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The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." } } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000019", "lbl" : "quality", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000020", "lbl" : "specifically dependent continuant", "type" : "CLASS", "meta" : { "definition" : { "val" : "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. 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(axiom label in BFO2 Reference: [074-001])" } } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000034", "lbl" : "function", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000035", "lbl" : "process boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])" } } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000038", "lbl" : "one-dimensional temporal region", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000040", "lbl" : "material entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." } } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "lbl" : "part of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a core relation that holds between a part and its whole" }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "is part of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my brain is part of my body (continuant parthood, two material entities)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this day is part of this year (occurrent parthood)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything is part of itself. 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See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "part_of" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0040042", "val" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000051", "lbl" : "has part", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a core relation that holds between a whole and its part" }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "has part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my body has part my brain (continuant parthood, two material entities)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this year has part this day (occurrent parthood)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_part" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000054", "lbl" : "realized in", "type" : "PROPERTY", "meta" : { "comments" : [ "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "realized in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this disease is realized in this disease course" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this fragility is realized in this shattering" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this investigator role is realized in this investigation" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is realized by" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "realized_in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000055", "lbl" : "realizes", "type" : "PROPERTY", "meta" : { "comments" : [ "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "realizes" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this disease course realizes this disease" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this investigation realizes this investigator role" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this shattering realizes this fragility" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/iao.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000062", "lbl" : "preceded by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "preceded by" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is preceded by" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "preceded_by" }, { "pred" : "http://purl.org/dc/elements/1.1/source", "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000063", "lbl" : "precedes", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "precedes" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000066", "lbl" : "occurs in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" }, "comments" : [ "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" ], "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "occurs in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "occurs_in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "unfolds in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "unfolds_in" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000067", "lbl" : "contains process", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" }, "comments" : [ "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "site of" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000140", "lbl" : "continuant fiat boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])" } } }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000141", "lbl" : "immaterial entity", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000142", "lbl" : "one-dimensional continuant fiat boundary", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000146", "lbl" : "two-dimensional continuant fiat boundary", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_10545", "lbl" : "electron", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_131621", "lbl" : "C19-steroid", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_131927", "lbl" : "dicarboxylic acids and O-substituted derivatives", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_133331", "lbl" : "metal oxide", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_13389", "lbl" : "NAD", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_13392", "lbl" : "NAD(P)H", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_134024", "lbl" : "chlorofluorocarbon", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_134179", "lbl" : "volatile organic compound", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_134438", "lbl" : "titanium oxides", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_13643", "lbl" : "glycol", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_136861", "lbl" : "pyrrolopurine", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_137980", "lbl" : "metalloid atom", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_138675", "lbl" : "gas molecular entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa)." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "gas molecular entities" }, { "pred" : "hasRelatedSynonym", "val" : "gaseous molecular entities" }, { "pred" : "hasRelatedSynonym", "val" : "gaseous molecular entity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_139120", "lbl" : "carotenoid beta-end derivative", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_139291", "lbl" : "chlorophyll(1-)", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_139292", "lbl" : "chlorophyllide(2-)", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_140503", "lbl" : "kaolin", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_143004", "lbl" : "ultra-long-chain fatty acid", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_143005", "lbl" : "ultra-long-chain fatty acid anion", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_143901", "lbl" : "manganese dihydroxide", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_143907", "lbl" : "manganese hydroxide", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15022", "lbl" : "electron donor", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15339", "lbl" : "acceptor", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15368", "lbl" : "acrolein", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15377", "lbl" : "water", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15378", "lbl" : "hydron", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15379", "lbl" : "dioxygen", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dioxygen" }, { "pred" : "hasRelatedSynonym", "val" : "Disauerstoff" }, { "pred" : "hasRelatedSynonym", "val" : "E 948" }, { "pred" : "hasRelatedSynonym", "val" : "E-948" }, { "pred" : "hasRelatedSynonym", "val" : "E948" }, { "pred" : "hasRelatedSynonym", "val" : "O2" }, { "pred" : "hasRelatedSynonym", "val" : "OXYGEN MOLECULE" }, { "pred" : "hasRelatedSynonym", "val" : "Oxygen" }, { "pred" : "hasRelatedSynonym", "val" : "[OO]" }, { "pred" : "hasRelatedSynonym", "val" : "dioxygene" }, { "pred" : "hasRelatedSynonym", "val" : "molecular oxygen" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15422", "lbl" : "ATP", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_155827", "lbl" : "argon-39 atom", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_155903", "lbl" : "copper(II) phthalocyanine", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_155908", "lbl" : "copper tetrapyrrole", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15611", "lbl" : "sarcosine", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15734", "lbl" : "primary alcohol", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_15996", "lbl" : "GTP", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16042", "lbl" : "halide anion", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16134", "lbl" : "ammonia", "type" : "CLASS", "meta" : { "definition" : { "val" : "An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "AMMONIA" }, { "pred" : "hasExactSynonym", "val" : "Ammonia" }, { "pred" : "hasExactSynonym", "val" : "ammonia" }, { "pred" : "hasExactSynonym", "val" : "azane" }, { "pred" : "hasRelatedSynonym", "val" : "Ammoniak" }, { "pred" : "hasRelatedSynonym", "val" : "NH3" }, { "pred" : "hasRelatedSynonym", "val" : "R-717" }, { "pred" : "hasRelatedSynonym", "val" : "[NH3]" }, { "pred" : "hasRelatedSynonym", "val" : "ammoniac" }, { "pred" : "hasRelatedSynonym", "val" : "amoniaco" }, { "pred" : "hasRelatedSynonym", "val" : "spirit of hartshorn" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16136", "lbl" : "hydrogen sulfide", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16183", "lbl" : "methane", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16189", "lbl" : "sulfate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sulfur oxoanion obtained by deprotonation of both OH groups of sulfuric acid." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Sulfate" }, { "pred" : "hasExactSynonym", "val" : "sulfate" }, { "pred" : "hasExactSynonym", "val" : "tetraoxidosulfate(2-)" }, { "pred" : "hasExactSynonym", "val" : "tetraoxosulfate(2-)" }, { "pred" : "hasExactSynonym", "val" : "tetraoxosulfate(VI)" }, { "pred" : "hasRelatedSynonym", "val" : "SO4(2-)" }, { "pred" : "hasRelatedSynonym", "val" : "SULFATE ION" }, { "pred" : "hasRelatedSynonym", "val" : "Sulfate anion(2-)" }, { "pred" : "hasRelatedSynonym", "val" : "Sulfate dianion" }, { "pred" : "hasRelatedSynonym", "val" : "Sulfate(2-)" }, { "pred" : "hasRelatedSynonym", "val" : "Sulfuric acid ion(2-)" }, { "pred" : "hasRelatedSynonym", "val" : "[SO4](2-)" }, { "pred" : "hasRelatedSynonym", "val" : "sulphate" }, { "pred" : "hasRelatedSynonym", "val" : "sulphate ion" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16199", "lbl" : "urea", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16234", "lbl" : "hydroxide", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16236", "lbl" : "ethanol", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16240", "lbl" : "hydrogen peroxide", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16261", "lbl" : "chitosan", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16301", "lbl" : "nitrite", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16336", "lbl" : "hyaluronic acid", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16454", "lbl" : "pantothenate", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16474", "lbl" : "NADPH", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16482", "lbl" : "naphthalene", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16526", "lbl" : "carbon dioxide", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_16646", "lbl" : "carbohydrate", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any member of the class of organooxygen compounds that is a polyhydroxy-aldehyde or -ketone or a lactol resulting from their intramolecular condensation (monosaccharides); substances derived from these by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom; and polymeric products arising by intermolecular acetal formation between two or more such molecules (disaccharides, polysaccharides and oligosaccharides). Carbohydrates contain only carbon, hydrogen and oxygen atoms; prior to any oxidation or reduction, most have the empirical formula Cm(H2O)n. Compounds obtained from carbohydrates by substitution, etc., are known as carbohydrate derivatives and may contain other elements. 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Many names for small rivers are specific to geographic location; examples are \"run\" in some parts of the United States, \"burn\" in Scotland and northeast England, and \"beck\" in northern England. 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"hasRelatedSynonym", "val" : "creek", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "creek", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasRelatedSynonym", "val" : "creek", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "rivulet", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:stream" }, { "val" : "FTT:105" }, { "val" : "FTT:1221" }, { "val" : "FTT:1225" }, { "val" : "FTT:1261" }, { "val" : "FTT:303" }, { "val" : "FTT:371" }, { "val" : "FTT:593" }, { "val" : "FTT:721" }, { "val" : "Geonames:H.STM" }, { "val" : "Geonames:H.STMS" }, { "val" : "LTER:562" }, { "val" : "SWEETRealm:Stream" }, { "val" : "TGN:21106" }, { "val" : "TGN:21107" }, { "val" : "TGN:21108" }, { "val" : "TGN:21109" }, { "val" : "https://en.wikipedia.org/wiki/Stream" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000024", "lbl" : "obsolete intermittent stream", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stream whose flow is not continuous.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "stream", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "intermittent stream", "xrefs" : [ "Geonames:feature" ] } ], "xrefs" : [ { "val" : "FTT:105" }, { "val" : "FTT:882" }, { "val" : "Geonames:H.STMI" }, { "val" : "https://en.wikipedia.org/wiki/Intermittent_stream" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000025", "lbl" : "reservoir", "type" : "CLASS", "meta" : { "definition" : { "val" : "An artificial body of water, often contained by a dam, constructed for the purpose of water storage.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "lake", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "covered reservoir", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:reservoir" }, { "val" : "FTT:587" }, { "val" : "FTT:588" }, { "val" : "FTT:882" }, { "val" : "Geonames:H.RSV" }, { "val" : "SWEETRealm:Reservoir" }, { "val" : "TGN:51259" }, { "val" : "https://en.wikipedia.org/wiki/Reservoir" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000026", "lbl" : "well", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cylindrical hole, pit, or tunnel drilled or dug down to a depth from which water, oil, or gas can be pumped or brought to the surface.", "xrefs" : [ "Geonames:feature" ] }, "xrefs" : [ { "val" : "EcoLexicon:well" }, { "val" : "FTT:1032" }, { "val" : "FTT:1237" }, { "val" : "FTT:833" }, { "val" : "Geonames:H.WLL" }, { "val" : "Geonames:H.WLLS" }, { "val" : "SWEETRealm:Well" }, { "val" : "TGN:51255" }, { "val" : "https://en.wikipedia.org/wiki/Well" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000027", "lbl" : "spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface landform which provides an egress for groundwater or steam to flow out of the ground.", "xrefs" : [ "https://en.wikipedia.org/wiki/Spring_%28hydrosphere%29#Classification" ] }, "comments" : [ "Springs are typically where an aquifer surface meets the ground surface or where there is a fissure." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "seep", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:spring" }, { "val" : "FTT:982" }, { "val" : "Geonames:H.SPNG" }, { "val" : "SWEETRealm:Spring" }, { "val" : "TGN:21126" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000028", "lbl" : "sand pit quarry", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quarry from which sand is 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"FTT:50" }, { "val" : "FTT:51" }, { "val" : "FTT:52" }, { "val" : "FTT:57" }, { "val" : "FTT:60" }, { "val" : "FTT:62" }, { "val" : "FTT:63" }, { "val" : "FTT:64" }, { "val" : "FTT:72" }, { "val" : "FTT:74" }, { "val" : "Geonames:L.AGRC" }, { "val" : "Geonames:L.RESA" }, { "val" : "Geonames:S.NSY" }, { "val" : "TGN:55001" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000078", "lbl" : "farm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of land which is used for the cultivation of crops or grazing of livestock, including any agricultural constructions therein.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "agricultural site", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "FARM", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "farm", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "farms", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "farmstead", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "ranch", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "ranch", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasRelatedSynonym", "val" : "ranch", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:45" }, { "val" : "FTT:58" }, { "val" : "FTT:59" }, { "val" : "FTT:69" }, { "val" : "Geonames:S.FRM" }, { "val" : "Geonames:S.FRMS" }, { "val" : "Geonames:S.RNCH" }, { "val" : "TGN:54011" }, { "val" : "https://en.wikipedia.org/wiki/Farm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000079", "lbl" : "flume", "type" : "CLASS", "meta" : { "definition" : { "val" : "An open artificial water channel, that leads water from a diversion dam or weir completely aside a natural flow, often an elevated box structure (typically wood) that follows the natural contours of the land.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flume" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "watercourse", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "flume (manmade)", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "canal", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:flume" }, { "val" : "FTT:129" }, { "val" : "FTT:404" }, { "val" : "https://en.wikipedia.org/wiki/Flume" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000080", "lbl" : "mountain range", "type" : "CLASS", "meta" : { "definition" : { "val" : "A range of mounts which is dominated by mountains." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cordillera", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "mountain chain" }, { "pred" : "hasRelatedSynonym", "val" : "mountain group" }, { "pred" : "hasRelatedSynonym", "val" : "sierra", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:mountain_range" }, { "val" : "FTT:548" }, { "val" : "FTT:995" }, { "val" : "FTT:997" }, { "val" : "Geonames:MTS" }, { "val" : "SWEETRealm:MountainRange" }, { "val" : "TGN:21431" }, { "val" : "TGN:21432" }, { "val" : "https://en.wikipedia.org/wiki/Mountain_range" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000081", "lbl" : "mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A landform that extends above the surrounding terrain in a limited area.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mountain#United_Kingdom", "https://www.unep-wcmc.org/resources-and-data/mountain-watch--environmental-change-sustainable-development-in-mountains", "https://www.usgs.gov/faqs/what-difference-between-mountain-hill-and-peak-lake-and-pond-or-river-and-creek" ] }, "comments" : [ "A mountain is generally steeper than a hill, but there is no universally accepted standard definition for the height of a mountain or a hill although a mountain usually has an identifiable summit. The USGS had previously defined mountains as localised elevations of more than 300 meters; however, the organisation has accepted there are no technical definitions in the US. In ENVO, we primarily use the UNEP-WCMC classification to be compliant with SDG monitoring, but we can host other classifications on request: http://www.fao.org/sustainable-development-goals/indicators/1542/en/" ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Mountain", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasRelatedSynonym", "val" : "mountains", "xrefs" : [ "Geonames:feature" ] } ], "xrefs" : [ { "val" : "EcoLexicon:mountain" }, { "val" : "FTT:1000" }, { "val" : "FTT:118" }, { "val" : "FTT:460" }, { "val" : "FTT:548" }, { "val" : "FTT:713" }, { "val" : "FTT:896" }, { "val" : "FTT:993" }, { "val" : "Geonames:T.MT" }, { "val" : "Geonames:T.MTS" }, { "val" : "SWEETRealm:Mountain" }, { "val" : "TGN:21430" }, { "val" : "TGN:21434" }, { "val" : "https://en.wikipedia.org/wiki/Mountain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000082", "lbl" : "hill range", "type" : "CLASS", "meta" : { "definition" : { "val" : "A range of mounts which is dominated by hills.", "xrefs" : [ "MA:ma" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000083", "lbl" : "hill", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rounded elevation of limited extent rising above the surrounding land with local relief of less than 300m.", "xrefs" : [ "Geonames:feature" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cerro" }, { "pred" : "hasRelatedSynonym", "val" : "foothill", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "foothill", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "hill", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "hillock", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "hills", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "knoll", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "mount", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "mountain", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:hill" }, { "val" : "FTT:118" }, { "val" : "FTT:468" }, { "val" : "FTT:713" }, { "val" : "FTT:799" }, { "val" : "FTT:896" }, { "val" : "Geonames:T.HLL" }, { "val" : "Geonames:T.HLLS" }, { "val" : "SWEETRealm:Hill" }, { "val" : "TGN:21437" }, { "val" : "TGN:21438" }, { "val" : "https://en.wikipedia.org/wiki/Hill" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000084", "lbl" : "mountain pass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lower point that allows easier access through a mountain range. 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"saddle", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasRelatedSynonym", "val" : "saddle", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "saddle (physiographic)", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "sill (physiographic)", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:mountain_pass" }, { "val" : "FTT:510" }, { "val" : "FTT:612" }, { "val" : "FTT:738" }, { "val" : "FTT:739" }, { "val" : "FTT:740" }, { "val" : "Geonames:T.GAP" }, { "val" : "Geonames:T.PASS" }, { "val" : "Geonames:T.SDL" }, { "val" : "SWEETRealm:Pass" }, { "val" : "TGN:21433" }, { "val" : "TGN:21436" }, { "val" : "TGN:21524" }, { "val" : "https://en.wikipedia.org/wiki/Mountain_pass" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000085", "lbl" : "alpine glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier contained in the site of a mountain valley.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alpine_glacier", 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"outwash plain", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:plain" }, { "val" : "FTT:707" }, { "val" : "FTT:874" }, { "val" : "FTT:926" }, { "val" : "Geonames:T.PLN" }, { "val" : "SWEETRealm:Plain" }, { "val" : "TGN:21461" }, { "val" : "https://en.wikipedia.org/wiki/Plain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000087", "lbl" : "cliff", "type" : "CLASS", "meta" : { "definition" : { "val" : "A slope which is part of a rocky elevation and which has a high degree of steepness.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "beach scarp", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "bluff", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "bluff", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "ceja", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "ice cliff", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "palisade", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "precipice", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "scar", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "scarp", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "scaw", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "scraps", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:cliff" }, { "val" : "FTT:268" }, { "val" : "FTT:269" }, { "val" : "FTT:491" }, { "val" : "FTT:492" }, { "val" : "Geonames:T.CLF" }, { "val" : "SWEETRealm:Cliff" }, { "val" : "TGN:21487" }, { "val" : "TGN:21488" }, { "val" : "https://en.wikipedia.org/wiki/Cliff" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000088", "lbl" : "sea cliff", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cliff that is a margin of a sea or ocean.", "xrefs" : [ "MA:ma" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { 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We chose to obsolete this now." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "http://purl.obolibrary.org/obo/ENVO_00000133" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "http://purl.obolibrary.org/obo/ENVO_01000277" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "http://purl.obolibrary.org/obo/ENVO_01000406" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000132", "lbl" : "ice sheet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier which covers an area of greater than 50,000 square kilometers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_sheet" ] }, "comments" : [ "This is not always classified as a glacier in the cryosphere community." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "FTT:758" }, { "val" : "FTT:835" }, { "val" : "FTT:837" }, { "val" : "SWEETRealm:IceSheet" }, { "val" : "TGN:21147" }, { "val" : "https://en.wikipedia.org/wiki/Ice_sheet" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000133", "lbl" : "glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which is of sufficient mass that the action of gravity upon it overcomes the frictional forces holding it in place, causing it to deform and flow towards lower elevation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Glacier" ] }, "comments" : [ "The definition of glacier is highly variable. Two main issues exist: 1) Whether or not a mass of ice must currently show movement to be considered a glacier or not and 2) What is the relationship between ice sheets and glaciers (i.e., which is the parent in a parent/child relationship or whether they are distinct terms)." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "glacial feature", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "RockGlacier", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasRelatedSynonym", "val" : "rock glacier", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:glacier" }, { "val" : "FTT:648" }, { "val" : "FTT:756" }, { "val" : "Geonames:H.GLCR" }, { "val" : "TGN:21141" }, { "val" : "http://sweetontology.net/realmCryo/Glacier" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : 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separates different physiogeographic provinces that are typically composed of rocks of different age and compositoin.", "xrefs" : [ "https://en.wikipedia.org/wiki/Escarpment" ] }, "comments" : [ "An escarpment usually represents the line of erosional loss of the newer rock over the older." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "scarp" }, { "pred" : "hasRelatedSynonym", "val" : "cliff", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "cuesta", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "cuesta", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "cuesta", "xrefs" : [ "Getty:TGN" ] } ], "xrefs" : [ { "val" : "EcoLexicon:scarp" }, { "val" : "FTT:490" }, { "val" : "FTT:596" }, { "val" : "Geonames:T.CUET" }, { "val" : "Geonames:T.SCRP" }, { "val" : "TGN:21489" }, { "val" : "TGN:21500" }, { "val" : "https://en.wikipedia.org/wiki/Escarpment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000281", "lbl" : "fault escarpment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An escarpment resulting from a fault.", "xrefs" : [ "https://en.wikipedia.org/wiki/Escarpment" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Fault_escarpment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000282", "lbl" : "esker", "type" : "CLASS", "meta" : { "definition" : { "val" : "A long, winding ridge of stratified sand and gravel which occur in glaciated and formerly glaciated regions of Europe and North America.", "xrefs" : [ "https://en.wikipedia.org/wiki/Esker" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ridge", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "ridge", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:673" }, { "val" : "https://en.wikipedia.org/wiki/Esker" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000283", "lbl" : "ridge", "type" : "CLASS", "meta" : { "definition" : { "val" : "A long and narrow elevation with steep sides.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "RIDGE", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "Ridge", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasNarrowSynonym", "val" : "beach cusp", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "beach ridge", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "beach ridge", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "icecap ridge", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "rise (seafloor)", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "arete", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "arete", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "crest", "xrefs" : [ 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"lbl" : "quarry", "type" : "CLASS", "meta" : { "definition" : { "val" : "An open-pit mine from which rock or minerals are extracted.", "xrefs" : [ "https://en.wikipedia.org/wiki/Quarry" ] }, "xrefs" : [ { "val" : "EcoLexicon:quarry" }, { "val" : "FTT:14" }, { "val" : "FTT:974" }, { "val" : "Geonames:S.MNQR" }, { "val" : "TGN:54217" }, { "val" : "https://en.wikipedia.org/wiki/Quarry" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000285", "lbl" : "quicksand bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bed which is composed of quicksand forming a soft, shifting mass that yields easily to pressure.", "xrefs" : [ "USGS:SDTS", "https://en.wikipedia.org/wiki/Quicksand" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000286", "lbl" : "polder", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area reclaimed from the sea by diking and draining.", "xrefs" : [ "Geonames:feature" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "physiographic feature", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:polder" }, { "val" : "FTT:1070" }, { "val" : "FTT:96" }, { "val" : "Geonames:T.PLDR" }, { "val" : "TGN:21522" }, { "val" : "https://en.wikipedia.org/wiki/Polder" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000287", "lbl" : "butte", "type" : "CLASS", "meta" : { "definition" : { "val" : "An isolated hill with steep sides and a small flat top, smaller than mesas and plateaus. Buttes are formed by erosion when a cap of hard rock, usually of volcanic origin, covers a layer of softer rock that is easily worn away. This hard rock avoids erosion while the rock around it wears down.", "xrefs" : [ "ADL:FTT" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "plateau", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:376" }, { "val" : "Geonames:T.BUTE" }, { "val" : "SWEETRealm:Butte" }, { "val" : "TGN:21443" }, { "val" : "https://en.wikipedia.org/wiki/Butte" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000288", "lbl" : "cotton plantation", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "agricultural site", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "FTT:45" }, { "val" : "FTT:53" }, { "val" : "Geonames:ESTC" }, { "val" : "https://en.wikipedia.org/wiki/Cotton_plantation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000289", "lbl" : "horst", "type" : "CLASS", "meta" : { "definition" : { "val" : "The raised fault block bounded by normal faults. The raised block is a portion of the Earth's crust that has remained stationary while the land has sunk on either side of it or has been crushed by a mountain range against it.", "xrefs" : [ "https://en.wikipedia.org/wiki/Horst_%28geology%29" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000290", "lbl" : "graben", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depressed block of land bordered by parallel faults. A graben is the result of a block of land being downthrown producing a valley with a distinct scarp on each side. Grabens often occur side-by-side with horsts. 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The material in the outwash plain is often size-sorted by the water runoff of the melting glacier with the finest materials, like silt, being the most distantly re-deposited, whereas larger boulders are the closest to the original terminus of the glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sandur" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "outwash plain" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Sandur" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000313", "lbl" : "blowout", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sandy depression in a sand dune ecosystem (psammosere) caused by the removal of sediments by wind.", "xrefs" : [ "https://en.wikipedia.org/wiki/Blowout_%28geology%29" ] }, "xrefs" : [ { "val" : "EcoLexicon:blowout" }, { "val" : "FTT:267" }, { "val" : "Geonames:T.BLOW" }, { "val" : "TGN:21448" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000314", "lbl" : "alluvial fan", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fan-shaped deposit formed where a fast flowing stream flattens, slows, and spreads typically at the exit of a canyon onto a flatter plain.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alluvial_fan" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fan (alluvial)", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "fan", "xrefs" : [ "Geonames:feature" ] } ], "xrefs" : [ { "val" : "EcoLexicon:alluvial_fan" }, { "val" : "FTT:94" }, { "val" : "FTT:95" }, { "val" : "Geonames:T.FAN" }, { "val" : "SWEETRealm:AlluvialFan" }, { "val" : "TGN:21421" }, { "val" : "https://en.wikipedia.org/wiki/Alluvial_fan" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000315", "lbl" : "bajada", "type" : "CLASS", "meta" : { "definition" : { "val" : "A convergence of neighboring alluvial fans into a single apron of deposits against a slope.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alluvial_fan" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "desert", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "FTT:188" }, { "val" : "FTT:191" }, { "val" : "SWEETRealm:Bajada" }, { "val" : "https://en.wikipedia.org/wiki/Bajada" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000316", "lbl" : "intertidal zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The area of the foreshore and seabed that is exposed to the air at low tide and submerged at high tide, i.e., the area between tide marks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Intertidal_zone" ] }, "comments" : [ "Very similar to the \"marine eulittoral zone\" class, but without reference to seasonal tide marks. 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Water fills depressions in the ground, which turn into isolated pools as the tide retreats.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tide_pool" ] }, "xrefs" : [ { "val" : "EcoLexicon:tidal_pool" }, { "val" : "https://en.wikipedia.org/wiki/Tidal_pool" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000318", "lbl" : "high tide zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The tide zone that is flooded during high tide only, and is a highly saline environment.", "xrefs" : [ "https://en.wikipedia.org/wiki/Intertidal_zone" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "upper littoral" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000319", "lbl" : "low tide zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The tidal zone that is mostly submerged, only being exposed at the point of low tide and for a longer period of time during extremely low tides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Intertidal_zone" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lower littoral" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000320", "lbl" : "crevasse", "type" : "CLASS", "meta" : { "definition" : { "val" : "A deep fissure in snow or ice.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CREVASSE", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "cleft", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "cleft", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasRelatedSynonym", "val" : "fissure", "xrefs" : [ "Getty:TGN" ] } ], "xrefs" : [ { "val" : "FTT:489" }, { "val" : "FTT:594" }, { "val" : "FTT:702" }, { "val" : "Geonames:T.FSR" }, { "val" : "TGN:21415" }, { "val" : "TGN:21416" }, { "val" : "https://en.wikipedia.org/wiki/Crevasse" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000321", "lbl" : "joint-plane cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cavity developed along a joint and elongate in cross-section.", "xrefs" : [ "wiki:http://wasg.iinet.net.au/terminol.html" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000322", "lbl" : "volcanic cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave formed in volcanic rock.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "comments" : [ "\"Lave cave\" is differentiated from \"volcanic cave\": the former is formed in volcanic rock, the latter is formed by volcanic processes." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lava cave" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Lava_cave" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000323", "lbl" : "live cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave containing a stream or active speleothems.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000324", "lbl" : "outflow cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave from which a stream flows or formerly did so and which cannot be followed upstream to the surface.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000325", "lbl" : "polje", "type" : "CLASS", "meta" : { "definition" : { "val" : "A large closed depression draining underground, with a flat floor across which there may be an intermittent or perennial stream and which may be liable to flood and become a lake. The floor makes a sharp break with parts of surrounding slopes.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "xrefs" : [ { "val" : "EcoLexicon:polje" }, { "val" : "https://en.wikipedia.org/wiki/Polje" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000326", "lbl" : "sea cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave in present-day or emerged sea cliffs, formed by wave attack or solution.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Sea_cave" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000327", "lbl" : "speleothem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A secondary mineral deposit formed in caves, most commonly calcite.", "xrefs" : [ "https://en.wikipedia.org/wiki/Speleothem" ] }, "xrefs" : [ { "val" : "EcoLexicon:speleothem" }, { "val" : "https://en.wikipedia.org/wiki/Speleothem" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000328", "lbl" : "vadose zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An interface layer which 1) is primarily composed of solid materials, 2) separates the land surface and phreatic zone, and 3) contains groundwater at atmospheric pressure.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html", "https://en.wikipedia.org/wiki/Vadose_zone" ] }, "comments" : [ "If the vadose zone includes portions of soil, the water contained therein is termed soil moisture. In fine grained soils, capillary action can cause the pores of the soil to be fully saturated above the water table at a pressure less than atmospheric. In such soils, therefore, the unsaturated zone is the upper section of the vadose zone and not identical to it." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "unsaturated zone", "xrefs" : [ "https://en.wikipedia.org/wiki/Vadose_zone" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000329", "lbl" : "phreatic zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A compound astronomical body part which is located beneath the land surface and in which all interstices are filled with water that has a hydraulic head greater than atmospheric pressure due to the weight of overlying groundwater.