2B", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or83c" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or83c" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DC3" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10422" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067048", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or43a (FBgn0026389). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA4l and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA4l. Its dendrite transduces signals from antennal trichoid sensillum at3.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or43a)", "xrefs" : [ "FlyBrain_NDB:10402" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at3C", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or43a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DA4l" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron Or43a" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10402" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067049", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or85a (FBgn0037576). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM5 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM5. Its dendrite transduces signals from antennal basiconic sensillum ab2.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or85a)", "xrefs" : [ "FlyBrain_NDB:10423" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab2B", "xrefs" : [ "FlyBase:FBrf0208960" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or85a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or85a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DM5" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10423" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067050", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or43b (FBgn0026393). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM2. Its dendrite transduces signals from antennal basiconic sensillum ab8.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or43b)", "xrefs" : [ "FlyBrain_NDB:10403" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab8A", "xrefs" : [ "FlyBase:FBrf0179238" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or43b" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or43b" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VM2" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10403" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067051", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or85d (FBgn0037594). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA4. Its dendrite transduces signals from maxillary palp basiconic sensillum pb3.", "xrefs" : [ "FlyBase:FBrf0184216", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or85d)", "xrefs" : [ "FlyBrain_NDB:10426" ] }, { "pred" : "hasExactSynonym", "val" : "ORN pb3AB", "xrefs" : [ "FlyBase:FBrf0184216" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or85d" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or85d" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VA4" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10426" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067052", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or46a (FBgn0026388). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA7l and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA7 lateral compartment. Its dendrite transduces signals from maxillary palp basiconic sensillum pb2.", "xrefs" : [ "FlyBase:FBrf0184216", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or46aA)", "xrefs" : [ "FlyBrain_NDB:10404" ] }, { "pred" : "hasExactSynonym", "val" : "ORN pb2B", "xrefs" : [ "FlyBase:FBrf0184216" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or46a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or46a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VA7l" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10404" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067054", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or47a (FBgn0026386). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM3. Its dendrite transduces signals from basiconic sensillum ab5.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or47a)", "xrefs" : [ "FlyBrain_NDB:10405" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab5B", "xrefs" : [ "FlyBase:FBrf0179238" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or47a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or47a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron DM3" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10405" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067055", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or49a (FBgn0033727) and 85f (FBgn0037685). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL4. Its dendrite transduces signals from basiconic sensillum ab10.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "odorant receptor neuron DL4", "xrefs" : [ "FlyBase:FBrf0187305" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab10A", "xrefs" : [ "FlyBase:FBrf0179238", "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or49a/85f" }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or85f/49a" }, { "pred" : "hasExactSynonym", "val" : "adult olfactory receptor neuron Or49a" }, { "pred" : "hasExactSynonym", "val" : "adult olfactory receptor neuron Or85f" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or49a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or85f" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00067058" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067056", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or47b (FBgn0026385). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA1v and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA1v. Its dendrite transduces signals from antennal trichoid sensillum at4.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "odorant receptor neuron VA1v" }, { "pred" : "hasExactSynonym", "val" : "ORN (Or47b)", "xrefs" : [ "FlyBrain_NDB:10406" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at4A", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or47b" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or47b" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10406" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067057", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or88a (FBgn0038203). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA1d and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA1d. Its dendrite transduces signals from antennal trichoid sensillum at4.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "odorant receptor neuron VA1d" }, { "pred" : "hasExactSynonym", "val" : "ORN (Or88a)", "xrefs" : [ "FlyBrain_NDB:10427" ] }, { "pred" : "hasExactSynonym", "val" : "ORN at4C", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or88a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or88a" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10427" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067059", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or92a (FBgn0038798). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA2. Its dendrite transduces signals from antennal basiconic sensillum ab1.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or92a)", "xrefs" : [ "FlyBrain_NDB:10428" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab1B", "xrefs" : [ "FlyBase:FBrf0208960" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or92a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or92a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VA2" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10428" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067060", "meta" : { "definition" : { "val" : "Thin antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from ab5 - ab10 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (49b; Cuoto et al., 2005; de Bruyne and Baker, 2008).", "xrefs" : [ "FlyBase:FBrf0108493", "FlyBase:FBrf0187305", "PMID:18535862" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067061", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or49b (FBgn0028963). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA5 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA5. Its dendrite transduces signals from antennal basiconic sensillum ab6.", "xrefs" : [ "FlyBase:FBrf0179238", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or49b)", "xrefs" : [ "FlyBrain_NDB:10408" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab6B", "xrefs" : [ "FlyBase:FBrf0179238" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or49b" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or49b" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VA5" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10408" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067062", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or98a (FBgn0039551). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM5v and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM5v. Its dendrite transduces signals from antennal basiconic sensillum ab7.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or98a)", "xrefs" : [ "FlyBrain_NDB:10429" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab7A", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or98a" }, { "pred" : "hasExactSynonym", "val" : "odorant receptor neuron Or98a" }, { "pred" : "hasRelatedSynonym", "val" : "odorant receptor neuron VM5v" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10429" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067063", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron (ORN) that expresses Or56a (FBgn0034473). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA2. Its dendrite transduces signals from antennal basiconic sensillum ab4.", "xrefs" : [ "FlyBase:FBrf0187305" ] }, "comments" : [ "Antennal basiconic sensillum ab4 is bidendritic. According to Hallem et al., 2004 (FBrf0179238), adult ORN Or7a corresponds to ab4A. We can therefore deduce that adult ORN Or56a corresponds to ORN ab4B." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Or56a)", "xrefs" : [ "FlyBrain_NDB:10409" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab4B", "xrefs" : [ "PMID:18535862" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Or56a" }, { "pred" : "hasRelatedSynonym", "val" : "olfactory receptor neuron DA2" }, { "pred" : "hasRelatedSynonym", "val" : "olfactory receptor neuron Or56a" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10409" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067064", "meta" : { "definition" : { "val" : "Ipsilateral odorant receptor neuron that expresses Gr21a (FBgn0041250). It innervates antennal lobe glomerulus V. Unlike many other antennal olfactory receptor neurons, it does not send an axon branch through the antennal commissure to innervate the equivalent contralateral glomerulus. Suh et al., (2004), identify this neuron as being sensitive to CO2 levels.", "xrefs" : [ "FlyBase:FBrf0051437", "FlyBase:FBrf0179739", "FlyBase:FBrf0187305" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (Gr21a)", "xrefs" : [ "FlyBrain_NDB:10390" ] }, { "pred" : "hasExactSynonym", "val" : "ORN ab1C", "xrefs" : [ "FlyBase:FBrf0208960" ] }, { "pred" : "hasExactSynonym", "val" : "adult ORN Gr21a" }, { "pred" : "hasExactSynonym", "val" : "olfactory receptor neuron Gr21a" }, { "pred" : "hasRelatedSynonym", "val" : "olfactory receptor neuron V" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10390" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00100336" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067123", "meta" : { "definition" : { "val" : "Interneuron whose dendrite innervates the antennal lobe and whose axon innervates some higher brain centre - generally the mushroom body calyx and/or the lateral horn.", "xrefs" : [ "FlyBase:FBrf0051437" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#hidden_assertion", "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "PN" }, { "pred" : "hasRelatedSynonym", "val" : "relay interneuron", "xrefs" : [ "FlyBase:FBrf0051437" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00067123" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "FBbt:00003990" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067345", "meta" : { "definition" : { "val" : "Neuroblast that is the progenitor of interneurons that innervate the antennal lobe.", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0205814" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067346", "meta" : { "definition" : { "val" : "Antero-dorsally located antennal lobe neuroblast.", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0205814" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antero-dorsal antennal lobe neuroblast" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067347", "meta" : { "definition" : { "val" : "Laterally located antennal lobe neuroblast.", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0205814" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lateral antennal lobe neuroblast" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067348", "meta" : { "definition" : { "val" : "Ventrally located antennal lobe neuroblast.", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0205814" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ventral antennal lobe neuroblast" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067349", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0146917", "FlyBase:FBrf0205814", "FlyBase:FBrf0211729" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ad PN" }, { "pred" : "hasExactSynonym", "val" : "adPN" }, { "pred" : "hasRelatedSynonym", "val" : "adPN" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067350", "meta" : { "definition" : { "val" : "Adult antennal lobe projection neuron that fasciculates with the inner antenno-cerebral tract. There are about 100 of these per tract. Most (all?) of these neurons arborize extensively in the mushroom body calyx, whilst the accessory calyx is free from termini. Most are cholinergic (Yasuyama et al., 2003), but some are GABAergic (Wilson and Laurent, 2005; Jefferis et al, 2007).", "xrefs" : [ "FlyBase:FBrf0167816", "FlyBase:FBrf0191055", "FlyBase:FBrf0203179", "FlyBase:FBrf0205263" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "iACT projection neuron", "xrefs" : [ "FlyBrain_NDB:10448" ] }, { "pred" : "hasExactSynonym", "val" : "iPN" }, { "pred" : "hasExactSynonym", "val" : "inner antennocerebral tract projection neuron" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10448" }, { "val" : "VFB:FBbt_00067350" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067351", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron that derives from the ventral antennal lobe neuroblast.", "xrefs" : [ "FlyBase:FBrf0203179", "FlyBase:FBrf0205814" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vPN" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067352", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA2. This neuron is born from the 14th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0183938", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g004" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g004." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA2 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067352" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067353", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL1. Neurons of this class are derived from the first larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0195086", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DL1 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067353" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067354", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DC2. This neuron is derived from the third larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DC2 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067354" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067355", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus D. This neuron is derived from the third larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "See 10.1371/journal.pbio.1000461.g002 for image." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "D adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067355" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067356", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA3. Neurons of this class derive from the fifth larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0195086", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA3 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067356" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067357", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA1d. Neurons of this class are derived from the seventh larval division of the antero-dorsal AL neuroblast and their axons innervate the anterior/ventral region of the lateral horn (Marin et al., 2002).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0146917", "FlyBase:FBrf0195086", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#hidden_assertion", "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA1d adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067357" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067358", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM7. Neurons of this class are derived from the 10th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0195086" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VM7 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067358" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067359", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM2. Neurons of this class are derived from the 11th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0146917", "FlyBase:FBrf0203179", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VM2 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067359" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067360", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DM6. Neurons of this class are derived from the 12th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0195086", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DM6 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067360" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067361", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA1 medial and lateral compartments. Neurons of this class are derived from the 13th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010). Their axons innervate the ventral half of the lateral horn (Marin et al., 2002).", "xrefs" : [ "FlyBase:FBrf0141667", "FlyBase:FBrf0146917", "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA1lm adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067361" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067362", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron that derives from the lateral antennal lobe neuroblast.", "xrefs" : [ "FlyBase:FBrf0141667" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lPN" }, { "pred" : "hasRelatedSynonym", "val" : "lPN" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067363", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DA1. 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"http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VA1lm vPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067371" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067372", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DA1.", "xrefs" : [ "FlyBase:FBrf0146916", "FlyBase:FBrf0146917" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DA1 vPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00067372" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00067500", 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specification map." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00084593", "meta" : { "definition" : { "val" : "The region of the wing disc, ventral to the wing pouch, that will develop into the anepisternum (mesopleura).", "xrefs" : [ "FlyBase:FBrf0027793", "FlyBase:FBrf0031004" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00084597", "meta" : { "definition" : { "val" : "The region of the wing disc, ventral to the wing pouch, that will develop into the anepisternum (mesopleura).", "xrefs" : [ "FlyBase:FBrf0027793", "FlyBase:FBrf0031004" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : 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The JONs form two bundles (dorsolateral and medioventral) within the antennal nerve by the point it reaches the base of antennal segment 1 (a1/scape). Shortly before entering the brain, these two bundles combine and spread over a large area of the AN cross-section. Upon entering the brain, the JONs predominantly occupy the ventral part of the AN. At the ventrolateral side of the antennal lobe, the bundle bifurcates. One side of the bifurcation gives rise to the main trunk of the antennal mechanosensory and motor center (AMMC). 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Cells preferentially activated by low-frequency vibration are loosely distributed as a ring in the middle layer of JON cell bodies. Higher frequencies preferentially activate JON neurons with cell bodies likely located mainly in the inner layer, directly surrounding the antennal nerve (Kamikouchi et al., 2006). These neurons are also transiently activated by the onset and offset of arista displacement.", "xrefs" : [ "FlyBase:FBrf0194812", "FlyBase:FBrf0207518", "FlyBase:FBrf0207559" ] }, "comments" : [ "Response to sound and arista displacement determined electrophysiologically and using the calcium sensor GCaMP (Yorozu et al., 2009)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sound activated Johnston's organ neuron" }, { "pred" : "hasExactSynonym", "val" : "vibration sensitive JON", "xrefs" : [ "FlyBase:FBrf0207559" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-03T11:35:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100003", "meta" : { "definition" : { "val" : "Johnston's organ neuron (JON) that is tonically activated by aristal deflection and is necessary for normal gravitaxis behaviour. 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This class of JON may overlap with the wind sensitive JON." