DUO_preferred_label
A is restricted to B iff A is a consent code and B is an investigation and A may only participate in instances of a class C, of which B is an instance.
E.g. A dataset is restricted to an instance of an investigation for a specific disease or at geographical location.
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. [url:http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf ]
A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used.
A categorical data item indicating the primary category the consent code belongs to according to Dyke et al. 2016.
A categorical data item indicating the secondary category the consent code belongs to according to Dyke et al. 2016.
This consent code primary category indicates there is no restriction on use.
20180907, Meeting Moran Melanie: This is to be thought about more carefully - what is the intent when using 'no restriction' as usually users still need to be researchers.
Note: the NRES alternative term may be confusing as in the UK it also stands for National Research Ethics Service
This primary category consent code indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry.
This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
health or medical or biomedical research
This primary category consent code indicates that use is allowed provided it is related to the specified disease.
This term should be coupled with a term describing a disease from an ontology, such as the Disease Ontology, HPO, MonDO to specify the disease the restriction applies to.
This primary category consent code indicates that use of the data is limited to the study of population origins or ancestry.
This secondary category consent code indicates that use is limited to studies of a certain research type.
This secondary category consent code indicates that use is limited to research purposes (e.g., does not include its use in clinical care).
This secondary category consent code indicates that use includes methods development research(e.g., development of software or algorithms) only within the bounds of other use limitations.
This secondary category consent code indicates that use is limited to genetic studies only (i.e., no phenotype-only research)
Requirements indicate additional conditions set for use.
This requirement indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
non-commercial use
NPU
This requirement indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
PUB
This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s).
COL
This could be coupled with a string describing the primary study investigator(s).
This requirement indicates that the requestor must provide documentation of local IRB/ERB approval.
IRB
This requirement indicates that use is limited to within a specific geographic region.
GS-[XX]
This should be coupled with an ontology term describing the geographical location the restriction applies to.
This requirement indicates that requestor agrees not to publish results of studies until a specific date
MOR-[XX]
This should be coupled with a date specified as ISO8601
This requirement indicates that use is approved for a specific number of months.
TS-[XX]
This should be coupled with an integer value indicating the number of months.
This requirement indicates that use is limited to use by approved users.
This requirement indicates that use is limited to use within an approved project.
This requirement indicates that use is limited to use within an approved institution.
This requirement indicates that the requestor must return derived/enriched data to the database/resource.
return to database or resource
An investigation concerning development of methods, algorithms, software or analytical tools.
This definition is a placeholder as a result of meetings at ICBO2018.
An investigation concerning a specific population group.
Should be paired with the an ontology term representing this population (e.g., xxx).
An investigation concerning ancestry or population origins.
An investigation concerning specific age categories.
An investigation concerning specific gender categories.
An investigation concerning use of data as reference or control material.
An investigation concerning health, medical, or biomedical research.
Biomedical research concerning genetics (i.e., the study of genes, genetic variations and heredity).
Biomedical research concerning drug development.
Biomedical research research concerning specific disease/s
This primary category consent code indicates that use is allowed for general research use for any research purpose.
This includes but is not limited to: health/medical/biomedical purposes, fundamental biology research, the study of population origins or ancestry, statistical methods and algorithms development, and social-sciences research.
A category denoting a rather broad domain or field of interest, study, application, work, data, or technology. Topics have no clearly defined borders between each other.