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html", "https://en.wikipedia.org/wiki/Phreatic_zone" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "zone of saturation", "xrefs" : [ "https://en.wikipedia.org/wiki/Phreatic_zone" ] } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Phreatic_zone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000330", "lbl" : "stalagmite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A speleothem projecting vertically upwards from a cave floor and formed by precipitation from drips.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Stalagmite" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000331", "lbl" : "stalactite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A speleothem hanging downwards from a roof or wall, of cylindrical or conical form, usually with a central hollow tube.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Stalactite" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000332", "lbl" : "doline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A closed depression draining underground in karst, of simple but variable form, e.g. cylindrical, conical, bowl- or dish-shaped. From a few to many hundreds of metres in dimensions.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Doline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000333", "lbl" : "subjacent karst", "type" : "CLASS", "meta" : { "definition" : { "val" : "Karst developed in soluble beds underlying other rock formations; the surface may or may not be affected by the karst development.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000334", "lbl" : "syngenetic karst", "type" : "CLASS", "meta" : { "definition" : { "val" : "Karst developed in eolian calcarenite when the development of karst features has taken place at the same time as the lithification of dune sand.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000335", "lbl" : "polygonal karst", "type" : "CLASS", "meta" : { "definition" : { "val" : "Karst completely pitted by closed depressions so that divides between them form a crudely polygonal network.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000336", "lbl" : "doline karst", "type" : "CLASS", "meta" : { "definition" : { "val" : "Karst dominated by closed depressions, chiefly dolines, perforating a simple surface.", "xrefs" : [ "http://wasg.iinet.net.au/terminol.html" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000337", "lbl" : "obsolete orange juice", "type" : "CLASS", "meta" : { "comments" : [ "Added for compatibility with GEMINA." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Orange_juice" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FOODON:00001001" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000338", "lbl" : "vomit material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of vomit, a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose.", "xrefs" : [ "ENVOC:nm", "GEMINA:ls", "https://en.wikipedia.org/wiki/Vomit" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000339", "lbl" : "piece of rock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of solid material which is composed primarily of rock." }, "xrefs" : [ { "val" : "FTT:1010" }, { "val" : "FTT:145" }, { "val" : "Geonames:T.RK" }, { "val" : "Geonames:T.RKS" }, { "val" : "TGN:21444" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000340", "lbl" : "particle of sand", "type" : "CLASS", "meta" : { "definition" : { "val" : "A particle which 1) is composed primarily of and derived from rock or mineral sources and 2) is or was part of a portion of sand.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sand" ] }, "comments" : [ "In general, sand grains are larger than those of silt, but finer than those of gravel." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "grain of sand" }, { "pred" : "hasExactSynonym", "val" : "granule of sand" }, { "pred" : "hasExactSynonym", "val" : "sand granule" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000341", "lbl" : "piece of gravel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of rock which is between two and 64 millimetres in length along its largest dimension.", "xrefs" : [ "https://en.wikipedia.org/wiki/Gravel" ] }, "comments" : [ "Arguably, this could be placed in the \"particle\" hierarchy, but is usually considered too large in everyday semantics." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000342", "lbl" : "ice cap dome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A comparatively elevated area on an icecap.", "xrefs" : [ "Geonames:feature" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ice mass", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "icecap dome", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasNarrowSynonym", "val" : "icecap dome", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "FTT:758" }, { "val" : "FTT:840" }, { "val" : "Geonames:H.DOMG" }, { "val" : "TGN:21144" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000343", "lbl" : "particle of silt", "type" : "CLASS", "meta" : { "definition" : { "val" : "A particle which 1) is primarily composed of quartz or feldspar and 2) is or was part of a portion of silt." }, "comments" : [ "The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "grain of silt" }, { "pred" : "hasExactSynonym", "val" : "granule of silt" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000344", "lbl" : "grain of desert sand", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000345", "lbl" : "grain of beach sand", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000346", "lbl" : "grain of acid dune sand", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000347", "lbl" : "grain of sea sand", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000348", "lbl" : "grain of rocky sand", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000349", "lbl" : "terrarium", "type" : "CLASS", "meta" : { "definition" : { "val" : "A terrarium is a vivarium which simulates a terrestrial environment.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vivarium" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Terrarium" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000350", "lbl" : "somma volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcanic caldera that has been partially filled by a new central cone.", "xrefs" : [ "wiki:http\\://en.wikipedia.org/wiki/Somma" ] }, "comments" : [ "This may be more a subclass of 'caldera'" ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Somma_volcano" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000351", "lbl" : "volcanic arc", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chain of volcanic islands or mountains formed by plate tectonics as an oceanic tectonic plate subducts under another tectonic plate and produces magma.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_arc" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Volcanic_arc" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000352", "lbl" : "continental arc", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcanic arc formed by the subduction of oceanic crust below continental crust.", "xrefs" : [ "wiki:http\\://en.wikipedia.org/wiki/Volcanic_arc" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000353", "lbl" : "island arc", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcanic arc formed by the subduction of oceanic crust other oceanic crust on an adjacent tectonic plate.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_arc" ] }, "xrefs" : [ { "val" : "EcoLexicon:island_arc" }, { "val" : "SWEETRealm:IslandArc" }, { "val" : "https://en.wikipedia.org/wiki/Island_arc" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000354", "lbl" : "volcanic field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geothermal field which is prone to localized volcanic activity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_field" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "volcanic complex" }, { "pred" : "hasRelatedSynonym", "val" : "volcanic group" }, { "pred" : "hasRelatedSynonym", "val" : "volcanic system" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Volcanic_field" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000355", "lbl" : "monogenetic volcanic field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcanic field of small, scattered volcanic vents. These volcanic fields, containing numerous monogenetic volcanoes, are noted for having only one short eruptive event. Monogenetic fields occur only where the magma supply to the volcano is low or where vents are not close enough or large enough to develop plumbing systems for continuous feeding of magma.", "xrefs" : [ "https://en.wikipedia.org/wiki/Monogenetic_volcanic_field" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Monogenetic_volcanic_field" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000356", "lbl" : "pyroclastic cone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cone made of material ejected from a volcano. The material can range from finest particles. In comparison, cinder cones are more uniform. They are usually found in or on larger features, such as stratovolcanoes, shield volcanoes and can be found inside calderas, however they can also be an independent feature. 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The distinguishing feature of a lock is a fixed chamber whose water level can be varied.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lock_%28water_transport%29" ] }, "xrefs" : [ { "val" : "EcoLexicon:lock" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000358", "lbl" : "area of protected biodiversity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of land or of a body of water in which management practices, through legal or other effective means, prioritise the protection and maintenance of biological diversity, and of natural and associated cultural resources.", "xrefs" : [ "https://en.wikipedia.org/wiki/Protected_area" ] }, "comments" : [ "This class needs revision. Protected areas may be designated for multiple uses, and more clarity is needed. Further, the protections applied to the entities within the site may not prioritise biodiversity conservation. At a very general level, \"protection\" suggests that some forms of use are, in principle, excluded." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "protected area" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000359", "lbl" : "natural monument", "type" : "CLASS", "meta" : { "definition" : { "val" : "A natural environment which has been designated by a competent authority as having outstanding or unique value because of its rarity, aesthetic qualities, or cultural significance.", "xrefs" : [ "https://en.wikipedia.org/wiki/Natural_Monument" ] }, "comments" : [ "The commemorative value may be associated with one or more components of the environment in question, such as a mountain, tree, or river." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "monument" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000360", "lbl" : "area of national forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A protected forest or woodland area in the United States. National forests are controlled by the federal government and managed by the United States Forest Service, under the direction of the United States Department of Agriculture.", "xrefs" : [ "https://en.wikipedia.org/wiki/National_Forest" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "national forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000361", "lbl" : "site of special scientific interest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A conservation designation denoting a protected area in the United Kingdom. SSSIs are the basic 'building block' of nature conservation legislation and most other legal nature/geological conservation designations are based upon them, including National Nature Reserves, Ramsar Sites, Special Protection Areas, and Special Areas of Conservation.", "xrefs" : [ "https://en.wikipedia.org/wiki/SSSI" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Area of Special Scientific Interest" }, { "pred" : "hasRelatedSynonym", "val" : "SSSI" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000362", "lbl" : "marine park area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A protected area of the sea usually established to preserve a specific habitat and ensure the ecosystem is sustained for the organisms that exist there. Most marine parks are designated by governments, and organized like watery national parks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Marine_park" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "marine park" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000363", "lbl" : "area designated as a nature reserve", "type" : "CLASS", "meta" : { "definition" : { "val" : "A protected area of importance for wildlife, flora, fauna or features of geological or other special interest, which is reserved and managed for conservation and to provide special opportunities for study or research. Nature reserves may be designated by government institutions in some countries, such as the United Kingdom, or by private landowners, such as charities and research institutions, regardless of nationality.", "xrefs" : [ "https://en.wikipedia.org/wiki/Nature_reserve" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "natural preserve" }, { "pred" : "hasRelatedSynonym", "val" : "natural reserve" }, { "pred" : "hasRelatedSynonym", "val" : "nature preserve" }, { "pred" : "hasRelatedSynonym", "val" : "nature reserve" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000364", "lbl" : "national wildlife refuge", "type" : "CLASS", "meta" : { "definition" : { "val" : "A designation for certain protected areas of the United States managed by the United States Fish and Wildlife Service. The National Wildlife Refuge system is a network of lands and waters managed to protect wildlife and wildlife habitat.", "xrefs" : [ "https://en.wikipedia.org/wiki/National_Wildlife_Refuge" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000365", "lbl" : "Ramsar site", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wetland protected by the terms of the Ramsar Convention (The Convention on Wetlands of International Importance, especially as Waterfowl Habitat).", "xrefs" : [ "https://en.wikipedia.org/wiki/Ramsar_Convention" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000366", "lbl" : "area designated as a national nature reserve", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of protected biodiversity which is of national significance for biological or Earth science interest.", "xrefs" : [ "https://en.wikipedia.org/wiki/National_Nature_Reserve" ] }, "comments" : [ "Used as a designation in the United Kingdom." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "national nature reserve" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000367", "lbl" : "IUCN national park", "type" : "CLASS", "meta" : { "definition" : { "val" : "An IUCN protected area which 1) primarily consists of ecosystems which are able to maintain their natural composition, structure, and function at a regional scale and which are deemed to be representative of a region's natural bio- and geodiversity, 2) is sufficiently large to allow its constituent ecosystems to function, develop, and recover from natural perturbations without human intervention, and 3) is managed to preserve natural ecosystem integrity and functioning at a regional scale, while allowing human access for the purposes of conservation, cultural and spiritural activities, research, education, tourism, subsistence use by indigenous communities, and recreation.", "xrefs" : [ "https://en.wikipedia.org/wiki/National_park", "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-ii-national-park" ] }, "comments" : [ "Note that this ENVO class is not authoritative: see the associated IUCN references for a complete definition of all Protected Areas. These areas often serve as migration corridors between other natural and semi-natural ecosystems and pools of biodiversity. They may have core zones that are similar to IUCN Protected Area classes Ia and Ib." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "national park", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-ii-national-park" ] } ], "xrefs" : [ { "val" : "IUCN-PACS:II" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000368", "lbl" : "ephemeral island", "type" : "CLASS", "meta" : { "definition" : { "val" : "An island, usually the consequence of the activity of a submarine volcano, that only exists for a short period or short periods of time after its formation, then being eroded or otherwise disappearing beneath the surface of a body of water.", "xrefs" : [ "MA:ma" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000369", "lbl" : "brine pool", "type" : "CLASS", "meta" : { "definition" : { "val" : "MERGED DEFINITION:\nTARGET DEFINITION: A large area of brine on the ocean basin near cold seep vents which release methane into the water. These pools are concentrations of water having an extremely high salinity as compared to the surrounding ocean, caused by the motion of large salt deposits through salt tectonics.\n--------------------\nSOURCE DEFINITION: Marine brine pools are large areas of brine on the ocean basin. These pools are bodies of water that have a salinity three to five times greater than the surrounding ocean. For deep-sea brine pools the source of the salt is the dissolution of large salt deposits through salt tectonics. The brine often contains high concentrations of methane, providing energy to chemosynthetic animals that live near the pool.", "xrefs" : [ "https://en.wikipedia.org/wiki/Brine_pool" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "marine brine pool" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Brine_pool" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "ENVO:01000060" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000370", "lbl" : "tuya", "type" : "CLASS", "meta" : { "definition" : { "val" : "A distinctive, flat-topped, steep-sided volcano formed when lava erupts through a thick glacier or ice sheet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tuya" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Tuya" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000371", "lbl" : "complex volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcano with more than one feature. They form because changes of their eruptive characteristics or the location of multiple vents in an area. Stratovolcanoes may form complex volcanoes, because they may overlap another from explosive eruptions, lava flows, pyroclastic flows and by repeated eruptions, to make multiple summits and vents. Stratovolcanoes could also form a large caldera that gets filled in by multiple small cinder cones, lava domes and craters may also develop on the caldera's rim.", "xrefs" : [ "https://en.wikipedia.org/wiki/Complex_volcano" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "compound volcano" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Complex_volcano" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000372", "lbl" : "pyroclastic shield volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shield volcano that is formed mostly of pyroclastic and highly explosive eruptions rather than relatively fluid basaltic lava issuing from vents or fissures on the surface of the volcano. They typically display low-angle flank slopes and have little or no central collapse, although a shallow sag in the shield is commonly observed. Lava is commonly extruded after the cessation of explosive activity commonly superposes the vent region.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pyroclastic_shield" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ignimbrite shield volcano" }, { "pred" : "hasExactSynonym", "val" : "terrestrial ignimbrite shield" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000373", "lbl" : "obsolete geothermal field", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area where wells can be drilled to obtain elements contained in solution in hot brines or to tap heat energy.", "xrefs" : [ "wiki:http://www.webref.org/geology/g/geothermal_field.htm" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:01001851" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000374", "lbl" : "wildlife management area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A protected area with the purpose of protecting and managing wild life.", "xrefs" : [ "MA:ma", "https://en.wikipedia.org/wiki/Wildlife_management_area" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000375", "lbl" : "world heritage site", "type" : "CLASS", "meta" : { "definition" : { "val" : "A protected area that is a specific site (such as a forest, mountain, lake, desert, monument, building, complex, or city) that has been nominated and confirmed for inclusion on the list maintained by the international World Heritage Programme administered by the UNESCO World Heritage Committee.", "xrefs" : [ "https://en.wikipedia.org/wiki/World_heritage_site" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000376", "lbl" : "biosphere reserve", "type" : "CLASS", "meta" : { "definition" : { "val" : "An international conservation designation given by UNESCO under its Programme on Man and the Biosphere (MAB).", "xrefs" : [ "https://en.wikipedia.org/wiki/Biosphere_reserve" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Biosphere_reserve" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000377", "lbl" : "artificial lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake purposefully constructed.", "xrefs" : [ "MA:ma" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Artificial_lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000378", "lbl" : "canal head reservoir", "type" : "CLASS", "meta" : { "definition" : { "val" : "A reservoir constructed for the purpose of maintaining water levels in a canal or canals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Reservoir" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000379", "lbl" : "inundation disposition", "type" : "CLASS", "meta" : { "definition" : { "val" : "The disposition of an environmental system to be covered by liquid water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "flooding disposition" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8238-6757" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-29T15:44:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000380", "lbl" : "ice shelf", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which 1) is attached to the coast 2) at least 2 meters in thickness 3) forms where a glacier or ice mass flows down to a coastline and onto the ocean surface and 4) grows by annual snow accumulation or by the seaward extension of land glaciers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_shelf", "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "An ice shelf may grow hundreds of miles out to sea. Usually of great horizontal extent and with a level or gently undulating surface. Nourished by annual snow accumulation and also by the seaward extension of land glaciers. Limited areas may be aground. Ice shelves are much thicker than sea ice often filling embayments in the coastline of an ice sheet.. Currently, nearly all ice shelves are in Antarctica, where most of the ice discharged into the ocean flows via ice shelves. The mass balance of an ice shelf may have significant components of both gain and loss at the base. The seaward edge is termed an ice front. The calving of an ice shelf forms tabular icebergs and ice islands." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "SWEETRealm:IceShelf" }, { "val" : "http://sweetontology.net/realmCryo/IceShelf" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000381", "lbl" : "massif", "type" : "CLASS", "meta" : { "definition" : { "val" : "A section of the Earths's crust that is demarcated by faults or flexures. In the movement of the crust, a massif tends to retain its internal structure while being displaced as a whole.", "xrefs" : [ "https://en.wikipedia.org/wiki/Massif" ] }, "xrefs" : [ { "val" : "EcoLexicon:massif" }, { "val" : "FTT:946" }, { "val" : "TGN:21435" }, { "val" : "https://en.wikipedia.org/wiki/Massif" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000382", "lbl" : "lake shore", "type" : "CLASS", "meta" : { "definition" : { "val" : "That part of the land in immediate contact with a lake.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lakeshore", "xrefs" : [ "Getty:TGN" ] } ], "xrefs" : [ { "val" : "TGN:21484" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000383", "lbl" : "stream bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "The channel bottom of a stream; the physical confine of the normal water flow.", "xrefs" : [ "https://en.wikipedia.org/wiki/Stream_bed" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "stream bottom" }, { "pred" : "hasNarrowSynonym", "val" : "dry stream bed", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "stream channel", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasRelatedSynonym", "val" : "stream channel", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:651" }, { "val" : "Geonames:H.STMB" }, { "val" : "TGN:21165" }, { "val" : "https://en.wikipedia.org/wiki/Stream_bed" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000384", "lbl" : "river bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "The channel bottom of a river; the physical confine of the normal water flow.", "xrefs" : [ "https://en.wikipedia.org/wiki/Stream_bed" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "watercourse", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "river bottom" } ], "xrefs" : [ { "val" : "EcoLexicon:river_bed_structure" }, { "val" : "SWEETRealm:RiverBed" }, { "val" : "TGN:21154" }, { "val" : "https://en.wikipedia.org/wiki/River_bed" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000385", "lbl" : "stream mouth", "type" : "CLASS", "meta" : { "definition" : { "val" : "The place where a stream discharges into a lagoon, lake, or the sea.", "xrefs" : [ "Geonames:feature" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "stream", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "FTT:105" }, { "val" : "FTT:1222" }, { "val" : "Geonames:H.STMM" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000386", "lbl" : "river mouth", "type" : "CLASS", "meta" : { "definition" : { "val" : "The end of a stream where it enters a standing water body such as a lake, sea or ocean.", "xrefs" : [ "MA:ma" ] }, "xrefs" : [ { "val" : "TGN:21156" }, { "val" : "https://en.wikipedia.org/wiki/River_mouth" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000387", "lbl" : "container of an intermittent lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depression which intermittently contains a lake.", "xrefs" : [ "MA:ma" ] }, "comments" : [ "This has been moved from the lake hierarchy." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "lake", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "intermittent lake", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasExactSynonym", "val" : "intermittent lakes", "xrefs" : [ "Geonames:feature" ] } ], "xrefs" : [ { "val" : "FTT:221" }, { "val" : "FTT:875" }, { "val" : "Geonames:H.LKI" }, { "val" : "Geonames:H.LKSI" }, { "val" : "TGN:21118" }, { "val" : "https://en.wikipedia.org/wiki/Intermittent_lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000388", "lbl" : "obsolete intermittent watercourse", "type" : "CLASS", "meta" : { "definition" : { "val" : "A watercourse whose flow is not continuous.", "xrefs" : [ "MA:ma" ] }, "xrefs" : [ { "val" : "TGN:21111" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000389", "lbl" : "intermittent wetland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wetland ecosystem which is sometimes inundated or saturated by surface or ground water sufficient to support, and that under normal circumstances do support, a prevalence of vegetation typically adapted for life in saturated soil conditions.", "xrefs" : [ "MA:ma" ] }, "xrefs" : [ { "val" : "FTT:85" }, { "val" : "FTT:883" }, { "val" : "Geonames:H.WTLDI" }, { "val" : "TGN:21306" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "In a strict sense, this class cannot always satisfy the subclass axiom of wetland, requiring soil to always have a wet quality. Perhaps this should be treated more like channel of an intermittent stream." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000390", "lbl" : "mountain spur", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spur which is part of a mountain." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000391", "lbl" : "land bridge", "type" : "CLASS", "meta" : { "definition" : { "val" : "An isthmus or other land connection between what at other times are separate land masses which allows animals and plants to cross and colonise new lands. Land bridges are commonly created by regression, in which sea levels fall exposing previously submerged sections of continental shelf. Land bridges are also formed by: (a) upthrust at the edge of continental plates; and (b) glacial retreat alleviating pressure on shallow marine formations.", "xrefs" : [ "https://en.wikipedia.org/wiki/Land_bridge" ] }, "xrefs" : [ { "val" : "TGN:21478" }, { "val" : "https://en.wikipedia.org/wiki/Land_bridge" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000392", "lbl" : "ice tongue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A long and narrow sheet of ice projecting out from the coastline. An ice tongue forms when a valley glacier moves very rapidly out into the ocean or a lake.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_tongue" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glacier tongue" }, { "pred" : "hasRelatedSynonym", "val" : "glacial tongue", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "TGN:21143" }, { "val" : "https://en.wikipedia.org/wiki/Ice_tongue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000393", "lbl" : "sound", "type" : "CLASS", "meta" : { "definition" : { "val" : "A large sea or ocean inlet larger than a bay, deeper than a bight, wider than a fjord, or it may identify a narrow sea or ocean channel between two bodies of land.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sound_%28geography%29" ] }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "EcoLexicon:sound" }, { "val" : "FTT:233" }, { "val" : "FTT:469" }, { "val" : "Geonames:H.SD" }, { "val" : "SWEETRealm:Sound" }, { "val" : "TGN:21129" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000394", "lbl" : "strait", "type" : "CLASS", "meta" : { "definition" : { "val" : "A narrow channel of water that connects two larger bodies of water, and thus lies between two land masses.", "xrefs" : [ "https://en.wikipedia.org/wiki/Strait" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "channel", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasBroadSynonym", "val" : "watercourse", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:strait" }, { "val" : "FTT:233" }, { "val" : "FTT:470" }, { "val" : "Geonames:H.STRT" }, { "val" : "SWEETRealm:Strait" }, { "val" : "TGN:21132" }, { "val" : "https://en.wikipedia.org/wiki/Strait" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000395", "lbl" : "channel of a watercourse", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depressed landform which physically confines a river, slough or ocean strait, and which consists of a bed and banks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Channel_%28geography%29" ] }, "xrefs" : [ { "val" : "EcoLexicon:channel" }, { "val" : "EcoLexicon:sea_channel" }, { "val" : "FTT:1192" }, { "val" : "FTT:233" }, { "val" : "FTT:461" }, { "val" : "FTT:462" }, { "val" : "FTT:463" }, { "val" : "FTT:464" }, { "val" : "FTT:465" }, { "val" : "FTT:466" }, { "val" : "FTT:468" }, { "val" : "FTT:469" }, { "val" : "FTT:470" }, { "val" : "Geonames:H.CHN" }, { "val" : "Geonames:U.SCNU" }, { "val" : "Geonames:U.SCSU" }, { "val" : "SWEETRealm:Channel" }, { "val" : "TGN:21137" }, { "val" : "TGN:23451" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We need a more general channel definition, the current is only for water course channels. We need to refactor the semantics of channels, tunnels and conduits, in a similar way to uberon anatomical channels http://purl.obolibrary.org/obo/UBERON_0004111. See https://github.com/EnvironmentOntology/envo/issues/147" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000396", "lbl" : "marine channel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A channel of a watercourse which contains marine water." }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "FTT:233" }, { "val" : "FTT:465" }, { "val" : "Geonames:H.CHNM" }, { "val" : "TGN:21186" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000397", "lbl" : "lake channel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A channel of a watercourse which contains lake water." }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "FTT:233" }, { "val" : "FTT:464" }, { "val" : "Geonames:H.CHNL" }, { "val" : "TGN:21185" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000398", "lbl" : "volcanic cone", "type" : "CLASS", "meta" : { "definition" : { "val" : "Built by fragments (called ejecta) thrown up (ejected) from a volcanic vent, piling up around the vent in the shape of a cone with a central crater.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_cone" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cone", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasBroadSynonym", "val" : "cone", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasExactSynonym", "val" : "lava cone", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "cone (geological)", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "FTT:530" }, { "val" : "Geonames:T.CONE" }, { "val" : "SWEETRealm:VolcanicCone" }, { "val" : "TGN:21418" }, { "val" : "https://en.wikipedia.org/wiki/Volcanic_cone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000399", "lbl" : "ash cone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cone that is composed of particles of silt to sand size. Explosive eruptions from a vent where the magma is interacting with groundwater or the sea (as in an eruption off the coast) produce steam and are called phreatic. The interaction between the magma, expanding steam, and volcanic gases results in the ejection of mostly small particles called ash. Fallen ash has the consistency of flour. The unconsolidated ash forms an ash cone which becomes a tuff cone or tuff ring once the ash consolidates.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_cone" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Ash_cone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000400", "lbl" : "cinder cone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cone built almost entirely of loose volcanic fragments called cinders (pumice, pyroclastics, or tephra). They are built from particles and blobs of congealed lava ejected from a single vent. As the gas-charged lava is blown violently into the air, it breaks into small fragments that solidify and fall as cinders around the vent to form a circular or oval cone. Most cinder cones have a bowl-shaped crater at the summit.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_cone" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "mount", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "SWEETRealm:CinderCone" }, { "val" : "https://en.wikipedia.org/wiki/Cinder_cone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000401", "lbl" : "spatter cone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcanic cone formed of molten lava ejected from a vent somewhat like taffy. Expanding gases in the lava fountains tear the liquid rock into irregular gobs that fall back to earth, forming a heap around the vent. The still partly liquid rock splashed down and over the sides of the developing mound is called spatter. Because spatter is not fully solid when it lands, the individual deposits are very irregular in shape and weld together as they cool, and in this way particularly differ from cinder and ash.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_cone" ] }, "xrefs" : [ { "val" : "SWEETRealm:SpatterCone" }, { "val" : "https://en.wikipedia.org/wiki/Spatter_cone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000402", "lbl" : "mud volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcano created by geologically excreted liquids and gases, although there are several different processes which may cause such activity. Temperatures are much cooler than igneous processes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mud_volcano" ] }, "xrefs" : [ { "val" : "EcoLexicon:mud_volcano" }, { "val" : "https://en.wikipedia.org/wiki/Mud_volcano" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000403", "lbl" : "shield volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A large volcano with shallowly-sloping sides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Shield_volcano" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "mount", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Shield_volcano" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000404", "lbl" : "stratovolcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tall, conical volcano composed of many layers of hardened lava, tephra, and volcanic ash. These volcanoes are characterized by a steep profile and periodic, explosive eruptions. The lava that flows from them is viscous, and cools and hardens before spreading very far. The source magma of this rock is classified as acidic, or high in silica to intermediate (rhyolite, dacite, or andesite).", "xrefs" : [ "https://en.wikipedia.org/wiki/Stratovolcano" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "composite volcano" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Stratovolcano" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000405", "lbl" : "obsolete submarine volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "An underwater fissures in the earth's surface from which magma can erupt.", "xrefs" : [ "https://en.wikipedia.org/wiki/Submarine_volcano" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:00000264" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000406", "lbl" : "mid-ocean ridge", "type" : "CLASS", "meta" : { "definition" : { "val" : "An underwater mountain range, formed by plate tectonics. This uplifting of the ocean floor occurs when convection currents rise in the mantle beneath the oceanic crust and create magma where two tectonic plates meet at a divergent boundary. The mid-ocean ridges of the world are connected and form a single global mid-oceanic ridge system that is part of every ocean.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mid-ocean_ridge" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "OceanRidge", "xrefs" : [ "NASA:earthrealm" ] } ], "xrefs" : [ { "val" : "EcoLexicon:oceanic_ridge" }, { "val" : "TGN:23151" }, { "val" : "https://en.wikipedia.org/wiki/Mid-ocean_ridge" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000407", "lbl" : "subglacial volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcano produced by subglacial eruptions or eruptions beneath the surface of a lake melted into a glacier or ice mass by the rising lava.", "xrefs" : [ "https://en.wikipedia.org/wiki/Subglacial_volcano" ] }, "comments" : [ "Something more specific than an adjacent_to relation would be better, especially considering the volcano in question may have melted nearby glacial mass." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "tuya" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Subglacial_volcano" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1336-5554" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000408", "lbl" : "volcanic fissure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A linear volcanic vent through which lava erupts, usually without any explosive activity. The vent is usually a few meters wide and may be many kilometers long. Fissure vents can cause large flood basalts and hannels. The volcano can usually be seen as a crack in the ground or on the ocean floor. Narrow fissures can be filled in with lava that hardens.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fissure_vent" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "fissure" }, { "pred" : "hasRelatedSynonym", "val" : "fissure vent" } ], "xrefs" : [ { "val" : "FTT:702" }, { "val" : "SWEETRealm:Fissure" }, { "val" : "https://en.wikipedia.org/wiki/Volcanic_fissure" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000409", "lbl" : "whirlpool", "type" : "CLASS", "meta" : { "definition" : { "val" : "A large, swirling body of water produced by ocean tides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Whirlpool" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "hydrographic feature", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "WHRL", "xrefs" : [ "Geonames:feature" ] } ], "xrefs" : [ { "val" : "FTT:131" }, { "val" : "FTT:829" }, { "val" : "TGN:21183" }, { "val" : "https://en.wikipedia.org/wiki/Whirlpool" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000410", "lbl" : "kipuka", "type" : "CLASS", "meta" : { "definition" : { "val" : "An elevated area such as a hill, ridge or old lava dome inside or downslope from an area of active volcanism. New lava flows will cover the surrounding land, isolating the kipuka so that it appears as a (usually) forested island in a barren lava flow.