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gravity sensitive Johnston's organ neuron" }, { "pred" : "hasRelatedSynonym", "val" : "deflection sensitive neurons", "xrefs" : [ "FlyBase:FBrf0207518" ] }, { "pred" : "hasRelatedSynonym", "val" : "gravity sensing neurons", "xrefs" : [ "FlyBase:FBrf0207518" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-03T11:46:28Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100004", "meta" : { "definition" : { "val" : "Johnston's organ neuron (JON) tonically activated by arista deflection and required for 'wind-induced suppression of locomotion' behaviour (WISL; Yorozu et al., 2009). The cell bodies of these neurons form a broad ring in the medial and outer layers of the JON array (Kamikouchi et al., 2006).", "xrefs" : [ "FlyBase:FBrf0194812", "FlyBase:FBrf0207559" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "wind sensitive Johnston's organ neuron" }, { "pred" : "hasRelatedSynonym", "val" : "deflection sensitive neuron", "xrefs" : [ "FlyBase:FBrf0207518" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-03T12:01:36Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100005", "meta" : { "definition" : { "val" : "The main trunk (MT) of antennal mechanosensory and motor center (AMMC) is one of two bundles formed by the initial bifurcation of the Johnston's organ nerve projection, ventro-laterally to the antennal lobe. The second, more lateral bundle forms the anterior portion of AMMC zone A. The MT progresses posteriorly and exhibits a second bifurcation that gives rise to the bundle forming AMMC zone B. A final posterior MT bifurcation gives rise to the AMMC lateral core and EA bundle. The MT is devoid of presynaptic sites.", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "comments" : [ "That the MT lacks presynaptic sites is based on negative anti-syntaxin immunolabelling and synaptobrevin::GFP localization. It is this lack of presynaptic sites which is used to distinguish the MT from the branches of the anterior portion of Zone A and zone B which are syntaxin- and synaptobrevin-positive (Kamikouchi et al., 2006)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "main trunk of AMMC" }, { "pred" : "hasRelatedSynonym", "val" : "MT", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasRelatedSynonym", "val" : "main trunk", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasRelatedSynonym", "val" : "main trunk of JON bundle" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100005" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-04T02:17:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100006", "meta" : { "definition" : { "val" : "Bundle, devoid of presynaptic sites, formed from one branch of the final, most posterior bifurcation of the antennal mechanosensory and motor center (AMMC) main trunk (MT). The other side of the bifurcation gives rise to the lateral core of the AMMC (LC). It is directly connected to zone E of the AMMC and consists of the projections of zone E Johnston's organ neurons.", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "comments" : [ "DISAMBIGUATION: Kamikouchi et al., 2006, refer to this as part of zone E, however we use AMMC zone E to refer only to the synapse rich region anterior to the EA. Evidence that EA bundle of AMMC lacks presynaptic sites is based on negative anti-syntaxin immunolabelling and synaptobrevin::GFP localization (Kamikouchi et al., 2006)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "EA" }, { "pred" : "hasExactSynonym", "val" : "EA bundle of AMMC" }, { "pred" : "hasExactSynonym", "val" : "anterior region of bundle e" }, { "pred" : "hasExactSynonym", "val" : "anterior region of zone E" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100006" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-04T03:18:13Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100007", "meta" : { "definition" : { "val" : "Neuron projection bundle containing the axons of Johnston's organ neurons (JONs) that arises from the final, most posterior bifurcation of the main trunk of the antennal mechanosensory and motor center (AMMC). (The other bundle arising from this bifurcation is the EA region of the AMMC). The lateral core is devoid of presynaptic sites. It terminates in a bifurcation that gives rise to the synapse rich AMMC zones C and D.", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "comments" : [ "That the lateral core of AMMC lacks presynaptic sites is based on negative anti-syntaxin immunolabelling and synaptobrevin::GFP localization (Kamikouchi et al., 2006)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC" }, { "pred" : "hasExactSynonym", "val" : "lateral core of AMMC" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100007" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-04T04:01:02Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100008", "meta" : { "definition" : { "val" : "Johnston's organ neuron that innervates zone A of the antennal mechanosensory and motor center (AMMC). The cell bodies of these neurons are located mainly in the inner layer of Johnston's organ, directly surrounding the antennal nerve.", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "comments" : [ "Cell body location determined by enhancer trap expression (Kamikouchi et al., 2006)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "zone A JON", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasExactSynonym", "val" : "zone A Johnston's organ neuron", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-07T12:53:56Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100009", "meta" : { "definition" : { "val" : "Johnston's organ neuron that innervates zone B of the antennal mechanosensory and motor center (AMMC). The cell bodies of zone B Johnston organ neurons are distributed as a ring in the middle layer of cells within the Johnston's organ (Kamikouchi et al., 2006).", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "comments" : [ "Cell body location determined by enhancer trap expression (Kamikouchi et al., 2006)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "zone B JON", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasExactSynonym", "val" : "zone B Johnston's organ neuron", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-07T12:56:54Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100010", "meta" : { "definition" : { "val" : "Johnston's organ neuron that innervates zone C of the antennal mechanosensory and motor center (AMMC). The cell bodies of these neurons are co-mingled with those of zone E Johnston organ neurons, forming a broad ring mainly in the medial and outer layers of the Johnston's organ.", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "comments" : [ "Cell body location determined by enhancer trap expression (Kamikouchi et al., 2006)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "zone C JON", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasExactSynonym", "val" : "zone C Johnston's organ neuron", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-07T12:58:42Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100011", "meta" : { "definition" : { "val" : "Johnston's organ neuron whose response is activated by small, bi-directional displacements of the antenna.", "xrefs" : [ "FlyBase:FBrf0194812", "FlyBase:FBrf0207518", "FlyBase:FBrf0207559" ] }, "comments" : [ "May or may not be the same as 'sound activated Johnston's organ neuron' (FBbt:00100002)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Johnston's organ neuron phasically activated by arista deflection" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-20T01:06:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100012", "meta" : { "definition" : { "val" : "Johnston's organ neuron whose response is maintained so long as unidirectional aristal deflection is sustained.", "xrefs" : [ "FlyBase:FBrf0194812", "FlyBase:FBrf0207559" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Johnston's organ neuron tonically activated by arista deflection" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-20T01:45:16Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100013", "meta" : { "definition" : { "val" : "Johnston's organ neuron tonically activated by posterior arista deflection and required for wind-induced suppression of locomotion behaviour (WISL; Yorozu et al., 2009). These neurons project to zone E of the antennal mechanosensory and motor center.", "xrefs" : [ "FlyBase:FBrf0207559" ] }, "comments" : [ "Calcium sensor (GCaMP) studies show strong activity of AMMC zone E when antenna is displaced either by wind application to the front of the head (or at 45 degrees to the front), or by mechanical manipulation. No activation of zone C or other zones is observed (Yorozu et al., 2009)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Johnston's organ neuron activated by tonic posterior arista deflection" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-20T02:13:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100014", "meta" : { "definition" : { "val" : "Johnston's organ neuron tonically activated by anterior arista deflection and required for wind-induced suppression of locomotion behaviour (WISL; Yorozu et al., 2009). These neurons project to zone C of the antennal mechanosensory and motor center.", "xrefs" : [ "FlyBase:FBrf0207559" ] }, "comments" : [ "Calcium sensor (GCaMP) studies show strong activity of AMMC zone C when antenna is displaced either by wind application to the rear of the head or by mechanical manipulation. No activation of zone E or other zones is observed (Yorozu et al., 2009)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Johnston's organ neuron activated by tonic anterior arista deflection" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-20T02:38:05Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100015", "meta" : { "definition" : { "val" : "Antennal mechanosensory and motor center zone A is a synapse rich sub-region of the antennal mechanosensory and motor center (AMMC) formed from bifurcation of the Johnston's organ bundle. (The other structure arising from this bifurcation is the main trunk of the AMMC (MT)). Zone A is rich in presynaptic sites of Johnston's organ neurons. It is phasically activated by pulse song (between 19-952Hz, 90dB), with the strongest activation by higher-frequency vibrations (Kamikouchi et al., 2009). The cell bodies of zone A Johnston organ neurons are located mainly in the inner layer of Johnston's organ, directly surrounding the antennal nerve (Kamikouchi et al., 2006).", "xrefs" : [ "FlyBase:FBrf0194812", "FlyBase:FBrf0207518" ] }, "comments" : [ "Presence of presynaptic sites of Johnston's organ neurons determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). Sound activation of zone A was determined by GCaMP-based studies (Kamikouchi et al., 2009)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AMMC zone A", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasExactSynonym", "val" : "antennal mechanosensory and motor center zone A" }, { "pred" : "hasRelatedSynonym", "val" : "zone A", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100015" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-23T04:02:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100016", "meta" : { "definition" : { "val" : "Antennal mechanosensory and motor center Zone B is a synapse rich sub-region of the antennal mechanosensory and motor center (AMMC) formed from the first bifurcation of the AMMC main trunk. It is rich in presynaptic sites of Johnston's organ neurons (JONs). It is phasically activated by pulse song (between 19-952Hz, 90dB), with stronger activation by the low-frequency vibrations (Kamikouchi et al., 2009).", "xrefs" : [ "FlyBase:FBrf0194812", "FlyBase:FBrf0207518" ] }, "comments" : [ "Presence of presynaptic sites determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). Sound activation of zones was determined by GCaMP-based studies (Kamikouchi et al., 2009)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AMMC zone B", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasExactSynonym", "val" : "antennal mechanosensory and motor center zone B" }, { "pred" : "hasRelatedSynonym", "val" : "zone B", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100016" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-23T04:02:36Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100017", "meta" : { "definition" : { "val" : "Antennal mechanosensory and motor center zone C is a synapse rich sub-region of the antennal mechanosensory and motor center (AMMC) that arises from the most lateral half of the bifurcation that terminates the lateral core (lc) bundle. (The other half of the bifurcation forms zone D). It is rich in the presynapses of Johnston's organ neurons (JONs) (Kamikouchi et al., 2006). Zone C JONs respond to anterior directed aristal deflection (Yorozu et al., 2009), and are also involved in gravitaxis (Kamikouchi et al., 2009).", "xrefs" : [ "FlyBase:FBrf0194812", "FlyBase:FBrf0207518", "FlyBase:FBrf0207559" ] }, "comments" : [ "Presence of presynaptic sites determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). Activation of zone C Johnston organ neurons through aristal deflection determined by GCaMP studies (Yorozu et al., 2009, Kamikouchi et al., 2009)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AMMC zone C", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasExactSynonym", "val" : "antennal mechanosensory and motor center zone C" }, { "pred" : "hasRelatedSynonym", "val" : "zone C", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100017" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-23T04:03:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100018", "meta" : { "definition" : { "val" : "Antennal mechanosensory and motor center zone D is a synapse rich sub-region of the antennal mechanosensory and motor center (AMMC) that arises from the bifurcation that terminates the lateral core bundle. (The other half of the bifurcation forms zone C). It is rich in the presynapses of Johnston's organ neurons (JONs) (Kamikouchi et al., 2006).", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "comments" : [ "Presence of presynaptic sites determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AMMC zone D", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasExactSynonym", "val" : "antennal mechanosensory and motor center zone D" }, { "pred" : "hasRelatedSynonym", "val" : "zone D", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100018" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-23T04:03:53Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100019", "meta" : { "definition" : { "val" : "Antennal mechanosensory and motor center zone E is a synapse-rich sub-region of the antennal mechanosensory and motor center (AMMC) that is continuous with the EA bundle. It is rich in presynaptic sites of Johnston's organ neurons (JONs). JONs innervating zone E respond tonically to posterior-directed aristal deflection (Yorozu et al., 2009), and are also involved in gravitaxis (Kamikouchi et al., 2009).", "xrefs" : [ "FlyBase:FBrf0194812", "FlyBase:FBrf0207518", "FlyBase:FBrf0207559" ] }, "comments" : [ "Presence of presynaptic sites determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). Activation of zone E Johnston organ neurons through aristal deflection determined by GCaMP studies (Yorozu et al., 2009, Kamikouchi et al., 2009)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AMMC zone E" }, { "pred" : "hasExactSynonym", "val" : "ammc zone E", "xrefs" : [ "FlyBase:FBrf0194812" ] }, { "pred" : "hasExactSynonym", "val" : "antennal mechanosensory and motor center zone E" }, { "pred" : "hasRelatedSynonym", "val" : "zone E", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100019" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-11-23T04:04:18Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100020", "meta" : { "definition" : { "val" : "Johnston's organ neuron that innervates zone D of the antennal mechanosensory and motor center (AMMC).", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "zone D JON", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-07T01:01:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100021", "meta" : { "definition" : { "val" : "Johnston's organ neuron that innervates zone E of the antennal mechanosensory and motor center (AMMC). The cell bodies of these neurons are co-mingled with those of zone C Johnston organ neurons, forming a broad ring mainly in the medial and outer layers of the Johnston's organ.", "xrefs" : [ "FlyBase:FBrf0194812" ] }, "comments" : [ "Cell body location determined by enhancer trap expression (Kamikouchi et al., 2006)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "zone E JON", "xrefs" : [ "FlyBase:FBrf0194812" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-07T01:03:12Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100022", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-08T12:06:22Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100023", "meta" : { "definition" : { "val" : "Second-order precursor cell of multi-innervated external sense organs. 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Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "S-type sensilla S9", "xrefs" : [ "FlyBase:FBrf0212834" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T01:21:22Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100056", "meta" : { "definition" : { "val" : "If present, eleventh most anterior S-type chemosensilla of the labellum.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351", "FlyBase:FBrf0212834" ] }, "comments" : [ "Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. It corresponds to sensilla S10 in Weiss et al., (2011). Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "S-type sensilla S10", "xrefs" : [ "FlyBase:FBrf0212834" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T01:23:59Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100057", "meta" : { "definition" : { "val" : "If present, twelfth most anterior S-type chemosensilla of the labellum.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351", "FlyBase:FBrf0212834" ] }, "comments" : [ "Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. It corresponds to sensilla I10 in Weiss et al., (2011). Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "I-type sensilla I10", "xrefs" : [ "FlyBase:FBrf0212834" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T01:25:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100058", "meta" : { "definition" : { "val" : "Thirteenth most anterior S-type chemosensilla of the labellum, but is the most posterior of the S-type sensilla if present.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351" ] }, "comments" : [ "term obsoleted because the sensilla is not on figure 2(b) of Hiroi, mentioned in the text, or found in Shanbhag (2001)." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "FBbt:00007413" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T01:35:19Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100059", "meta" : { "definition" : { "val" : "Most anterior I-type chemosensilla of the labellum.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351", "FlyBase:FBrf0212834" ] }, "comments" : [ "Naming of sensilla is based on figure 2(b) of Hiroi et al., (2002). 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There is no correspondence to the sensilla in Weiss et al., (2011). Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T01:58:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100061", "meta" : { "definition" : { "val" : "Third most anterior I-type chemosensilla of the labellum.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351", "FlyBase:FBrf0212834" ] }, "comments" : [ "Naming of sensilla is based on figure 2(b) of Hiroi et al., (2002). It corresponds to sensilla I1 in Weiss et al., (2011). Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "I-type sensilla I1", "xrefs" : [ "FlyBase:FBrf0212834" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T02:02:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100062", "meta" : { "definition" : { "val" : "Fourth most anterior I-type chemosensilla of the labellum.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351", "FlyBase:FBrf0212834" ] }, "comments" : [ "Naming of sensilla is based on figure 2(b) of Hiroi et al., (2002). It corresponds to sensilla I2 in Weiss et al., (2011). 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Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T02:45:05Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100070", "meta" : { "definition" : { "val" : "Second most anterior L-type chemosensilla of the labellum.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351" ] }, "comments" : [ "Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T02:47:36Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100071", "meta" : { "definition" : { "val" : "Third most anterior L-type chemosensilla of the labellum.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351", "FlyBase:FBrf0212834" ] }, "comments" : [ "Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. It corresponds to sensilla L7 in Weiss et al., (2011). 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"fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100127", "meta" : { "definition" : { "val" : "Neuron innervating the second, medially located campaniform sensillum of wing vein L3.", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-18T11:16:48Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100128", "meta" : { "definition" : { "val" : "Neuron innervating the campaniform sensillum L3-3 of wing vein L3.", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "L3-3" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-18T11:34:49Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100129", "meta" : { "definition" : { "val" : "Neuron located near to the campaniform sensillum L3-2 of wing vein L3 neuron, but does not possess a typical dendrite whose conspicuous distal tip can be seen near the surface of the epithelium (Murray et al., 1984).", "xrefs" : [ "FlyBase:FBrf0040724" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "extra cell-2", "xrefs" : [ "FlyBase:FBrf0040724" ] }, { "pred" : "hasRelatedSynonym", "val" : "second extra cell along vein L3", "xrefs" : [ "FlyBase:FBrf0040724" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-18T11:50:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100130", "meta" : { "definition" : { "val" : "Neuron located near to the neuron innervating the twin sensillum of margin 1 and 2. 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There are around 10 bilateral pairs of thorn bristles and around 3 bilateral pairs of spine bristles.", "xrefs" : [ "FlyBase:FBrf0050360", "FlyBase:FBrf0068700", "FlyBase:FBrf0204415" ] }, "comments" : [ "Note: currently there is no direct evidence that these neurons are definitely chemosensory. That they are likely to be chemosensory in nature is based on their morphology (Taylor, 1989), that they are multiply innervated (Taylor, 1989), and behavioural observations of the animals during egg laying (Yang et al., 2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "female genital gustatory sensillum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-18T04:34:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100132", "meta" : { "definition" : { "val" : "Gustatory neuron innervating a mesothoracic leg taste bristle. There are between 2 and 4 per bristle (Stocker 1994).", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-19T11:42:24Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100133", "meta" : { "definition" : { "val" : "Mechanosensory neuron innervating a mesothoracic leg taste bristle. Each bristle is singly innervated by a mechanosensory neuron (Stocker 1994).", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-19T11:49:02Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100134", "meta" : { "definition" : { "val" : "Gustatory neuron innervating a metathoracic leg taste bristle. There are between 2 and 4 per bristle (Stocker 1994).", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-19T11:57:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100135", "meta" : { "definition" : { "val" : "Mechanosensory neuron innervating a metathoracic leg taste bristle. Each bristle is singly innervated by a mechanosensory neuron (Stocker 1994).", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-19T11:58:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100136", "meta" : { "definition" : { "val" : "Gustatory neuron innervating a prothoracic leg taste bristle. There are between 2 and 4 per bristle (Stocker 1994).", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-19T12:07:33Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100137", "meta" : { "definition" : { "val" : "Mechanosensory neuron innervating a prothoracic leg taste bristle. Each bristle is singly innervated by a mechanosensory neuron (Stocker 1994).", "xrefs" : [ "FlyBase:FBrf0068700" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-19T12:07:44Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100138", "meta" : { "definition" : { "val" : "Region of the embryonic/larval brain consisting of the fused ganglia of the three gnathal segments. The anterior-most part of this ganglion lies between the two brain hemispheres. Its posterior boundary with the thoracic ganglia lies within the ventral nerve cord. 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They use subesophageal ganglion to refer only to the part of this region that lies between the two brain hemispheres." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "SOG" }, { "pred" : "hasExactSynonym", "val" : "embryonic/larval SOG" }, { "pred" : "hasRelatedSynonym", "val" : "hindbrain", "xrefs" : [ "FlyBase:FBrf0134489" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-04-09T04:13:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100139", "meta" : { "definition" : { "val" : "Chemosensory neuron target area located at the midline of the larval subesophageal ganglion (SOG). This area receives input from pharyngeal chemosensory neurons (the dorsal pharyngeal sense organ, the dorsal pharyngeal organ, and the posterior pharyngeal sense organ) (Colomb et al., 2007).", "xrefs" : [ "FlyBase:FBrf0167539", "FlyBase:FBrf0201176", "FlyBase:FBrf0201188" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-04-12T10:13:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100140", "meta" : { "definition" : { "val" : "Large chemosensory target area located adjacent to area 1 of the larval subesophageal ganglion. This region receives input from the dorsal pharyngeal sense organ, the ventral pharyngeal sense organ, the posterior pharyngeal sense organ, the dorsal pharyngeal organ, the terminal organ, and the ventral pharyngeal sense organ (Colomb et al., 2007).", "xrefs" : [ "FlyBase:FBrf0167539", "FlyBase:FBrf0201176", "FlyBase:FBrf0201188" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-04-12T10:19:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100141", "meta" : { "definition" : { "val" : "Small chemosensory target area located laterally in the larval subesophageal ganglion. This region receives input from non-olfactory neurons of the dorsal organ and from thoracic projections originating in the Kolbchen (also called the 'ventral pit'; Colomb et al., 2007).", "xrefs" : [ "FlyBase:FBrf0167539", "FlyBase:FBrf0201176", "FlyBase:FBrf0201188" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-04-12T10:23:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100142", "meta" : { "definition" : { "val" : "Large chemosensory target area of the larval subesophageal ganglion, located adjacent to the antennal lobes. One or a few neurites from dorsal pharyngeal sense organ neuron(s), and an atypical dorsal organ neuron whose dendrites extend into the terminal organ, target this region (Colomb et al., 2007).", "xrefs" : [ "FlyBase:FBrf0167539", "FlyBase:FBrf0201176", "FlyBase:FBrf0201188" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-04-12T10:26:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100143", "meta" : { "definition" : { "val" : "Neuron whose dendrite innervates the terminal organ but whose soma is located in the dorsal organ ganglion rather than the terminal organ ganglion. The axons of these neurons project via the antennal nerve into area 4 of the subesophageal ganglion. 