duo.owl
type: Ontology
version IRI: duo.owl
imports: iao.owl
contributor: Stephanie Dyke
contributor: Giselle Kerry
contributor: Moran Ncabili
contributor: Gregory Rushton
contributor: David An
contributor: Dylan Spalding
creator: Melanie Courtot

definition
type: AnnotationProperty

is restricted to
type: ObjectProperty
definition: An object property linking a consent code to a specific restriction which further constrains it, such as research should be restricted to a specific disease or geographical location.
id: DUO:0000010

disease
type: Class
subclass of: BFO_0000016
definition: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. [url:http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf ]
id: DOID:4

consent code
type: Class
subclass of: IAO_0000027
definition: A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used.
id: DUO:0000001

consent code primary category
type: Class
subclass of: consent code
definition: A categorical data item indicating the primary category the consent code belongs to according to Dyke et al. 2016.
id: DUO:0000002

consent code secondary category
type: Class
subclass of: consent code
definition: A categorical data item indicating the secondary category the consent code belongs to according to Dyke et al. 2016.
id: DUO:0000003

no restriction
type: Class
subclass of: consent code primary category
definition: This consent code primary category indicates there is no restriction on use.
id: DUO:0000004
comment: Note: the NRES alternative term may be confusing as in the UK it also stands for National Research Ethics Service

general research use and clinical care
type: Class
subclass of: consent code primary category
definition: This primary category consent code indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry.
id: DUO:0000005

health/medical/biomedical research and clinical care
type: Class
subclass of: consent code primary category
definition: This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
id: DUO:0000006

disease-specific research and clinical care
type: Class
subclass of: consent code primary category
subclass of: Restriction
  on property: is restricted to
  some values from: disease
definition: This primary category consent code indicates that use is allowed provided it is related to the specified disease.
id: DUO:0000007

population origins or ancestry research
type: Class
subclass of: consent code primary category
definition: This primary category consent code indicates that use of the data is limited to the study of population origins or ancestry.
IAO_0000118: population origins/ancestry research
id: DUO:0000011

research-specific restrictions
type: Class
subclass of: consent code secondary category
subclass of: Restriction
  on property: is restricted to
  some values from: Topic
definition: This secondary category consent code indicates that use is limited to studies of a certain research type.
id: DUO:0000012

research use only
type: Class
subclass of: consent code secondary category
definition: This secondary category consent code indicates that use is limited to research purposes (e.g., does not include its use in clinical care).
id: DUO:0000014

no general methods research
type: Class
subclass of: consent code secondary category
definition: This secondary category consent code indicates that use includes methods development research(e.g., development of software or algorithms) only within the bounds of other use limitations.
id: DUO:0000015

genetic studies only
type: Class
subclass of: consent code secondary category
definition: This secondary category consent code indicates that use is limited to genetic studies only (i.e., no phenotype-only research)
id: DUO:0000016

data use requirements
type: Class
subclass of: IAO_0000027
definition: Requirements indicate additional conditions set for use.
id: DUO:0000017

not-for-profit use only
type: Class
subclass of: data use requirements
definition: This requirement indicates that use is limited to not-for-profit organizations.
id: DUO:0000018

publication required
type: Class
subclass of: data use requirements
definition: This requirement indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
id: DUO:0000019

collaboration required
type: Class
subclass of: data use requirements
definition: This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s).
id: DUO:0000020

ethics approval required
type: Class
subclass of: data use requirements
definition: This requirement indicates that the requestor must provide documentation of local IRB/ERB approval.
id: DUO:0000021

geographical restriction
type: Class
subclass of: data use requirements
subclass of: Restriction
  on property: is restricted to
  some values from: geographic location
definition: This requirement indicates that use is limited to within a specific geographic region.
id: DUO:0000022

publication moratorium
type: Class
subclass of: data use requirements
definition: This requirement indicates that requestor agrees not to publish results of studies until a specific date
IAO_0000118: publication embargo
id: DUO:0000024

time limit on use
type: Class
subclass of: data use requirements
definition: This requirement indicates that use is approved for a specific number of months.
id: DUO:0000025

user-specific restriction
type: Class
subclass of: data use requirements
definition: This requirement indicates that use is limited to use by approved users.
id: DUO:0000026

project-specific restriction
type: Class
subclass of: data use requirements
definition: This requirement indicates that use is limited to use within an approved project.
id: DUO:0000027

institution-specific restriction
type: Class
subclass of: data use requirements
definition: This requirement indicates that use is limited to use within an approved institution.
id: DUO:0000028

return to database/resource
type: Class
subclass of: data use requirements
definition: This requirement indicates that the requestor must return derived/enriched data to the database/resource.
id: DUO:0000029
shorthand: RTN

geographic location
type: Class
subclass of: BFO_0000029
id: GAZ:00000448

Topic
type: Class
subclass of: IAO_0000030
definition: A category denoting a rather broad domain or field of interest, study, application, work, data, or technology. Topics have no clearly defined borders between each other.
id: topic:0003