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava#K.C4.ABpukas" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Kipuka" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000411", "lbl" : "ford", "type" : "CLASS", "meta" : { "definition" : { "val" : "The shallow part of a stream which can be easily crossed.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "transportation feature", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "ford (crossing)", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:ford" }, { "val" : "FTT:714" }, { "val" : "FTT:83" }, { "val" : "Geonames:T.FORD" }, { "val" : "TGN:21170" }, { "val" : "https://en.wikipedia.org/wiki/Ford" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000412", "lbl" : "tidal watercourse", "type" : "CLASS", "meta" : { "definition" : { "val" : "A watercourse which has the intensity and direction of its flow primarily determined by the tides." }, "xrefs" : [ { "val" : "TGN:21130" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000413", "lbl" : "pingo", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mound of earth-covered ice found in the Arctic, subarctic, and Antarctica that can reach up to 70 metres in height and up to 2 kilometres in diameter.", "xrefs" : [ "DOI:10.1016/0033-5894(76)90039-9", "https://en.wikipedia.org/wiki/Pingo" ] }, "comments" : [ "Pingos may occur in cold-climate wetland areas, but are not necessarily wetlands themselves." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "mount", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "hydrolaccolith", "xrefs" : [ "https://en.wikipedia.org/wiki/Pingo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/OMO_0003004", "pred" : "hasExactSynonym", "val" : "pingos" }, { "pred" : "hasRelatedSynonym", "val" : "bugor" }, { "pred" : "hasRelatedSynonym", "val" : "bulginniakh" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Pingo" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000414", "lbl" : "natural arch", "type" : "CLASS", "meta" : { "definition" : { "val" : "A natural formation where a rock arch forms, with a natural passageway through underneath.", "xrefs" : [ "https://en.wikipedia.org/wiki/Natural_arch" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "arches (natural formation)", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "natural bridge", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "sea arch", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "FTT:142" }, { "val" : "FTT:143" }, { "val" : "FTT:144" }, { "val" : "TGN:21445" }, { "val" : "https://en.wikipedia.org/wiki/Natural_arch" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000415", "lbl" : "raised beach", "type" : "CLASS", "meta" : { "definition" : { "val" : "A beach or wave cut platform raised above the shore line by a relative fall in the sea level.", "xrefs" : [ "https://en.wikipedia.org/wiki/Raised_beach" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "terrace", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:raised_beach" }, { "val" : "https://en.wikipedia.org/wiki/Raised_beach" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000416", "lbl" : "coastal dune", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dune which is part of a coast.", "xrefs" : [ "https://en.wikipedia.org/wiki/Coastal_dune" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000417", "lbl" : "machair", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fertile low-lying raised beach found on the some of the coastlines of Ireland and Scotland, in particular in the Outer Hebrides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Machair_%28geography%29" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000418", "lbl" : "ria", "type" : "CLASS", "meta" : { "definition" : { "val" : "A submergent coastal landform that forms where sea levels rise relative to the land either as a result of eustatic sea level change; where the global sea levels rise or isostatic sea level change; where the land sinks. When this happens valleys which were previously at sea level become submerged.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ria" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "drowned river valley" }, { "pred" : "hasRelatedSynonym", "val" : "drowned valley" }, { "pred" : "hasRelatedSynonym", "val" : "valley", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Ria" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000419", "lbl" : "stack", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geological landform consisting of a steep and often vertical column or columns of rock in the sea near a coast.", "xrefs" : [ "https://en.wikipedia.org/wiki/Stack_%28geology%29" ] }, "xrefs" : [ { "val" : "EcoLexicon:stack" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000420", "lbl" : "tombolo", "type" : "CLASS", "meta" : { "definition" : { "val" : "A deposition landform such as a spit or bar which forms a narrow piece of land between an island or offshore rock and a mainland shore, or between two islands or offshore rocks. They usually form because the island causes wave refraction, depositing sand and shingle moved by longshore drift in each direction around the island where the waves meet. Eustatic sea level rise may also contribute to accretion as material is pushed up with rising sea levels.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tombolo" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "bar", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "island", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:tombolo" }, { "val" : "SWEETRealm:Tombolo" }, { "val" : "https://en.wikipedia.org/wiki/Tombolo" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000421", "lbl" : "wave-cut platform", "type" : "CLASS", "meta" : { "definition" : { "val" : "The narrow flat area often seen at the base of a sea cliff caused by the action of the waves.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wave_cut_platform" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "marine terrace" } ], "xrefs" : [ { "val" : "SWEETRealm:WaveCutPlatform" }, { "val" : "https://en.wikipedia.org/wiki/Wave-cut_platform" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000422", "lbl" : "limestone pavement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A natural karst landform consisting of a flat, incised surface of exposed limestone that resembles artificial pavement.", "xrefs" : [ "https://en.wikipedia.org/wiki/Limestone_pavement" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Limestone_pavement" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000423", "lbl" : "river island", "type" : "CLASS", "meta" : { "definition" : { "val" : "An island that lies in a river.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ait" }, { "pred" : "hasRelatedSynonym", "val" : "eyot" }, { "pred" : "hasRelatedSynonym", "val" : "fluvial island", "xrefs" : [ "Getty:TGN" ] } ], "xrefs" : [ { "val" : "EcoLexicon:fluvial_island" }, { "val" : "TGN:21428" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000424", "lbl" : "lake island", "type" : "CLASS", "meta" : { "definition" : { "val" : "An island that lies in a lake.", "xrefs" : [ "MA:ma" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Lake_island" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000426", "lbl" : "ocean floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine bed which lies below an ocean.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ocean_floor", "MA:ma" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ocean bed" }, { "pred" : "hasRelatedSynonym", "val" : "ocean floor feature", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "seafloor" } ], "xrefs" : [ { "val" : "FTT:1020" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000427", "lbl" : "meander", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bend in a stream. A stream flowing through a wide valley or flat plain will tend to form a meanders as it alternatively erodes and deposits sediments along its course.", "xrefs" : [ "https://en.wikipedia.org/wiki/Meander" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "watercourse", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "stream", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "oxbow loop" } ], "xrefs" : [ { "val" : "EcoLexicon:meander" }, { "val" : "FTT:105" }, { "val" : "FTT:948" }, { "val" : "SWEETRealm:Meandering" }, { "val" : "TGN:21153" }, { "val" : "https://en.wikipedia.org/wiki/Meander" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000428", "lbl" : "biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome is an ecosystem which is undergoing climactic ecological succession.", "xrefs" : [ "DOI:10.1186/2041-1480-4-43", "https://en.wikipedia.org/wiki/Biome" ] }, "comments" : [ "In this definition, there is an assumption that no major perturbations are occurring or have occurred in a time frame affects the successional dynamics of the ecosystem. A \"major\" perturbation is one which disrupts the community's ability to restore its (near) equilibrium. Usually, pioneer or early secondary successional processes would be in effect in such scenarios." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "major habitat type", "xrefs" : [ "WWF:Biome" ] }, { "pred" : "hasRelatedSynonym", "val" : "EcosytemType", "xrefs" : [ "NASA:earthrealm" ] } ], "xrefs" : [ { "val" : "EcoLexicon:biome" }, { "val" : "LTER:809" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000429", "lbl" : "arete", "type" : "CLASS", "meta" : { "definition" : { "val" : "A ridge which is jagged, narrow and separates glacier valleys or cirques.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The ridge frequently resembles the blade of a serrated knife. A French term referring to the bones in a fish backbone. Aretes are typically formed when two glaciers erode parallel U-shaped valleys. Aretes can also form when two glacial cirques erode towards one another, although frequently this results in a saddle-shaped pass, called a col." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ridge", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "ridge", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:154" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000430", "lbl" : "dirt cone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A feature of a glacier, in which dirt, which has fallen into a hollow in the ice, forms a coating which insulates the ice below. The surrounding ice melts away, leaving the dirt cone.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dirt_cone" ] }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Dirt_cone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000431", "lbl" : "drumlin field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cluster of dozens to hundreds of similarly shaped, sized and oriented drumlins.", "xrefs" : [ "https://en.wikipedia.org/wiki/Drumlin_field" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "drumlin swarm" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Drumlin_field" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000432", "lbl" : "monadnock", "type" : "CLASS", "meta" : { "definition" : { "val" : "An isolated hill, knob, ridge, or small mountain that rises abruptly from a gently sloping or virtually level surrounding plain.", "xrefs" : [ "https://en.wikipedia.org/wiki/Inselberg" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "inselberg" }, { "pred" : "hasRelatedSynonym", "val" : "kopje" }, { "pred" : "hasRelatedSynonym", "val" : "mount", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Monadnock" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000433", "lbl" : "kame terrace", "type" : "CLASS", "meta" : { "definition" : { "val" : "A terrace associated with a kame.", "xrefs" : [ "MA:ma" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000434", "lbl" : "outwash fan", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fan-shaped body of sediments deposited by braided streams from a melting glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Outwash_fan" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Outwash_fan" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000435", "lbl" : "proglacial lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake formed either by the damming action of a moraine or ice dam during the retreat of a melting glacier, or one formed by meltwater trapped against an ice mass due to isostatic depression of the crust around the ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Proglacial_lake" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "lake", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Proglacial_lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000436", "lbl" : "tunnel valley", "type" : "CLASS", "meta" : { "definition" : { "val" : "A deep but narrow valley with a 'U' shaped cross-section and frequently a 'U' shaped plan which is usually found filled with glacial till. It is formed when the edge of an ice mass advances up a slope. Its length may be appropriately measured in centimetres or kilometres, depending on the circumstances of formation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tunnel_valley" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rinnental" }, { "pred" : "hasRelatedSynonym", "val" : "tunnel-vale" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Tunnel_valley" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000437", "lbl" : "Nye channel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A small tunnel valley.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tunnel_valley" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000438", "lbl" : "alas", "type" : "CLASS", "meta" : { "definition" : { "val" : "A steep-sided depression formed by the melting of permafrost; it may contain a lake.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alas" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Alas" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000439", "lbl" : "dell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A small wooded valley, either U- or V-shaped.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dell_%28landform%29" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "valley", "xrefs" : [ "USGS:SDTS" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000440", "lbl" : "rock shelter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shallow cave-like opening at the base of a bluff or cliff.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rock_shelter" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rockhouse" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Rock_shelter" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000441", "lbl" : "terracette", "type" : "CLASS", "meta" : { "definition" : { "val" : "A ridge on a hillside formed when saturated soil particles expand, then contract as they dry, causing them to move slowly downhill.", "xrefs" : [ "https://en.wikipedia.org/wiki/Terracette" ] }, "xrefs" : [ { "val" : "SWEETRealm:Terracette" }, { "val" : "https://en.wikipedia.org/wiki/Terracette" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000442", "lbl" : "maelstrom", "type" : "CLASS", "meta" : { "definition" : { "val" : "A very powerful whirlpool.", "xrefs" : [ "https://en.wikipedia.org/wiki/Whirlpool" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Maelstrom" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000443", "lbl" : "flood control reservoir", "type" : "CLASS", "meta" : { "definition" : { "val" : "A reservoir constructed for the purpose of containing a flood, an overflow of water from a body of water that sumerges land.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "flood control basin" }, { "pred" : "hasRelatedSynonym", "val" : "retention basin", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "storage basin", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "EcoLexicon:flood_control_reservoir" }, { "val" : "FTT:1175" }, { "val" : "FTT:217" }, { "val" : "FTT:709" }, { "val" : "TGN:51261" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000444", "lbl" : "woodland clearing", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tract of land which has few or no trees and is surrounded by more heavily wooded areas.", "xrefs" : [ "USGS:SDTS", "https://en.wikipedia.org/wiki/Glade_(geography)" ] }, "comments" : [ "There should be a better superclass than \"field\" which should indicate that there are no woody plants in growth form \"tree\" around." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CLEARING", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "clearing", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasNarrowSynonym", "val" : "forest clearing" }, { "pred" : "hasRelatedSynonym", "val" : "burn", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "burnt over area", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "clearing", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "cut line", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "fire break", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "glade", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "grassland", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "logged area", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "opening" } ], "xrefs" : [ { "val" : "FTT:259" }, { "val" : "FTT:488" }, { "val" : "Geonames:L.CLG" }, { "val" : "LTER:79" }, { "val" : "TGN:21651" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000445", "lbl" : "transvasement", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaduct to transport water from one river basin to another one, to solve problems of hydrographic imbalance. 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Its formation begins when a glacier moves over an area containing alternate bands of hard and soft bedrock. The sharp-edged boulders carried at the bottom of the glacier erode the softer rock more quickly by abrasion, thus creating a hollow called a rock basin. On either side of the rock basin, the more resistant rock is eroded less and these outcrops of harder rock are known as rock bars, which act as dams between which rainwater may accumulate after the retreat of the ice age, filling up the rock basin and creating a ribbon lake. A ribbon lake may also form behind a terminal or recessional moraine, both of which also act as dams, enabling water to accumulate behind them. A ribbon lake may also occur if a tributary glacier joins a main glacier. 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There are currently issues in the community about the definition of this glacier type: It is undecided whether or not a) a tidewater glacier has to have a grounded terminus and b) whether glaciers terminating in a lake can be considered to be tidewater glaciers." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000457", "lbl" : "plateau glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier on a plateau or high area, smaller than an ice sheet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tidewater_glacier#Types_of_glaciers" ] }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000458", "lbl" : "valley glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier which 1) flows for all or most of its length within the walls of a valley, in consequence having a distinct tongue and a well-defined outline and 2) descends from either high mountains, from an ice cap on a plateau, or from an ice sheet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tidewater_glacier#Types_of_glaciers", "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "These glaciers typically flow down pre-existing valleys and have ice-free slopes overlooking the glacier surface." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Valley_glacier" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000459", "lbl" : "outlet glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier fed by an ice sheet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tidewater_glacier#Types_of_glaciers" ] }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Outlet_glacier" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000460", "lbl" : "penplain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A region of low topographic relief as a consequence of erosion by streams.", "xrefs" : [ "https://en.wikipedia.org/wiki/Peneplain" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000461", "lbl" : "pseudocrater", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcanic landform which resembles a true volcanic crater, but differs in that it is not an actual vent from which lava has erupted. 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flooding.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dam#By_purpose" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000472", "lbl" : "backwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of calm water unaffected by the current of a stream.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "wetland", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "BACKWATER", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:184" }, { "val" : "TGN:21302" }, { "val" : "https://en.wikipedia.org/wiki/Backwater" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000473", "lbl" : "gravel pit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quarry from which gravel is extracted.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "mine site", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "FTT:772" }, { "val" : "https://en.wikipedia.org/wiki/Gravel_pit" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000474", "lbl" : "cut", "type" : "CLASS", "meta" : { "definition" : { "val" : "An excavation of the Earth's surface to provide passage for a road, railway, canal, etc.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CUT", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "cutting" } ], "xrefs" : [ { "val" : "FTT:1182" }, { "val" : "https://en.wikipedia.org/wiki/Cut" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000475", "lbl" : "inlet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An opening of the sea into the land, or of a lake into its shore.", "xrefs" : [ "USGS:SDTS", "https://en.wikipedia.org/wiki/Inlet" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "anse", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "arm", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "firth", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "ria", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:inlet" }, { "val" : "FTT:233" }, { "val" : "FTT:463" }, { "val" : "Geonames:H.GULF" }, { "val" : "Geonames:H.INLT" }, { "val" : "SWEETRealm:Inlet" }, { "val" : "TGN:21128" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000476", "lbl" : "lake inlet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An opening of a lake into its shore.", "xrefs" : [ "USGS:SDTS" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000477", "lbl" : "mount", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mountain or a hill.", "xrefs" : [ "USGS:SDTS" ] }, "comments" : [ "This is not placed under surface landform, as seamounts are also mounts and are submerged." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cerrito", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "cerro", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "cerro", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "dome", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "koppje", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "monadnock", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:118" }, { "val" : "FTT:460" }, { "val" : "TGN:21439" }, { "val" : "https://en.wikipedia.org/wiki/Mount" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000478", "lbl" : "range of mounts", "type" : "CLASS", "meta" : { "definition" : { "val" : "A field which includes at least two mounts connected by high ground and arranged in an approximately linear fashion." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "range (physiographic)", "xrefs" : [ "ADL:FTT" ] } ], "xrefs" : [ { "val" : "FTT:996" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000479", "lbl" : "mouth", "type" : "CLASS", "meta" : { "definition" : { "val" : "The exit or point of discharge of a stream into another stream, lake or sea.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MOUTH", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "outlet", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:outlet" }, { "val" : "SWEETRealm:Mouth" }, { "val" : "https://en.wikipedia.org/wiki/Mouth" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000480", "lbl" : "peak", "type" : "CLASS", "meta" : { "definition" : { "val" : "The summit of a mount.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "peaks", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "ahu", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "ice peak", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "mountain crest", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "mountain summit", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "nunatak", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "summit", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "summit", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:summit" }, { "val" : "FTT:757" }, { "val" : "FTT:79" }, { "val" : "FTT:80" }, { "val" : "FTT:994" }, { "val" : "FTT:998" }, { "val" : "FTT:999" }, { "val" : "Geonames:T.PK" }, { "val" : "Geonames:T.PKS" }, { "val" : "SWEETRealm:Peak" }, { "val" : "TGN:21490" }, { "val" : "https://en.wikipedia.org/wiki/Peak" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000481", "lbl" : "pinnacle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tall, slender, spire-shaped rock projecting from a level or more gently sloping surface.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "natural rock formation", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasExactSynonym", "val" : "PINNACLE", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "pinnacle (natural formation)", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "chapeirao", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "coral head", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "crag", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "pillar", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "scar", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:crag" }, { "val" : "FTT:1008" }, { "val" : "FTT:145" }, { "val" : "https://en.wikipedia.org/wiki/Pinnacle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000482", "lbl" : "sea floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine bed which lies below a sea.", "xrefs" : [ "https://en.wikipedia.org/wiki/Seabed", "MA:ma" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Meeresboden" }, { "pred" : "hasExactSynonym", "val" : "SeaFloor", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasExactSynonym", "val" : "fondale marino" }, { "pred" : "hasExactSynonym", "val" : "fondo marino" }, { "pred" : "hasExactSynonym", "val" : "ocean floor" }, { "pred" : "hasExactSynonym", "val" : "seabed" }, { "pred" : "hasExactSynonym", "val" : "seafloor" }, { "pred" : "hasRelatedSynonym", "val" : "ocean floor" }, { "pred" : "hasRelatedSynonym", "val" : "sea bed" }, { "pred" : "hasRelatedSynonym", "val" : "海床" }, { "pred" : "hasRelatedSynonym", "val" : "海底" } ], "xrefs" : [ { "val" : "EcoLexicon:sea_floor" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8395-2570" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000483", "lbl" : "plunge pool", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hollow eroded by the force of the falling water at the base of a waterfall, particularly by the eddying effect.", "xrefs" : [ "USGS:SDTS" ] }, "comments" : [ "Problematic. Does this refer to the depression or the accumulated water?" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PLUNGE POOL", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Plunge_pool" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000484", "lbl" : "polynya", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea surface layer which is 1) not covered by ice and 2) laterally surrounded by either pack ice or land and pack ice.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "A polynya is a Russian term for any non-linear shaped area of open water within the ice pack. Polynyas may contain brash ice and/or be covered with new ice, nilas or young ice; submariners refer to these as skylights.\n\nSometimes the polynya is limited on one side by the coast and is called a shore polynya or by fast ice and is called a flaw polynya. If it recurs in the same position every year, e.g. off the mouths of big rivers, it is called a recurring polynya. A temporary small clearing in pack ice which consists of small floes and brash in continuous local movement is called an unstable polynya; an opening which is flanked by large floes and therefore appears to be relatively stable is called a stable polynya.\n\nPolynyas range in size from relatively small to enormous. The largest polynya observed in the Antarctic was the Weddell Polynya of 1975-77, covering an area of 2x105km2.\n\nThe two main categories of polynya are sensible heat and latent heat, depending on the mechanism responsible for maintaining their presence. Latent heat polynyas are maintained by persistent katabatic winds that drain off the continent. Newly formed ice is advected away by the wind, leaving the surface ice-free and open to more ice formation. In this manner latent heat polynyas can be major sources of new ice production. Coastal polynyas are primarily of this type. Sensible heat polynyas are maintained by upwelling warm water that supplies a sufficiently large oceanic heat flux to the base of the ice to reduce its thickness, or melt it completely. These polynyas are not responsible for large quantities of new ice production. A polynya may also form by a combination of the sensible and latent heat processes.\n\n\nFrom the remote sensing/sea ice standpoint a polynya is a hole in the ice that ordinarily wouldn't be there - except that either the wind is creating it by pushing the ice away or there is something under the ice that is warmer than its surroundings and melting the ice that would otherwise be there.", "Could be a subclass of a class that describes holes in solid material covering water or other liquids. Perhaps a class like \"clearing\". Logical def can include surrounded_by \"ice mass\"." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "POLYNA", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "Polyn'ya" }, { "pred" : "hasExactSynonym", "val" : "Polynya", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasExactSynonym", "val" : "polynia", "xrefs" : [ "https://en.wikipedia.org/wiki/polynia" ] }, { "pred" : "hasRelatedSynonym", "val" : "big clearing", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "clearing", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "glade", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "ice clearing", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "regional clearing", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:polynya" }, { "val" : "SWEETRealm:Polynya" }, { "val" : "https://en.wikipedia.org/wiki/Polynya" } ], 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These streams have generally developed after the original stream. Subsequent streams developed independently of the original relief of the land and generally follow paths determined by the weak rock belts.", "xrefs" : [ "https://en.wikipedia.org/wiki/Obsequent_stream" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Subsequent_stream" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000492", "lbl" : "resequent stream", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stream whose course follows the original relief, but at a lower level than the original slope (e.g., flows down a course determined by the underlying strata in the same direction). 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For details on \"Large rivers\" (e.g. the Mekong river) see http://worldwildlife.org/biomes/large-river-ecosystems This class will be replaced with a less ambiguous class." ], "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000888", "lbl" : "large river headwater biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater river biome which is determined by the headwaters of a large river." }, "comments" : [ "\"Large\" is ambiguous. For details on \"Large river headwaters\" (e.g. the Upper Amazon headwaters) see http://worldwildlife.org/biomes/large-river-headwater-ecosystems This class will be replaced with a less ambiguous class." ], "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000889", "lbl" : "large river delta biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater river biome which is determined by the delta of a large river." }, "comments" : [ "\"Large\" is ambiguous. For details on \"Large river deltas\" (e.g. the Niger river delta) see http://worldwildlife.org/biomes/large-river-delta-ecosystems This class will be replaced with a less ambiguous class." ], "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000890", "lbl" : "small river biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater river biome which is determined by a small river." }, "comments" : [ "\"Small\" is ambiguous. For details on \"Small rivers\" (e.g. the Salween river) see http://worldwildlife.org/biomes/small-river-ecosystems. This class will be replaced with a less ambiguous class." ], "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000891", "lbl" : "large freshwater lake biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater biome which is determined by a large lake." }, "comments" : [ "\"Large\" is ambiguous. For details on \"Large lakes\" (e.g. African rift lakes) see http://worldwildlife.org/biomes/large-lake-ecosystems This class will be replaced with a less ambiguous class." ], "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000892", "lbl" : "small freshwater lake biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater lake biome which is determined by a small lake." }, "comments" : [ "\"Small\" is ambiguous. For details on \"Small lakes\" (e.g. Cameroon crater lakes) see http://worldwildlife.org/biomes/small-lake-ecosystems. This class will be replaced with a less ambiguous class." ], "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000893", "lbl" : "xeric basin biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which has little permanent surface water and a low relative abundance of springs.", "xrefs" : [ "https://www.worldwildlife.org/biomes/xeric-basin-ecosystems" ] }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The WWF definition is somewhat ambiguous, but workable." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000894", "lbl" : "obsolete polar biome", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:01000186" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000895", "lbl" : "obsolete temperate shelf and sea biome", "type" : "CLASS", "meta" : { "comments" : [ "Please refer to the terms in the neritic pelagic zone and neritic benthic zone branches (PLB: 2010-03-15)" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000896", "lbl" : "obsolete temperate upwelling biome", "type" : "CLASS", "meta" : { "comments" : [ "Please use the appropriate terms in the marine biome branch in combination with the marine upwelling feature to specify an environment characterised by a marine upwelling (2010-03-15, PLB)" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000897", "lbl" : "obsolete tropical upwelling biome", "type" : "CLASS", "meta" : { "comments" : [ "Please use the appropriate terms in the marine biome branch in combination with the marine upwelling feature to specify an environment characterised by a marine upwelling (2010-03-15, PLB)" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00000898", "lbl" : "obsolete tropical coral biome", "type" : "CLASS", "meta" : { "comments" : [ "Please use terms in the marine coral reef branch of the Biome hierarchy (2010-03-15, PLB) to describe marine coral reefs." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:01000049" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00001995", "lbl" : "rock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.", "xrefs" : [ "MA:ma", "https://en.wikipedia.org/wiki/Rock_(geology)" ] }, "comments" : [ "From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure." ], "xrefs" : [ { "val" : "EcoLexicon:rock" }, { "val" : "FTT:1010" }, { "val" : "FTT:145" }, { "val" : "Geonames:T.RK" }, { "val" : "Geonames:T.RKS" }, { "val" : "SWEETRealm:Rock" }, { "val" : "TGN:21444" }, { "val" : "https://en.wikipedia.org/wiki/Rock" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00001996", "lbl" : "mine drainage", "type" : "CLASS", "meta" : { "definition" : { "val" : "The outflow of water from a mine.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "acid and metalliferous drainage", "xrefs" : [ "https://en.wikipedia.org/wiki/Acid_mine_drainage" ] }, { "pred" : "hasRelatedSynonym", "val" : "acid rock drainage", "xrefs" : [ "https://en.wikipedia.org/wiki/Acid_mine_drainage" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00001997", "lbl" : "acid mine drainage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mine drainage with an acidic pH.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "acid rock drainage", "xrefs" : [ "https://en.wikipedia.org/wiki/Acid_mine_drainage" ] } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Acid_mine_drainage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00001998", "lbl" : "soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, interstitial gases, liquids, and a broad range of resident micro- and macroorganisms.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soil" ] }, "comments" : [ "'In engineering terms, soil is referred to as regolith, or loose rock material that lies above the 'solid geology'. Soil is commonly referred to as \"earth\" or \"dirt\"; technically, the term \"dirt\" should be restricted to displaced soil.' https://en.wikipedia.org/wiki/Soil\n\n\" The upper limit of soil is the boundary between soil and air, shallow water, live plants, or plant materials that have not begun to decompose. Areas are not considered to have soil if the surface is permanently covered by water too deep (typically more than 2.5 meters) for the growth of rooted plants.\n\nThe lower boundary that separates soil from the nonsoil underneath is most difficult to define. Soil consists of horizons near the Earth's surface that, in contrast to the underlying parent material, have been altered by the interactions of climate, relief, and living organisms over time. Commonly, soil grades at its lower boundary to hard rock or to earthy materials virtually devoid of animals, roots, or other marks of biological activity. For purposes of classification, the lower boundary of soil is arbitrarily set at 200 cm.\" Soil taxonomy, 2nd Ed., quoted in http://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/edu/?cid=nrcs142p2_054280" ], "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "regolith" } ], "xrefs" : [ { "val" : "LTER:535" }, { "val" : "SPIRE:Soil" }, { "val" : "SWEETRealm:Soil" }, { "val" : "https://en.wikipedia.org/wiki/Soil" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The various 'has part' and 'has quality' relations may not hold true for all soils; however, I have yet to find counter examples. Require input from a pedologist or similar. [pbuttigieg]" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00001999", "lbl" : "marine water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lentic water body which is composed primarily of marine water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "body of marine water" }, { "pred" : "hasExactSynonym", "val" : "marine waterbody" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002000", "lbl" : "slope", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "flank" }, { "pred" : "hasRelatedSynonym", "val" : "side" } ], "xrefs" : [ { "val" : "EcoLexicon:slope" }, { "val" : "SWEETRealm:Slope" }, { "val" : "https://en.wikipedia.org/wiki/Slope" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002001", "lbl" : "waste water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water that has been adversely affected in quality by anthropogenic influence.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wastewater" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC" ], "xrefs" : [ { "val" : "EcoLexicon:waste_water" }, { "val" : "SWEETRealm:Wastewater" }, { "val" : "https://en.wikipedia.org/wiki/Waste_water" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002002", "lbl" : "obsolete food product", "type" : "CLASS", "meta" : { "comments" : [ "The FAO has the following definition for \"food\": \"Any substance, whether processed, semi-processed, or raw, which is intended for human consumption, and includes drink, chewing gum and any substance which has been used in the manufacture, preparation or treatment of \"food\" but does not include cosmetics or tobacco or substances used only as drugs.