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Mao and Davis (2009) use a heat shock-induced flip-out system to visualize the projection pattern of one or a few GFP-positive clones." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PAM", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "PAM cluster neuron" }, { "pred" : "hasExactSynonym", "val" : "TH-positive anteriomedial cluster neuron" }, { "pred" : "hasExactSynonym", "val" : "protocerebral anteriomedial dopaminergic cluster neuron" }, { "pred" : "hasRelatedSynonym", "val" : "protocerebral anterior medial dopaminergic cluster neuron" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100214" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T10:58:19Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100215", "meta" : { "definition" : { "val" : "A dopaminergic neuron whose cell body is located in a cluster of approximately 5 cell bodies in the cortex located lateral to the dorsal portion of the vertical lobes in the middle of the superior lateral protocerebrum.", "xrefs" : [ "FlyBase:FBrf0208427" ] }, "comments" : [ "Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PAL", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "PAL cluster neuron" }, { "pred" : "hasRelatedSynonym", "val" : "TH-positive anteriolateral cluster neuron" }, { "pred" : "hasRelatedSynonym", "val" : "protocerebral anteriolateral dopaminergic cluster neuron" }, { "pred" : "hasRelatedSynonym", "val" : "protocerebral anterior lateral dopaminergic cluster neuron" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100215" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T11:03:39Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100216", "meta" : { "definition" : { "val" : "Dopaminergic neuron whose cell body is located in a small cluster along the dorsoventral midline of the posterior superior medial protocerebrum.", "xrefs" : [ "FlyBase:FBrf0208427" ] }, "comments" : [ "Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. They refer to the protocerebral posteriomedial dopaminergic neuron 1 as a cluster." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PPM1", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "PPM1 cluster neuron" }, { "pred" : "hasExactSynonym", "val" : "TH-positive posterior medial cluster 1 neuron" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posteriomedial dopaminergic neuron 1" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posterior medial dopaminergic neuron 1" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100216" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T11:07:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100217", "meta" : { "definition" : { "val" : "A dopaminergic neuron whose cell body is located in a cluster of approximately 8 cell bodies in the cortex of the posterior inferior medial protocerebrum.", "xrefs" : [ "FlyBase:FBrf0208427" ] }, "comments" : [ "Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PPM2", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "PPM2 cluster neuron" }, { "pred" : "hasExactSynonym", "val" : "TH-positive posterior medial cluster neuron 2" }, { "pred" : "hasRelatedSynonym", "val" : "protocerebral posteriomedial dopaminergic cluster neuron 2" }, { "pred" : "hasRelatedSynonym", "val" : "protocerebral posterior medial dopaminergic cluster neuron 2" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100217" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T11:11:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100218", "meta" : { "definition" : { "val" : "A dopaminergic neuron whose cell body is located in a cluster of approximately 6-8 cell bodies in the cortex of the superior posterior slope.", "xrefs" : [ "FlyBase:FBrf0208427" ] }, "comments" : [ "Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PPM3", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "PPM3 cluster neuron" }, { "pred" : "hasExactSynonym", "val" : "TH-positive posterior medial cluster neuron 3" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posteriomedial dopaminergic cluster 3 neuron" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posterior medial dopaminergic cluster neuron 3" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100218" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T11:16:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100219", "meta" : { "definition" : { "val" : "A dopaminergic neuron whose cell body is located in a cluster of approximately 12 cell bodies in the cortex of the posterior inferior lateral protocerebrum. Members of this group project to various parts of the mushroom body: the tip of the alpha lobe; the tip of the alpha' lobe; the upper portion of the alpha lobe segment 2; alpha lobe segment 1 and the lower part of segment 2; and the pedunculus and spur. Other members of this group arborize in areas other than the mushroom body: the edge of the medial portions of the medial lobes; broad areas surrounding the ipsilateral vertical lobes; areas posterior to the ipsilateral vertical lobes; and the entire span of the superior arch.", "xrefs" : [ "FlyBase:FBrf0208427" ] }, "comments" : [ "Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. Mao and Davis (2009) use a heat shock-induced flip-out system to visualize the projection pattern of one or a few GFP-positive clones." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PPL1", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "PPL1 cluster neuron" }, { "pred" : "hasExactSynonym", "val" : "TH-positive posteriolateral cluster neuron 1" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posteriolateral dopaminergic cluster neuron 1" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posterior lateral cluster neuron 1" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100219" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T11:20:30Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100220", "meta" : { "definition" : { "val" : "A dopaminergic neuron whose cell body is located in a cluster of approximately 6 cell bodies in the cortex of the posterior inferior lateral protocerebrum. Members of this group send processes to various parts of the brain: one group send processes to the calyx, the inferior portion of the lateral horn and broad areas in the middle superior medial protocerebrum; another group sends processes to the calyx, the entire lateral horn and broad areas of the middle superior protocerebrum; another subgroup innervates the lobula and broad protocerebral areas; and a final group innervates the posterior lateral protocerebrum.", "xrefs" : [ "FlyBase:FBrf0208427", "PMID:1346506" ] }, "comments" : [ "Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. The cluster of neurons is so named because it appears to correspond to a double cluster (called PPL2ab) of TH-positive neurons in the blow fly (Nassel and Elekes, 1992), though Mao and Davis (2009) were unable to identify two subclusters." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PPL2ab", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "PPL2ab cluster neuron" }, { "pred" : "hasExactSynonym", "val" : "TH-positive posteriolateral dopaminergic cluster neuron 2ab" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posteriolateral dopaminergic cluster neuron 2ab" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posterior lateral dopaminergic cluster neuron 2ab" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100220" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T11:23:17Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100221", "meta" : { "definition" : { "val" : "A dopaminergic neuron whose cell body is located in a cluster of approximately 2 cell bodies in the cortex of the posterior lateral protocerebrum.", "xrefs" : [ "FlyBase:FBrf0208427" ] }, "comments" : [ "Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are related." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PPL2c", "xrefs" : [ "FlyBase:FBrf0208427" ] }, { "pred" : "hasExactSynonym", "val" : "PPL2c cluster neuron" }, { "pred" : "hasExactSynonym", "val" : "TH-positive posteriolateral dopaminergic cluster neuron 2c" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posteriolateral dopaminergic cluster neuron 2c" }, { "pred" : "hasExactSynonym", "val" : "protocerebral posterior lateral dopaminergic cluster neuron 2c" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100221" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T11:28:22Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100222", "meta" : { "definition" : { "val" : "A single, bilaterally paired mushroom body intrinsic neuron. Its large (~10um) cell body is located on the dorsal margin of the ventrolateral protocerebrum, in the lateral cell body region, between the anterior lateral superior clamp and the optic lobe. A single fiber projects dorsomedially towards the mushroom body and bifurcates into two branches (Tanaka et al., 2008). One merges with the middle antenno-cerebral tract at the lateral side of the calyx before entering and extensively arborizing over the calyx. The other branch enters the mushroom body in the medial region of the vertical lobes. Arborisations are found in the pedunculus, in the vertical and medial lobes of the mushroom body (Liu and Davis, 2009) and in the accessory calyx (Tanaka et al., 2008). This neuron is GABA-ergic (Liu and Davis, 2009), with pre-synaptic terminals found throughout the mushroom body lobes, being more pronounced in the alpha' and beta' lobes (Pitman et al., 2011). This neuron is electrically connected to the mushroom body dorsal paired medial cell (Wu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0205263", "FlyBase:FBrf0207183", "FlyBase:FBrf0213804" ] }, "comments" : [ "Pre-synaptic terminals were identified using the pre-synaptic marker Bruchpilot in DPM neurons genetically labelled with the GH146-Gal4 driver [FBti0016783] (Pitman et al., 2011). The neurotransmitter was identified by immunolabelling (Liu and Davis, 2009). Electrical connectivity was inferred using dye coupling (Wu et al., 2011)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "APL" }, { "pred" : "hasExactSynonym", "val" : "MB-APL", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-APL", "xrefs" : [ "FlyBrain_NDB:10446" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10446" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T01:31:04Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100223", "meta" : { "definition" : { "val" : "A neuron, whose cell body is part of a cluster of approximately fifty mushroom body intrinsic neurons per brain hemisphere, that is located in front of the anterior inferior medial protocerebrum, anterior to the vertical and medial mushroom body lobes. The cell body fiber enters the medial lobe through the gap between the gamma and beta' lobes. Within the gamma lobe, neurite projection is limited to the middle segment between the tip and the base of the lobe, named as gamma4. In the beta', neurites arborize in the lateral part of the beta'a stratum (beta'a1) and the medial segment of beta'm and beta'p strata (beta'm2 and beta'p2). At the medial edge of the beta'm and beta'p strata, some of the fibers project to the contralateral lobe.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Tanaka et al., (2008) refer to the MB-AIM as 'MB-APM' on one occasion, perhaps meaning 'anterior paired medial' to maintain consistency with MB-APL and MB-DPM." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-AIM", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-AIM", "xrefs" : [ "FlyBrain_NDB:10447" ] }, { "pred" : "hasExactSynonym", "val" : "MB-AMP", "xrefs" : [ "FlyBase:FBrf0205263" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10447" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T01:41:04Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100224", "meta" : { "definition" : { "val" : "Projection neuron that fasciculates with the outer antenno-cerebral tract. This class includes various multiglomerular projection neurons that do not innervate the mushroom body and some uniglomerular projection neurons (with dendrites in VL1 and VP1) whose axons terminate in the mushroom body calyx and the lateral horn.", "xrefs" : [ "FlyBase:FBrf0051437", "FlyBase:FBrf0205263" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lACT projection neuron" }, { "pred" : "hasExactSynonym", "val" : "lAPT projection neuron" }, { "pred" : "hasExactSynonym", "val" : "lateral APT projection neuron" }, { "pred" : "hasExactSynonym", "val" : "oACT projection neuron", "xrefs" : [ "FlyBrain_NDB:10449" ] }, { "pred" : "hasExactSynonym", "val" : "outer ACT projection neuron" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10449" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T01:48:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100225", "meta" : { "definition" : { "val" : "Projection neuron that fasciculates with the inner-medial antenno-cerebral tract.", "xrefs" : [ "FlyBase:FBrf0051437", "FlyBase:FBrf0205263" ] }, "comments" : [ "Via GAL4 studies, Tanaka et al., (2008) identify two m-mlAPT projection neurons, but suggests there could be more." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "imACT projection neuron", "xrefs" : [ "FlyBrain_NDB:10450" ] }, { "pred" : "hasExactSynonym", "val" : "inner-middle ACT projection neuron" }, { "pred" : "hasExactSynonym", "val" : "m-mlAPT projection neuron", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "medial-mediolateral antenno-protocerebral tract projection neuron", "xrefs" : [ "FBC:BrainName" ] }, { "pred" : "hasExactSynonym", "val" : "mmlAPT projection neuron", "xrefs" : [ "FBC:BrainName" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10450" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T01:53:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100226", "meta" : { "definition" : { "val" : "Neuron whose cell body is located at the posterior area of the lateral cell body region between the posteriorlateral protocerebrum and the optic lobe. There is only one of these per hemisphere. It projects dorsally towards the lateral horn before branching and extensively arborizing in the ventral part of the lateral horn, then turning medially and terminating in the calyx.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-C1", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-C1", "xrefs" : [ "FlyBrain_NDB:10451" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10451" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:18:32Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100227", "meta" : { "definition" : { "val" : "Neuron that innervates the mushroom body and other neuropils.", "xrefs" : [ "FBC:SPR" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:23:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100228", "meta" : { "definition" : { "val" : "A neuron whose cell body is located on the posterior superior medial protocerebrum close to the pars intercerebralis. There are 3 of these per hemisphere. Their cell bodies form a cluster. The cell body fiber runs ventrally and bifurcates near the protocerebral bridge to form a laterodorsal and a lateroventral projection. The dorsal projection arborizes in the superior and inferior neuropils, with some branches entering the accessory calyx of the mushroom body. Some of these fibers connect the accessory calyx and the ventral peripheral zone of the main calyx. The ventral projection forms extensive arborization in the superior and inferior neuropils, and further projects to the posteriorlateral protocerebrum.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Not entirely clear that all 3 have the same innervation patterns. Based on descriptions in Tanaka et al., (2008), all assumed here to innervate mushroom body calyx and accessory calyx." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-C2", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-C2", "xrefs" : [ "FlyBrain_NDB:10452" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10452" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:28:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100229", "meta" : { "definition" : { "val" : "A neuron, which is part of a cluster of five or six neurons per brain hemisphere, whose cell body is located in front of the inferior neuropils, anterior to the middle part of the medial lobe. A neurite projects dorsolaterally and forms arborizations further in the inferior neuropils and within the superior neuropils. Some of these branches extend ventromedially and arborize in the medial-most segments of the gamma lobe and the beta-s and beta'-a strata. Some of the fibers further project to the contralateral medial lobes.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-M1", "xrefs" : [ "FlyBrain_NDB:10454" ] }, { "pred" : "hasExactSynonym", "val" : "MB-M1 neuron" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10454" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:33:30Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100230", "meta" : { "definition" : { "val" : "A neuron, which is part of a cluster of approximately ten neurons per brain hemisphere, whose cell body lies on the inferior neuropils above the anterior surface of the middle part of the gamma lobe. The cell body fiber runs dorsally on the anterior surface of the gamma lobe, with one branch innervating the middle part of the gamma lobe. Another branch further bifurcates on the dorsal surface of the medial lobe. One of these branches terminates in the inferior neuropils behind the medial lobe, whilst the other turns medially through the border between the gamma and beta' lobes and enters the opposite hemisphere. The fibers from the opposite hemisphere run horizontally, enter the medial lobe through border between the gamma and beta' lobes and forms arborization in the middle part of the gamma lobe.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-M2", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-M2", "xrefs" : [ "FlyBrain_NDB:10455" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10455" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:35:40Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100231", "meta" : { "definition" : { "val" : "A neuron, which is part of a cluster of two to five neurons per brain hemisphere, whose cell body is found on the inferior neuropils near the junction of the lobes. The cell body fiber arborizes in the inferior and superior neuropils. The main fiber runs medially towards the tip of the medial lobe. Before entering the beta lobe, fibers branch off to project to the opposite hemisphere. The fibers entering the beta lobe arborize in the medial segment.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-M3", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-M3", "xrefs" : [ "FlyBrain_NDB:10456" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10456" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:38:36Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100232", "meta" : { "definition" : { "val" : "Neuron whose cell body is located on the superior neuropils of each hemisphere, anterior to the pars intercerebralis. The cell body fiber is sent ventrally towards the medial lobe. Arborizations occur in the inferior neuropils just dorsal to the beta' lobe. The main fiber enters the mushroom body between the gamma and beta' lobes and forms terminals in the medial segment of the beta' lobe. Fibers then further run medially to the opposite beta' lobe. There are two of these per hemisphere.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). The projection patterns of the MB-M4 neurons was determined by Tanaka et al., (2008) by comparing the expression patterns of the enhancer traps NP393 and NP3212. In contrast, the connectivity patterns of MB-M5 and MB-M6 neurons in the medial lobes and protocerebrum is not clear due to this overlap." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-M4", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-M4", "xrefs" : [ "FlyBrain_NDB:10457" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10457" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:40:54Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100233", "meta" : { "definition" : { "val" : "A neuron, which is part of a cluster of approximately 5 neurons per brain hemisphere, whose cell body is located on the inferior neuropils, anterior to the vertical lobe. The cell body fiber travels medially and arborizes in the inferior neuropils above the middle part of the medial lobe. The main fibers then intermingle with the MB-M4 neurons and enter the medial lobe through the same pathway as MB-M4.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). The projection patterns of the MB-M4 neurons was determined by Tanaka et al., (2008) by comparing the expression patterns of the enhancer traps NP393 and NP3212. In contrast, the connectivity patterns of MB-M5 and MB-M6 neurons in the medial lobes and protocerebrum is not clear due to this overlap." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-M5", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-M5", "xrefs" : [ "FlyBrain_NDB:10458" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10458" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:43:02Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100234", "meta" : { "definition" : { "val" : "A bilateral neuron whose cell body is located on the superior neuropils, anterior to the pars intercerebralis. The cell body fiber travels ventrally towards the medial lobe, running along the anterior surface of the gamma lobe, turning medially at the bottom of the gamma lobe and forming a terminal in the most medial segment of the gamma lobe. The main fiber then enters the opposite gamma lobe, runs dorsolaterally through the border between the gamma and beta' lobes, arborizing in the inferior and superior neuropils.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). The projection patterns of the MB-M4 neurons was determined by Tanaka et al., (2008) by comparing the expression patterns of the enhancer traps NP393 and NP3212. In contrast, the connectivity patterns of MB-M5 and MB-M6 neurons in the medial lobes and protocerebrum is not clear due to this overlap." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-M6", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-M6", "xrefs" : [ "FlyBrain_NDB:10459" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10459" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:45:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100235", "meta" : { "definition" : { "val" : "A neuron, which is part of a cluster of approximately two neurons per brain hemisphere, whose cell body is found in the inferior neuropils, anterior to the medial lobe. The cell body fibers project mediodorsally and bifurcate in the inferior neuropils. One branch arborizes here and the other runs ventromedially in the anterior surface of the medial lobe and innervates the gamma lobe.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). A precise number for the MB-M7 neurons was not possible by Tanaka et al., (2008) due to the enhancer trap they used (NP2297) also labelling the cell bodies of other neurons in close proximity. Also, because the arborization pattern of the MB-CP1, MB-M1 and MB-M7 intermingle, it was not possible to distinguish arborization areas for each population." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-M7", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-M7", "xrefs" : [ "FlyBrain_NDB:10460" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10460" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:51:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100236", "meta" : { "definition" : { "val" : "A single neuron whose cell body is located on the superior neuropils lateral to the calyx of each brain hemisphere. The cell body fiber projects anterior-medially and forms branches in the superior neuropils posterior to the vertical lobes. One of these branches projects to the opposite hemisphere and others project to the vertical lobe and form extensive arborizations in the middle segment of both the alpha and alpha' lobes.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Tanaka et al., (2008) compare four enhancer traps to identify the MB-V1 neurons (MZ840, NP7187, NP7198 and NP7135)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-V1", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-V1", "xrefs" : [ "FlyBrain_NDB:10461" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10461" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:53:48Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100237", "meta" : { "definition" : { "val" : "A neuron, which is part of a cluster of three neurons per brain hemisphere, whose cell body is located in the posterior dorsal superior lateral protocerebrum, lateral to the calyx. The cell body fiber runs near the calyx and forms arborizations in the superior neuropils posterior to the tip of the alpha lobe, before entering and arborizing in the tip of the vertical lobe. The fibers further turn ventrally and terminate on the alpha or alpha' lobes. Near the tip of these lobes, two fibers emerge: one of which projects posteriolaterally to the lateral horn, whereas the other projects medially to the contralateral middle superiormedial protocerebrum just posterior to the vertical lobes and the lateral horn (Tanaka et al., 2008, Séjourné et al., 2011).", "xrefs" : [ "FlyBase:FBrf0205263", "FlyBase:FBrf0214029" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Pre-synaptic terminals were assessed using the pre-synaptic marker synaptotagmin (Séjourné et al., 2011). Localization of choline acetyltransferase to a subset of MB-V2 terminals suggests some or all of these neurons are cholinergic (Séjourné et al., 2011). Assertions about innervation are based on" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-V2", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-V2", "xrefs" : [ "FlyBrain_NDB:10462" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10462" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T02:56:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100238", "meta" : { "definition" : { "val" : "A neuron, which is one of approximately two neurons per brain hemisphere, whose cell body is located in the dorsal-most area of the subesophageal ganglion, ventromedial to the antennal lobe. The cell body fiber ascends through the median bundle to the level of the gamma lobe, and then projects towards the tip of the alpha lobe where it forms extensive arborization. On the way to the alpha lobe, several fibers branch off with some arborizing in the superior neuropils, and others arborize in this region before turning anteriorly and terminating in the anterior dorsal superior medial protocerebrum.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Tanaka et al., (2008) comment that there is a possibility of interconnectedness between MB-V3 and MB-V4 because thin fibers are occasionally found connecting the two neuronal projections." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-V3", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-V3", "xrefs" : [ "FlyBrain_NDB:10463" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10463" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:01:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100239", "meta" : { "definition" : { "val" : "One of approximately two neurons per brain hemisphere whose cell body is located in the dorsal-most area of the subesophageal ganglion, ventromedial to the antennal lobe. The cell body fiber ascends through the median bundle to the level of the gamma lobe before making a steep lateral turn and forming extensive branches in the inferior neuropils. Some branches further arborize in the superior neuropils posterior to the vertical lobe. The main fiber further projects towards the vertical lobe and arborizes extensively in the alpha' lobe.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Tanaka et al., (2008) comment that there is a small possibility of interconnectedness between MB-V3 and MB-V4 because thin fibers are occasionally found connecting the two neuronal projections." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-V4", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-V4", "xrefs" : [ "FlyBrain_NDB:10464" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10464" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:03:27Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100240", "meta" : { "definition" : { "val" : "One of approximately two neurons per brain hemisphere whose cell body is located on the posteriorlateral protocerebrum, ventrolateral to the calyx. The cell body fiber projects to and arborizes with the pedunculus where it bifurcates, with one branch turning posteriorly to terminate in the calyx. The other branch projects anteriorly through the pedunculus, turns medially and runs below the medial lobe. The fiber then turns dorsally, enters the medial lobe and bifurcates in the gamma lobe. One of these fibers turns medially to the opposite medial lobe, whilst the other turns dorsolaterally and terminates in the inferior neuropils, posterior to the medial lobe.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-C1", "xrefs" : [ "FlyBase:FBrf0205263" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:42:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100241", "meta" : { "definition" : { "val" : "A neuron whose cell body is located in the inferior neuropils, ventrolateral to the calyx of each brain hemisphere. The cell body fiber projects towards the anterior of the inferior neuropils. On the way there it bifurcates with one branch turning ventrally and terminating in the ventral complex. The second branch further branches in the inferior neuropil close to the beta lobe. One of these branches runs medially to the opposite hemisphere. Another turns ventrolaterally and arborizes in the basal segments of the gamma lobe and the alpha lobe. The final branch arborizes in the anterior region of the inferior neuropil.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-MV1", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-MV1", "xrefs" : [ "FlyBrain_NDB:10466" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10466" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:45:04Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100242", "meta" : { "definition" : { "val" : "A neuron whose cell body is located in front of the ventral complex, ventral to the junction of the lobes in each brain hemisphere. The cell body fiber runs dorsomedially to the opposite hemisphere. The fiber from the opposite hemisphere runs laterally and bifurcates behind the tip of the beta' lobe. One of the fibers runs ventrally and enters the medial-most part of the beta lobe where it arborizes through the tip of the beta-p lobe to the lateral part of the beta lobe segment. The other fiber runs dorsolaterally towards the tip region of the vertical lobe and terminates in the superior neuropils. On the way, the fiber bifurcates and one of the branches terminates in the tip of the alpha' lobe.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-MV2", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-MV2", "xrefs" : [ "FlyBrain_NDB:10467" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10467" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:47:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100243", "meta" : { "definition" : { "val" : "A neuron whose cell body is located on the inferior neuropils, lateral to the calyx of each brain hemisphere. The cell body fiber runs anteriormedially and diverges above the ellipsoid body, with most of the branches arborizing in the anterior part of the inferior neuropils. One fiber turns dorsolaterally, runs in front of the anterior surface of the vertical lobe and terminates in the middle of the inferior neuropils. On the way, one fiber branches off and arborizes in the anterior and middle of the superior neuropils. Another fiber turns ventromedially and projects to the opposite hemisphere. A third fiber turns ventrolaterally, runs in front of the anterior surface of the gamma lobe and then below the gamma lobe, and arborizes in the spur of the gamma lobe and inner core of the pedunculus.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-MP1", "xrefs" : [ "FlyBase:FBrf0205263" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:49:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100244", "meta" : { "definition" : { "val" : "A neuron, which is part of a cluster of at least two neurons, whose cell body is located on the inferior neuropils, near the junction of the mushroom body lobes of each brain hemisphere. The cell body fiber bifurcates near the vertical lobe. One of these fibers turns ventromedially to the tip of the medial lobe, whereas the other runs dorsally. The ventromedially directed branch innervates the medial lobe through the border between the gamma and beta' lobes. One branch runs medially to the opposite medial lobe whereas the other runs laterally to the basal segments of the alpha lobe and the inner core of the pedunculus. From the alpha lobe, one branch runs dorsally, turns dorsolaterally behind the alpha lobe and terminates in the posterior of the superior neuropils where it arborizes and further spreads laterally to the anterior dorsal superior lateral protocerebrum and the inferior neuropils.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008).The exact number of MB-VP1 neurons could not be exactly determined by Tanaka et al., (2008) because the enhancer trap they use labels other close cell bodies." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-VP1", "xrefs" : [ "FlyBase:FBrf0205263" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:52:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100245", "meta" : { "definition" : { "val" : "A neuron, which is part of a cluster of at least seven neurons, whose cell body is located on the inferior neuropils, near the junction of the mushroom body lobes of each brain hemisphere. The cell body fiber bifurcates in front of the vertical lobes. One of these branches turns ventromedially to the tip of the medial lobe, whereas the other runs dorsally. The first branch innervates the medial lobe through the border between the gamma and beta' lobes and bifurcates both medially and laterally at the border between the beta and beta' lobes. One bundle of fibers runs medially to the opposite lobe, whereas the other runs laterally to the basal segments of the beta and alpha lobe as well as the core of the pedunculus. The second of the initial branches diverges in the superior neuropils near the tip of the vertical lobe. One branch turns laterally, runs through the anterior side of the vertical lobe and terminates in the superior intermediate protocerebrum and superior medial protocerebrum. Another branch turns medially and terminates in the anterior dorsal superior medial protocerebrum. Some branches turn laterally, innervating the posterior dorsal superior medial protocerebrum and posterior dorsal superior lateral protocerebrum, and terminate in the anterior dorsal superior lateral protocerebrum.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-MVP1", "xrefs" : [ "FlyBase:FBrf0205263" ] }, { "pred" : "hasExactSynonym", "val" : "MB-MVP1", "xrefs" : [ "FlyBrain_NDB:10470" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10470" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:55:54Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100246", "meta" : { "definition" : { "val" : "A neuron whose cell body is located on the inferior neuropils in each brain hemisphere. The cell body fiber runs posteriorly and bifurcates laterally and medially. The lateral branch arborizes in the lateral-most spur area of the gamma lobe and the inner core of the pedunculus. The medial branch bifurcates in front of the middle segment of the medial lobe. One of the branches projects to the contralateral medial lobe. On the way to the opposite hemisphere, in the medial segment of the medial lobe, one fiber branches out, turns dorsolaterally and arborizes in the inferior neuropils. Some fibers extend further to the superior neuropils. The other branch turns dorsally, runs along the alpha lobe and terminates in the posterior tip of the alpha' lobe.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-MVP2", "xrefs" : [ "FlyBrain_NDB:10471" ] } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10471" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T03:58:07Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100247", "meta" : { "definition" : { "val" : "Mushroom body neuron that innervates the mushroom body vertical and medial lobes of larvae, but is pruned back during early pupal stages to innervate only the gamma lobe (Awasaki and Ito, 2004; Awasaki et al., 2006). The gamma neurons are the first born of the Kenyon cells, born before the alpha' and beta' neurons. In the pedunculus, the gamma axons occupy the periphery, with the alpha/beta neurons occupying the core stratum and the alpha'/beta' neurons in the intermediate stratum (Awasaki and Ito, 2004; Awasaki et al., 2006; Tanaka et al., 2008). 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The alpha/beta neurons are the last born of the Kenyon cells, born during the pupal stage. In the pedunculus, the alpha/beta neurons occupy the core stratum with the gamma axons at the periphery and the alpha'/beta' neurons in the intermediate stratum (Awasaki et al., 2006). It also arborises in the calyx, forming pre- and post-synaptic terminals (Christiansen et al., 2011).", "xrefs" : [ "FlyBase:FBrf0205263", "FlyBase:FBrf0214059" ] }, "comments" : [ "Pre-synaptic terminals were identified using the pre-synaptic marker Brp and post-synaptic terminals by labelling a subunit of the acetylcholine receptor (Dalpha7) in genetically labelled mushroom body alpha/beta neurons (Christiansen et al., 2011)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "alpha/beta Kenyon cell" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100248" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T04:07:58Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100249", "meta" : { "definition" : { "val" : "Mushroom body neuron that bifurcates at the anterior end of the pedunculus, projecting into the mushroom body alpha'-lobe and beta'-lobe. The alpha'/beta' neurons are the second born of the Kenyon cells, born during the mid-larval stage before the alpha and beta neurons, but after the gamma neurons. In the pedunculus, the alpha' and beta' neurons occupy the intermediate stratum between the gamma axons at the periphery and the alpha/beta neurons at the core. The alpha'/beta' neuron also arborises in the calyx, forming post-synaptic terminals (Christiansen et al., 2011).", "xrefs" : [ "FlyBase:FBrf0205263", "FlyBase:FBrf0214059" ] }, "comments" : [ "Post-synaptic terminals were identified by labelling a subunit of the acetylcholine receptor (Dalpha7) in genetically labelled mushroom body alpha'/beta' neurons (Christiansen et al., 2011)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mushroom body alpha'/beta' Kenyon cell" }, { "pred" : "hasExactSynonym", "val" : "mushroom body alpha-prime/beta-prime Kenyon cell" }, { "pred" : "hasExactSynonym", "val" : "mushroom body alpha-prime/beta-prime neuron" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100249" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-09T04:13:10Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100250", "meta" : { "definition" : { "val" : "A subgroup of the mushroom body alpha'/beta' neurons that mainly innervates the anterior stratum of the alpha' and beta' lobes.", "xrefs" : [ "FlyBase:FBrf0205263" ] }, "comments" : [ "Comparison of the expression patterns of the enhancer traps NP65, NP1131, NP6522 and NP7427 prompted the classification of three subpopulations (anterior, middle and posterior) of alpha'/beta' neurons by Tanaka et al., (2008), according to their terminal positions. 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"fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100312", "meta" : { "definition" : { "val" : "Core region of the anterior lymph gland pair, consisting of undifferentiated hemocyte progenitors.", "xrefs" : [ "FlyBase:FBrf0208762" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-29T03:43:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100313", "meta" : { "definition" : { "val" : "Anatomical structure that has multiple cells as parts.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-02T02:25:04Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100314", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-02T04:58:18Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100315", "meta" : { "definition" : { "val" : "A subdivision of the gut along its long axis.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "djs93" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-02T05:21:35Z" }, { "pred" : 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At its anterior and posterior ends this includes structures that are not foregut or hindgut.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100323", "meta" : { "definition" : { "val" : "The entire embryonic/larval anatomical structure through which food and its digestion products are ingested, digested and excreted. 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Please use metatarsus ; FBbt:00004648." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FBbt:00004648" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100325", "meta" : { "definition" : { "val" : "Sclerotized 10th tergite plate flanking the adult anus (Ferris, 1950).", "xrefs" : [ "FlyBase:FBrf0007734" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "10th tergite", "xrefs" : [ "FlyBase:FBrf0007734" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-18T02:39:58Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100326", "meta" : { "definition" : { "val" : "Dorsal Kolbchen of the embryonic/larval prothoracic (T1) segment. 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One branch ends in the optic tubercle whilst the other makes a medial turn to terminate in the superior medial posterior ventrolateral protocerebrum.", "xrefs" : [ "FBC:BrainName", "FlyBase:FBrf0039022" ] }, "comments" : [ "Fischbach and Lyly-Hunerberg, (1983), subdivide the anterior optic tract (AOT) into four sub-bundles: S1-S4. S1 consists of 100-110 think axons surrounded by ~60 large diameter neurons that form the S2 bundle. These bundles together occupy the proximal part of the AOT close to the neuropil of the lateral protocerebrum. S3 forms the lateral ventral part of the AOT and is formed by ~430 axons of small diameter that project into the anterior optic foci. 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Neurons of this class are born during the 20th and final division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g004" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g004." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DL4 adPN", "xrefs" : [ "FlyBase:FBrf0211729" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100382" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100383", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VC4. Neurons of this class are derived from the 14th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VC4 adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100383" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100384", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage (embryonic born) whose dendrites innervate only antennal lobe glomerulus DA3. Neurons of this class are born during the 2nd larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DA3 adPN", "xrefs" : [ "FlyBase:FBrf0211729" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100384" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100385", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM5d. Neurons of this class are derived from the 15th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VM5d adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100385" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100386", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM5v. Neurons of this class are derived from the 15th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g002." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "VM5v adPN" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100386" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100387", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VC3. Neurons of this class are derived from the 17th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g003" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g003." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ORN (VC3m)", "xrefs" : [ "FlyBrain_NDB:10432" ] }, { "pred" : "hasExactSynonym", "val" : "VC3 adPN" } ], "xrefs" : [ { "val" : "FlyBrain_NDB:10432" }, { "val" : "VFB:FBbt_00100387" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100388", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL2v. Neurons of this class are derived from the 22nd larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g003" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g003." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DL2v adPN", "xrefs" : [ "FlyBase:FBrf0211729" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100388" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100389", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL2d. Neurons of this class are derived from the 23rd larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010).", "xrefs" : [ "FlyBase:FBrf0211729", "doi:10.1371/journal.pbio.1000461.g002" ] }, "comments" : [ "For image, see doi:10.1371/journal.pbio.1000461.g003." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DL2d adPN", "xrefs" : [ "FlyBase:FBrf0211729" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00100389" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100390", "meta" : { "definition" : { "val" : "Dopaminergic neuron located along the midline in each segment of the larval ventral nerve cord.", "xrefs" : [ "FlyBase:FBrf0100717" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dopamine medial neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-02-16T11:16:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100391", "meta" : { "definition" : { "val" : "Serotonergic neuron whose cell body is located in one of 3 clusters on either side of the ventral midline in the ventral nerve cord of the maxillary segment. Axons from this cluster cross the midline in the maxillary segment. In the adult they are located in the posterior-lateral subesophageal ganglion.", "xrefs" : [ "FlyBase:FBrf0048551" ] }, "comments" : [ "Disambiguation: P.Taghert has confirmed that the serotonin-expressing SE2 cells are a distinct, non-overlapping cell population to the FMRFamide-expressing SE2 cells." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "SE2 neuron" }, { "pred" : "hasExactSynonym", "val" : "subesophageal ganglion SE neuron 2" }, { "pred" : "hasExactSynonym", "val" : "subesophageal ganglion neuron 2" } ], "xrefs" : [ { "val" : "VFB:FBbt_00100391" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-01-17T12:07:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100392", "meta" : { "definition" : { "val" : "Bilaterally paired (Kolhekar et al., 1997) FMRFamide expressing interneuron of the subesophageal neuromere. They are located more posteriorly than the FMRFamide SE2 neurons (Schneider et al., 1993).", "xrefs" : [ "FlyBase:FBrf0059164" ] }, "comments" : [ "Disambiguation: P.Taghert has confirmed that the FMRFamide-expressing SE3 cells are a distinct, non-overlapping cell population to the serotonergic SE3 cells." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "subesophageal ganglion SE neuron 3" }, { "pred" : "hasExactSynonym", "val" : "subesophageal ganglion neuron 3" }, { "pred" : "hasRelatedSynonym", "val" : "SE3 neuron" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-01-17T12:07:59Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100393", "meta" : { "definition" : { "val" : "Ganglion of the larval terminal organ. It contains the cell bodies of approximately 32-33 neurons (Python and Stocker, 2002), dendrites from which terminate in the terminal organ, and axons from which travel to the larval brain by way of the maxillary nerve.", "xrefs" : [ "FlyBase:FBrf0147119" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "TOG", "xrefs" : [ "FlyBase:FBrf0147119" ] }, { "pred" : "hasExactSynonym", "val" : "ganglion of the TO", "xrefs" : [ "FlyBase:FBrf0147119" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-02-24T11:13:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100394", "meta" : { "definition" : { "val" : "Ganglion that contains the cell bodies of neurons associated with the larval ventral organ. It connects to the central nervous system via the maxillary nerve.", "xrefs" : [ "FlyBase:FBrf0147119" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-02-24T12:12:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100395", "meta" : { "definition" : { "val" : "Intermediate sized sensilla of antennal segment 3 that contains two receptor cells.", "xrefs" : [ "FlyBase:FBrf0141649" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "I-2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-02-24T02:06:59Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100396", "meta" : { "definition" : { "val" : "Intermediate sized sensillum of the third antennal segment that contains three receptor cells.", "xrefs" : [ "FlyBase:FBrf0141649" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "I-3", "xrefs" : [ "FlyBase:FBrf0141649" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-02-24T02:09:56Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100397", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-01T02:27:28Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100398", "meta" : { "definition" : { "val" : "Glomerulus 22c is located at the ventrolateral edge of the larval antennal lobe (LAL). 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These neurons constitute about 50% of the embryonic/larval antennal lobe projection neurons that have an anterodorsally located soma (Python and Stocker, 2002).", "xrefs" : [ "FlyBase:FBrf0152159", "FlyBase:FBrf0187327" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-14T04:34:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100478", "meta" : { "definition" : { "val" : "A projection neuron that innervates a single larval antennal lobe glomerulus.", "xrefs" : [ "FlyBase:FBrf0187327", "FlyBase:FBrf0208205" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-14T04:37:56Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100479", "meta" : { "definition" : { "val" : "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 30a.", "xrefs" : [ "FlyBase:FBrf0208205" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-04-06T12:02:03Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100480", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron whose cell body lies in the lateral cell body region. The axon of Lcn9 fasciculates in the anterior optic tract with Lcn6 and terminate in the central part of the dorsal-posterior ventrolateral protocerebrum. Dendrites arborize in lobula layers 3, 4, 5 and 6.", "xrefs" : [ "FlyBase:FBrf0193607" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC9", "xrefs" : [ "FlyBase:FBrf0193607" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-04-12T12:15:59Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100481", "meta" : { "definition" : { "val" : "Antennal lobe projection neuron from the ad neuroblast lineage (embryonic born) whose dendrites innervate only antennal lobe glomerulus VM3. 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It arborizes in lobula layers 3, 4, 5 and 6.", "xrefs" : [ "FlyBase:FBrf0193607" ] }, "comments" : [ "Otsuna and Ito (2006) suggest that there could be three subgroups of Lcn10 neurons (termed A, B and C) based on high-level magnification differences in fibers innervating the optic tubercle." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC10", "xrefs" : [ "FlyBase:FBrf0193607" ] }, { "pred" : "hasRelatedSynonym", "val" : "LCN", "xrefs" : [ "FlyBase:FBrf0039192" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-04-12T02:08:27Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100483", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron whose cell body lies in the dorsal area of the lateral cell body region. It arborizes in lobula layers 2, 3 and 4, and terminates in the posteriolateral part of the ventrolateral protocerebrum. There are 36-40 cells in this class.", "xrefs" : [ "FlyBase:FBrf0193607" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC11", "xrefs" : [ "FlyBase:FBrf0193607" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-04-12T02:49:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100484", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron whose cell body lies in the anterior-ventral area of the lateral cell body region. It has synaptic varicosities in lobula layers 3 and 4, and terminates in the ventrolateral protocerebrum. There are 30-35 cells in this class.", "xrefs" : [ "FlyBase:FBrf0193607" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC12", "xrefs" : [ "FlyBase:FBrf0193607" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-04-13T11:47:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100485", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron that arborizes in lobula layers 3, 4 and 5, and terminates in the posteriolateral protocerebrum. 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There are 32-38 neurons in this group, and they have their cell bodies in the mid-dorsal area of the lateral cell body region.", "xrefs" : [ "FlyBase:FBrf0193607" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LC14", "xrefs" : [ "FlyBase:FBrf0193607" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-04-13T01:19:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100487", "meta" : { "definition" : { "val" : "A lobula tangential neuron whose cell body is located in the anterior dorsal area of the lateral cell body region. It forms varicosities in lobula layers 3, 4 and 5, and in the ventrolateral protocerebrum.", "xrefs" : [ "FlyBase:FBrf0193607" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LT11", "xrefs" : [ "FlyBase:FBrf0193607" ] }, { "pred" : "hasExactSynonym", "val" : "lobular tangential neuron Lt11" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "sr544" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-04-14T01:20:48Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00100488", "meta" : { "definition" : { "val" : "A lobula tangential neuron whose cell body is located in the anterior area of the lateral cell body region. The cell body fiber bifurcates at the neck of the lobula. 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The cell body fiber runs anteriorly through the plpr neuropil and bifurcates in the ventrolateral protocerebrum. The lateral branch makes a turn and runs ventroposterior towards the neck of the lobula. From there the neuron forms extensive tree-like branches in lobula layer 4. The medial branch makes a right-angle turn to run ventroposterior towards the posterior plpr. It forms terminals in the area that is close to the position of the cell body. 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They elaborate long processes and wrap R cell axons in the medulla, which stop precisely at the base of expanded R8 and R7 growth cones. 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This ORN responds strongly to changes in humidity (Yao et al., 2005)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ORN ac2", "xrefs" : [ "FlyBase:FBrf0206496" ] }, { "pred" : "hasExactSynonym", "val" : "Ir75d ac2", "xrefs" : [ "FlyBase:FBrf0206496" ] }, { "pred" : "hasExactSynonym", "val" : "ORN Ir75d ac2" }, { "pred" : "hasExactSynonym", "val" : "ionotropic receptor neuron Ir75d ac2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-03T01:56:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110015", "meta" : { "definition" : { "val" : "Bilateral olfactory receptor neuron that expresses the Ionotropic receptor (Ir) 41a (FBgn0040849) and the co-receptors 25a (FBgn0031634) and 76b (FBgn0036937). 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Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM4 (Silbering et al., 2011). 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Its axon branches, with one branch innervating the ipsilateral antennal lobe glomeruli DL4 and DP1 medial compartment and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomeruli DL4 and DP1 medial compartment (Ai et al., 2010; Silbering et al., 2011). 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It is distinguishable from ac1, ac3 and ac4 by its odor response profile (Yao et al., 2005) and the identity of the ORNs that innervate it (Benton et al., 2009).", "xrefs" : [ "FlyBase:FBrf0187906", "FlyBase:FBrf0206496" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-03T01:56:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110022", "meta" : { "definition" : { "val" : "Coeloconic olfactory sensillum of the antenna that is innervated by two olfactory receptor neurons (ORN). It is distinguishable from ac1, ac2 and ac4 by its odor response profile (Yao et al., 2005) and the identity of the ORNs that innervate it (Benton et al., 2009). The sensilla are present in the posterior antennal surface (Benton et al., 2009).", "xrefs" : [ "FlyBase:FBrf0187906", "FlyBase:FBrf0206496" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-03T01:56:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110023", "meta" : { "definition" : { "val" : "Coeloconic olfactory sensillum of the antenna that is innervated by three olfactory receptor neurons (ORN). It is distinguishable from a1, ac2 and ac3 by its odor response profile (Yao et al., 2005) and the identity of the ORNs that innervate it (Benton et al., 2009).", "xrefs" : [ "FlyBase:FBrf0187906" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#olfactory_system_draft" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-03T01:56:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110024", "meta" : { "definition" : { "val" : "Ventral-most chamber of the sacculus of the antenna, where the opening is located (Shanbhag et al., 1995).", "xrefs" : [ "FlyBase:FBrf0084361" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-03T01:56:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110025", "meta" : { "definition" : { "val" : "Middle chamber of the sacculus of the antenna. It has several compartments, each containing a single sensillum (Shanbhag et al., 1995).", "xrefs" : [ "FlyBase:FBrf0084361" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-03T01:56:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110026", "meta" : { "definition" : { "val" : "Dorsal-most and largest chamber of the sacculus of the antenna. It has a ventral and a dorsal compartment, which differ in the type of sensilla they contain. The compartments are separated by a thick cuticular flap that extends lateromedially (Shanbhag et al., 1995).", "xrefs" : [ "FlyBase:FBrf0084361" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#FB_gloss", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-03T01:56:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110027", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-22T01:03:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110028", "meta" : { "definition" : { "val" : "Dorsal compartment of ventro-medial glomerulus 7.", "xrefs" : [ "FlyBase:FBrf0187305", "FlyBase:FBrf0192533" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal lobe glomerulus VM7d" } ], "xrefs" : [ { "val" : "VFB:FBbt_00110028" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-05T09:57:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110029", "meta" : { "definition" : { "val" : "Ventro-central antennal lobe glomerulus of the adult antennal lobe, dorsal to antennal lobe glomerulus VC3 lateral compartment (Endo et al., 2007).", "xrefs" : [ "FlyBase:FBrf0192533" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "antennal glomerulus VC5" } ], "xrefs" : [ { "val" : "VFB:FBbt_00110029" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-05T09:57:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110030", "meta" : { "definition" : { "val" : "Neuron that expresses tachykinin (FBgn0037976).", "xrefs" : [ "FlyBase:FBrf0130087" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LTK-LI", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasExactSynonym", "val" : "Locusta tachykinin-like immunoreactive neurons", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "DTK", "xrefs" : [ "FlyBase:FBrf0130087" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-07T02:01:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110031", "meta" : { "definition" : { "val" : "Neuron that expresses leucokinin (FBgn0028418).", "xrefs" : [ "FlyBase:FBrf0155902" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LK neuron", "xrefs" : [ "FlyBase:FBrf0155902" ] }, { "pred" : "hasExactSynonym", "val" : "LK-immunopositive neuron", "xrefs" : [ "FlyBase:FBrf0155902" ] }, { "pred" : "hasExactSynonym", "val" : "LK-immunoreactive cell", "xrefs" : [ "FlyBase:FBrf0155902" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-07T02:01:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110032", "meta" : { "definition" : { "val" : "Cell of the embryonic/larval midgut that expresses tachykinin (FBgn0037976). In the late third instar, tachykinin expressing cells in the midgut are located posteriorly, just anterior to the attachment of the Malpighian tubules and have have a morphology consistent with an endocrine role.", "xrefs" : [ "FlyBase:FBrf0130087" ] }, "comments" : [ "Siviter et al., 2000, observed tachykinin expressing cells in the midgut at embryonic stage 17 and in late third instar larvae using an antibody raised against locust tachykinin." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "DTK", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "LTK-LI", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "Locusta tachykinin-like immunoreactive cell", "xrefs" : [ "FlyBase:FBrf0130087" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110036", "meta" : { "definition" : { "val" : "Adult cell of the midgut that expresses tachykinin (FBgn0037976). These cells have an elongated shape, often spanning the gut epithelium, similar to the morphology of other midgut endocrine cells. They are found throughout the midgut except for a medial domain.", "xrefs" : [ "FlyBase:FBrf0130087" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Locusta tachykinin-like immunoreactive neurons", "xrefs" : [ "FlyBase:FBrf0130087" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110037", "meta" : { "definition" : { "val" : "Larval neuron that expresses tachykinin (FBgn0037976), whose cell body is located in the anterior protocerebrum and that innervates the ventral nerve cord. At the third instar larval stage, these neurons also form arborisations at two sites near the midline of the protocerebrum and in the subesophageal ganglion. At the level of the ventral nerve cord, this neuron has one main axon and two aditional processes, one longer and one shorter than the main axon. There is one neuron per hemisphere (Winther et al., 2003; Siviter et al., 2000).", "xrefs" : [ "FlyBase:FBrf0130087", "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining. This pair of neurons is present in all larval stages." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anterior large descending neuron DN", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasExactSynonym", "val" : "tachykinin descending neuron", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "larval tachykinin DN neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110038", "meta" : { "definition" : { "val" : "Pupal neuron that expresses tachykinin (FBgn0037976), whose cell body is located in the lateral protocerebrum and that innervates the ventral nerve cord (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "This neuron probably corresponds to the larval and adult large descending DN neurons. Tachykinin expression was observed by in situ hybridization and immunostaining (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pupal tachykinin DN neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "anterior large descending neuron DN", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "tachykinin descending neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110039", "meta" : { "definition" : { "val" : "A larval neuron that expresses tachykinin (FBgn0037976), whose cell body is located in the tritocerebral neuropils and that innervates the subesophageal ganglion. There are one to two pairs in first instar larvae, and three in the other larval stages (Winther et al., 2003; Siviter et al., 2000).", "xrefs" : [ "FlyBase:FBrf0130087", "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "subesophageal ganglion tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasExactSynonym", "val" : "tritocerebral neuron Tr", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "SEG tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "tritocerebrum tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0130087" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110040", "meta" : { "definition" : { "val" : "Pupal neuron that expresses tachykinin (FBgn0037976), whose cell body is located in the lateral posterior protocerebrum and that innervates the superior median protocerebrum and fan-shaped body (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining at pupal stages P8 and P9, with more cells being labelled by immunostaining (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pupal LPP2 neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "lateral posterior protocerebral LPP2 tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110041", "meta" : { "definition" : { "val" : "Larval neuron that expresses tachykinin (FBgn0037976) and whose cell body and arborisation are located in the dorsal or medial protocerebrum (Siviter et al., 2000). The number of neurons increases during larval stages: 5 pairs are observed at first instar stage and 11 at prepupal stage P1. In third instar larvae some of these neurons have bilateral arborisations crossing the midline by two commissures (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0130087", "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining, with more cells being labelled by in situ hybridization." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "PC tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "Pr tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "protocerebral tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0130087" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110042", "meta" : { "definition" : { "val" : "Pupal neuron that expresses tachykinin (FBgn0037976), whose cell body is located in the cortex of the antennal lobes (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining at pupal stages P8 and P9, with more cells and stronger labelling obtained being in situ hybridization (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pupal LPP2 neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "lateral posterior protocerebral LPP2 tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110043", "meta" : { "definition" : { "val" : "Adult neuron that expresses tachykinin (FBgn0037976), whose cell body is located in the lateral posterior protocerebrum and that innervates the superior median protocerebrum and the fan-shaped body. One cluster of around 10 cell bodies is found per hemisphere (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult LPP2 neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "lateral posterior protocerebral LPP2 tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110043" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110044", "meta" : { "definition" : { "val" : "Adult neuron that expresses tachykinin (FBgn0037976) and whose cell body is located in the posterior protocerebrum. One cluster of around 12 cell bodies is found per hemisphere (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult LPP1 neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "posterior protocerebral LPP1 tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110044" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110045", "meta" : { "definition" : { "val" : "Adult neuron that expresses tachykinin (FBgn0037976) and whose cell body is located in the median posterior protocerebrum. One cluster of around 3 cell bodies is found per hemisphere (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult MPP neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] }, { "pred" : "hasRelatedSynonym", "val" : "median posterior protocerebral MPP tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110045" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110046", "meta" : { "definition" : { "val" : "Adult neuron that expresses tachykinin (FBgn0037976) whose cell body is located in the cortex of the anterior deuterocerebrum close to the antennal lobes. There are about 8 pairs of cell bodies per hemisphere (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult TC1 neuron", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "deuterocerebrum DC tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110046" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110047", "meta" : { "definition" : { "val" : "Adult neuron that expresses tachykinin (FBgn0037976) and whose cell body is located at the base of the optic lobe. There are about 10 pairs of cell bodies per hemisphere (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult OL neuron", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "optic lobe tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110047" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110048", "meta" : { "definition" : { "val" : "Larval neuron that expresses tachykinin (FBgn0037976) whose cell body is located in the abdominal neuromere. The number of neurons increases throughout larval development: 1 pair at first instar, two to three at second instar, 4 to 8 pairs at early third instar, 7 to 10 late third instar and 7 to 8 at prepupal stage P1 (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining. At prepupal stage P1, 7 additional pairs of labelled neurons are observed in the lateral abdominal ganglia. They are weakly labelled by immunostaining, but more strongly labelled by in situ hybridization (Winther et al., 2003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "abdominal ganglion tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110049", "meta" : { "definition" : { "val" : "Adult neuron that expresses tachykinin (FBgn0037976) whose cell body is located in the anterior subesophageal ganglion and innervates the thoracico-abdominal ganglia. There is one neuron per hemisphere (Winther et al., 2003; Siviter et al., 2000).", "xrefs" : [ "FlyBase:FBrf0130087", "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining (Winther et al., 2003; Siviter et al., 2000)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult tachykinin DN neuron", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasExactSynonym", "val" : "anterior large descending neuron DN", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasExactSynonym", "val" : "tachykinin descending neuron", "xrefs" : [ "FlyBase:FBrf0130087" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110050", "meta" : { "definition" : { "val" : "Adult neuron that expresses tachykinin (FBgn0037976), whose cell body is located in the tritocerebrum and which innervates, among other regions, the fan-shaped body. One cluster of around 16 cell bodies is found per hemisphere (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "comments" : [ "Tachykinin expression was observed by in situ hybridization and immunostaining." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tritocerebral neuron TC1", "xrefs" : [ "FlyBase:FBrf0130087" ] }, { "pred" : "hasRelatedSynonym", "val" : "tritocerebrum tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110050" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110051", "meta" : { "definition" : { "val" : "Adult neuron that expresses tachykinin (FBgn0037976) whose cell body is located in the thoracic-abdominal ganglion. There are 10 to 12 pairs in the prothoracic, 5 to 6 in the mesothoracic, 8 to 12 in the metathoracic and 1 to 2 in the abdominal neuromeres (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "thoracico-abdominal tachykinin neuron", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110052", "meta" : { "definition" : { "val" : "Larval neuron that expresses leucokinin (FBgn0028418) whose cell body is located in the lateral protocerebrum and projects towards the midline forming a loop and innervating the corpus cardiacum and the prothoracic gland within the ring gland. There are three to four neuron per hemisphere (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "comments" : [ "These neurons are not labelled by a leucokinin antibody, suggesting they correspond to faint leucokinergic cells appearing during the second and third instar (de Haro et al., 2010)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval ALK neuron", "xrefs" : [ "FlyBase:FBrf0209907" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110053", "meta" : { "definition" : { "val" : "Larval neuron that expresses leucokinin (FBgn0028418) whose cell body is located ventrolaterally in each neuromere of the abdominal ganglion. Each neuron produces a pair of axons, one of which projects dorsally and emerges from the ventral ganglia through an anterior segmental nerve of each hemineuromere. The other branch divides centrally into two branches: one send its neurites to the anterior ABLK and the other ventrally to the posterior ABLK. From each segmental nerve one axon emerges that synapses to the adjacent segment border muscle, close to the spiracle (Haro et al., 2010; Landgraf et al., 2003). These synapses lack the typical morphology of motor-neuron synapses (Landgraf et al., 2003) and are not glutamatergic (Haro et al., 2010). There is one pair of neurons in each of seven abdominal neuromeres (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0160715", "FlyBase:FBrf0209907" ] }, "comments" : [ "The more anterior ABLK neurons are connected to the leucokinin SELK neuron of the subesophageal ganglion in the dorsal-medial tract (de Haro et al., 2010). Landgraf et al., 2003, also detected leucokinin positive terminals on A1-7 ventral longitudinal (VL) muscles. It is not clear where these neuron originate from." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval ABLK neuron", "xrefs" : [ "FlyBase:FBrf0209907" ] }, { "pred" : "hasRelatedSynonym", "val" : "LK-immunoreactive cell", "xrefs" : [ "FlyBase:FBrf0155902" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110054", "meta" : { "definition" : { "val" : "Adult neuron that expresses leucokinin (FBgn0028418) whose cell body is located dorsally in the abdominal ganglion, with their cell bodies and neurites resembling a ladder-like appearance. From each neuron emerge two axons: one fasciculates with the abdominal nerves and the other branches toward the anterior and posterior ABLK.", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "comments" : [ "The more anterior ABLK neurons are connected to the leucokinin SELK neuron of the subesophageal ganglion in the dorsal-medial tract (de Haro et al., 2010)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult ABLK neuron", "xrefs" : [ "FlyBase:FBrf0209907" ] }, { "pred" : "hasRelatedSynonym", "val" : "LK-immunoreactive cell", "xrefs" : [ "FlyBase:FBrf0155902" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110055", "meta" : { "definition" : { "val" : "Larval neuron that expresses leucokinin (FBgn0028418) whose cell body is located in the subesophageal ganglion. The axon colaterals in the brain form a complex pattern of thin neurites that project in the subesophageal ganglion and tritrocerebrum. The axons extend along the ventral nerve cord innervating the contralateral side and to form a ladder-like structure. The axons connect to the end of the abdominal ganglia in a terminal plexus. The axons that extend along the ventral nerve cord connect to the leucokinin ABLK neurons. There are two to three pairs of neurons (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval SELK neuron", "xrefs" : [ "FlyBase:FBrf0209907" ] }, { "pred" : "hasRelatedSynonym", "val" : "LK-immunoreactive cell", "xrefs" : [ "FlyBase:FBrf0155902" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110056", "meta" : { "definition" : { "val" : "Adult neuron that expresses leucokinin (FBgn0028418) whose cell body is located in the ventromedial subesophageal ganglion. The axon collaterals in the brain innervate the subesophageal ganglion ipsi- and contralaterally, the tritocerebrum and fasciculate with the maxillary and labral nerve. Four axons extend along the cervical connective to the ventral nerve cord. The axons that extend along the ventral nerve cord connect to the leucokinin ABLK neurons. There are two to three pairs of neurons (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult SELK neuron", "xrefs" : [ "FlyBase:FBrf0209907" ] }, { "pred" : "hasRelatedSynonym", "val" : "LK-immunoreactive cell", "xrefs" : [ "FlyBase:FBrf0155902" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110057", "meta" : { "definition" : { "val" : "Larval neuron that expresses leucokinin (FBgn0028418) whose cell body is located in the anterodorsal brain and projects to a ventromedial location. The main neurite bifurcates into two collaterals during late larval stages, with the main one being in close proximity to the inner antenno-cerebral tract. The collaterals arborise close to the mushroom body pedunculus and calyx. There is one neuron per hemisphere (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "larval LHKL neuron", "xrefs" : [ "FlyBase:FBrf0209907" ] }, { "pred" : "hasRelatedSynonym", "val" : "anterodorsal LK-immunopositive neuron", "xrefs" : [ "FlyBase:FBrf0155902" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110058", "meta" : { "definition" : { "val" : "Adult neuron that expresses leucokinin (FBgn0028418) and whose large cell body is located in the lateral horn. Its thin processes run ventrally before bifurcating into two main collateral branches which innervate the superior lateral and median protocerebrum, the region around the mushroom body pedunculus and the mushroom body calyx. There is one neuron per hemisphere (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LHLK", "xrefs" : [ "FlyBase:FBrf0155902" ] }, { "pred" : "hasExactSynonym", "val" : "adult LHKL neuron", "xrefs" : [ "FlyBase:FBrf0209907" ] }, { "pred" : "hasExactSynonym", "val" : "lateral horn leucokinin neuron", "xrefs" : [ "FlyBase:FBrf0155902" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110058" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-08T02:39:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110059", "meta" : { "definition" : { "val" : "Adult neuron that expresses leucokinin (FBgn0028418) and whose cell body is located superficially in the posterior side of the median protocerebrum (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "comments" : [ "These neurons are not labelled by a leucokinin antibody (de Haro et al., 2010)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult ALK neuron", "xrefs" : [ "FlyBase:FBrf0209907" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110059" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-12T10:24:58Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110060", "meta" : { "definition" : { "val" : "A larval neuron that expresses tachykinin (FBgn0037976) and that is located in the central nervous system (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "larval tachykinin neuron of the CNS", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-12T11:28:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110061", "meta" : { "definition" : { "val" : "An adult neuron that expresses tachykinin (FBgn0037976) and that is located in the central nervous system (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : " adult tachykinin neuron of the CNS", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-12T11:28:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110062", "meta" : { "definition" : { "val" : "Pupal neuron that expresses tachykinin (FBgn0037976) and that is located in the central nervous system (Winther et al., 2003).", "xrefs" : [ "FlyBase:FBrf0162212" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "pupal tachykinin neuron of the CNS", "xrefs" : [ "FlyBase:FBrf0162212" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-12T11:28:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110063", "meta" : { "definition" : { "val" : "A larval neuron that expresses leucokinin (FBgn0028418) and that is located in the central nervous system (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "larval leucokinin neuron of the CNS", "xrefs" : [ "FlyBase:FBrf0209907" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-12T11:28:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110064", "meta" : { "definition" : { "val" : "An adult neuron that expresses leucokinin (FBgn0028418) and that is located in the central nervous system (de Haro et al., 2010).", "xrefs" : [ "FlyBase:FBrf0155902", "FlyBase:FBrf0209907" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : " adult leucokinin neuron of the CNS", "xrefs" : [ "FlyBase:FBrf0209907" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-12T11:28:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110065", "meta" : { "definition" : { "val" : "An intrinsic columnar neuron of the visual system whose cell body is located in the medulla cortex and that has a main projection into the lamina making wide-field arborizations in the distal lamina. These neurons also arborize in the medulla (Hasegawa et al., 2011).", "xrefs" : [ "FlyBase:FBrf0213020" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Lawf2", "xrefs" : [ "FlyBase:FBrf0213020" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110065" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-13T11:05:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110066", "meta" : { "definition" : { "val" : "Proximal medullary amacrine neuron that branches at the proximal surface of the medulla, with both branches forming a broad terminal arbor in medulla layers M8 to M10 (Hasegawa et al., 2011).", "xrefs" : [ "FlyBase:FBrf0213020" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Pm3", "xrefs" : [ "FlyBase:FBrf0213020" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110066" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-13T11:05:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110067", "meta" : { "definition" : { "val" : "Transmedullary Y neuron that terminates in lobula layer 4 and lobula plate. It displays arborizations in medulla layers M1, M4, M5, M8, M9 and M10 (Hasegawa et al., 2011).", "xrefs" : [ "FlyBase:FBrf0213020" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Tm27Y", "xrefs" : [ "FlyBase:FBrf0213020" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110067" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-13T11:05:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110068", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that branches extensively in medulla layer M6 and extends small centrifugal processes to medulla layer M4 (Gao et al., 2008, Hasegawa et al., 2011). In medulla layer M6, it is postsynaptic to photoreceptor cell R7 and presynaptic to Tm5. It also makes synaptic contacts with Tm9 (in M4) (Gao et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0206213", "FlyBase:FBrf0213020" ] }, "comments" : [ "Connectivity inferred from EM reconstructions from a single EM section. The subtype of Tm5 was not specified. The neurotransmitter was assessed in cells labelled with a glutamate Gal4 driver P{GawB}VGlut[OK371] [FBti0076967] (Gao et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Dm8a", "xrefs" : [ "FlyBase:FBrf0213020" ] }, { "pred" : "hasRelatedSynonym", "val" : "Dm8", "xrefs" : [ "FlyBase:FBrf0049410" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110068" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-13T11:05:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110069", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that branches in medulla layers M6, M7 and M8 (Hasegawa et al., 2011).", "xrefs" : [ "FlyBase:FBrf0213020" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Dm8b", "xrefs" : [ "FlyBase:FBrf0213020" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110069" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-13T11:05:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110070", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron with arborizations in medulla layers M1, M2, M4-M10 (Hasegawa et al., 2011).", "xrefs" : [ "FlyBase:FBrf0213020" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Mi10b", "xrefs" : [ "FlyBase:FBrf0213020" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110070" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-13T11:05:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110071", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layers 1 and 4 with bleb-like terminal arborizations. It has fine arborizations in medulla layers M1, M4, and M5, and has bleb-type arborization in medulla layers M1, M4, M9 and M10 (Fischbach and Dittrich, 1989). It has a small branch at medulla layer M8 that projects towards medulla layer M10 (Hasegawa et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0213020" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Tm3b", "xrefs" : [ "FlyBase:FBrf0213020" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110071" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-13T11:05:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110072", "meta" : { "definition" : { "val" : "Subtype of the transmedullary neuron Tm5. It is very similar to the subtype Tm5b, differing from it by the size and shape of its arborisation, which is very extensive in medulla layer M6. It receives synaptic contacts from photoreceptor cell R7 and laminar cell L3 (Gao et al., 2008). ", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0206213" ] }, "comments" : [ "Connectivity inferred from EM reconstructions from a single medulla column. The cell reconstructed resembled Tm5a (Gao et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Tm5b", "xrefs" : [ "FlyBrain_NDB:10157" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110072" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-14T03:31:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110073", "meta" : { "definition" : { "val" : "Subtype of the transmedullary neuron Tm5. It is very similar to the subtype Tm5a, differing from it by the size and shape of its arborisation, which extends across distal and proximal medulla layers (Gao et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0206213" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Tm5b", "xrefs" : [ "FlyBrain_NDB:10157" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110073" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-14T03:31:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110074", "meta" : { "definition" : { "val" : "Subtype of the transmedullary neuron Tm5. It differs from the subtypes Tm5a and Tm5b by its arborization pattern. It has dendritic terminals in medulla layer M1 and projects to lobula layers 4 and 5. It is a glutamatergic neuron (Gao et al., 2008).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0206213" ] }, "comments" : [ "The neurotransmitter was assessed in cells labelled with a glutamate Gal4 driver P{GawB}VGlut[OK371] [FBti0076967] (Gao et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Tm5c", "xrefs" : [ "FlyBrain_NDB:10157" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110074" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-14T03:31:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110075", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layer 4. It also has arborizations in medulla layers M2, M3, M4 and M9. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Tm4a", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110075" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110076", "meta" : { "definition" : { "val" : "Transmedullary Y neuron that terminates in lobula layer 3 and lobula plate layer 1. It displays arborizations in medulla layers M2, M3 and M9. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "TmY12", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110076" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110077", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layers 5 and 6. It also has arborizations in medulla layers M4, M5, M6 and M7. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaTmnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Tmnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110077" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110078", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layer 5. It also has arborizations in medulla layers M5, M6, M7, M8 and M9. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaTmnew2", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Tmnew2", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110078" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110079", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layer 1. It also has arborizations in medulla layers M4, M5, M7, M8 and M9. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ChaTmnew3", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Tmnew3", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110079" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110080", "meta" : { "definition" : { "val" : "T neuron whose cell body sits in the cortex adjacent to the gap between the medulla and lobula plate. Its cell body fibers project through this gap before branching in the second optic chiasm. One branch projects into medulla layer M10, the other branch forms a terminal arborization in lobula layers 1 and 2 and lobula plate layer 1. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaTnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Tnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110080" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110081", "meta" : { "definition" : { "val" : "Transmedullary Y neuron that terminates in lobula layers 2, 3 and 4 and layer 1 of lobula plate. It displays arborizations in medulla layers M4 to M9. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaTmYnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "TmYnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110081" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110082", "meta" : { "definition" : { "val" : "Medullary tangential neuron with extensive branching that covers the proximal medulla. It arborizes in layers M3 to M9. Its cell body lies outside the medulla rind, close to the serpentine layer. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "This cell was only observed once. The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaMtnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Mtnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110083", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron which projects along one medulla column without forming many lateral branches until it reaches layers M9 and M10, where it arborizes extensively. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaMinew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Minew1", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110083" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110084", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron that forms extensive fine layered arborizations in medulla layers M3, M4, M5, M8 and M9. It is very similar to Mi10, except for its fine arborization pattern. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaMinew2", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Minew2", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110084" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110085", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron that forms arborizations in medulla layers M3 to M7. It is very similar to Dm3, except that it shows blob-like protrusions in its terminals. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "This cell was only observed once. The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaMinew3", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Minew3", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110085" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110086", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron that arborizes in lobula layers 3, 4, 5 and 6 and extends its processes to the central brain. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaLcnnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Lcnnew1", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110087", "meta" : { "definition" : { "val" : "Lobula intrinsic neuron that arborizes in lobula layers 2, 3, 4 and 5 and extends its processes to the central brain. It is a cholinergic neuron (Varija Raghu et al., 2011)", "xrefs" : [ "FlyBase:FBrf0049410", "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaLinew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Linew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "Loinew1", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110087" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110088", "meta" : { "definition" : { "val" : "A lobula plate intrinsic neuron that arborizes in lobula plate layers 2 to 4. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "LPi1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110089", "meta" : { "definition" : { "val" : "A lobula plate intrinsic neuron that arborizes in lobula plate layers 1 and 2. It is a cholinergic neuron (Varija Raghu et al., 2011).", "xrefs" : [ "FlyBase:FBrf0212356" ] }, "comments" : [ "The neurotransmitter was assessed by co-labelling cells with a Cha-GAL4.7.4 driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ChaLPinew1", "xrefs" : [ "FlyBase:FBrf0212356" ] }, { "pred" : "hasRelatedSynonym", "val" : "LPinew1", "xrefs" : [ "FlyBase:FBrf0212356" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110090", "meta" : { "definition" : { "val" : "Transmedullary neuron that terminates in lobula layers 2 and 3. It also has arborizations in medulla layers M2, M4, M5, M6 and M7. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Tmnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutTmnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110090" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110091", "meta" : { "definition" : { "val" : "Transmedullary Y neuron that terminates in lobula layer 1 and in the four layers of the lobula plate. It displays arborizations in medulla layers M5, M8, M9 and M10. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "TmYnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutTmYnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110091" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110092", "meta" : { "definition" : { "val" : "Y neuron with arborizations in medulla layers M8, M9 and M10, and layer 1 of both lobula and lobula plate. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Ynew1", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutYnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110092" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110093", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron that forms arborizations in medulla layers M5 to M7 and whose cell body is in the posterior part of the medulla. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mi Amnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutMi Amnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110093" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110094", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron which projects along one medulla column without forming many lateral branches until it reaches layers M8 and M9, where it arborizes extensively. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Minew1", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutMinew1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110094" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:15:40Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110095", "meta" : { "definition" : { "val" : "Distal medullary amacrine neuron that branches extensively in medulla layers M1 to M4, with blob-like protrusions at the terminals. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Dmnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutDmnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110095" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110096", "meta" : { "definition" : { "val" : "Medullary intrinsic neuron which arborizes in medulla layer M1 and then projects along one medulla column without forming many lateral branches until it reaches layers M8 and M9, where it arborizes extensively. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Minew2", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutMinew2", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110096" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:15:40Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110097", "meta" : { "definition" : { "val" : "Medullary tangential neuron that branches extensively to cover the whole medulla, except for layers M1 and M10. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mtnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutMtnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110098", "meta" : { "definition" : { "val" : "Medullary tangential neuron that branches extensively in medulla layers M4 to M7. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Mtnew2", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutMtnew2", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110099", "meta" : { "definition" : { "val" : "Translobula plate neuron with dendritic terminals in lobula layers 4 to 6 and in all layers of the lobula plate. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Tlpnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutTlpnew1", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "xrefs" : [ { "val" : "VFB:FBbt_00110099" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110100", "meta" : { "definition" : { "val" : "An extrinsic columnar neuron that arborizes in lobula layers 3, 4 and 5 and extends its processes to the central brain. It is a glutamatergic neuron (Raghu and Borst, 2011).", "xrefs" : [ "FlyBase:FBrf0213690" ] }, "comments" : [ "The neurotransmitter was assessed by labelling cells with a vGlut[CNSIII]-Gal4 driver [FBti0129148] (Raghu and Borst, 2011)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Lcnnew2", "xrefs" : [ "FlyBase:FBrf0213690" ] }, { "pred" : "hasRelatedSynonym", "val" : "vGlutLcnnew2", "xrefs" : [ "FlyBase:FBrf0213690" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-15T10:03:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110101", "meta" : { "definition" : { "val" : "A mushroom body ventral lobe arborizing neuron 2 that innervates across the shaft of the alpha lobe of the ipsilateral mushroom body and projects to the middle superiormedial protocerebrum just posterior to the vertical lobes and the dorsal lateral horn of both hemispheres (Séjourné et al., 2011).", "xrefs" : [ "FlyBase:FBrf0214029" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-V2 alpha", "xrefs" : [ "FlyBase:FBrf0214029" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-19T11:38:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110102", "meta" : { "definition" : { "val" : "A mushroom body ventral lobe arborizing neuron 2 that innervates across the shaft of the alpha' lobe of the ipsilateral mushroom body and projects to the middle superiormedial protocerebrum just posterior to the vertical lobes and the ventral and medial domains of the lateral horn of both hemispheres (Séjourné et al., 2011).", "xrefs" : [ "FlyBase:FBrf0214029" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MB-V2 alpha'", "xrefs" : [ "FlyBase:FBrf0214029" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-12-19T11:38:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110103", "meta" : { "definition" : { "val" : "Most anterior S-type chemosensilla of the labellum.", "xrefs" : [ "FlyBase:FBrf0137194", "FlyBase:FBrf0152351", "FlyBase:FBrf0212834" ] }, "comments" : [ "Naming of sensilla is based on figure 1A of Weiss et al., (2011). There is no correspondence in Hiroi et al., (2002). Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-12T10:10:03Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110104", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the intersegmental nerve (ISN). It is the most medially located peripheral glial cell, close to the transition zone between the CNS and the PNS (exit area). It develops from neuroblast 1-3 (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG1 can be variable. It is the most medial cell 63% of the time, but it can also be found at the positions of ePG2 (7%) or ePG3 (31%). This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG1", "xrefs" : [ "FlyBase:FBrf0204826" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGA", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGM1", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGM2", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110105", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the segmental nerve (SN). It is located in the transition zone between the CNS and the PNS (exit area), laterally to ePG1 and medially to ePG3. It develops from neuroblast 5-6 (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG2 is variable. It is the middle cell of the exit zone 38% of the time, but it can also be found at the positions of ePG1 (18%) or ePG3 (44%). This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG2", "xrefs" : [ "FlyBase:FBrf0204826" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGA", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGM1", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGM2", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110106", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the intersegmental nerve (ISN). It is the most lateral cell located in the transition zone between the CNS and the PNS (exit area), laterally to ePG2. It develops from neuroblast 1-3 (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG3 is variable. It is the most lateral cell of the exit zone 46% of the time, but it can also be found at the positions of ePG1 (8%) or ePG2 (46%). This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG3", "xrefs" : [ "FlyBase:FBrf0204826" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGA", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGM1", "xrefs" : [ "FlyBase:FBrf0054242" ] }, { "pred" : "hasRelatedSynonym", "val" : "EGM2", "xrefs" : [ "FlyBase:FBrf0054242" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110108", "meta" : { "definition" : { "val" : "An embryonic peripheral glial cell located distally to the transition zone between the CNS and the PNS (exit area) on the intersegmental nerve near the point where ii splits from the segmental nerve (SN). 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This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110109", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the intersegmental nerve (ISN) and located laterally to ePG5. It develops from neuroblast 2-5 (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG6 is somewhat variable: it is found at its position 87% of the time. Sometimes, it can be found at the positions of ePG5 (4%) or ePG7 (9%). This analysis was done using specific cell markers and taking into account which nerve the cell is associated with. However, it is not possible to distinguish ePG6 from ePG8 without taking into account the position of the cell body (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG6", "xrefs" : [ "FlyBase:FBrf0204826" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110110", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the intersegmental nerve (ISN) and located laterally to ePG6. It develops from neuroblast 1-3 (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG7 is variable: it is found at its position 70% of the time. It can also be found at the positions of ePG6 (8%), ePG8 (21%) or ePG9 (1%). This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG7", "xrefs" : [ "FlyBase:FBrf0204826" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110111", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the intersegmental nerve (ISN) laterally to ePG7. It develops from neuroblast 2-5 (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG7 is variable: it is found at its position 70% of the time. It can also be found at the positions of ePG7 (21%) or ePG9 (9%). This analysis was done using specific cell markers and taking into account which nerve the cell is associated with. However, it is not possible to distinguish ePG6 from ePG6 wihtout taking into account the position of the cell body (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG8", "xrefs" : [ "FlyBase:FBrf0204826" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110112", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the intersegmental nerve (ISN) laterally to ePG8. It develops from neuroblast 1-3 (von Hilchen et al., 2008).", "xrefs" : [ "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG9 is somewhat variable: it is found at its position 92% of the time. It can also be found at the positions of ePG7 (2%) or ePG8 (6%). This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG9", "xrefs" : [ "FlyBase:FBrf0204826" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110114", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the abdominal dorsal bipolar neuron dbp, posterior to the ISN (von Hilchen et al., 2008). It develops from a sensory organ precursor cell (Bodmer et al., 1989).", "xrefs" : [ "FlyBase:FBrf0050677", "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG11 is fixed: it is found at its position 100% of the time. This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG11", "xrefs" : [ "FlyBase:FBrf0204826" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110115", "meta" : { "definition" : { "val" : "Embryonic peripheral glial cell associated with the transverse nerve (TN), anterior to the ISN and lateral to ePG8 (von Hilchen et al., 2008). It develops from a sensory organ precursor cell (Bodmer et al., 1989).", "xrefs" : [ "FlyBase:FBrf0050677", "FlyBase:FBrf0204826" ] }, "comments" : [ "The position of the cell body of ePG12 is fixed: it is found at its position 100% of the time. This analysis was done using specific cell markers and taking into account which nerve the cell is associated with (von Hilchen et al., 2008)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ePG12", "xrefs" : [ "FlyBase:FBrf0204826" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-19T03:05:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110116", "meta" : { "definition" : { "val" : "Larval neurosecretory abdominal neuron whose cell body is located near the ventrolateral tract of the midline. It projects its axon dorsomedially through the neuropil passing below the central intermediate and dorsal median tracts. The axon reaches the midline near the transverse projection 3 where it joins with the axon of the contralateral Va neuron. The two axons project dorsally together a short distance before diverging and forming a loop inside the neuropil and dorsal cortex. The loop closes just before the neurites leave the ventral ganglion and innervate the abdominal neurohemal organ. There are 3 bilateral pairs of Va neurons, one bilateral pair in each of the first 3 abdominal neuromeres (Santos et al., 2007).", "xrefs" : [ "FlyBase:FBrf0201188" ] }, "comments" : [ "The neuron is identified as neurosecretory because it expresses neuropeptides and innervates a neurohemal organ (Santos et al., 2007)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-24T02:09:35Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110117", "meta" : { "definition" : { "val" : "Bilaterally paired neurosecretory organ of the abdominal segments, formed by the axons of Va neurons when they leave the ventral ganglion, pass through the medial nerve and innervate the proximal part of the transverse nerve of the first 3 abdominal neuromeres (Santos et al., 2007).", "xrefs" : [ "FlyBase:FBrf0201188" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "aPSO", "xrefs" : [ "FlyBase:FBrf0214320" ] }, { "pred" : "hasExactSynonym", "val" : "abdominal perisympathetic organ", "xrefs" : [ "FlyBase:FBrf0214320" ] }, { "pred" : "hasRelatedSynonym", "val" : "perisympathetic organ", "xrefs" : [ "FlyBase:FBrf0201188" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-24T02:09:35Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_00110118", "meta" : { "definition" : { "val" : "Larval neuro-secretory neuron whose cell body is located in the superior medial protocerebrum. There is one cell per brain hemisphere (McCormick and Nichols, 1993) and its axon innervates the corpus cardiacum (Wegener et al., 2011).", "xrefs" : [ "FlyBase:FBrf0065487", "FlyBase:FBrf0214320" ] }, "comments" : [ "The neuron is identified as neurosecretory because it expresses neuropeptides and innervates a neurohemal organ (McCormick and Nichols, 1993; Wegener et al., 2011)." ], "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "xrefs" : [ { "val" : "VFB:FBbt_00110118" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mmc46" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-24T02:09:35Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000119", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000122", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000595", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cluster II muscle founder cell", "xrefs" : [ "FlyBase:FBrf0183937" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000596", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cluster II muscle founder cell", "xrefs" : [ "FlyBase:FBrf0183937" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000597", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cluster II muscle founder cell", "xrefs" : [ "FlyBase:FBrf0183937" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000611", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cluster III muscle founder cell", "xrefs" : [ "FlyBase:FBrf0183937" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000615", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cluster I muscle founder cell", "xrefs" : [ "FlyBase:FBrf0183937" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000625", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cluster III muscle founder cell", "xrefs" : [ "FlyBase:FBrf0183937" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01000632", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cluster I muscle founder 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"basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01005220", "meta" : { "definition" : { "val" : "Individual row of denticles in a denticle belt.", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_01005747", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_02000000", "meta" : { "definition" : { "val" : "An ommatidial subtype located in a single row at the dorsal margin of the eye. This ommatidial subtype is specialised to detect the e-vector of polarized sunlight.", "xrefs" : [ "FlyBase:FBrf0180690" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_02000001", "meta" : { "definition" : { "val" : "Ommatidial subtype with stochastic distribution throughout the retina making up about 30% of all ommatidia. This ommatidial subtype is specialised to detect short wavelengths (UV + blue).", "xrefs" : [ "FlyBase:FBrf0180690" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_02000002", "meta" : { "definition" : { "val" : "Ommatidial subtype with stochastic distribution throughout the retina, making up about 70% of all ommatidia. This ommatidial subtype is specialised to detect longer wavelengths (UV + green) than yellow ommatidia.", "xrefs" : [ "FlyBase:FBrf0180690" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_02000003", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0180690" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_02000004", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0180690" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_02000005", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0180690" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_02000006", "meta" : { "definition" : { "val" : ".", "xrefs" : [ "FlyBase:FBrf0180690" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_10000445", "meta" : { "definition" : { "val" : "A primary branch of the tracheal system.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_10005220", "meta" : { "definition" : { "val" : "A secondary branch of the tracheal system.", "xrefs" : [ "https://orcid.org/0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/fbbt#EmbDevSlim", "http://purl.obolibrary.org/obo/fbbt#cur" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "fly_anatomy.ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FBbt_10005245", "meta" : { "comments" : [ "Not clear what, if anything, this corresponds to. There are only two longitudinal trunks in the embryonic/larval tracheal system - dorsal and lateral. Perhaps could correspond to lateral tunk? 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This forms from the endodermal component of the amnioproctodeal invagination when it undergoes an epithelial-to-mesenchymal transition during stage 10 and so becomes distinct from the hindgut primordium with which it was previously contiguous. This primordium forms two lobes that extend laterally on either side of the yolk. During early stage 11, the interstitial cell precursors delaminate from the tip of the primordium. During stage 11/12 the precursors of the adult posterior midgut become distinct and the remaining primordium undergoes a mesenchymal to epithelial transition after which (during stage 12) fusion of anterior and posterior midgut primordia begins, forming the fused midgut primordium.", "xrefs" : [ "FlyBase:FBrf0089570" ] }, "comments" : [ "This primordium may be temporally subdivided into the inclusive posterior midgut primordium, including adult midgut progenitors and the posterior midgut primordium proper, that contains only progenitors of the embryonic/larval midgut. However, the proper primordium exists only briefly during stage 12 and so we have chosen not to represent it in this ontology. 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Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.", "xrefs" : [ "GOC:pdt" ] }, "comments" : [ "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "molecular function" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0005554" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "molecular_function" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0003676", "lbl" : "nucleic acid binding", "type" : "CLASS", "meta" : { "definition" : { "val" : "Binding to a nucleic acid.", "xrefs" : [ "GOC:jl" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "base pairing" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0000496" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "molecular_function" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0003723", "lbl" : "RNA binding", "type" : "CLASS", "meta" : { "definition" : { "val" : "Binding to an RNA molecule or a portion thereof.", "xrefs" : [ "GOC:jl", "GOC:mah" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_drosophila", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#prokaryote_subset" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "base pairing with RNA" }, { "pred" : "hasRelatedSynonym", "val" : "poly(A) RNA binding" }, { "pred" : "hasRelatedSynonym", "val" : "poly(A)-RNA binding" }, { "pred" : "hasRelatedSynonym", "val" : "poly-A RNA binding" } ], "xrefs" : [ { "val" : "Reactome:R-HSA-203922" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0000498" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0044822" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "molecular_function" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0003824", "lbl" : "catalytic activity", "type" : "CLASS", "meta" : { "definition" : { "val" : "Catalysis of a biochemical reaction at physiological temperatures. 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When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cell or subcellular entity" }, { "pred" : "hasExactSynonym", "val" : "cellular component" }, { "pred" : "hasRelatedSynonym", "val" : "subcellular entity", "xrefs" : [ "NIF_Subcellular:nlx_subcell_100315" ] } ], "xrefs" : [ { "val" : "NIF_Subcellular:sao1337158144" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0008372" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "cellular_component" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0005622", "lbl" : "intracellular anatomical structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A component of a cell contained within (but not including) the plasma membrane. 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"basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001405", "lbl" : "anucleate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus.", "xrefs" : [ "Biology-online:Biology-online" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001406", "lbl" : "binucleate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei.", "xrefs" : [ "Biology-online:Biology-online" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001407", "lbl" : "mononucleate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus.", "xrefs" : [ "Biology-online:Biology-online" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001861", "lbl" : "fasciculated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve.", "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fascicled" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001959" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001873", "lbl" : "cylindrical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section.", "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "rod-like" }, { "pred" : "hasExactSynonym", "val" : "rod-shaped" }, { "pred" : "hasNarrowSynonym", "val" : "tubulate" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001203" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001908", "lbl" : "multinucleate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001987", "lbl" : "saccular", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance.", "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sacular" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "sacular" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001992", "lbl" : "cellularity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001993", "lbl" : "multicellular", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001995", "lbl" : "organismal quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality that inheres in an entire organism or part of an organism.", "xrefs" : [ "PATOC:CJM" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002006", "lbl" : "2-D shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.", "xrefs" : [ "PATOC:CJM" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "2-D projection" }, { "pred" : "hasRelatedSynonym", "val" : "cross-sectional" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002007", "lbl" : "convex 3-D shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.", "xrefs" : [ "PATOC:CJM" ] }, "comments" : [ "Use this term or an is_a child of this term when the entire shape of the object is known." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "xrefs" : [ { "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002013", "lbl" : "fasciculation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve.", "xrefs" : [ "answers.com:http://www.answers.com/" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002014", "lbl" : "structure, cavities", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002078", "lbl" : "hollow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within.", "xrefs" : [ "url:http://www.merriam-webster.com/dictionary/hollow" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-2061-091X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-09-18T02:19:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002124", "lbl" : "laminar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-2061-091X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-06T04:37:14Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002226", "lbl" : "subcylindrical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical.", "xrefs" : [ "url:http://www.thefreedictionary.com/Subcylindrical" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-2061-091X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-13T04:22:30Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002266", "lbl" : "3-D shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape that inheres in a 3 dimensional entity.", "xrefs" : [ "PATOC:OREGON" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-2061-091X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-05T12:31:16Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002309", "lbl" : "fiber shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter.", "xrefs" : [ "PATOC:DC" ] }, "comments" : [ "Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope)." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-2061-091X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-09-09T04:50:10Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002318", "lbl" : "superelliptic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt", "xrefs" : [ "wiktionary:superellipse" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Lamé curve" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-2061-091X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:45:16Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002505", "lbl" : "nucleated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-2061-091X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-21T05:44:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0010000", "lbl" : "maximally connected", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure.", "xrefs" : [ "GOC:dos" ] }, "comments" : [ "What counts as maximally connected may be relative to some specification of granularity." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-7073-9172" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-12-12T08:41:11Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0010001", "lbl" : "disconnected", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other.", "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-7073-9172" }, { "pred" : 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This includes, but is not limited to, cells , tissues, and components." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "http://orcid.org/0000-0001-7258-9596" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PR_000000001", "lbl" : "protein", "type" : "CLASS", "meta" : { "definition" : { "val" : "An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA, and any derivatives thereof.", "xrefs" : [ "PRO:DAN", "PRO:WCB" ] }, "comments" : [ "The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB]." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "natural protein", "xrefs" : [ "PRO:DAN" ] }, { "pred" : "hasNarrowSynonym", "val" : "native protein", "xrefs" : [ "IEDB:BP" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "protein" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PR_000018263", "lbl" : "amino acid chain", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organic amino compound that consists of amino acid residues (unmodified amino-acid residues and/or modified amino-acid residues) linked by peptide bonds or derivatives of such bonds.", "xrefs" : [ "PRO:DAN", "PRO:JSG" ] }, "comments" : [ "Category=polymer." ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "peptide", "xrefs" : [ "PRO:DAN" ] }, { "pred" : "hasNarrowSynonym", "val" : "polypeptide", "xrefs" : [ "PRO:DAN" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "protein" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PR_000036194", "lbl" : "eukaryotic protein", "type" : "CLASS", "meta" : { "definition" : { "val" : "A protein that is encoded in the genome of some Eukaryota.", "xrefs" : [ "PRO:DAN" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Eukaryota protein", "xrefs" : [ "PRO:DAN" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "protein" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PR_000050567", "lbl" : "protein-containing material entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity that minimally consists of a protein.", "xrefs" : [ "PRO:DAN" ] }, "comments" : [ "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566)." ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "protein", "xrefs" : [ "PRO:DAN" ] }, { "pred" : "hasNarrowSynonym", "val" : "protein aggregate", "xrefs" : [ "PRO:DAN" ] }, { "pred" : "hasNarrowSynonym", "val" : "protein complex", "xrefs" : [ "PRO:DAN" ] }, { "pred" : "hasNarrowSynonym", "val" : "protein-containing complex", "xrefs" : [ "PRO:DAN" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "protein" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000052", "lbl" : "characteristic of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." }, "comments" : [ "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "inheres in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this fragility is a characteristic of this vase" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this red color is a characteristic of this apple" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "inheres_in" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000053", "lbl" : "has characteristic", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Inverse of characteristic_of" }, "xrefs" : [ { "val" : "RO:0000053" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "bearer of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this apple is bearer of this red color" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this vase is bearer of this fragility" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "bearer_of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is bearer of" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "bearer_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000056", "lbl" : "participates in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process" }, "xrefs" : [ { "val" : "RO:0000056" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "participates in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this blood clot participates in this blood coagulation" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this input material (or this output material) participates in this process" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this investigator participates in this investigation" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "participates_in" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "participates_in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000057", "lbl" : "has participant", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process" }, "xrefs" : [ { "val" : "RO:0000057" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "has participant" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this blood coagulation has participant this blood clot" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this investigation has participant this investigator" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this process has participant this input material (or this output material)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_participant" }, { "pred" : "http://purl.org/dc/elements/1.1/source", "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "has_participant" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000079", "lbl" : "function of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence" }, "comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this catalysis function is a function of this enzyme" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "function_of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is function of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000080", "lbl" : "quality of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" }, "comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this red color is a quality of this apple" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A quality inheres in its bearer at all times for which the quality exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is quality of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "quality_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000081", "lbl" : "role of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" }, "comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this investigator role is a role of this person" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is role of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "role_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000085", "lbl" : "has function", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_function" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000086", "lbl" : "has quality", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" }, "xrefs" : [ { "val" : "RO:0000086" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this apple has quality this red color" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "has_quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000087", "lbl" : "has role", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this person has role this investigator role (more colloquially: this person has this role of investigator)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_role" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000091", "lbl" : "has disposition", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence" } } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000092", "lbl" : "disposition of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of has disposition" }, "comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ], "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002000", "lbl" : "boundary_of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "the surface of my skin is a 2D boundary of my body" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "2D_boundary_of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "boundary of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is 2D boundary of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is boundary of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "surface of" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002002", "lbl" : "has_boundary", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity" }, "xrefs" : [ { "val" : "RO:0002002" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my body has 2D boundary the surface of my skin" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-7073-9172" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has boundary" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_2D_boundary" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "has_boundary" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002005", "lbl" : "innervated_by", "type" : "PROPERTY", "meta" : { "xrefs" : [ { "val" : "RO:0002005" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-7073-9172" }, { "pred" : "http://purl.org/spar/cito/citesAsAuthority", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22402613" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "innervated_by" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002006", "lbl" : "has synaptic terminal of", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-7073-9172" }, { "pred" : "http://purl.org/spar/cito/citesAsAuthority", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22402613" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002013", "lbl" : "has regulatory component activity", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." }, "xrefs" : [ { "val" : "RO:0002013" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-05-24T09:30:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "has_regulatory_component_activity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002014", "lbl" : "has negative regulatory component activity", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." }, "comments" : [ "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." ], "xrefs" : [ { "val" : "RO:0002014" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-05-24T09:31:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "has_negative_regulatory_component_activity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002015", "lbl" : "has positive regulatory component activity", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." }, "comments" : [ "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. 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It is ended as a grouping for a diverse set of relations, all involving the process of evolution." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002323", "lbl" : "mereotopologically related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A mereological relationship or a topological relationship" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002324", "lbl" : "developmentally related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002327", "lbl" : "enables", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c enables p iff c is capable of p and c acts to execute p." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "catalyzes" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "executes" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is catalyzing" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is executing" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002328", "lbl" : "functionally related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." }, "xrefs" : [ { "val" : "RO:0002328" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "functionally_related_to" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002329", "lbl" : "part of structure that is capable of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "false" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002331", "lbl" : "involved in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved_in p if and only if c enables some process p', and p' is part of p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "actively involved in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "enables part of" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://wiki.geneontology.org/index.php/Involved_in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002333", "lbl" : "enabled by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of enables" }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002334", "lbl" : "regulated by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of regulates" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "xrefs" : [ { "val" : "RO:0002334" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "regulated by (processual)" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "regulated_by" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002335", "lbl" : "negatively regulated by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of negatively regulates" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "xrefs" : [ { "val" : "RO:0002335" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "negatively_regulated_by" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002336", "lbl" : "positively regulated by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of positively regulates" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "xrefs" : [ { "val" : "RO:0002336" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "positively_regulated_by" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002352", "lbl" : "input of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of has input" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "xrefs" : [ { "val" : "RO:0002352" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "input_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002353", "lbl" : "output of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of has output" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "xrefs" : [ { "val" : "RO:0002353" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "output_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002354", "lbl" : "formed as result of", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002404", "lbl" : "causally downstream of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of upstream of" }, "xrefs" : [ { "val" : "RO:0002404" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "causally_downstream_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002405", "lbl" : "immediately causally downstream of", "type" : "PROPERTY", "meta" : { "xrefs" : [ { "val" : "RO:0002405" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "immediately_causally_downstream_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002407", "lbl" : "indirectly positively regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "indirectly activates" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002579", "val" : "http://purl.obolibrary.org/obo/RO_0002213" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002409", "lbl" : "indirectly negatively regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "indirectly inhibits" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002579", "val" : "http://purl.obolibrary.org/obo/RO_0002212" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002410", "lbl" : "causally related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.", "xrefs" : [ "https://en.wikipedia.org/wiki/Causality" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative?\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002411", "lbl" : "causally upstream of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "xrefs" : [ { "val" : "RO:0002411" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "causally_upstream_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002412", "lbl" : "immediately causally upstream of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q." }, "xrefs" : [ { "val" : "RO:0002412" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002575", "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "immediately_causally_upstream_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002418", "lbl" : "causally upstream of or within", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "affects" } ], "xrefs" : [ { "val" : "RO:0002418" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "influences (processual)" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "causally_upstream_of_or_within" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002427", "lbl" : "causally downstream of or within", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of causally upstream of or within" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "xrefs" : [ { "val" : "RO:0002427" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "causally_downstream_of_or_within" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002428", "lbl" : "involved in regulation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002429", "lbl" : "involved in positive regulation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004049", "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002430", "lbl" : "involved in negative regulation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004050", "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002431", "lbl" : "involved in or involved in regulation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "OWL does not allow defining object properties via a Union" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "involved in or reguates" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002432", "lbl" : "is active in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", "xrefs" : [ "GOC:cjm", "GOC:dos" ] }, "comments" : [ "" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "enables activity in" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A protein that enables activity in a cytosol." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "executes activity in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002434", "lbl" : "interacts with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "in pairwise interaction with" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Considering relabeling as 'pairwise interacts with'" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" }, { "pred" : "http://www.w3.org/2004/02/skos/core#closeMatch", "val" : "http://purl.obolibrary.org/obo/MI_0914" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002436", "lbl" : "molecularly interacts with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "binds" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "molecularly binds with" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ECO_0000353" }, { "pred" : "http://www.w3.org/2004/02/skos/core#closeMatch", "val" : "http://purl.obolibrary.org/obo/MI_0915" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002447", "lbl" : "phosphorylates", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Axiomatization to GO to be added later" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002448", "lbl" : "directly regulates activity of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.\n\nA and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "molecularly controls" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0003-4639-4431" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002449", "lbl" : "directly negatively regulates activity of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. \nFor example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "molecularly decreases activity of" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0003-4639-4431" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "directly inhibits" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002450", "lbl" : "directly positively regulates activity of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. \nFor example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "molecularly increases activity of" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0003-4639-4431" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "directly activates" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002464", "lbl" : "helper property (not for use in curation)", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002479", "lbl" : "has part that occurs in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002481", "lbl" : "is kinase activity", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002485", "lbl" : "receives input from", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See notes for inverse relation" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002486", "lbl" : "sends output to", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002500", "lbl" : "causal agent in process", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002501", "lbl" : "causal relation between processes", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002502", "lbl" : "depends on", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/BFO_0000169" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002506", "lbl" : "causal relation between entities", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002559", "lbl" : "causally influenced by", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "causally influenced by (entity-centric)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002563", "lbl" : "interaction relation helper property", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002564", "lbl" : "molecular interaction relation helper property", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002566", "lbl" : "causally influences", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size)." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0003-4639-4431" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "causally influences (entity-centric)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002577", "lbl" : "system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity consisting of multiple components that are causally integrated." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.jbiomedsem.com/content/4/1/43" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002578", "lbl" : "directly regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p directly regulates q iff p is immediately causally upstream of q and p regulates q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "xrefs" : [ { "val" : "RO:0002578" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "directly regulates (processual)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002575", "val" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "directly_regulates" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002581", "lbl" : "is a defining property chain axiom", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL" } } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002582", "lbl" : "is a defining property chain axiom where second argument is reflexive", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. 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