\" (Nutrition Division/Meeting Programming and Documentation Service, FAO, 2013 (MI198) adopted from Codex Alimentarius Commission, Procedural Manual, Twentieth edition, 2011 (ftp://ftp.fao.org/codex/Publications/ProcManuals/Manual_20e.pdf). )" ], "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC" ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Food" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FOODON:00001002" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002003", "lbl" : "fecal material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An excreta material which is composed primarily of feces, an excreta consisting of waste products expelled from an animal's digestive tract through the anus (or cloaca) during defecation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Feces" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.", "This is distinct from classes such as http://purl.obolibrary.org/obo/UBERON_0001988 in that it refers to the environmental material composed primarily of feces rather than 'just' feces." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "faeces material" }, { "pred" : "hasExactSynonym", "val" : "feces material" }, { "pred" : "hasRelatedSynonym", "val" : "droppings" }, { "pred" : "hasRelatedSynonym", "val" : "frass" }, { "pred" : "hasRelatedSynonym", "val" : "pellet" } ], "xrefs" : [ { "val" : "EcoLexicon:drop" }, { "val" : "SPIRE:Dung" }, { "val" : "SWEETRealm:Drop" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002004", "lbl" : "obsolete physical object of mesoscopic geological size", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object which is large enough to be visible to humans, but small enough that humans can handle the object (i.e. transport it, examine it, etc) in its entirety with little to no technological assistance.", "xrefs" : [ "MA:ma" ] }, "comments" : [ "This is a legacy class from ENVO's early versions. It will be depopulated and filled in by inference using a PATO quality. Not to be confused with \"mesoscopic\" as defined in physics, which deals with objects typically between 10e-6 and 10-8 meters in diameter." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "mesoscopic physical object" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002005", "lbl" : "air", "type" : "CLASS", "meta" : { "definition" : { "val" : "The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.", "xrefs" : [ "https://en.wikipedia.org/wiki/Air" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC", "\"envoPolar\"" ], "xrefs" : [ { "val" : "EcoLexicon:air" }, { "val" : "LTER:18" }, { "val" : "SWEETRealm:Air" }, { "val" : "https://en.wikipedia.org/wiki/Air" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002006", "lbl" : "liquid water", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material primarily composed of dihydrogen oxide in its liquid form.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "water" } ], "xrefs" : [ { "val" : "EcoLexicon:water" }, { "val" : "LTER:617" }, { "val" : "https://en.wikipedia.org/wiki/Water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002007", "lbl" : "sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate environmental material which is formed as a result of the transport and deposition of particles by flowing liquid.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sediment" ] }, "comments" : [ "Sediment is typically deposited on the bed or bottom of a body of water or other liquid." ], "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC", "\"envoPolar\"" ], "xrefs" : [ { "val" : "EcoLexicon:sediment" }, { "val" : "EcoLexicon:sedimentation" }, { "val" : "LTER:492" }, { "val" : "LTER:493" }, { "val" : "SWEETRealm:Sediment" }, { "val" : "https://en.wikipedia.org/wiki/Sediment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002008", "lbl" : "dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate environmental material with diameters less than 500 micrometers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dust" ] }, "comments" : [ "Dust occurs in and may be deposited from the atmosphere." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "EcoLexicon:dust" }, { "val" : "SWEETRealm:Dust" }, { "val" : "https://en.wikipedia.org/wiki/Dust" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002009", "lbl" : "obsolete terrestrial habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A habitat that is on or at the boundary of the surface of the Earth.", "xrefs" : [ "NM:nm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002010", "lbl" : "saline water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which contains a significant concentration of dissolved salts." }, "comments" : [ "The threshold salt concentration for classifying water as saline varies, but typically begins at about 1,000 to 3,000 parts salt per million parts water or 0.1–0.3% salt by weight." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "salt water" } ], "xrefs" : [ { "val" : "EcoLexicon:saltwater" }, { "val" : "SWEETRealm:SalineWater" }, { "val" : "SWEETRealm:SaltWater" }, { "val" : "https://en.wikipedia.org/wiki/Saline_water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002011", "lbl" : "fresh water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which has a low concentration of dissolved solutes, particularly that of sodium chloride." }, "comments" : [ "The lower bound of solute concentration required for water to be considered freshwater is variable, but is always less than that of seawater, and often cited as less than 1 gram of solutes per 1 litre of water." ], "subsets" : [ "\"envoEmpo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "freshwater" }, { "pred" : "hasRelatedSynonym", "val" : "sweet water" } ], "xrefs" : [ { "val" : "EcoLexicon:fresh_water" }, { "val" : "LTER:216" }, { "val" : "SWEETRealm:FreshWater" }, { "val" : "https://en.wikipedia.org/wiki/Fresh_water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002012", "lbl" : "hypersaline water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which contains a highly increased concentration of dissolved salts, surpassing the average salinity of seawater." }, "comments" : [ "The average salinity of sea water is assumed to be around 35,000 ppm, equivalent to 35 grams of salt per one liter (or kilogram) of water." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We make no commitment to a particular threshold; this should be described on the data/information layer according to the norms of a discipline, accepted standard, or similar reference." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002013", "lbl" : "igneous rock", "type" : "CLASS", "meta" : { "definition" : { "val" : "Rock formed from molten magma.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rock_%28geology%29" ] }, "xrefs" : [ { "val" : "EcoLexicon:igneous_rock" }, { "val" : "SWEETRealm:IgneousRock" }, { "val" : "https://en.wikipedia.org/wiki/Igneous_rock" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002014", "lbl" : "plutonic rock", "type" : "CLASS", "meta" : { "definition" : { "val" : "An igneous rock that results from the crystallization of a magma below the surface of the Earth.", "xrefs" : [ "https://en.wikipedia.org/wiki/Plutonic_rock" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "intrusive rock" } ], "xrefs" : [ { "val" : "SWEETRealm:IntrusiveRock" }, { "val" : "https://en.wikipedia.org/wiki/Plutonic_rock" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002015", "lbl" : "volcanic rock", "type" : "CLASS", "meta" : { "definition" : { "val" : "An igneous rock that results from magma reaching the surface either as lava or fragmental ejecta.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rock_%28geology%29" ] }, "comments" : [ "Due to the general suggestion that volcanic rock simply comes from a volcanic process, it's not immediately clear whether this is interchangeable with igneous rock." ], "xrefs" : [ { "val" : "EcoLexicon:volcanic_rock" }, { "val" : "SWEETRealm:VolcanicRock" }, { "val" : "https://en.wikipedia.org/wiki/Volcanic_rock" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002016", "lbl" : "sedimentary rock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rock formed by deposition of either clastic sediments, organic matter, or chemical precipitates (evaporites), followed by compaction of the particulate matter and cementation during diagenesis.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rock_%28geology%29" ] }, "xrefs" : [ { "val" : "EcoLexicon:sedimentary_rock" }, { "val" : "SWEETRealm:SedimentaryRock" }, { "val" : "https://en.wikipedia.org/wiki/Sedimentary_rock" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002017", "lbl" : "metamorphic rock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rock formed by subjecting any rock type (including previously-formed metamorphic rock) to different temperature and pressure conditions than those in which the original rock was formed. These temperatures and pressures are always higher than those at the Earth's surface and must be sufficiently high so as to change the original minerals into other mineral types or else into other forms of the same minerals (e.g. by recrystallisation).", "xrefs" : [ "https://en.wikipedia.org/wiki/Rock_%28geology%29" ] }, "xrefs" : [ { "val" : "EcoLexicon:metamorphic_rock" }, { "val" : "SWEETRealm:MetamorphicRock" }, { "val" : "https://en.wikipedia.org/wiki/Metamorphic_rock" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002018", "lbl" : "sewage", "type" : "CLASS", "meta" : { "definition" : { "val" : "Wastewater that is contaminated with feces or urine,", "xrefs" : [ "https://en.wikipedia.org/wiki/Wastewater" ] }, "xrefs" : [ { "val" : "SWEETRealm:Sewage" }, { "val" : "https://en.wikipedia.org/wiki/Sewage" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002019", "lbl" : "brackish water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which has a higher salinity than fresh water but a lower salinity than marine water." }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "EcoLexicon:brackish_water" }, { "val" : "LTER:702" }, { "val" : "SPIRE:Brackish_water" }, { "val" : "SWEETRealm:BrackishWater" }, { "val" : "https://en.wikipedia.org/wiki/Brackish_water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002020", "lbl" : "obsolete extreme habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A habitat having at least one environmental quality that tends towards either the largest or smallest element of the set. 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A subset for wwfBiome classes now gathers all WWF biome classes." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "WWF major habitat type" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:00000446" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002039", "lbl" : "obsolete bone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The rigid organs that form part of the endoskeleton of vertebrates.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bone" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Bone" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "UBERON:0001474" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002040", "lbl" : "wood", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "EcoLexicon:wood" }, { "val" : "LTER:637" }, { "val" : "SWEETRealm:Wood" }, { "val" : "https://en.wikipedia.org/wiki/Wood" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002041", "lbl" : "obsolete ground water", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "EcoLexicon:groundwater" }, { "val" : "LTER:235" }, { "val" : "SWEETRealm:Groundwater" }, { "val" : "https://en.wikipedia.org/wiki/Ground_water" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:01001004" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002042", "lbl" : "surface water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water that is found on the surface of an astronomical object.", "xrefs" : [ "https://en.wikipedia.org/wiki/Surface_water" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002043", "lbl" : "wastewater treatment plant", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "EcoLexicon:wastewater_treatment_plant" }, { "val" : "https://en.wikipedia.org/wiki/Wastewater_treatment_plant" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002044", "lbl" : "sludge", "type" : "CLASS", "meta" : { "definition" : { "val" : "The residual semi-solid material left from domestic or industrial processes, or wastewater treatment processes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sludge" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC" ], "xrefs" : [ { "val" : "EcoLexicon:sludge" }, { "val" : "https://en.wikipedia.org/wiki/Sludge" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002045", "lbl" : "anaerobic sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment characterised by the absence of oxygen.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anoxic sediment" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002046", "lbl" : "activated sludge", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "EcoLexicon:active_sludge" }, { "val" : "https://en.wikipedia.org/wiki/Activated_sludge" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002047", "lbl" : "urine material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An excreta material which is composed primarily of urine, a liquid excreta containing water and waste products made by the kidneys, stored in the bladder, and leaves the body through the urethra.", "xrefs" : [ "MA:ma", "URL:http://www.stjude.org/stjude/hospital/med_terms.jsp" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Urine" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002048", "lbl" : "chondrite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stony meteorite that have not been modified due to melting or differentiation of the parent body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Chondrite" ] }, "xrefs" : [ { "val" : "SWEETRealm:Chondrite" }, { "val" : "https://en.wikipedia.org/wiki/Chondrite" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002049", "lbl" : "stony meteorite", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Stony_meteorite" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002050", "lbl" : "achondrite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stony meteorite that is made of material similar to terrestrial basalts or plutonic rocks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Achondrite" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Achondrite" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002051", "lbl" : "stony-iron meteorite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A meteorite that consists of a mixture of iron-nickel metal and silicate minerals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Meteorite#Meteorite_types" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002052", "lbl" : "iron meteorite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A meteorite that overwhelmingly of nickel-iron alloys.", "xrefs" : [ "https://en.wikipedia.org/wiki/Iron_meteorite" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Iron_meteorite" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002053", "lbl" : "limestone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sedimentary rock which is composed primarily of calcium carbonate in the form of calcite or aragnoite.", "xrefs" : [ "https://en.wikipedia.org/wiki/Limestone" ] }, "xrefs" : [ { "val" : "EcoLexicon:limestone" }, { "val" : "https://en.wikipedia.org/wiki/Limestone" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "An interesting reasoning error was generated when this class had \"composed primariy of some CHEBI:calcium carbonate\". As that was a CHEBI:mineral, and minerals are disjoint from ENVO:rock, it led to an unsatisfiable class. The current axiom works around this, but this is requires some sort of geological convention to diffferentiate between masses of minerals and rocks that are composed primarily of minerals." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002054", "lbl" : "chalk", "type" : "CLASS", "meta" : { "definition" : { "val" : "Limestone which is soft, white, and porous.", "xrefs" : [ "MA:ma" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Chalk" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002055", "lbl" : "sandstone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sedimentary rock composed mainly of sand-size mineral or rock grains.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sandstone" ] }, "xrefs" : [ { "val" : "EcoLexicon:sandstone" }, { "val" : "https://en.wikipedia.org/wiki/Sandstone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002056", "lbl" : "shale", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fine-grained sedimentary rock whose original constituents were clays or muds. It is characterized by thin laminae breaking with an irregular curving fracture, often splintery and usually parallel to the often-indistinguishable bedding plane.", "xrefs" : [ "https://en.wikipedia.org/wiki/Shale" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Shale" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002057", "lbl" : "raw primary sludge", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002058", "lbl" : "secondary sludge", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002059", "lbl" : "biosolids", "type" : "CLASS", "meta" : { "definition" : { "val" : "A treated form of sludge, sometimes used as a fertilizer in agriculture.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sludge" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Biosolids" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002060", "lbl" : "oil sludge", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid or gel in motor oil caused by the oil gelling or solidifying, usually at temperatures lower than 100deg C.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oil_sludge" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Oil_sludge" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002061", "lbl" : "oil spill", "type" : "CLASS", "meta" : { "definition" : { "val" : "The result of the unintentional release of liquid petroleum hydrocarbon into the environment as a result of human activity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oil_spill" ] }, "xrefs" : [ { "val" : "SWEETRealm:OilSpill" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002062", "lbl" : "obsolete oil", "type" : "CLASS", "meta" : { "definition" : { "val" : "OBSOLETE.", "xrefs" : [ "MA:ma" ] }, "comments" : [ "Deleted due to multiple occurence of the same term." ], "xrefs" : [ { "val" : "MA:ma" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:00002985" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002063", "lbl" : "oil seep", "type" : "CLASS", "meta" : { "definition" : { "val" : "The result of the release of natural hydrocarbons to the surface of the earth, including beneath the sea, by natural geological processes.", "xrefs" : [ "MA:ma" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Oil_seep" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002112", "lbl" : "gold mine drainage", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mine drainage which is formed as a result of the mining of gold." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002113", "lbl" : "deep marine sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment that accumulates in the flat or very gently sloping areas of the deep ocean basin floor. The three main types of deep marine sediment, also known as pelagic sediment, are siliceous oozes, calcareous oozes, and red clays.", "xrefs" : [ "https://en.wikipedia.org/wiki/Marine_sediment#_note-8" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "deep marine sediments" }, { "pred" : "hasRelatedSynonym", "val" : "pelagic sediment {alternative name}" } ], "xrefs" : [ { "val" : "EcoLexicon:marine_sediment" }, { "val" : "EcoLexicon:marine_sedimentation" }, { "val" : "SWEETRealm:MarineSediment" }, { "val" : "https://en.wikipedia.org/wiki/Marine_sediment" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002114", "lbl" : "chemically enriched sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment which has increased levels of one or more chemical compounds." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002115", "lbl" : "petroleum enriched sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organically enriched sediment which has increased levels of petroleum." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002116", "lbl" : "contaminated soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of contaminated soil is a portion of soil with elevated levels of some contaminant." }, "comments" : [ "\"contaminant\" is more of a disposition - any material entity can be a contaminant in particular circumstances." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002117", "lbl" : "creosote contaminated soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has elevated concentrations of creosote." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002118", "lbl" : "sea sand", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002119", "lbl" : "alkaline hot spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A alkaline spring through which groundwater, heated by geothermal energy, flows.", "xrefs" : [ "https://orcid.org/0000-0002-4366-3088", "MA:ma" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002120", "lbl" : "acidic hot spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "An acidic spring through which groundwater, heated by geothermal energy, flows.", "xrefs" : [ "https://orcid.org/0000-0002-4366-3088", "MA:ma" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "acid hot spring" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002121", "lbl" : "alkaline salt lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A saline lake which has a high pH." }, "comments" : [ "The pH of alkaline lakes is typically between 9 and 12. They are characterized by high concentrations of carbonate salts, typically sodium carbonate (and related salt complexes), giving rise to their alkalinity. In addition, many soda lakes also contain high concentrations of sodium chloride and other dissolved salts, making them saline or hypersaline lakes as well. 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A vessel in which is carried out a chemical process which involves organisms or biochemically active substances derived from such organisms. This process can either be aerobic or anaerobic.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bioreactor" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002126", "lbl" : "aerobic bioreactor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bioreactor in which the contained material is well-oxygenated." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002127", "lbl" : "stream sediment", "type" : "CLASS", "meta" : { "comments" : [ "Revise adjacent to. Consider sampled stream sediment. Dry stream sediment." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002128", "lbl" : "mesophilic sulfur spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sulfur spring through which water at a temperature optimal for the growth of mesophillic microorganism (approximately 20 to 45 degrees Celsius) flows.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mesophile", "https://orcid.org/0000-0002-4366-3088" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002129", "lbl" : "anaerobic sludge", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002130", "lbl" : "hypolimnion", "type" : "CLASS", "meta" : { "definition" : { "val" : "The dense, bottom layer of water in a thermally-stratified lake. 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Cryogenic processes are the dominant soil-forming processes.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "gelisol" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Cryosol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002237", "lbl" : "chernozem", "type" : "CLASS", "meta" : { "definition" : { "val" : "Chernozems are soils with a thick black surface layer that is rich in organic matter.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "black earth" }, { "pred" : "hasRelatedSynonym", "val" : "boroll" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Chernozem" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002238", "lbl" : "durisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Durisols are associated mainly with old surfaces in arid and semi-arid environments and accommodate very shallow to moderately deep, moderately well- to well-drained soils that contain cemented secondary silica (SiO2) within 100 cm of the soil surface.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Durisol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002239", "lbl" : "calcisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Calcisols are soils in which there is substantial secondary accumulation of lime. Calcisols are common in highly calcareous parent materials and widespread in arid and semi-arid environments.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "calcarosol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002240", "lbl" : "kastanozem", "type" : "CLASS", "meta" : { "definition" : { "val" : "Kastanozems are dry grassland soils, among them the zonal soils of the short-grass steppe belt, south of the Eurasian tall-grass steppe belt with Chernozems. Kastanozems have a similar profile to that of Chernozems but the humus-rich surface horizon is thinner and not as dark as that of the Chernozems and they show more prominent accumulation of secondary carbonates.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002241", "lbl" : "leptosol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Leptosols are very shallow soils over continuous rock and soils that are extremely gravelly and/or stony. Leptosols are azonal soils and particularly common in mountainous regions.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "gravelly soil" }, { "pred" : "hasNarrowSynonym", "val" : "stony soil" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002242", "lbl" : "lixisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Lixisols are soils that have a higher clay content in the subsoil than in the topsoil as a result of pedogenetic processes (especially clay migration) leading to an argic subsoil horizon. Lixisols have a high base saturation and low-activity clays at certain depths.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Lixisol" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002243", "lbl" : "histosol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Histosols comprise soils formed in organic material. These vary from soils developed in predominantly moss peat in boreal, arctic and subarctic regions, via moss peat, reeds/ sedge peat (fen) and forest peat in temperate regions to mangrove peat and swamp forest peat in the humid tropics. Histosols are found at all altitudes, but the vast majority occurs in lowlands.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Histosol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002244", "lbl" : "gleysol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Gleysols are wetland soils that, unless drained, are saturated with groundwater for long enough periods to develop a characteristic gleyic colour pattern. This pattern is essentially made up of reddish, brownish or yellowish colours at ped surfaces and/or in the upper soil layer or layers, in combination with greyish/bluish colours inside the peds and/or deeper in the soil.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "gley soil" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Gleysol" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002245", "lbl" : "gypsisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Gypsisols are soils with substantial secondary accumulation of gypsum (calcium sulfate). These soils are found in the driest parts of the arid climate zone.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Gypsisol" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002246", "lbl" : "ferralsol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ferralsols represent the classical, deeply weathered, red or yellow soils of the humid tropics. These soils have diffuse horizon boundaries, a clay assemblage dominated by low-activity clays (mainly kaolinite) and a high content of sesquioxides.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "oxisol" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Ferralsol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002247", "lbl" : "nitisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Nitisols are deep, well-drained, red, tropical soils with diffuse horizon boundaries and a subsurface horizon with more than 30 percent clay and moderate to strong angular blocky structure elements that easily fall apart into characteristic shiny, polyhedric (nutty) elements. Weathering is relatively advanced but Nitisols are far more productive than most other red, tropical soils.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002248", "lbl" : "luvisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Luvisols are soils that have a higher clay content in the subsoil than in the topsoil as a result of pedogenetic processes (especially clay migration) leading to an argic subsoil horizon. Luvisols have high-activity clays throughout the argic horizon and a high base saturation at certain depths.", "xrefs" : [ "http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002249", "lbl" : "phaeozem", "type" : "CLASS", "meta" : { "definition" : { "val" : "Phaeozems accommodate soils of relatively wet grassland and forest regions in moderately continental climates. Phaeozems are much like Chernozems and Kastanozems but are leached more intensively. Consequently, they have dark, humus rich surface horizons that, in comparison with Chernozems and Kastanozems, are less rich in bases. Phaeozems may or may not have secondary carbonates but have a high base saturation in the upper metre of the soil.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002250", "lbl" : "plinthosol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Plinthosols are soils with plinthite, petroplinthite or pisoliths. Plinthite is an Fe-rich (in some cases also Mn-rich), humus-poor mixture of kaolinitic clay (and other products of strong weathering such as gibbsite) with quartz and other constituents that changes irreversibly to a layer with hard nodules, a hardpan or irregular aggregates on exposure to repeated wetting and drying. Petroplinthite is a continuous, fractured or broken sheet of connected, strongly cemented to indurated nodules or mottles. Pisoliths are discrete strongly cemented to indurated nodules. Both petroplinthite and pisoliths develop from plinthite by hardening.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002251", "lbl" : "planosol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Planosols are soils with a light-coloured, surface horizon that shows signs of periodic water stagnation and abruptly overlies a dense, slowly permeable subsoil with significantly more clay than the surface horizon.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002252", "lbl" : "solonchak", "type" : "CLASS", "meta" : { "definition" : { "val" : "Solonchaks are soils that have a high concentration of soluble salts at some time in the year. Solonchaks are largely confined to the arid and semi-arid climate zones and to coastal regions in all climates.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Solonchak" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002253", "lbl" : "umbrisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Umbrisols are soils in which organic matter has accumulated within the mineral surface soil (in most cases with low base saturation) to the extent that it significantly affects the behaviour and utilization of the soil.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Umbrisol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002254", "lbl" : "vertisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "A soil in which there is a high content of expansive clay known as montmorillonite that forms deep cracks in drier seasons or years. Alternate shrinking and swelling causes self-mulching, where the soil material consistently mixes itself, causing vertisols to have an extremely deep A horizon and no B horizon.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vertisol" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Vertisol" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002255", "lbl" : "solonetz", "type" : "CLASS", "meta" : { "definition" : { "val" : "Solonetz are soils with a dense, strongly structured, clayey subsurface horizon that has a high proportion of adsorbed Na and/or Mg ions. Solonetz that contain free soda (Na2CO3) are strongly alkaline (field pH > 8.5).", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Solonetz" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002256", "lbl" : "regosol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Regosols form a taxonomic remnant group containing all soils that could not be accommodated in any of the other RSGs. In practice, Regosols are very weakly developed mineral soils in unconsolidated materials that do not have a mollic or umbric horizon, are not very shallow or very rich in gravels (Leptosols), sandy (Arenosols) or with fluvic materials (Fluvisols). Regosols are extensive in eroding lands, particularly in arid and semi-arid areas and in mountainous terrain.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Regosol" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002257", "lbl" : "podzol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Podzols are soils with a typically ash-grey upper subsurface horizon, bleached by loss of organic matter and iron oxides, on top of a dark accumulation horizon with brown, reddish or black illuviated humus and/or reddish Fe compounds. Podzols occur in humid areas in the boreal and temperate zones and locally also in the tropics.", "xrefs" : [ "http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "podsol" }, { "pred" : "hasRelatedSynonym", "val" : "podosolic soil" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Podzol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002258", "lbl" : "loam", "type" : "CLASS", "meta" : { "definition" : { "val" : "A soil which is composed of approximately equal proportions of sand and silt, with a smaller proportion of clay.", "xrefs" : [ "https://en.wikipedia.org/wiki/Loam" ] }, "comments" : [ "Some authorities consider loam to be any soil material that contains 7 to 27% clay, 28 to 50% silt, and less than 52% sand." ], "xrefs" : [ { "val" : "EcoLexicon:loam" }, { "val" : "SWEETRealm:Loam" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002259", "lbl" : "agricultural soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of an ecosystem used for agricultural activities." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002260", "lbl" : "dune soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of some dune." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002261", "lbl" : "forest soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of soil which is found in a forested area." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002262", "lbl" : "clay soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is primarily composed of clay." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002263", "lbl" : "garden soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of soil which is found in a garden." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002264", "lbl" : "waste material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material which is not the desired output of a process and which is typically the input of a process which removes it from its producer (e.g. a disposal process)." }, "xrefs" : [ { "val" : "EcoLexicon:waste" }, { "val" : "SWEETRealm:Waste" }, { "val" : "https://en.wikipedia.org/wiki/Waste" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This seems more like a role than a material. Anything can be waste. Thus, a \"waste\" role or disposition will be created and this class can then be populated by inference: any environmental material which has [role,disposition] waste will be considered a waste material." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002265", "lbl" : "obsolete agricultural waste", "type" : "CLASS", "meta" : { "definition" : { "val" : "Wastewater produced in the course of agricultural activities", "xrefs" : [ "https://en.wikipedia.org/wiki/Agricultural_wastewater_treatment" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Agricultural_waste" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:01000371" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002266", "lbl" : "chicken breeding waste material", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "chicken breeding waste" }, { "pred" : "hasRelatedSynonym", "val" : "chicken yard waste" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002267", "lbl" : "industrial waste material", "type" : "CLASS", "meta" : { "definition" : { "val" : "Industrial wastes are liquid, solid and gaseous wastes originating from the manufacture of specific products.", "xrefs" : [ "ISBN:978-92-1-161386-5", "http://stats.oecd.org/glossary/detail.asp?ID=1340" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "industrial waste" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This will become a defined class, with subclasses added through inference based on material having a 'waste role' and being associated with industrial entities." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002268", "lbl" : "sphagnum bog", "type" : "CLASS", "meta" : { "definition" : { "val" : "A peatland dominated by species of the Bryophyte Sphagnum.", "xrefs" : [ "MA:ma" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002269", "lbl" : "thermocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cline across which temperature changes rapidly.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermocline" ] }, "xrefs" : [ { "val" : "EcoLexicon:thermocline" }, { "val" : "SWEETRealm:Thermocline" }, { "val" : "https://en.wikipedia.org/wiki/Thermocline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002270", "lbl" : "chemocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cline across which the chemical composition of a fluid changes rapidly.", "xrefs" : [ "MA:ma" ] }, "comments" : [ "This cline is typically horizontal, with qualities varying with depth." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Chemocline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002271", "lbl" : "nuclear power plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nuclear power plant is a power plant which uses heat generated by a radioactive decay in a nuclear reactor to convert water into steam in order to drive turbines in electrical generators through pressure.", "xrefs" : [ "https://en.wikipedia.org/wiki/Nuclear_power_plant" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Nuclear_power_plant" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002272", "lbl" : "waste treatment plant", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "WWTP" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002273", "lbl" : "fluvisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Fluvisols accommodate genetically young, azonal soils in alluvial deposits.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Fluvisols" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002274", "lbl" : "stagnosol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Stagnosols are soils with a perched water table showing redoximorphic features caused by surface water. Stagnosols are periodically wet and mottled in the topsoil and subsoil, with or without concretions and/or bleaching.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002275", "lbl" : "technosol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Technosols are soils whose properties and pedogenesis are dominated by their technical origin. They contain a significant amount of artefacts (something in the soil recognizably made or extracted from the earth by humans), or are sealed by technic hard rock (material created by humans, having properties unlike natural rock). They include soils from wastes (landfills, sludge, cinders, mine spoils and ashes), pavements with their underlying unconsolidated materials, soils with geomembranes and constructed soils in human-made materials.", "xrefs" : [ "FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002276", "lbl" : "animal waste material", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "animal waste" } ], "xrefs" : [ { "val" : "SWEETRealm:AnimalWaste" }, { "val" : "https://en.wikipedia.org/wiki/Animal_waste" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This will become a defined class, with subclasses added through inference based on material having a 'waste role' and being associated with animal metabolism." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002277", "lbl" : "back-arc basin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depression in the sea floor that results from the collision of continental plates; the weight of the sinking plate causes the overlying plate to stretch and thin, causing a basin in the overlying plate. Sometimes, the Earth's crust in these basins stretches so much it cracks, allowing magma through from the mantle beneath. Hence, basins often contain active volcanoes and hydrothermal vents.", "xrefs" : [ "webpage:http://www.venturedeepocean.org/vents/stretching.html" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "basin" }, { "pred" : "hasExactSynonym", "val" : "backarc basin" } ], "xrefs" : [ { "val" : "EcoLexicon:basin" }, { "val" : "SWEETRealm:BackArcBasin" }, { "val" : "SWEETRealm:Basin" }, { "val" : "https://en.wikipedia.org/wiki/Back-arc_basin" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002297", "lbl" : "obsolete environmental feature", "type" : "CLASS", "meta" : { "definition" : { "val" : "OBSOLETE A material entity which determines an environmental system.", "xrefs" : [ "DOI:10.1186/2041-1480-4-43", "NM:nm", "ORCID:0000-0002-4366-3088" ] }, "comments" : [ "A material entity determines an environmental system when its removal would cause the collapse of that system. For example, a seamount determines a seamount environment, acting as its 'hub'. This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised." ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002450", "lbl" : "ocean basin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural basin that is below sea level.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ocean_basin" ] }, "comments" : [ "This class is defined in its geological sense:\nhttps://en.wikipedia.org/wiki/ Hydrologically, an oceanic basin may be anywhere on Earth that is covered by seawater, but geologically ocean basins are large geologic basins that are below sea level. Geologically, there are other undersea geomorphological features such as the continental shelves, the deep ocean trenches, and the undersea mountain ranges (for example, the mid-Atlantic ridge) which are not considered to be part of the ocean basins; while hydrologically, oceanic basins include the flanking continental shelves and shallow, epeiric seas." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "EcoLexicon:ocean_basin" }, { "val" : "https://en.wikipedia.org/wiki/Ocean_basin" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002869", "lbl" : "hay", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hay is grass, legumes or other herbaceous plants that have been cut, dried, and stored for use as animal fodder, particularly for grazing livestock such as cattle, horses, goats, and sheep.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hay" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Hay" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002870", "lbl" : "adobe", "type" : "CLASS", "meta" : { "definition" : { "val" : "A natural building material mode from sand, clay, water, and some kind of fibrous or organic material (sticks, straw, and/or manure).", "xrefs" : [ "https://en.wikipedia.org/wiki/Adobe" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002871", "lbl" : "alluvial soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has been eroded and influenced by flowing water and redeposited in a non-marine setting." }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Alluvial_soil" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002872", "lbl" : "bagasse", "type" : "CLASS", "meta" : { "definition" : { "val" : "The biomass remaining after sugarcane stalks are crushed to extract their juice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bagasse" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sugarcane bagasse" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Bagasse" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002873", "lbl" : "organic waste material", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "organic waste" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Organic_waste" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This should probably be merged with biological waste material." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002874", "lbl" : "air conditioning unit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactuered product which is capable of removing heat and controlling the humidity of the air within a site." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "A/C" }, { "pred" : "hasBroadSynonym", "val" : "A/C unit" }, { "pred" : "hasBroadSynonym", "val" : "air conditioner" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002875", "lbl" : "oil contaminated soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has elevated concentrations of oil." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002926", "lbl" : "warm seep", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002982", "lbl" : "clay", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate environmental material which 1) is composed primarily of clay particles, with only minor proportions of other materials, 2) demonstrates plasticity when wet, and 3) is capable of hardening when dried or fired.", "xrefs" : [ "https://en.wikipedia.org/wiki/Clay" ] }, "comments" : [ "This definition is intentionally ambiguous to support the multiple thresholds set by different authorities.The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam. Similar mixtures with greater than 40% clay are often considered clay soils." ], "xrefs" : [ { "val" : "EcoLexicon:clay" }, { "val" : "SWEETRealm:Clay" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002983", "lbl" : "fuel oil", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oil which 1) is liquid at room temperature (approximately 20 degrees Celsius) 2) is intended to be burned in a furnace or boiler for the generation of heat or used in an engine for the generation of power, 3) is obtained from petroleum distillation, either as a distillate or a residue, 4) composed of long hydrocarbon chains, particularly alkanes, cycloalkanes and aromatics.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fuel_oil" ] }, "comments" : [ "Oils having a flash point of approximately 42 degrees Celsius and oils burned in cotton or wool-wick burners are not typically considered fuel oils. The term fuel oil is also used in a stricter sense to refer only to the heaviest commercial fuel that can be obtained from crude oil, i.e., heavier than gasoline and naphtha." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "furnace oil" }, { "pred" : "hasExactSynonym", "val" : "heavy oil" }, { "pred" : "hasExactSynonym", "val" : "marine fuel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002984", "lbl" : "petroleum", "type" : "CLASS", "meta" : { "definition" : { "val" : "A naturally occurring flammable liquid consisting of a complex mixture of hydrocarbons of various molecular weights and other liquid organic compounds, that are found in geologic formations beneath the planetary surfaces.", "xrefs" : [ "https://en.wikipedia.org/wiki/Petroleum" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "crude oil" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Petroleum" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002985", "lbl" : "oil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nonpolar, hydrophobic, and lipophilic material which is a viscous liquid at ambient temperatures (about 20 degrees Celsius) or slightly warmer.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oil" ] }, "xrefs" : [ { "val" : "EcoLexicon:oil" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002986", "lbl" : "obsolete Udvardy biome", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:00000446" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002987", "lbl" : "obsolete Evergreen sclerophyllous forests, scrub, or woodlands", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Evergreen_sclerophyllous_forests,_scrub,_or_woodlands" } ], "basicPropertyValues" : [ { "pred" : 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} ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002993", "lbl" : "obsolete Tropical humid forests", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:01000228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002994", "lbl" : "obsolete Mixed island systems", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002995", "lbl" : "obsolete Tundra communities and barren Arctic deserts", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:01000180" }, { "pred" : 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Structure liming can reduce losses of clay and nutrients from soil aggregates." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005767", "lbl" : "manured soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has, as a part, a portion of either fresh or processed animal manure." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005768", "lbl" : "orchid soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has properties to which plants in the Family Orchidaceae have adapted, including increased levels of aeration and drainage." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005769", "lbl" : "mountain forest soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of a forest growing on a mountain." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005770", "lbl" : "beech forest soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of a forest whose communites of arborescent plants are dominated the genus Fagus.", "xrefs" : [ "https://en.wikipedia.org/wiki/Beech" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005771", "lbl" : "muddy soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is composed of a large proportion of mud, thus having properties resembling mud." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005772", "lbl" : "orchard soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil in which trees from an orchard grow." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005773", "lbl" : "pasture soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is found in a pasture and in which vegetation, such as the grass used for the grazing of ungulates, grows." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005774", "lbl" : "peat soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A histosol which is formed by the decomposition of vegetation or organic matter.", "xrefs" : [ "https://en.wikipedia.org/wiki/Peat_soil" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "turf" }, { "pred" : "hasRelatedSynonym", "val" : "peat", "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] } ], "xrefs" : [ { "val" : "EcoLexicon:peat" }, { "val" : "SWEETRealm:Peat" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005775", "lbl" : "salt contaminated soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has elevated concentrations of sodium chloride." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "salty soil" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005776", "lbl" : "peaty paddy field soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Paddy field soil which has increased levels of peat." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005777", "lbl" : "steppe soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of soil which is found in a steppe." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005778", "lbl" : "tropical soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of a tropical environment." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005779", "lbl" : "vegetable garden soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Garden soil which is part of a garden used for the cultivation of vegetables." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005780", "lbl" : "greenhouse soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of soil which is found in a greenhouse." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005781", "lbl" : "heat stressed soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is has been heated such that its chemical, physical, or biological properties are destabilised." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005782", "lbl" : "ornithogenic soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is formed from avian fecal matter.", "xrefs" : [ "http://dx.doi.org/10.1099/00207713-46-4-841", "http://phenomena.nationalgeographic.com/2015/01/20/science-word-of-the-day-ornithogenic/" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005783", "lbl" : "leafy wood soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of a woodland dominated by leafy trees." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005784", "lbl" : "spruce forest soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of a forest whose communites of arborescent plants are dominated the genus Picea.", "xrefs" : [ "https://en.wikipedia.org/wiki/Spruce" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005785", "lbl" : "obsolete volcanic soil", "type" : "CLASS", "meta" : { "comments" : [ "Incorrect equivalence axiom." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Volcanic_soil" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:01001841" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005786", "lbl" : "upland soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of some elevated land.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/upland" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005787", "lbl" : "eucalyptus forest soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is part of a forest whose communites of arborescent plants are dominated the genus Eucalyptus.", "xrefs" : [ "https://en.wikipedia.org/wiki/Eucalyptus" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005788", "lbl" : "rubber plantation soil", "type" : "CLASS", "meta" : { "comments" : [ "Soil which is part of a rubber plantation." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005789", "lbl" : "bluegrass field soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Bluegrass field soil is a soil which is found in a field of Kentucky Bluegrass (Poa pratensis)." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005790", "lbl" : "red soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has 1) low concentrations of nutrients and humus, 2) low water retention capacity, 3) textural variation from sand to clay, 4) a porous and friable structure, and 5) low concentrations of soluble salts.", "xrefs" : [ "https://en.wikipedia.org/wiki/Red_soil" ] }, "comments" : [ "Red soil typically derives from crystalline rock in warm, temperate, moist climates under deciduous or mixed forest. It has thin organic and organic-mineral layers, a black brown leached layer resting on an illuvium red layer. The majority of red soils have a loamy texture. Their chemical composition varies across regions, but often includes non-soluble material 90.47%, iron 3.61%, aluminium 2.92%, organic matter 1.01%, magnesium 0.70%, lime 0.56%, carbon dioxide 0.30%, potash 0.24%, soda 0.12%, phosphorus 0.09% and nitrogen 0.08%. \n\nOn the uplands, they are thin, poor and gravelly, sandy, or stony and porous, light-colored soils on which food crops like bajra can be grown. In contrast, on the lower plains and valleys they are rich, deep, dark colored fertile loam on which, under irrigation, can produce excellent crops like cotton, wheat, pulses, tobacco, jowar, linseed, millet, potatoes and fruits." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005791", "lbl" : "sterile water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sterile water is water which does not contain lliving organisms." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005792", "lbl" : "underground water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which has physicochemical properties determined by processes which occur beneath the planetary crust." }, "comments" : [ "This class references any water that's under a planetary surface. For water that is in an aquifer, see \"groundwater\" (ENVO:01001004). Previously, this class included both." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "subterranean water" } ], "xrefs" : [ { "val" : "SWEETRealm:UndergroundWater" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005793", "lbl" : "muddy water", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005794", "lbl" : "water scum", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005795", "lbl" : "marine mud", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mud which is part of a marine ecosystem." }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005796", "lbl" : "marine sludge", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005797", "lbl" : "lake bottom mud", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mud which constitutes the bed of a lake." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005798", "lbl" : "acid dune sand", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005799", "lbl" : "rocky sand", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005800", "lbl" : "desert sand", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sand which is part of a desert." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005801", "lbl" : "rhizosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "The narrow region of soil that is directly influenced by root secretions and associated soil microorganisms.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rhizosphere_%28ecology%29" ] }, "xrefs" : [ { "val" : "LTER:472" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005802", "lbl" : "bulk soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil that is not penetrated by the root systems of plants.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bulk_soil" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Bulk_soil" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005803", "lbl" : "animal habitation", "type" : "CLASS", "meta" : { "definition" : { "val" : "The dwelling of an animal or group of similar animals.", "xrefs" : [ "MA:ma" ] }, "comments" : [ "This class represents habitations of non-human animals. This distinction may be removed in future releases." ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "den" }, { "pred" : "hasNarrowSynonym", "val" : "nest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005804", "lbl" : "nest of ant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pile of earth, sand, pine needles, or clay or a composite of these and other materials that build up at the entrances of the subterranean dwellings of ant colonies as they are excavated. A colony is built and maintained by legions of worker ants, who carry tiny bits of dirt and pebbles in their mandibles and deposit them near the exit of the colony. They normally deposit the dirt or vegetation at the top of the hill to prevent it from sliding back into the colony, but in some species they actively sculpt the materials into specific shapes, and may create nest chambers within the mound.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ant_colony#Ant-hills" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ant's nest" }, { "pred" : "hasRelatedSynonym", "val" : "ant hill" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005805", "lbl" : "nest of bird", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bird nest is the spot in which a bird lays and incubates its eggs and raises its young.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bird_nest" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bird nest" }, { "pred" : "hasExactSynonym", "val" : "bird's nest" }, { "pred" : "hasNarrowSynonym", "val" : "eyrie" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00005806", "lbl" : "obsolete Tropical and subtropical coniferous forest biome", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:01000209" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:01000210" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00006776", "lbl" : "obsolete animal-associated habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A habitat that is in or on a living animal. Here \"animal\" denotes an individual of a species that is a sub-taxon of NCBITaxon:33208.", "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "metazoan-associated habitat" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00009001", "lbl" : "obsolete plant-associated habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A habitat that is in or on a living plant. Here \"plant\" denotes an individual of a species that is a sub-taxon of NCBITaxon:33090 (viridiplantae).", "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00009002", "lbl" : "obsolete mammalia-associated habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A habitat that is in or on a living mammal. Here \"mammal\" denotes an individual of a species that is a sub-taxon of NCBITaxon:40674.", "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00009003", "lbl" : "obsolete human-associated habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A habitat that is in or on a living animal. Here \"animal\" denotes an individual of a species that is a sub-taxon of NCBITaxon:9606.", "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] }, "comments" : [ "Used for armpits and other nasty places." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00009004", "lbl" : "obsolete insecta-associated habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A habitat that is in or on a living insect. Here \"insect\" denotes an individual of a species that is a sub-taxon of NCBITaxon:50557.", "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00009686", "lbl" : "ice rise", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice rise is an elevation which is part of an ice shelf, typically dome shared, and formed by the ice shelf overriding an obstruction in the seabed. An ice rise may be adjacent only to an ice shelf, or to an ice shelf and a sea. For some features, properly ice rises, the term island has become established through usage.", "xrefs" : [ "http://www.antarctica.ac.uk/apc/genericterms.html", "https://en.wikipedia.org/wiki/Ice_rise" ] }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Ice_rise" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00009725", "lbl" : "ice piedmont", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier covering a coastal strip of low-lying land backed by mountains, and sloping gently seaward over a distance up to 30km or more to terminate in ice cliffs or to merge with an ice shelf.", "xrefs" : [ "http://www.antarctica.ac.uk/apc/genericterms.html" ] }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00009726", "lbl" : "strand crack", "type" : "CLASS", "meta" : { "definition" : { "val" : "Fissure at the junction between an inland ice sheet, ice piedmont or ice rise and an ice shelf, the latter being subject to the rise and fall of the tide.", "xrefs" : [ "http://www.antarctica.ac.uk/apc/genericterms.html" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010005", "lbl" : "soil bulk density", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volumetric density quality which inheres in soil by virtue of some influence exerted by the soil's mass on a given volume." }, "comments" : [ "It is calculated as the dry weight of soil divided by its volume." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-10-07T02:58:33Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010358", "lbl" : "fomite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fomite is any inanimate object or substance capable of carrying infectious organisms (such as germs or parasites) and hence transferring them from one individual to another. A fomite can be anything such as a cloth or mop heads so when cleaning this is important to remember that this could aid when spreading pathogenic organisms.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fomite" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Fomite" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010442", "lbl" : "midden", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dump for domestic waste. A term used to describe any kind of feature containing waste products relating to day-to-day human life.", "xrefs" : [ "https://en.wikipedia.org/wiki/Midden" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Midden" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010483", "lbl" : "environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity which other material entities in an environmental system are primarily or partially composed of.", "xrefs" : [ "http://ontology.buffalo.edu/smith/articles/niches.html", "https://dx.doi.org/10.1186/2041-1480-4-43", "https://en.wikipedia.org/wiki/Material" ] }, "comments" : [ "Everything under this parent must be a mass noun (i.e. not countable). All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, \"ENVO:water\" is to be understood as \"environmental material composed primarly of some CHEBI:water\".", "Instances of this class are portions of environmental materials, such as seawater in bucket, a water parcel in the photic zone of a lake, or the concrete that composes a building part. Instances of these portions may have fiat or non-fiat boundaries. For example, a water parcel has not physical boundaries, while the seawater in a bucket is bounded by the internal surfaces of the bucket." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of environmental material" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010504", "lbl" : "surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.", "xrefs" : [ "URL:http://www.merriam-webster.com/dictionary/surface" ] }, "comments" : [ "This class is distinct from a geometric surface, which is two-dimensional. The idea of \"uppermost\" may be problematic. Further, the definition of layer (the superclass of surface in rev 133) references surface. This may be another issue. Perhaps this can be made into an inferred class using 'bounding layer of' some material entity, note that 'bounding layer' implies containment, which may not be valid here." ], "xrefs" : [ { "val" : "EcoLexicon:surface" }, { "val" : "http://sweetontology.net/reprSpaceGeometry/Surface" }, { "val" : "https://en.wikipedia.org/wiki/Surface" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010505", "lbl" : "aerosol", "type" : "CLASS", "meta" : { "definition" : { "val" : "Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.", "xrefs" : [ "https://en.wikipedia.org/wiki/Aerosol" ] }, "comments" : [ "Should connect to PATO as \"quality of an aerosol\"" ], "subsets" : [ "\"envoAtmo\"" ], "xrefs" : [ { "val" : "EcoLexicon:aerosol" }, { "val" : "SWEETRealm:Aerosol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010506", "lbl" : "emulsion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mixture of two immiscible (unblendable) substances. One substance (the dispersed phase) is dispersed in the other (the continuous phase).", "xrefs" : [ "https://en.wikipedia.org/wiki/Emulsion" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Emulsion" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010621", "lbl" : "medical instrument", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which has been designed for use in one or more medical procedures." }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Medical_instrument" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010622", "lbl" : "vivarium", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vivarium is an enclosure for keeping and raising organisms for observation or research. Often, a portion of the ecosystem for a particular species is simulated on a smaller scale, with controls for environmental conditions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vivarium" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Vivarium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010623", "lbl" : "dolomite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sedimentary carbonate rock and a mineral, both composed of calcium magnesium carbonate CaMg(CO3)2 found in crystals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dolomite" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Dolomite" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010624", "lbl" : "botanical garden", "type" : "CLASS", "meta" : { "definition" : { "val" : "A place where a wide variety of plants primarily categorized and documented for scientific purposes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Botanical_garden" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "botanic garden" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Botanical_garden" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00010625", "lbl" : "zoological garden", "type" : "CLASS", "meta" : { "definition" : { "val" : "A facility in which animals are confined within enclosures and displayed to the public, and in which they may also be bred.", "xrefs" : [ "https://en.wikipedia.org/wiki/Zoo" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "zoo" }, { "pred" : "hasExactSynonym", "val" : "zoological park" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00011764", "lbl" : "ocean time series station", "type" : "CLASS", "meta" : { "definition" : { "val" : "A research facility consisting of instruments that measure the properties of the oceans over time. 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Any material that is a participant in an agricultural process can be seen as an agricultural material." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class will be depopulated and eventually deprecated. Convenience class." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_0010004", "lbl" : "obsolete beverage product", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid which is specifically prepared for human consumption.", "xrefs" : [ "http://en.wikipedia.org/wiki/Beverage" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_0010005", "lbl" : "obsolete fermented beverage", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "alcoholic beverage" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FOODON:00001094" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_0010006", "lbl" : "obsolete fermented grape beverage", "type" : "CLASS", 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Some authorities consider this soil material that contains 80% or more silt and less than 12% clay. In the Udden-Wentworth scale (due to Krumbein), silt particles range between 0.0039 to 0.0625 mm, larger than clay but smaller than sand particles. ISO 14688 grades silts between 0.002 mm and 0.063 mm. In actuality, silt is chemically distinct from clay, and unlike clay, grains of silt are approximately the same size in all dimensions; furthermore, their size ranges overlap. Clays are formed from thin plate-shaped particles held together by electrostatic forces, so present a cohesion. According to the U.S. Department of Agriculture Soil Texture Classification system, the sand-silt distinction is made at the 0.05 mm particle size. The USDA system has been adopted by the Food and Agriculture Organization (FAO). In the Unified Soil Classification System (USCS) and the AASHTO Soil Classification system, the sand-silt distinction is made at the 0.075 mm particle size (i.e., material passing the #200 sieve). Silts and clays are distinguished mechanically by their plasticity." ], "xrefs" : [ { "val" : "EcoLexicon:silt" }, { "val" : "SWEETRealm:Silt" }, { "val" : "https://en.wikipedia.org/wiki/Silt" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000017", "lbl" : "sand", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate environmental material which is composed primarily of particles of sand with only minor proportions of other substances.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sand" ] }, "comments" : [ "This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider as sands soil material that contains 85% or more sand; the percentage of silt plus 1.5 times the percentage of clay does not exceed 15. coarse sand (sable grossier) 25% or more very coarse and coarse sand, and less than 50% any other one grade of sand." ], "xrefs" : [ { "val" : "EcoLexicon:sand" }, { "val" : "LTER:484" }, { "val" : "SWEETRealm:Sand" }, { "val" : "https://en.wikipedia.org/wiki/Sand" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000018", "lbl" : "gravel", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is composed primarily of pieces of gravel.", "xrefs" : [ "https://en.wikipedia.org/wiki/Gravel" ] }, "comments" : [ "As with all size-based classifications, there is considerable variation in what is considered gravel." ], "xrefs" : [ { "val" : "EcoLexicon:gravel" }, { "val" : "SWEETRealm:Gravel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000019", "lbl" : "cave floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid surface layer which 1) forms part of the boundary between the cavity of a cave and its solid container and 2) is the closest solid boundary to the gravitational centre of the astronomical body of which the cave is a part." }, "comments" : [ "surface layer with role \"walking substrate\" or similar. Indicate it is some sort of \"bottom\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000020", "lbl" : "estuarine biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "Expressions of the estuarine biome occur at wide lower courses of a rivers where they flow into a sea. Estuaries experience tidal flows and their water is a changing mixture of fresh and salt.", "xrefs" : [ "ISBN:978-92-1-161386-5", "ORCID:0000-0002-4366-3088" ] }, "xrefs" : [ { "val" : "SPIRE:Estuarine" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:17:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000021", "lbl" : "obsolete mangrove biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "Expressions of the mangrove biome are typically found in tropical and sub-tropical tidal areas, in depositional coastal environments where fine sediments (often with high organic content) collect in areas protected from high energy wave action. A variety of characteristic trees and shrubs occur here and are able to withstand a high degree of salinity as well as regions of anoxia and frequent tidal inundation. 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The daily tidal surges bring in nutrients, which tend to settle in roots of the plants within the salt marsh. The natural chemical activity of salty (or brackish) water and the tendency of algae to bloom in the shallow unshaded water also allow for great biodiversity.", "xrefs" : [ "ORCID:0000-0002-4366-3088", "https://en.wikipedia.org/wiki/Salt_marsh" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:17:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000023", "lbl" : "marine pelagic biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine pelagic biome (pelagic meaning open sea) is that of the marine water column, from the surface to the greatest depths.", "xrefs" : [ "ISBN:978-0-7506-3384-0" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:17:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000024", "lbl" : "marine benthic biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine benthic biome (benthic meaning 'bottom') encompasses the seafloor and includes such areas as shores, littoral or intertidal areas, marine coral reefs, and the deep seabed.", "xrefs" : [ "ISBN:978-0-7506-3384-0", "ORCID:0000-0002-4366-3088" ] }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "SPIRE:Benthic" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:17:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000025", "lbl" : "marine neritic benthic zone biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine neritic zone biome comprises sea floor from the high tide mark to a continental shelf break. This zone generally extends to 200 m below average sea level.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ISBN:978-0-7506-3384-0", "ORCID:0000-0002-4366-3088" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:18:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000026", "lbl" : "marine bathyal zone biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine bathyal zone biome comprises regions of the marine benthic biome between approximately 200 m and 3000 m depth. 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This zone generally coincides with the continental rise and the abyssal plain.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:18:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000028", "lbl" : "marine hadal zone biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine hadal zone biome describes sea floor deeper than 6000 m such as that of the oceanic trenches.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:18:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000029", "lbl" : "marine reef biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome expressed by strips or ridges of rocks, sand, or coral that rises to or near the surface of a body of marine water.", "xrefs" : [ "ISBN:978-0-618-45504-1", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:18:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000030", "lbl" : "marine hydrothermal vent biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine hydrothermal vent biome comprises regions of the marine benthic biome where heat generated due to tectonic activity, either at divergent plate boundaries or convergent ocean plates where back-arc spreading occurs, is released or 'vented' to the surface. The resultant high temperature water jets are laden with dissolved metals and minerals.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:18:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000031", "lbl" : "obsolete marine feature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A prominent or distinctive aspect, quality, or characteristic of a marine biome.", "xrefs" : [ "ISBN:978-0-618-45504-1", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:00001999" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-16T12:04:50Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000032", "lbl" : "neritic pelagic zone biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The neritic epipelagic zone biome comprises the marine water column above a continental shelf.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ISBN:978-0-7506-3384-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:19:19Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000033", "lbl" : "oceanic pelagic zone biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The oceanic epipelagic zone biome comprises the marine water column offshore, beyond a continental shelf.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ISBN:978-0-7506-3384-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-15T11:19:19Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000034", "lbl" : "oceanic sea surface microlayer biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The oceanic sea surface microlayer (SML) biome comprises the top 1000 micrometers of the marine surface waters occurring offshore, away from a continental shelf. 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This biome extends from the surface of the ocean to a depth of ca. 200-250m. Throughout the zone the light field tends to be asymmetrical vertically, so that the direction and elevation of the sun can still be detected. 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Few species were originally considered to feed directly on seagrass leaves (partly because of their low nutritional content), but scientific reviews and improved working methods have shown that seagrass herbivory is a highly important link in the food chain, with hundreds of species feeding on seagrasses worldwide, including green turtles, dugongs, manatees, fish, geese, swans, sea urchins and crabs.\" https://en.wikipedia.org/wiki/Seagrass 2016-01-18" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "seagrass bed" }, { "pred" : "hasExactSynonym", "val" : "seagrass meadow" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-16T12:12:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000060", "lbl" : "particulate environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is composed primarily of particles." }, "subsets" : [ "\"envoAtmo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "particulate matter" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Do not oversimplify this branch with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000061", "lbl" : "marine wind mixed layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "The upper part of the marine water column with generally uniform properties resulting from wind-driven mixing.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088" ] }, "subsets" : [ "\"envoMarine\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epipelagic mixed layer" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-16T12:16:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000062", "lbl" : "marine benthic storm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Benthic storms are strong benthic (near bottom) currents transporting sediment, created by the input of energy (largely kinetic) to the seabed. In regions with high mesoscale eddy activity, benthic storms are frequent and can create isohaline and isothermal conditions extending as much as 1000m above the seafloor.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-16T12:16:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000063", "lbl" : "planktonic material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of planktonic material is a portion of environmental material primarily composed of plankton." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See Issue #251. 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This condition is generally found in areas that have restricted water exchange. In most cases, oxygen is prevented from reaching the deeper levels by a physical barrier (sill) as well as by a pronounced density stratification. 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Marine mesoscale eddies are between about 10 and 500 km in diameter, and persist for periods of days to months. They may be formed when an ocean current develops an instability. 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Currents flowing over shoaling topography such as seamounts are accelerated and destabilised, resulting in Taylor columns. Eddies and internal waves are generated downstream of the topological feature and may extend 1000 m or so above them. 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sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment characterised by an average particle diameter between 62.5 micrometers and 2 mm.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particle_size" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T01:58:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000119", "lbl" : "silty sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment characterised by an average particle diameter between 3.9 and 62.5 micrometers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particle_size" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T01:58:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000120", "lbl" : "clay sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment characterised by an average particle diameter between 1 and 3.9 micrometers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particle_size" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T01:58:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000121", "lbl" : "colloidal sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment characterised by an average particle diameter below 1 micrometer.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particle_size" ] }, "comments" : [ "Note that by the particle-size-based definition used here, colloidal sediment need not actually be a colloid. If that is the case, please use \"suspended colloidal sediment\"." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T01:58:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000122", "lbl" : "marine hydrothermal vent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine hydrothermal vent is a marine benthic feature where heat generated due to tectonic activity, either at divergent plate boundaries or convergent ocean plates where back-arc spreading occurs, is released or 'vented' to the surface. The resultant high temperature water jets are laden with dissolved metals and minerals.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T02:13:33Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000123", "lbl" : "marine sponge reef biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine sponge reef biome comprises marine reefs primarily built by marine sponges. The primary frame-building sponges are all members of the order Hexactinosa. They are found only in glacier-scoured troughs of low-angle continental shelf. The seafloor is stable and consists of rock, coarse gravel, and large boulders.", "xrefs" : [ "ORCID:0000-0002-4366-3088", "https://en.wikipedia.org/wiki/Sponge_reef" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T04:43:05Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000124", "lbl" : "marine supra-littoral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The supralittoral zone is the area above the spring high tide line that is regularly splashed, but not submerged by ocean water. Seawater penetrates these elevated areas only during storms with high tides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "supralittoral zone", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, { "pred" : "hasExactSynonym", "val" : "marine supralittoral zone" }, { "pred" : "hasRelatedSynonym", "val" : "splash zone", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, { "pred" : "hasRelatedSynonym", "val" : "spray zone", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, { "pred" : "hasRelatedSynonym", "val" : "supratidal zone", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T09:01:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000125", "lbl" : "marine littoral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine littoral zone is a littoral zone which extends, approximately, from the spray region above the high tide mark to the edge of the coninental shelf.", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T09:01:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000126", "lbl" : "marine sub-littoral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The marine sublittoral zone is part of the marine littoral zone which is permanently covered by seawater. In physical oceanography, the sublittoral zone refers to coastal regions with significant tidal flows and energy dissipation, including non-linear flows, internal waves, river outflows and oceanic fronts. In practice, this typically extends to the edge of the continental shelf, with depths around 200 meters. In marine biology, the sublittoral refers to the areas where sunlight reaches the ocean floor, that is, where the water is never so deep as to take it out of the photic zone.", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sublittoral zone" }, { "pred" : "hasExactSynonym", "val" : "marine sublittoral zone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-17T09:01:45Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000127", "lbl" : "marine cold seep biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine benthic biome which is determined by a cold seep.", "xrefs" : [ "https://orcid.org/0000-0002-4366-3088", "https://en.wikipedia.org/wiki/Cold_seep" ] }, "comments" : [ "The marine cold seep biome comprises regions of the marine benthic biome where seepage of methane, hydrogen sulphide, hydrocarbon rich fluids and other fluids occurs." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-19T08:33:56Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000128", "lbl" : "dilution basin mediterranean sea biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The dilution basin mediterranean sea biome comprises expressions of the mediterranean sea biome with lower salinity than the surrounding ocean due to freshwater gains such as rainfall and rivers. Water exchange consists of outflow of the fresher mediterranean water in the upper layer and inflow of the saltier oceanic water in the lower layer of the channel. Renewal of deep water may not be sufficient to supply oxygen to the bottom.", "xrefs" : [ "ORCID:0000-0002-4366-3088", "https://en.wikipedia.org/wiki/Mediterranean_sea" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-19T09:32:59Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000129", "lbl" : "marine hydrothermal vent chimney", "type" : "CLASS", "meta" : { "definition" : { "val" : "A column of solid material which has been progressively deposited around a hydrothermal vent." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:23:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000130", "lbl" : "marine hydrothermal plume", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine hydrothermal vent plume, part of a marine hydrothermal vent, is a high temperature water jet laden with dissolved metals and minerals that is driven by heat generated due to tectonic activity below the vent.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:23:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000131", "lbl" : "mesophilic sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment characterised by a temperature of 15-45 degrees Celsius and high-to-low oxygenation. Often impacted by hydrothermal fluid flows.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T07:15:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000132", "lbl" : "thermophilic sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment characterised by a temperature of 45-75 degrees Celsius and low to no oxygen content. Often impacted by hydrothermal fluid flows.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T07:18:16Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000133", "lbl" : "hyperthermophilic sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment characterised by a temperature of 80-125 degrees Celsius and no oxygen content. Often impacted by hydrothermal fluid flows.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T07:18:16Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000134", "lbl" : "hydrothermal fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "High temperature water ejected from hydrothermal vents and laden with dissolved metals and minerals as a result of percolation through crustal rocks.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T08:19:19Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000135", "lbl" : "nitrate-reducing sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment hosting and characterised by active nitrate reducing microbial communities.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T08:33:33Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000136", "lbl" : "drop stone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of rock which fell vertically through the water column into finer-grained water-deposited sedimentary rocks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dropstone" ] }, "comments" : [ "Drop stones range in size from small pebbles to boulders." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dropstone", "xrefs" : [ "https://en.wikipedia.org/wiki/Dropstone" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:25:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000137", "lbl" : "organic matter fall", "type" : "CLASS", "meta" : { "definition" : { "val" : "An accumulation of organic matter that has fallen to the bottom of a body of water.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:25:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000138", "lbl" : "plant matter fall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A accumulation of plant matter that has fallen to the bottom of a body of water.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:26:07Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000139", "lbl" : "animal carcass fall", "type" : "CLASS", "meta" : { "definition" : { "val" : "The carcass of an animal that has fallen to the bottom of a body of water.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:26:07Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000140", "lbl" : "whale fall", "type" : "CLASS", "meta" : { "definition" : { "val" : "Whale fall is the term used for a whale carcass that has fallen to the ocean floor. When a whale dies in shallow water, its carcass is typically devoured by scavengers over a relatively short period of time: within several months. However, in deeper water (depths of 2,000 m/6,600 ft or greater), fewer scavenger species exist, and the carcass can provide sustenance for a complex localized ecosystem over periods of decades.", "xrefs" : [ "https://en.wikipedia.org/wiki/Whale_fall" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:26:13Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000141", "lbl" : "seal fall", "type" : "CLASS", "meta" : { "definition" : { "val" : "Seal fall is the term used for a seal carcass that has fallen to the ocean floor.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:26:44Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000142", "lbl" : "wood fall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wood fall describes an accumulation of woody plant material that has fallen to the ocean floor.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-20T06:27:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000143", "lbl" : "marine reef", "type" : "CLASS", "meta" : { "definition" : { "val" : "A reef which is located in a marine water 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"definition" : { "val" : "A grassland ecosystem in which dominant ecological communities have reached their climax successional state." }, "xrefs" : [ { "val" : "SPIRE:Savannah_or_grassland" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:26:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000178", "lbl" : "savanna biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A woodland biome which has seasonal water availability and includes trees spaced sufficiently far apart to allow an unbroken layer of grass, sedge (Cyperaceae) or rush (Juncaceae) communities to live." }, "xrefs" : [ { "val" : "SPIRE:Savannah_or_grassland" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:26:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000179", "lbl" : "desert biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A desert ecosystem which is undergoing climactic ecological succession." }, "subsets" : [ "\"wwfBiome\"" ], "xrefs" : [ { "val" : "SPIRE:Desert_or_dune" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:26:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000180", "lbl" : "tundra biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tundra ecosystem which is undergoing climactic ecological succession." }, "subsets" : [ "\"envoPolar\"", "\"wwfBiome\"" ], "xrefs" : [ { "val" : "SPIRE:Tundra" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:26:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000181", "lbl" : "mangrove biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mangrove biome is a terrestrial biome which includes, across its spatial extent, mangrove plants (Rhizophoraceae). 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The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:28:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000183", "lbl" : "tropical desert biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tropical desert biome is a desert biome which has communities adapted to temperatures above a monthly average of 18 degrees Celsius, high daily temperature ranges of approximately 20 degrees Celsius, very high insolation due to inhibited cloud formation, and very low precipitation. Tropical desert biomes located near coasts with cold upwellings may have cooler temperatures and reduced insolution due to fog.", "xrefs" : [ "WWW:http://www.earthonlinemedia.com/ebooks/tpe_3e/title_page.html" ] }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:28:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000184", "lbl" : "subtropical desert biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subtropical desert biome is a desert biome which has communities adapted to temperatures above a monthly average of 18 degrees Celsius, high daily temperature ranges of approximately 20 degrees Celsius, high insolation (but lower than that of a tropical desert biome), inhibited cloud formation, and very low precipitation. 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The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:28:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000185", "lbl" : "montane desert biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A montane desert biome is a desert biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions." }, "comments" : [ "Preliminary definition." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:28:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000186", "lbl" : "polar desert biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A polar desert biome is a desert biome which is subject to low levels of insolation, annual precipitation less than 250 millimeters, and a mean temperature less than 10 degrees Celsius during its warmest month. 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The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:28:51Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000188", "lbl" : "tropical savanna biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A savanna biome which is subject to tropical climate patterns." }, "comments" : [ "Preliminary definition. 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The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "prairie biome" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:28:51Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000190", "lbl" : "flooded savanna biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flooded savanna biome is a savanna biome which has very wet to saturated soil moisture content.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flooded_grasslands_and_savannas" ] }, "subsets" : [ "\"wwfBiome\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "swamp" }, { "pred" : "hasRelatedSynonym", "val" : "marsh" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:28:51Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000191", "lbl" : "subtropical grassland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subtropical grassland in which dominant ecological communities have reached their climax successional state." }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:29:48Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000192", "lbl" : "tropical grassland biome", "type" : "CLASS", "meta" : { "comments" : [ "Preliminary definition. 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"Preliminary definition." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:31:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000197", "lbl" : "broadleaf forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A broadleaf forest ecosystem which is undergoing climactic ecological succession." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:31:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000198", "lbl" : "mixed forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mixed 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"http://purl.obolibrary.org/obo/ENVO_01000202", "lbl" : "temperate broadleaf forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A broadleaf forest which is subject to temperate climate patterns." }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:32:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000203", "lbl" : "environmental condition", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.", "xrefs" : [ "DOI:10.1186/2041-1480-4-43" ] }, "comments" : [ "A condition defines a restricted range of a given quality or combination of qualities. If an environment class, E, has_condition C, then all qualities listed in C are restricted to the ranges defined in C in E. This is not intended as a logical conditional." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000121" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:35:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000204", "lbl" : "tropical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tropical condition is an environmental condition in which an environmental system receives high yearly solar irradiance per unit area and, on Earth, the Sun reaches a subsolar point at least once during the solar year. This results in a hot and moist year-round climate at low elevations, which have a monthly average temperature above 18 degrees Celsius.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tropical" ] }, "xrefs" : [ { "val" : "EcoLexicon:the_tropics" }, { "val" : "SPIRE:Tropical" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:36:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000205", "lbl" : "subtropical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subtropical condition is an environmental condition in which an envrionmental system receives more solar irradiance than those with temperate conditions, but less than those with tropical conditions. At low elevations, this typically results in eight months of the year having average temperatures greater than or equal to 10 degrees Celsius with the coldest monthly temperature averaging between 2 and 13 degrees Celsius." }, "comments" : [ "As with most other climatic zones and conditions, multiple classification schemes have somehat different definitions and criteria. To quote from https://en.wikipedia.org/wiki/ \"Several methods have been used to define the subtropical climate. In the Trewartha climate classification, a subtropical region should have at least eight months with a mean temperature of 10 °C (50.0 °F) or above. German climatologists Carl Troll and Karlheinz Paffen defined Warm temperate zones as plain and hilly lands having an average temperature of the coldest month between 2 °C (35.6 °F) and 13 °C (55.4 °F) in the Northern Hemisphere and between 6 °C (42.8 °F) and 13 °C (55.4 °F) in the Southern Hemisphere, excluding oceanic and continental climates. According to the Troll-Paffen climate classification, there generally exists one large subtropical zone named the warm-temperate subtropical zone,[4] which is subdivided into seven smaller areas.[5]\n\nAccording to the E. Neef climate classification, the subtropical zone is divided into two parts: Rainy winters of the west sides and Eastern subtropical climate.[6] According to the Wilhelm Lauer & Peter Frankenberg climate classification, the subtropical zone is divided into three parts: high-continental, continental, and maritime.[7] According to the Siegmund/Frankenberg climate classification, subtropical is one of six climate zones in the world.[8]\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:36:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000206", "lbl" : "temperate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperate condition is an environmental condition in which an environmental system receives less solar irradiance than those with subpolar conditions, but greater than those with subtropical conditions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Temperate_climate" ] }, "comments" : [ "This class' definition is less satisfactory than the other latitudinal conditoins." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tepid climate", "xrefs" : [ "https://en.wikipedia.org/wiki/Temperate_climate" ] } ], "xrefs" : [ { "val" : "SPIRE:Temperate" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:36:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000207", "lbl" : "mediterranean", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mediterranean condition is a subtropical condition in which hot dry summers and winters with moderate to high rainfall.", "xrefs" : [ "https://en.wikipedia.org/wiki/Subtropics" ] }, "comments" : [ "These regions are under the constant influence of the subtropical ridge." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:36:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000208", "lbl" : "mediterranean woodland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subtropical woodland biome which includes communities adapted to hot to warm, dry summers, mild to cold, rainy winters, and the influence of large, usually marine, bodies of water." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T15:01:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000209", "lbl" : "subtropical coniferous forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A coniferous forest biome which is subject to subtropical climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:39:14Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000210", "lbl" : "tropical coniferous forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A coniferous forest biome which is subject to tropical climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:39:14Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000211", "lbl" : "temperate coniferous forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A coniferous forest biome which is subject to temperate climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:39:14Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000212", "lbl" : "temperate mixed forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperate mixed forest in which dominant ecological communities have reached their climax successional state." }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:39:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000213", "lbl" : "subtropical shrubland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shrubland biome which is subject to subtropical climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:40:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000214", "lbl" : "tropical shrubland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shrubland biome which is subject to tropical climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:40:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000215", "lbl" : "temperate shrubland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shrubland biome which is subject to temperate climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "prairie biome" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:40:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000217", "lbl" : "mediterranean shrubland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mediterranean shrubland biome is a subtropical shrubland biome which includes communities adapted to hot to warm, dry summers, mild to cold, rainy winters, and the influence of large, usually marine, bodies of water." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:40:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000218", "lbl" : "xeric shrubland biome", "type" : "CLASS", "meta" : { "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:40:32Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000219", "lbl" : "anthropogenic terrestrial biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.", "xrefs" : [ "http://www.eoearth.org/view/article/150128/" ] }, "comments" : [ "Preliminary definition." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anthrome" }, { "pred" : "hasExactSynonym", "val" : "human biome" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T14:45:22Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000220", "lbl" : "tropical woodland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A woodland biome which is subject to tropical climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T15:01:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000221", "lbl" : "temperate woodland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A woodland biome which is subject to temperate climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T15:01:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000222", "lbl" : "subtropical woodland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A woodland biome which is subject to subtropical climate patterns." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T15:01:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000223", "lbl" : "montane savanna biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A montane savanna biome is a savanna biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions." }, "comments" : [ "Preliminary definition." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-07T16:50:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000224", "lbl" : "mediterranean grassland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subtropical grassland biome which includes communities adapted to hot to warm, dry summers, mild to cold, rainy winters, and the influence of large, usually marine, bodies of water." }, "comments" : [ "Preliminary definition. The semantics and definitions of \"mediterranean\", \"subtropical\", \"tropical\", \"temperate\", \"polar\", and similar climate types may be transferred to an \"environmental condition\" class once the semantics of this class have been established." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-19T11:42:48Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000225", "lbl" : "subtropical dry broadleaf forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subtropical dry broadleaf forest in which dominant ecological communities have reached their climax successional state." }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-24T12:04:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000226", "lbl" : "subtropical moist broadleaf forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subtropical moist broadleaf forest in which dominant ecological communities have reached their climax successional state." }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-24T12:04:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000227", "lbl" : "tropical dry broadleaf forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tropical dry broadleaf forest in which dominant ecological communities have reached their climax successional state." }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-24T12:05:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000228", "lbl" : "tropical moist broadleaf forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tropical moist broadleaf forest in which dominant ecological communities have reached their climax successional state." }, "subsets" : [ "\"wwfBiome\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rainforest biome" } ], "xrefs" : [ { "val" : "SPIRE:Rainforest" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-24T12:05:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000229", "lbl" : "mediterranean savanna biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A savanna biome which is subject to mediterranean climate patterns." }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-24T12:20:42Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000230", "lbl" : "arid", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental condition in which annual precipitation is less than half of annual potential evapotranspiration." }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "EcoLexicon:aridity" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-24T13:28:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000231", "lbl" : "lava", "type" : "CLASS", "meta" : { "definition" : { "val" : "Lava is a mixture of molten or semi-molten rock, volatiles, and solids which has extruded beyond a planetary crust.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava" ] }, "comments" : [ "Some use 'lava' to refer to rock that is formed when lava cools. This is not the intended meaning of this class. See 'igneous rock' or similar." ], "xrefs" : [ { "val" : "EcoLexicon:lava" }, { "val" : "SWEETRealm:Lava" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "PLB" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-05-05T16:52:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000232", "lbl" : "felsic lava", "type" : "CLASS", "meta" : { "definition" : { "val" : "Felsic lava is lava which is high in silica (> 69 percent by weight), aluminium, potassium, sodium, and calcium, forming a polymerized liquid rich in feldspar and quartz. Felsic lava has a higher viscosity than other magma types. Felsic magmas can erupt at temperatures as low as 650 to 750 °C. Unusually hot (>950 °C) rhyolite lavas, however, may flow for distances of many tens of kilometres", "xrefs" : [ "https://en.wikipedia.org/wiki/Igneous_rock", "https://en.wikipedia.org/wiki/Lava" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "silicic lava", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "PLB" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-05-05T16:56:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000233", "lbl" : "intermediate lava", "type" : "CLASS", "meta" : { "definition" : { "val" : "Intermediate lava is lava which, relative to felsic lava, is lower in aluminium and silica (between 52 and 63 percent by weight), and usually somewhat richer in magnesium and iron. The temperature of intermediate lava ranges from 750 to 950 degrees Celsius, destroying polymerized bonds and promoting more fluid behaviour relative to felsic lavas and also a greater tendency to form phenocrysts. Higher iron and magnesium tends to manifest as a darker groundmass, and also occasionally amphibole or pyroxene phenocrysts.", "xrefs" : [ "https://en.wikipedia.org/wiki/Intermediate_composition" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "andesitic lava", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "PLB" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-05-05T16:56:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000234", "lbl" : "mafic lava", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mafic lava is lava which, relative to other lava types other than ultramafic lava, has a high ferromagnesian content and low aluminium and silica content, with silca making up between 45 and 52 percent of its weight.", "xrefs" : [ "https://en.wikipedia.org/wiki/Igneous_rock", "https://en.wikipedia.org/wiki/Lava" ] }, "comments" : [ "Mafic lava generally erupts at temperatures in excess of 950 degrees Celsius. The high temperature and low polymerisation in mafic lava favors low viscosity and chemical diffusion, promoting the formation of large, well-formed phenocrysts." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "basaltic lava", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-05-05T16:56:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000235", "lbl" : "ultramafic lava", "type" : "CLASS", "meta" : { "definition" : { "val" : "Lava which, relative to other lava types, has very high magnesium oxide content and less than 45 percent silica by weight.", "xrefs" : [ "https://en.wikipedia.org/wiki/Igneous_rock", "https://en.wikipedia.org/wiki/Lava" ] }, "comments" : [ "Ultramafic lava generally erupts at temperatures of 1600 degrees Celsius. Due to its high temperature and composition, the viscosity of ultramafic lava is very low." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-05-05T16:56:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000236", "lbl" : "basalt", "type" : "CLASS", "meta" : { "definition" : { "val" : "Basalt is a volcanic rock which is formed by the rapid cooling of basaltic lava.", "xrefs" : [ "https://en.wikipedia.org/wiki/Basalt" ] }, "xrefs" : [ { "val" : "EcoLexicon:basalt" }, { "val" : "SWEETRealm:Basalt" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "PLB" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-05-05T17:07:15Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000237", "lbl" : "coastal scrubland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A coastal scrubland is a scrubland which is part of a coast.", "xrefs" : [ "https://en.wikipedia.org/wiki/California_coastal_sage_and_chaparral_ecoregion", "https://en.wikipedia.org/wiki/Coastal_sage_scrub" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "coastal chaparral", "xrefs" : [ "https://en.wikipedia.org/wiki/California_chaparral_and_woodlands" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-05-06T09:47:07Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000238", "lbl" : "polar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A polar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area, resulting in colder climatic conditions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Polar_climate" ] }, "comments" : [ "On Earth, polar conditions are such that every month has average temperature lower than 10 degrees Celsius. Note that this class refers to a climatic rather than a positional condition." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "frigid", "xrefs" : [ "https://en.wikipedia.org/wiki/Polar_climate" ] } ], "xrefs" : [ { "val" : "SPIRE:Polar" }, { "val" : "SWEETRealm:Polarization" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-05-08T07:49:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000239", "lbl" : "oak woodland", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oak woodland is a woodland which has a tree community primarily composed of oak trees.", "xrefs" : [ "ORCID:0000-0001-8743-9574" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-04T22:33:52Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000240", "lbl" : "conifer woodland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A conifer woodland is a woodland which has a tree community primarily composed of coniferous trees, from the Division Pinophyta, also known as Coniferophyta or Coniferae.", "xrefs" : [ "ORCID:0000-0001-8743-9574", "https://en.wikipedia.org/wiki/Conifer" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-06T14:39:17Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000241", "lbl" : "juniper woodland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A juniper woodland is a woodland which has a tree community primarily composed of trees of the genus Juniperus.", "xrefs" : [ "ORCID:0000-0001-8743-9574", "https://en.wikipedia.org/wiki/Juniper" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "PLB" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-06T14:44:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000242", "lbl" : "desert scrubland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A scrubland which is located in a desert.", "xrefs" : [ "ORCID:0000-0001-8743-9574" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "desert scrub", "xrefs" : [ "ORCID:0000-0001-8743-9574" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-06T15:02:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000243", "lbl" : "boulder", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of rock with a grain size above 300 millimetres in diameter.", "xrefs" : [ "ORCID:0000-0001-8743-9574", "https://en.wikipedia.org/wiki/Boulder" ] }, "xrefs" : [ { "val" : "EcoLexicon:boulder" }, { "val" : "SWEETRealm:Boulder" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "PLB" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-06T15:10:50Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000244", "lbl" : "pinyon juniper woodland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pinyon juniper woodland is a conifer woodland which has a tree community primarily composed of trees of the subsection Cembroides of the genus Pinus and the genus Juniperus.", "xrefs" : [ "ORCID:0000-0001-8743-9574", "https://en.wikipedia.org/wiki/Juniper", "https://en.wikipedia.org/wiki/Pinyon_pine" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "PLB" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-06T15:22:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000245", "lbl" : "cropland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cropland ecosystem which is undergoing climactic ecological succession.", "xrefs" : [ "http://dx.doi.org/10.1111/j.1466-8238.2010.00540.x", "http://dx.doi.org/10.1890/070062" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-14T11:45:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000246", "lbl" : "village biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity.", "xrefs" : [ "DOI:10.1111/j.1466-8238.2010.00540.x", "DOI:10.1890/070062" ] }, "comments" : [ "Villages are also described as agricultural settlements with greater than 100 persons per square kilometre; however, no upper limit is defined." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-14T11:45:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000247", "lbl" : "rangeland biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rangeland biome is an anthropogenic terrestrial biome which is primarily used for the rearing and grazing of livestock.", "xrefs" : [ "DOI:10.1111/j.1466-8238.2010.00540.x", "DOI:10.1890/070062" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-14T11:45:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000248", "lbl" : "dense settlement biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use.", "xrefs" : [ "DOI:10.1111/j.1466-8238.2010.00540.x", "DOI:10.1890/070062" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-14T11:45:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000249", "lbl" : "urban biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "An urban biome is a dense settlement biome which has been urbanised.", "xrefs" : [ "DOI:10.1111/j.1466-8238.2010.00540.x", "DOI:10.1890/070062" ] }, "xrefs" : [ { "val" : "SPIRE:Urban" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-06-14T11:45:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000250", "lbl" : "subpolar coniferous forest biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A coniferous forest biome which includes communities adapted to subpolar conditions." }, "subsets" : [ "\"wwfBiome\"" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "boreal forest" }, { "pred" : "hasNarrowSynonym", "val" : "taiga" } ], "xrefs" : [ { "val" : "EcoLexicon:taiga" }, { "val" : "LTER:72" }, { "val" : "SPIRE:Taiga" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-04T06:41:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000251", "lbl" : "subpolar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subpolar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area and is surrounded by large land masses. This results in very cold winters with temperatures potentially falling to around -40 degrees Celsius and summers which last no more than 3 months of the year with a 24-hour average temperature of at least 10 degrees Celsius.", "xrefs" : [ "https://en.wikipedia.org/wiki/Subarctic_climate" ] }, "comments" : [ "Note that this class refers to a climatic rather than a positional condition." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "boreal", "xrefs" : [ "https://en.wikipedia.org/wiki/Subarctic_climate" ] }, { "pred" : "hasExactSynonym", "val" : "subarctic", "xrefs" : [ "https://en.wikipedia.org/wiki/Subarctic_climate" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-04T07:08:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000252", "lbl" : "freshwater lake biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is determined by a freshwater lake." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-19T11:11:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000253", "lbl" : "freshwater river biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater biome which is determined by a freshwater river." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-19T11:11:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000254", "lbl" : "environmental system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A system which has the disposition to environ one or more material entities.", "xrefs" : [ "DOI:10.1186/2041-1480-4-43" ] }, "comments" : [ "In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class \"system\". The relation \"environed_by\" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "environment" } ], "xrefs" : [ { "val" : "EcoLexicon:environment" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-23T16:04:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000255", "lbl" : "mineral deposit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral deposit is a physiographic feature which has unusually high concentrations of one or more minerals.", "xrefs" : [ "ORCID:0000-0002-4366-3088", "URL:http://www.britannica.com/EBchecked/topic/383726/mineral-deposit?anchor=ref624175" ] }, "comments" : [ "Note that the definition of the term mineral is debatable; however, a mineral generally must be naturally occuring, stable at room temperature, representable by a chemical formula (unlike rocks, which may include a wide variety of components), are usually formed by geophysical processes (i.e. are abiogenic), and have an ordered atomic arrangement." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mineral ore deposit" }, { "pred" : "hasNarrowSynonym", "val" : "ore deposit", "xrefs" : [ "URL:http://www.britannica.com/EBchecked/topic/383726/mineral-deposit?anchor=ref624175" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-05T12:23:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000256", "lbl" : "mineral material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mineral" ] }, "xrefs" : [ { "val" : "LTER:341" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Look for \"mineral\" in a chemical or geochemical ontology to formalise the composed primarily of link.\nFrom https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-05T12:37:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000257", "lbl" : "white smoker", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydrothermal vent found on the ocean floor which emits lighter-hued minerals, such as those containing barium, calcium and silicon. These alkaline hydrothermal vents also continuously generate acetyl thioesters, providing both the starting point for more complex organic molecules and the energy needed to produce them.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hydrothermal_vent" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-06T19:57:22Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000258", "lbl" : "fluid cline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluid front which is 1) thin in comparison to the fluid mass it is a part of and 2) across which a property of that fluid mass varies greatly over short vertical distance, relative to variation across the entire fluid mass.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cline_(hydrology)" ] }, "comments" : [ "A similar term exists in linguistics and mathematics. An ecocline, or biological cline, is a related concept; however, may be better placed as a child of a class like \"ecotone\". Further, some definitions of \"layer\" require a layer's constiuent materials to have consistent properties, thus \"cline\" would not qualify as a subclass. The term \"gradient\" has been proposed as a more suitable superclass. Discussion in Issue #286)" ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cline" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-06T20:10:13Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000259", "lbl" : "pycnocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cline across which the density of a fluid changes rapidly.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pycnocline" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "stable density gradient", "xrefs" : [ "https://en.wikipedia.org/wiki/Pycnocline" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-06T20:16:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000260", "lbl" : "nutricline within a water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nutricline which is part of a water body.", "xrefs" : [ "CMECS:1345", "https://en.wikipedia.org/wiki/Mixed_layer" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "nutrient gradient" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-06T20:16:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000261", "lbl" : "obsolete lysocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cline within a marine water body where the rate of calcite dissolution changes rapidly with depth. The increase in the rate of calcite dissolution with depth is largely due to the concomitant fall in calcite saturation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lysocline" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:01000079" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-06T20:16:10Z" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000262", "lbl" : "seep", "type" : "CLASS", "meta" : { "definition" : { "val" : "A seep is a spring in which water has filtered through permeable earth to the surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Spring_(hydrology)" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-06T21:13:21Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000263", "lbl" : "cold seep", "type" : "CLASS", "meta" : { "definition" : { "val" : "MERGED DEFINITION:\nTARGET DEFINITION: A cold seep is a seep in which methane and other hydrocarbon-rich fluids rise to the sea floor.\n--------------------\nSOURCE DEFINITION: An area of the ocean floor where hydrogen sulfide, methane and other hydrocarbon-rich fluid seepage occurs. Cold seeps are distinct from hydrothermal vents: the former's emissions are of the same temperature as the surrounding seawater, whereas the latter's emissions are super-heated.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cold_seep" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hydrocarbon seep" }, { "pred" : "hasExactSynonym", "val" : "methane seep" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-06T21:16:39Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000264", "lbl" : "obsolete vapour", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vapour is an environmental material in the gas phase at a temperature lower than its critical point.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vapor" ] }, "comments" : [ "Obsoleted. Not really a material. Use PATO's \"quality of a gas\" on a material to express vapour forms." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vapor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T07:55:56Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000265", "lbl" : "hydrothermal seep", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydrothermal seep is a seep in which diffuse flow of geothermally heated fluids with high methane concentrations. This seep has been proposed as an intermediate between cold seeps and hydrothermal vents.", "xrefs" : [ "DOI:10.1098/rspb.2012.0205" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "hot seep" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-06T21:19:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000266", "lbl" : "water vapour", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water vapour is a vapour which is the gas phase of water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_vapor" ] }, "comments" : [ "Perhaps a better relation between water vapour and water can be found in or added to RO?" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "aqueous vapor", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_vapor" ] }, { "pred" : "hasExactSynonym", "val" : "aqueous vapour", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_vapor" ] }, { "pred" : "hasExactSynonym", "val" : "water vapor", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_vapor" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T07:58:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000267", "lbl" : "atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Atmosphere", "https://en.wikipedia.org/wiki/Physical_geography" ] }, "xrefs" : [ { "val" : "LTER:48" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T08:14:50Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000268", "lbl" : "atmospheric water vapour", "type" : "CLASS", "meta" : { "definition" : { "val" : "Atmospheric water vapour is water vapour that is part of an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_vapor" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "atmospheric water vapor", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_vapor" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T08:22:07Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000269", "lbl" : "siltstone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sedimentary rock which is composed mainly of silt. This rock has a grainsize in the silt range, finer than sandstone and coarser than claystones.", "xrefs" : [ "https://en.wikipedia.org/wiki/Siltstone" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-12T14:51:19Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000270", "lbl" : "claystone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A clastic sedimentary rock which is composed primarily of clay sized particles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Claystone" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-12T14:51:19Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000271", "lbl" : "clastic sedimentary rock", "type" : "CLASS", "meta" : { "definition" : { "val" : "Clastic sedimentary rocks are sedimentary rocks that are composed of silicate minerals and rock fragments that were transported by moving fluids. Clastic rocks are composed largely of quartz, feldspar, rock (lithic) fragments, clay minerals, and mica; numerous other minerals may be present as accessories and may be important locally.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sedimentary_rock#Clastic_sedimentary_rocks" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-12T14:51:19Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000272", "lbl" : "mudstone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mudstone is a clastic sedimentary rock which contains a mixture of at least one third of silt- and one third of clay-sized particles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mudrock#Nomenclature", "https://en.wikipedia.org/wiki/Mudstone" ] }, "comments" : [ "There is debate on the usage of mudstone and mudrock, and some ambiguity is to be expected. https://en.wikipedia.org/wiki/ The terminology of \"mudstone\" is not to be confused with the Dunham classification scheme for limestones. In Dunham's classification, a mudstone is any limestone containing less than ten percent carbonate grains. Note, a siliciclastic mudstone does not deal with carbonate grains. Friedman, Sanders, and Kopaska-Merkel (1992) suggest the use of \"lime mudstone\" to avoid confusion with siliciclastic rocks." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-12T14:51:19Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000273", "lbl" : "lime mudstone", "type" : "CLASS", "meta" : { "definition" : { "val" : "Lime mudstone is a limestone which is primarily composed of either clay-size or both silt-size and clay-size detrital (transported) carbonate grains.", "xrefs" : [ "https://en.wikipedia.org/wiki/Calcilutite", "https://en.wikipedia.org/wiki/Mudstone" ] }, "comments" : [ "https://en.wikipedia.org/wiki/ The terminology of \"mudstone\" is not to be confused with the Dunham classification scheme for limestones. In Dunham's classification, a mudstone is any limestone containing less than ten percent carbonate grains. Note, a siliciclastic mudstone does not deal with carbonate grains. Friedman, Sanders, and Kopaska-Merkel (1992) suggest the use of \"lime mudstone\" to avoid confusion with siliciclastic rocks." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "calcilutite", "xrefs" : [ "https://en.wikipedia.org/wiki/Calcilutite" ] }, { "pred" : "hasExactSynonym", "val" : "cementstone", "xrefs" : [ "https://en.wikipedia.org/wiki/Calcilutite" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-12T14:51:19Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000274", "lbl" : "slate", "type" : "CLASS", "meta" : { "definition" : { "val" : "Slate is a metamorphic rock which is fine-grained, foliated, homogeneous, Slates are derived from clastic sedimentary rocks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Slate" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-12T14:51:19Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000275", "lbl" : "structural basin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural basin is a geological depression formed by tectonic warping of previously flat lying rock strata.", "xrefs" : [ "https://en.wikipedia.org/wiki/Structural_basin" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-12T16:30:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000276", "lbl" : "ecoregion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.", "xrefs" : [ "DOI:10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2", "URL:http://worldwildlife.org/biomes" ] }, "comments" : [ "Unlike biomes, ecoregions are geographically defined entities. ENVO's sister project, GAZ, contains terms for instances of ecoregions (e.g. Beringia lowland tundra). Requests for new terms should be directed to GAZ. ENVO will only contain this top-level class. The class' definition is preliminary and will be aligned to BFO." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-12T17:21:09Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000277", "lbl" : "water ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ice which is formed from water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice" ] }, "comments" : [ "Water ice can appear transparent or opaque bluish-white color, depending on the presence of impurities or air inclusions. The addition of other materials such as soil may further alter its appearance.\n\nWhen speaking about ice on Earth, usually water ice is meant - the solid, crystalline form of water found in the atmosphere as snow crystals, hail, ice pellets, etc., and on the earth's surface in forms such as hoarfrost, rime, glaze, sea ice, glacier ice, ground ice, frazil, anchor ice, etc.\n\nThis form of water is, strictly speaking, called ice Ih, the Roman numeral I distinguishing it from more than a dozen other phases and the letter h distinguishing it from the metastable cubic phase ice Ic. Ice Ih is the only one of the several known phases of water ice that is stable at commonly occurring temperatures and pressures. (Some of the other forms have very unusual properties, ice VII, for example, being stable only at pressures above 22 400 kg/cm^2, but then existing at temperatures up to about 100C.)\n\nIt has an open structure with a specific gravity of 0.9166 which is slightly less than water; because the water molecules bond to their neighbors covalently only in four directions; it therefore floats on higher density water, where broken molecular bonds permit closer packing. All commonly occurring forms of ice are crystalline, although large single crystals are relatively rare except in glaciers. The ice crystal lattice possesses hexagonal symmetry that manifests itself in the gross forms of such single crystals as are sometimes found in snow. At an air pressure of one atmosphere, ice melts at 0 C by definition of the Celsius temperature scale. (Strictly speaking the equilibrium point among water, ice, and vapor occurs at +0.01C, the triple point.) On the other hand, ice does not invariably form in liquid water cooled below this temperature; it has a tendency to supercool, more so in the absence of ice nuclei.\n\nIn permafrost regions, ice may occupy voids in soils and rocks and may develop in a variety of forms. Ice may be colourless to pale blue or greenish-blue. It may appear white due to included gas bubbles; in exposures, ground ice may also appear black.\n\nIn nature ice is formed either by: (a) the freezing of water, (b) the condensation of atmospheric water vapour direct into ice crystals, (c) the compaction of snow with or without the motion of a glacier, or (d) the impregnation of porous snow masses with water which subsequently freeze." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ice", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/4131" ] } ], "xrefs" : [ { "val" : "LTER:262" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-13T12:01:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000278", "lbl" : "pingo scar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depression caused by the collapse of a pingo.", "xrefs" : [ "DOI:10.1016/0033-5894(76)90039-9" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-13T12:15:55Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000279", "lbl" : "ice lens", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which is formed when moisture, diffused within soil or rock, accumulates and freezes in a localized zone, wedging soil or rock apart.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_Lens" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/OMO_0003004", "pred" : "hasExactSynonym", "val" : "ice lenses" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-13T12:20:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000280", "lbl" : "ecozone", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.", "xrefs" : [ "https://en.wikipedia.org/wiki/ecozone" ] }, "comments" : [ "ENVO contains this top-level class, but all instances will be in GAZ. The definition is preliminary and will be aligned to BFO.\nhttps://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of botany or zoogeographic regions of zoology. Ecozones are characterized by the evolutionary history of the organisms they contain. They are distinct from biomes, also known as major habitat types, which are divisions of the Earth's surface based on life form, or the adaptation of plants and animals to climatic, soil, and other conditions. Biomes are characterized by similar climax vegetation. Each ecozone may include a number of different biomes. A tropical moist broadleaf forest in Central America, for example, may be similar to one in New Guinea in its vegetation type and structure, climate, soils, etc., but these forests are inhabited by plants and animals with very different evolutionary histories." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-13T18:32:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000281", "lbl" : "layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity which 1) is spatially continuous, 2) is composed of material of comparable thickness, composition, and physical properties, and 3) is physically distinct from adjacent portions of environmental material.", "xrefs" : [ "https://en.wiktionary.org/wiki/layer" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T16:42:02Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000282", "lbl" : "sedimentary stratum", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid layer which is composed primarily of sedimentary rock or soil.", "xrefs" : [ "https://en.wikipedia.org/wiki/Stratum" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "stratum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T16:49:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000283", "lbl" : "lake layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which is part of a lake." }, "comments" : [ "Note that this class does not contain metalimnion as a subclass. The metaliminon is classified as a thermocline." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T16:57:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000284", "lbl" : "amictic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is permanently covered by ice, does not mix, and exhibit inverse cold water stratification whereby water temperature increases with depth below the ice surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Amictic_lake" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T17:08:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000285", "lbl" : "holomictic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A holomictic lake is a lake which mixes at least once per year. Mixing is caused by a uniform temperature distribution from the upper to lower layers of the lake.", "xrefs" : [ "DOI:10.1139/f83-207", "https://en.wikipedia.org/wiki/Holomictic" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "non-meromictic lake", "xrefs" : [ "DOI:10.1139/f83-207", "https://en.wikipedia.org/wiki/Holomictic" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T17:08:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000286", "lbl" : "dimictic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dimitic lake is a holomictic lake which mixes from top to bottom during two mixing periods each year. Mixing typically occurs during the spring and autumn, when the lake is \"isothermal\" (i.e., at the same temperature from the top to the bottom). At this time the water throughout the lake is about 4°C, and, in the absence of any temperature or density differences, the lake readily mixes from top to bottom. 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"ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T17:08:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000288", "lbl" : "monomictic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A monomictic lake is a holomictic lake which mixes from top to bottom during one mixing period each year.", "xrefs" : [ "DOI:10.1139/f83-207", "https://en.wikipedia.org/wiki/Monomictic" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T17:08:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000289", "lbl" : "cold monomictic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A monomictic lake which is covered by ice throughout much of the year and only mixes when its surface ice melts and the lake lacks thermal stratification.", "xrefs" : [ "https://en.wikipedia.org/wiki/Monomictic" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T17:23:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000290", "lbl" : "warm monomictic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A monomictic lake which does not freeze and is thermally stratified throughout most of the year, only mixing in winter when cooler temperatures ease stratification.", "xrefs" : [ "https://en.wikipedia.org/wiki/Monomictic" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T17:26:42Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000291", "lbl" : "cold polymictic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cold polymictic lake is a polymictic lake which is covered by ice in winter.", "xrefs" : [ "DOI:10.1139/f83-207", "https://en.wikipedia.org/wiki/Polymictic" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T17:31:50Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000292", "lbl" : "warm polymictic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A warm polymictic lake is a polymictic lake which is not covered by ice at any point during the year.", "xrefs" : [ "DOI:10.1139/f83-207", "https://en.wikipedia.org/wiki/Polymictic" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T17:32:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000293", "lbl" : "ice mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of water ice." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "accumulation of ice" }, { "pred" : "hasBroadSynonym", "val" : "ice accumulation" } ], "xrefs" : [ { "val" : "http://sweetontology.net/phenCryo/Accumulation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Class should be populated by inference and asserted subclasses redistributed." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-15T19:49:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000294", "lbl" : "crevice", "type" : "CLASS", "meta" : { "definition" : { "val" : "A deep fissure in rock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fracture" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "crevice", "xrefs" : [ "USGS:SDTS" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-16T00:42:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000295", "lbl" : "marine layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer that is part of a marine water body.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "subsets" : [ "\"envoMarine\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000296", "lbl" : "dry lake bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake bed which is dry. That is, the bed of a dry lake." }, "comments" : [ "Deliberately disjoint with \"lake bed\", which must be covered with water." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-16T12:12:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000297", "lbl" : "freshwater river", "type" : "CLASS", "meta" : { "definition" : { "val" : "A river where fresh water flows.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "comments" : [ "Preliminary definition." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-16T12:56:48Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000298", "lbl" : "continental margin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A slope which is part of the seafloor, descends from the continental crust to the oceanic crust, and comprises the continental shelf, continental slope, and continental rise.", "xrefs" : [ "https://en.wikipedia.org/wiki/Continental_margin" ] }, "comments" : [ "On Earth, continental margins constitute about 28% of the oceanic area." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "EcoLexicon:continental_margin" }, { "val" : "SWEETRealm:ContinentalMargin" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-18T00:04:57Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000299", "lbl" : "Taylor column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A Taylor column is a column of deflected fluid flow which is formed in a perturbed, rotating fluid, is parallel to the axis of rotation, and extends above the obstacle perturbing the fluid in a rigid manner.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088", "https://en.wikipedia.org/wiki/Taylor_column" ] }, "comments" : [ "This is an interesting class. It's not really a column in the sense of a water column, nor is it a current, exactly. It may also occur in any fluid, gaseous or liquid." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-19T11:11:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000300", "lbl" : "atmospheric Taylor column", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric Taylor column is a Taylor column that is formed in the atmosphere. Atmospheric Taylor columns often form above islands resulting in vortex streets in the atmosphere.", "xrefs" : [ "ISBN:978-0-444-82619-0", "ORCID:0000-0002-4366-3088", "https://en.wikipedia.org/wiki/Taylor_column" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "vortex street", "xrefs" : [ "https://en.wikipedia.org/wiki/Kármán_vortex_street" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-19T11:12:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000301", "lbl" : "estuarine water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Brackish water which is part of an estuary.", "xrefs" : [ "https://en.wikipedia.org/wiki/Estuary" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-19T11:30:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000302", "lbl" : "outcrop", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of environmental material which protrudes through a surface layer." }, "comments" : [ "This is kept as a general class. One can specify subclasses by identifying the protruding material (e.g. rock outcroup, mineral outcrop, etc ) and the material(s) the protrusion emerges from. Possible logical definition: A portion of ENVO:environmental material which has_quality PATO:\"protruding out of\" a ENVO:surface layer of an ENVO:environmental material." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-04-24T13:12:49Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000303", "lbl" : "endolithic environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endolithic environment is an environment that exists within solid rock." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000304", "lbl" : "high pressure environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A high pressure environment is an environment in which all material entities are exposed to a high ratio of force per unit area." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000305", "lbl" : "high temperature environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A high temperature environment is an environment in which material entities are exposed to increased levels of heat radiation or which have molecules or atoms moving randomly with increased levels of average kinietic energy." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000306", "lbl" : "freshwater environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquatic environment which is determined by freshwater." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fresh water environment" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Water (non-saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000307", "lbl" : "saline water environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by saline water." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Water (saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000308", "lbl" : "extraterrestrial environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which is located beyond the Earth's exosphere and away from the Earth's core." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This would need an instance of planet (i.e. Earth) to be fully expressed. Note that this is not necessarily outer space, as it can include planetary environments that are not of Earth." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000309", "lbl" : "cold environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which has a lower temperature than some local or global average." }, "comments" : [ "The definition of the deprecated 'cold temperature habitat' class, which this class was derived from, quotes an upper threshold of 15 degrees Celsius for 'coldness'." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000310", "lbl" : "haline environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A haline environment is an environment in which entities are exposed to high concentrations of salt, typically above 2 molar." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000311", "lbl" : "cultivated environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cultivated environment is an environment that has been modified by humans by the preparation of the land, usually for the purposes of growing crops.", "xrefs" : [ "MA:ma" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "cropland", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "CROPLAND", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "agricultural region" }, { "pred" : "hasRelatedSynonym", "val" : "cultivated area", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "cultivated cropland", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "market garden", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "range", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "truck farm", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "truck garden", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:agriculture" }, { "val" : "FTT:1248" }, { "val" : "FTT:54" }, { "val" : "FTT:55" }, { "val" : "FTT:56" }, { "val" : "Geonames:V.CULT" }, { "val" : "LTER:17" }, { "val" : "SPIRE:Agricultural" }, { "val" : "SWEETRealm:Range" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000312", "lbl" : "culturing environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A culturing environment is an environment which is maintained by humans for the purposes of preparing cell, organ, tissue and plant tissue cultures.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cell_culture" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000313", "lbl" : "anthropogenic environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environment is an environmental system which is the product of human activity." }, "comments" : [ "Unsatisfactory definition here. Must consider the threshold that makes an environmental system anthropogenic." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000314", "lbl" : "high osmolarity environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000315", "lbl" : "acidic environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An acidic environment is an environment in which material entities are exposed to a low pH." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000316", "lbl" : "alkaline environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An alkaline environment is an environment in which entities are exposed to high pH, typically greater than a pH of 9." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000317", "lbl" : "aquatic environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment whose dynamics are strongly influenced by water." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000318", "lbl" : "extreme high temperature environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An extreme high temperature environment is a high temperature environment in which entities are exposed to temperatures above 80 degrees Celsius." }, "comments" : [ "The lower threshold, 80 degrees Celsius, is derived from the definition of the obsolete class \"extreme high temperature habitat\" which this class replaces." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000319", "lbl" : "rocky slope", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rocky slope is a slope which has a surface primarily composed of rock." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000320", "lbl" : "marine environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine environment and enviroment which is determined by a marine water body.", "xrefs" : [ "NM:nm" ] }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000321", "lbl" : "sea water environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by seawater." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ocean water environment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000322", "lbl" : "brackish water environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment determined by the presence of brackish water." }, "comments" : [ "This may refer to environments submerged in brackish water or those that are determined by its presence, such as a brackish water pond environment." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000323", "lbl" : "atmospheric boundary layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "The atmospheric boundary layer is the lowest layer of an atmosphere which is strongly influenced by its contact with a planetary surface with strong vertical mixing and in which physical quantities such as flow velocity, temperature, and moisture display rapid fluctuations (turbulence)." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "planetary boundary layer" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000324", "lbl" : "planetary surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary surface is a surface layer where the solid or liquid material of a planet comes into contact with an atmosphere or outer space." }, "comments" : [ "a useful class: this can be used to define sub-terrestrial and sub-marine entities" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000325", "lbl" : "aquatic layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer in a water mass, itself composed primarily of water." }, "comments" : [ "This class will eventually be populated by inference, and its asserted subclasses removed." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000326", "lbl" : "deep chlorophyll maximum layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subsurface layer in a water body, typically an ocean or lake, in which chlorophyll concentrations reach their maximum.", "xrefs" : [ "https://en.wikipedia.org/wiki/Deep_chlorophyll_maximum" ] }, "comments" : [ "The DCM may or may not indicate greater abundance of photosynthetic, chlorophyll-bearing cells, as shade-adapted cells may have a greater chlorophyll to biomass ration than surface variants. Further, some DCMs may be formed by the sinking of cells from surface zones or the subduction of surface waters, rather than through biotic, community-level processess." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DCM" }, { "pred" : "hasRelatedSynonym", "val" : "subsurface chlorophyll maximum layer" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Logical def is incomplete. Need to express the idea of maximum chlorophyll. This could follow a pattern like:\n\nX has_maximum_levels_of Y relative_to Z, i.e. DCM has_maximum_levels_of chlorophyll relative_to subsurface_aquatic_layer\n\nMay also be useful to include has_decreased_levels_of light intensity relative_to surface aquatic layer\n\nFurther discussion in Issue #126." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000327", "lbl" : "strand swamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A strand swamp is a swamp that forms linear drainage channels on flatlands." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000328", "lbl" : "dome swamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dome swamp is a swamp which occurs in a depression where deeper waters at the centre of the swamp allow trees to grow taller relative to those in shallower regions of the depression. This creates a dome-like shape." }, "comments" : [ "The logical def should be improved with the idea of a vegetation unit growing in a depression expressed." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000329", "lbl" : "cypress dome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cypress dome swamp is a dome swamp which has a plant community dominated by Cupressaceae, often swamp cypresses. Swamp cypresses typically belong to the genus Taxodium or the species Glyptostrobus pensilis and Actinostrobus pyramidalis." }, "comments" : [ "Requires import of some taxonomy for differentia" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cypress dome swamp" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000330", "lbl" : "cypress strand swamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cypress strand swamp is a strand swamp which has a plant community dominated by Cupressaceae, often swamp cypresses. Swamp cypresses typically belong to the genus Taxodium or the species Glyptostrobus pensilis and Actinostrobus pyramidalis." }, "comments" : [ "Requires import of some taxonomy for differentia" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cypress strand" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000331", "lbl" : "cypress swamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cypress swamp is a swamp which has a plant community dominated by Cupressaceae, often swamp cypresses. Swamp cypresses typically belong to the genus Taxodium or the species Glyptostrobus pensilis and Actinostrobus pyramidalis." }, "comments" : [ "Requires import of some taxonomy for differentia" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000332", "lbl" : "gravelly slope", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gravelly slope is a slope which has a surface primarily composed of gravel." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000333", "lbl" : "hillside", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hillside is a slope that is part of a hill." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "brae" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000334", "lbl" : "talus slope", "type" : "CLASS", "meta" : { "definition" : { "val" : "A talus slope is a slope which has a surface layer composed of scree." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "scree slope" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000335", "lbl" : "understory", "type" : "CLASS", "meta" : { "definition" : { "val" : "An understory is a layer of plant life which grows below the canopy without penetrating it.", "xrefs" : [ "https://en.wikipedia.org/wiki/Understory" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "under story" }, { "pred" : "hasExactSynonym", "val" : "undergrowth" }, { "pred" : "hasExactSynonym", "val" : "understorey" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000336", "lbl" : "shrub layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shrub layer is a layer of vegetation in a woodland or forest consisting of low, woody vegetation of frutescent form.", "xrefs" : [ "http://www.treeterms.co.uk/definitions/shrub-layer" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000337", "lbl" : "herb and fern layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A herb and fern layer is a layer of a forest or woodland which is composed of all vascular plant life that are one metre or less in height.", "xrefs" : [ "http://dx.doi.org/10.1641/B571007" ] }, "comments" : [ "This definition is inclusive of non-herbaceous plants that may be transiently present in the \"herb layer\". See Gilliam FS (2007) The Ecological Significance of the Herbaceous Layer in Temperate Forest Ecosystems. BioScience. 57(10):845-858. (http://dx.doi.org/10.1641/B571007) for rationale and a review of definitional and terminological variation." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fern layer" }, { "pred" : "hasExactSynonym", "val" : "herb layer" }, { "pred" : "hasExactSynonym", "val" : "herb stratum" }, { "pred" : "hasExactSynonym", "val" : "herbaceous layer" }, { "pred" : "hasExactSynonym", "val" : "herbaceous stratum" }, { "pred" : "hasExactSynonym", "val" : "herbaceous understory" }, { "pred" : "hasRelatedSynonym", "val" : "ground cover" }, { "pred" : "hasRelatedSynonym", "val" : "ground vegetation" }, { "pred" : "hasRelatedSynonym", "val" : "regeneration layer" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000338", "lbl" : "litter layer", "type" : "CLASS", "meta" : { "comments" : [ "Refers to the ground layer of a forest or woodland where leaf litter or other plant matter accumulates" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ground layer" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000339", "lbl" : "polar biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to polar climatic conditions." }, "comments" : [ "This class is primarily for inference and, in general, should not be used directly by annotators. If you're an annotator, please consider using a more informative term such as 'tundra biome'." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000340", "lbl" : "alpine", "type" : "CLASS", "meta" : { "definition" : { "val" : "An altitudinal condition which inheres in a bearer by virtue of the bearer having a monthly mean temperature is less than 10 degrees Celsius and being located at altitudes above the tree line and below the snowline.", "xrefs" : [ "https://en.wikipedia.org/wiki/Altitudinal_zonation" ] }, "comments" : [ "Requested term with preliminary def. See Issue 29 on the envo tracker." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "LTER:26" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000341", "lbl" : "subalpine", "type" : "CLASS", "meta" : { "definition" : { "val" : "An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude immediately below the tree line of an elevation." }, "comments" : [ "Requested in Issue 33 of our tracker. The lower boundry of this condition's range, that is, the lower altitudinal limit of an elevation that is considuered subalpine, is not clear in this definition." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000342", "lbl" : "montane", "type" : "CLASS", "meta" : { "definition" : { "val" : "An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.", "xrefs" : [ "https://en.wikipedia.org/wiki/Altitudinal_zonation" ] }, "comments" : [ "The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "LTER:350" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000343", "lbl" : "altitudinal condition", "type" : "CLASS", "meta" : { "definition" : { "val" : "An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.", "xrefs" : [ "https://en.wikipedia.org/wiki/Altitudinal_zonation" ] }, "comments" : [ "Depending on the latitude (and, to a lesser extent, other factors), the actual location of the zones where these conditions are in effect will change." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000344", "lbl" : "nival", "type" : "CLASS", "meta" : { "definition" : { "val" : "An altitudinal condition which inheres in a bearer by virtue of the bearer having extremely limited vegetation cover, silica-enriched soils, and ground cover dominated by snow and ice at altitudes above the snowline.", "xrefs" : [ "https://en.wikipedia.org/wiki/Altitudinal_zonation" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000345", "lbl" : "upper montane", "type" : "CLASS", "meta" : { "definition" : { "val" : "An upper montane condition is a montane condition in which an altitude range falls immediately below the tree line." }, "comments" : [ "This definition is somewhat odd in that it doesn't clearly define a lower boundary." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000346", "lbl" : "lower montane", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lower montane condition is a montane condition in which an altitude range falls immediately above mid-altitude forests." }, "comments" : [ "This definition does not define an upper boundary." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000347", "lbl" : "montane conifer woodland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A montane conifer woodland is a conifer woodland which is located within an altitude range that falls between mid-altitude forests and the tree line." }, "comments" : [ "Requested in Issue 56." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000348", "lbl" : "maize field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A field used for the cultivation of corn or related crop plants." }, "comments" : [ "Requested in Issue 112 as part of the curation of metagenome submissions in the European Nucleotide Archive." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000349", "lbl" : "root matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organic material primarily composed of a portion of plant root." }, "comments" : [ "Requested in Issue 115 as part of the annotation of metagenomic submissions present in the European Nucleotide Archive." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000350", "lbl" : "autoclaved sand", "type" : "CLASS", "meta" : { "definition" : { "val" : "Autoclaved sand is sand that has been sterlised by exposure to high pressure saturated steam at at least 121 degrees Celsius." }, "comments" : [ "Requested in Issue 116 as part of the annotation of metagenomic submissions present in the European Nucleotide Archive.\n" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000351", "lbl" : "obsolete marine mesoscale eddy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine mesoscale eddy is a current of marine water which has a typical horizontal diameter of less than 100 km and persists for approximately one month.", "xrefs" : [ "http://www.gfdl.noaa.gov/ocean-mesoscale-eddies" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:01000069" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000352", "lbl" : "field", "type" : "CLASS", "meta" : { "definition" : { "val" : "An unbroken expanse (as of ice)", "xrefs" : [ "http://www.merriam-webster.com/dictionary/field" ] }, "comments" : [ "This class was created to accommodate \"fields\" from agricultural fields to marine mesoscale eddy fields. Thus, it has a very broad definition which makes it less than informative when annotating. Please consider using or requesting an appropriate subclass." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000353", "lbl" : "marine mesoscale eddy field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesoscale eddy field is an expanse of marine water which includes coherent vortices, as well as a rich cascade of other structures such as filaments, squirts and spirals and is characterized by temperature and salinity anomalies with associated flow anomalies that are nearly in geostrophic balance. Although only the surface expression of mesoscale eddies is visible in satellite images of sea surface height or temperature, they are in fact three dimensional structures that reach down into the pycnocline.", "xrefs" : [ "http://www.gfdl.noaa.gov/ocean-mesoscale-eddies" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000354", "lbl" : "ice cap climatic condition", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice cap climatic condition is a polar condition in which the montly average temperature does not exceed 0 degrees Celsius.", "xrefs" : [ "https://en.wikipedia.org/wiki/Polar_climate" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000355", "lbl" : "vegetation layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which is determined by a form of vegetation." }, "comments" : [ "Usually found in woodlands and forests." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "forest layer" }, { "pred" : "hasRelatedSynonym", "val" : "forest stratum" }, { "pred" : "hasRelatedSynonym", "val" : "woodland layer" }, { "pred" : "hasRelatedSynonym", "val" : "woodland stratum" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000356", "lbl" : "granite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of granite is a portion of igneous rock which is intrusive, felsic, granular, and phaneritic.", "xrefs" : [ "https://en.wikipedia.org/wiki/Granite" ] }, "comments" : [ "Requested in issue 45. Some relations to PATO and SWEET classes suggested." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000357", "lbl" : "alkaline water", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of alkaline water is a portion of water with a pH greater than 7." }, "comments" : [ "Here, we commit to a threshold of pH as this is almost universally accepted." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000358", "lbl" : "acidic water", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of acidic water is a portion of water with a pH less than 7." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000359", "lbl" : "limestone cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave formed in limestone, usually by dissolution of limestone by acidic groundwater." }, "comments" : [ "Can be linked to a solutional environmental process and acidic groundwater." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000360", "lbl" : "solutional cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave formed by the dissolution of soluble rock or other solid material such as limestone, chalk, dolomite, gypsum, salt or marble.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cave" ] }, "comments" : [ "Can be linked to a solutional environmental process and acidic groundwater." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000361", "lbl" : "primary cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave formed at the same time as the surrounding rock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cave" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000362", "lbl" : "inflationary cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave that is formed by the action of pressurised lava pushing against surrounding rock and then draining away.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava_cave" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000363", "lbl" : "erosional cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave formed by erosion caused by flowing streams carrying rocks or sediments.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cave" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000364", "lbl" : "glacier cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier cave is a cave formed within or under a glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cave" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000365", "lbl" : "ice cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice cave is a bedrock cave which contains year-round ice formations." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000366", "lbl" : "talus cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A talus cave is a cave formed by the openings between large boulders which have fallen into a random heap.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cave" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000367", "lbl" : "anchialine cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anchialine cave is a cave which contains an anchialine pool.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cave" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000368", "lbl" : "anchialine pool", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anchialine pool is a landlocked water body with a subterranean connection to the ocean and which has fresh water towards its surface with saline water in its deeper layers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Anchialine_pool" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anchialine pond" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000369", "lbl" : "vadose cave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cave which is within a vadose zone.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mordloch" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000370", "lbl" : "tundra climatic condition", "type" : "CLASS", "meta" : { "definition" : { "val" : "An tundra climatic condition is a polar condition in which at least one month's average temperature exceeds 0 degrees Celsius.", "xrefs" : [ "https://en.wikipedia.org/wiki/Polar_climate" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000371", "lbl" : "agricultural waste material", "type" : "CLASS", "meta" : { "definition" : { "val" : "Agricultural waste is waste produced as a result of various agricultural operations. It includes manure and other wastes from farms, poultry houses and slaughterhouses; harvest waste; fertilizer run- off from fields; pesticides that enter into water, air or soils; and salt and silt drained from fields.", "xrefs" : [ "ISBN:978-92-1-161386-5", "http://stats.oecd.org/glossary/detail.asp?ID=77" ] }, "comments" : [ "As with other wastes, this is more a role than a material in itself. This should be revised." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "agricultural waste" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000372", "lbl" : "household waste material", "type" : "CLASS", "meta" : { "definition" : { "val" : "Household waste refers to waste material usually generated in the residential environment. Waste with similar characteristics may be generated in other economic activities and can thus be treated and disposed of together with household waste.", "xrefs" : [ "ISBN:978-92-1-161386-5", "http://stats.oecd.org/glossary/detail.asp?ID=1261" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "household waste" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This will become a defined class, with subclasses added through inference based on material having a 'waste role' and being associated with domestic entities." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000373", "lbl" : "biological waste material", "type" : "CLASS", "meta" : { "definition" : { "val" : "Biological waste is waste containing mostly natural organic materials (remains of plants, animal excrement, biological sludge from waste-water treatment plants and so forth).", "xrefs" : [ "ISBN:978-92-1-161386-5", "http://stats.oecd.org/glossary/detail.asp?ID=3097" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "biological waste" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This will become a defined class, with subclasses added through inference based on material having a 'waste role' and being composed primarily of some organic or biological matter." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000374", "lbl" : "dry woodland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dry woodland is a woodland which occurs in areas of rain shadow in a tropical marine climate, receives very little rainfall, typically has rapidly draining soils and trees which have adaptations to dry climates such as thick bark, small leaves, and the disposition to shed their leaves.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tropical_marine_climate" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "xerophytic ecosystem" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000375", "lbl" : "tropical marine condition", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tropical marine condition is a tropical condition in which the ocean strongly influences the climate and a wet and dry season occur.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tropical_marine_climate" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000376", "lbl" : "tropical marine semi-evergreen forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A semi-evergreen forest is a forest which undergoes a long dry season and, as a consequence, has a two-storey layer structure, a dry canopy, a leaf litter layer that only decays during moist periods trees with very small leaves or which shed their leaves to conserve water and which flower during the dry season and grow during the wet season.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tropical_marine_climate" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "semi-evergreen forest" }, { "pred" : "hasExactSynonym", "val" : "mesophytic ecosystem", "xrefs" : [ "https://en.wikipedia.org/wiki/Tropical_marine_climate" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000377", "lbl" : "humid subtropical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A humid subtropical condition is a subtropical condition in which an environmental system has hot, humid summers, warm to cool dry winters, and average annual precipitation either evenly distributed throughout the year or marked by a dry season or drying trend during winter", "xrefs" : [ "https://en.wikipedia.org/wiki/Subtropics" ] }, "comments" : [ "In cases where rainfall is evenly distributed throughout the year, this condition falls into the Cfa category of the Köppen climate classification. In cases marked by a dry season or drying trend during winter, this condition falls into the Cwa category of the Köppen climate classification. Environmental systems with this condition usually occur on the eastern side of continents." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000378", "lbl" : "arid subtropical", "type" : "CLASS", "meta" : { "definition" : { "val" : "An arid subtropical condition is a subtropical condition in which an environmental system has an annual average temperature near 18.2 degrees Celsius with their coldest month averaging between 2 and 13 degrees Celsius, the absence of regular rainfall, and high humidity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Subtropics" ] }, "comments" : [ "Mild variants are generally located in areas adjacent to powerful cold ocean currents." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "desert climate", "xrefs" : [ "https://en.wikipedia.org/wiki/Subtropics" ] }, { "pred" : "hasExactSynonym", "val" : "semi-desert climate", "xrefs" : [ "https://en.wikipedia.org/wiki/Subtropics" ] }, { "pred" : "hasRelatedSynonym", "val" : "semi-arid climate", "xrefs" : [ "https://en.wikipedia.org/wiki/Subtropics" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000379", "lbl" : "highland subtropical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A highland subtropical condition is a subtropical condition in which increased elevation results in mild summers, cooler winters, and, in some instances, snowfall associated with montly temperature averages below 22 but above -3 degrees Celsius.", "xrefs" : [ "https://en.wikipedia.org/wiki/Subtropics" ] }, "comments" : [ "This is an interesting overlap of a latitudinal and altitudinal condition. Some link between this condition and the altitudinal conditions should be considered. This condition corresponds to the Cfb and Cwb categories of Köppen climate classification." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000380", "lbl" : "oceanic temperate", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oceanic temperate condition is a temperate condition which is strongly influenced by oceans and oceanic winds. Summers are cool and winters are cool, but not cold, and there is little frozen precipitation at lower elevations.", "xrefs" : [ "https://en.wikipedia.org/wiki/Temperate_zone" ] }, "comments" : [ "This condition is typically present on the western coasts of large continental landmasses." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000381", "lbl" : "continental temperate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A continental temperate condition is a temperate condition which is influenced by large land masses. Summers are warm to hot and winters are often long, cold, and snowy.", "xrefs" : [ "https://en.wikipedia.org/wiki/Temperate_zone" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000382", "lbl" : "cold desert", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cold desert is a desert which has hot summers and cold, dry winters with temperatures below 0 degrees Celsius", "xrefs" : [ "https://en.wikipedia.org/wiki/Desert_climate#Cold_desert_climates" ] }, "comments" : [ "This variant of the desert climate is somewhat rare outside of Asia. A cold desert climate is typically found in temperate zones, almost always in the rain shadow of high mountains which restrict precipitation from the westerly winds, or in the case of Central Asia, from the monsoon. The Gobi desert in Mongolia is a classic example of a region with a cold desert climate. Though hot in summer, it shares the very cold winters of the rest of Central Asia. The Kyzyl Kum and Taklamakan deserts of Central Asia and the drier portions of the Great Basin Desert of the western United States are other major examples of BWk climates. The Ladakh region, lying in the Great Himalayas in India also has a cold desert climate." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000383", "lbl" : "temperate evergreen needleleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "An evergreen needleleaf forest which is subject to temperate climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "coniferous forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000384", "lbl" : "tropical lowland evergreen broadleaf rain forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A broadleaf forest which is subject to tropical climate patterns with high rainfall, is located in a lowland area, and is dominated by plants which retain their leaves throughout the year." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rain forest", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/6949" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000385", "lbl" : "temperate deciduous broadleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A deciduous broadleaf forest which is subject to temperate climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000386", "lbl" : "temperate deciduous needleleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A deciduous needleleaf forest which is subject to temperate climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "coniferous forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000387", "lbl" : "tropical deciduous broadleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A deciduous broadleaf forest which is subject to tropical climate patterns." }, "comments" : [ "This class corresponds to the \"Tropical Deciduous / semi-deciduous broadleaf forest\" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the \"tropical semi-deciduous broadleaf forest\" class can be made." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rain forest", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/6949" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000388", "lbl" : "tropical semi-deciduous broadleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A semi-deciduous broadleaf forest which is subject to tropical climate patterns." }, "comments" : [ "This class corresponds to the \"Tropical Deciduous / semi-deciduous broadleaf forest\" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the \"tropical deciduous broadleaf forest\" class can be made." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rain forest", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/6949" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000389", "lbl" : "temperate mixed broadleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperate mixed forest which has communities of trees composed primarily of species with broad leaves." }, "comments" : [ "This class corresponds to the \"Temperate Mixed broadleaf / needleleaf forest\" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the \"temperate mixed needleleaf forest\" class can be made." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000390", "lbl" : "temperate mixed needleleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperate mixed forest which has communities of trees composed primarily of species with needle-like leaves (e.g. conifers)." }, "comments" : [ "This class corresponds to the \"Temperate Mixed broadleaf / needleleaf forest\" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the \"temperate mixed broadleaf forest\" class can be made." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "coniferous forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000391", "lbl" : "tropical semi-evergreen moist broadleaf forest", "type" : "CLASS", "meta" : { "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rain forest", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/6949" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000392", "lbl" : "tropical upper montane forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A montane forest which is located in a region subject to tropical climate patterns modulated by sufficient elevation to encounter upper montane climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000393", "lbl" : "tropical lower montane forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A montane forest which is located in a region subject to tropical climate patterns modulated by sufficient elevation to encounter lower montane climatic patterns." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000394", "lbl" : "tropical freshwater swamp forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater swamp forest which is subject to tropical climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000395", "lbl" : "temperate sclerophyllous dry forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sclerophyllous forest which is subject to temperate climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000396", "lbl" : "tropical sclerophyllous dry forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sclerophyllous forest which is subject to tropical climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000397", "lbl" : "temperate broadleaf evergreen forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A broadleaf evergreen forest which is subject to temperate climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000398", "lbl" : "temperate freshwater swamp forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater swamp forest which is subject to temperate climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000). It is currently unclear how to relate forests and swamps." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000399", "lbl" : "tropical needleleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A needleleaf forest which is subject to tropical climate patterns." }, "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "coniferous forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000400", "lbl" : "tropical thorn forest", "type" : "CLASS", "meta" : { "comments" : [ "This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000)." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000401", "lbl" : "tropical mixed needleleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mixed needleleaf forest which has communities of trees composed primarily of species with needle-like leaves (e.g. conifers)." }, "comments" : [ "This class corresponds to the \"Tropical Mixed needleleaf / broadleaf forest\" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the \"tropical mixed broadleaf forest\" class can be made." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "coniferous forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000402", "lbl" : "tropical mixed broadleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tropical mixed broadleaf forest which has communities of trees composed primarily of species with broad leaves." }, "comments" : [ "This class corresponds to the \"Tropical Mixed needleleaf / broadleaf forest\" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the \"tropical mixed needleleaf forest\" class can be made.\n" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000403", "lbl" : "tropical mangrove", "type" : "CLASS", "meta" : { "comments" : [ "This class corresponds to the \"Tropical Mixed needleleaf / broadleaf forest\" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the \"tropical mixed needleleaf forest\" class can be made.\n\nThe relationship between this \"forest\" class and the mangrove swamp must be clarified." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tropical mangrove forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000404", "lbl" : "obsolete manufactured plastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "OBSOLETE A (portion of) plastic is an (portion of) anthropogenic environmental material including any of numerous organic synthetic or processed materials which are primarily composed of thermoplastic or thermosetting polymers of high molecular weight.", "xrefs" : [ "http://www.merriam-webster.com/dictionary/plastic" ] }, "comments" : [ "This term has been replaced by \"synthetic plastic\" as part of a more coherent set of classes as part of the SDG14.1.1 project (see https://github.com/EnvironmentOntology/envo/projects/17)" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:06105112" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000405", "lbl" : "respirable suspended particulate matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of respirable suspended particulate matter is a form of particulate matter composed primarily of solid particles each with a diameter of 10 micrometers or less.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particulates" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PM10" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000406", "lbl" : "snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "Snow is an environmental material which is primarily composed of flakes of crystalline water ice.", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/7769", "https://en.wikipedia.org/wiki/Snow" ] }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000407", "lbl" : "littoral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquatic environment which is the part of a sea, lake, or river that is close to the shore.", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, "comments" : [ "The adjacency of water has many consequences including the generation of microclimates and impacts on the biology. This class is intended to capture littoral zones that are associated with marine, freshwater, and any other aquatic environments. Note that there is no single definition of the extent of the \"littoral zone\", associated with any water body. Here, we use definitions that will be more familiar to marine biologists rather than military organisations, although the latter can be added on request. This class will likely be superceded by a CMECs compliant class." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000408", "lbl" : "environmental zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein." }, "comments" : [ "Formerly, this class was an experimental class and a subclass of \"environmental feature\". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "environmental area" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000409", "lbl" : "freshwater littoral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater littoral zone is a littoral zone which extends offshore from the shore of a freshwater body of water to the limit of occupancy of rooted plants.", "xrefs" : [ "URL:http://www.epa.gov/", "https://en.wikipedia.org/wiki/Littoral_zone" ] }, "comments" : [ "The littoral zone may form a narrow or broad fringing wetland, with extensive areas of aquatic plants sorted by their tolerance to different water depths. Typically, four zones are recognized, from higher to lower on the shore: wooded wetland, wet meadow, marsh and aquatic vegetation. Keddy, P.A. 2010. Wetland Ecology: Principles and Conservation (2nd edition). Cambridge University Press, Cambridge, UK. Chapter 2." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "fringing wetland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000410", "lbl" : "marine eulittoral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The eulittoral zone extends from the spring high tide line, which is rarely inundated, to the spring low tide line, which is rarely not inundated. The wave action and turbulence of recurring tides shapes and reforms cliffs, gaps, and caves, offering a huge range of habitats for sedentary organisms.", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "foreshore", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, { "pred" : "hasRelatedSynonym", "val" : "intertidal zone" }, { "pred" : "hasRelatedSynonym", "val" : "mediolittoral zone", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] }, { "pred" : "hasRelatedSynonym", "val" : "midlittoral zone", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000411", "lbl" : "infralittoral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone which is part of the sublittoral zone and is dominated by algae. This zone usually extends up to five metres below the low water mark.", "xrefs" : [ "https://en.wikipedia.org/wiki/Littoral_zone" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000412", "lbl" : "circalittoral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone which is part of the sublittoral zone and is dominated by sessile animals such as oysters. This zone usually begins at a depth greater than the infralittoral zone." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000413", "lbl" : "old plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A whole plant which is relatively old" } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000414", "lbl" : "young plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A whole plant which is relatively young." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000415", "lbl" : "fine respirable suspended particulate matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of fine respirable suspended particulate matter is a form of particulate matter composed primarily of solid particles each with a diameter of 2.5 micrometers or less.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particulates" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PM2.5" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000416", "lbl" : "ultrafine respirable suspended particulate matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of fine respirable suspended particulate matter is a form of particulate matter composed primarily of solid particles each with a diameter of 100 nanometers or less.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particulates", "https://en.wikipedia.org/wiki/Ultrafine_particle" ] }, "comments" : [ "Regulations do not exist for this size class of ambient air pollution particles, which are far smaller than the regulated PM10 and PM2.5 particle classes and are believed to have several more aggressive health implications than those classes of larger particulates." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000417", "lbl" : "house", "type" : "CLASS", "meta" : { "definition" : { "val" : "A house is a building that provides a dwelling-place for a living entity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Home", "https://en.wikipedia.org/wiki/House" ] }, "comments" : [ "The provisioning of a dwelling-place can perhaps be modelled as a role." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000418", "lbl" : "human house", "type" : "CLASS", "meta" : { "comments" : [ "A human house is a house which provides a dwelling-place for humans." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000419", "lbl" : "domestic garden", "type" : "CLASS", "meta" : { "definition" : { "val" : "A garden that is associated with a human house. This association is generally one of spatial proximity or parthood." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000420", "lbl" : "building part", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building part is a construction which is part of a building." }, "comments" : [ "Not recommended for annotation. This class is likely to be made into an inferred class as its subclasses are distributed among more meaningful superclasses (i.e. ceiling is_a surface layer). See for example, \"building floor\". The boundaries between building parts may be bona fide or fiat." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000421", "lbl" : "indoor kitchen", "type" : "CLASS", "meta" : { "definition" : { "val" : "An indoor kitchen is a room or part of a room primarily used for cooking or food preparation, but which may have other funcitons such as dining, food storage, dishwashing, or laundry.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kitchen" ] }, "comments" : [ "Not a sublcass of room as this may just be part of some room." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000422", "lbl" : "bathroom", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bathroom is a room which contains a washbasin or other fixture, such as a shower or bath, used for bathing by humans." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bathing room" }, { "pred" : "hasRelatedSynonym", "val" : "toilet" }, { "pred" : "hasRelatedSynonym", "val" : "washroom" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000423", "lbl" : "living room", "type" : "CLASS", "meta" : { "definition" : { "val" : "A living room is a room in a human house which is used for social and domestic leisure activities.", "xrefs" : [ "https://en.wikipedia.org/wiki/Living_room" ] }, "comments" : [ "The logical definitions must state which social and leisure activities are included here. Jet-skiing and mass rallies are probably not the range." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "living-room" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000424", "lbl" : "patio", "type" : "CLASS", "meta" : { "definition" : { "val" : "A patio is a paved outdoor area, adjacent to a human house, and used for dining or recreation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Patio" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000425", "lbl" : "indoor toilet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An indoor toilet is a room which contains a sanitation fixture used primarily for the disposal of human urine and faeces.", "xrefs" : [ "https://en.wikipedia.org/wiki/Toilet" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "restroom" }, { "pred" : "hasBroadSynonym", "val" : "toilet" }, { "pred" : "hasExactSynonym", "val" : "indoor lavatory" }, { "pred" : "hasExactSynonym", "val" : "lavatory" }, { "pred" : "hasExactSynonym", "val" : "toilet room" }, { "pred" : "hasRelatedSynonym", "val" : "bathroom" }, { "pred" : "hasRelatedSynonym", "val" : "restroom" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000426", "lbl" : "room", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building part which is separated from other building parts by one or more interior walls and, optionally, outdoor areas by one or more exterior walls.", "xrefs" : [ "https://en.wikipedia.org/wiki/Room" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000427", "lbl" : "carbon nanotube enriched soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of carbon nanotube enriched soil is a portion of soil with elevated levels of carbon nanotubes." }, "comments" : [ "Logical definition will be created pending import of \"carbon nanotube\" from CHEBI" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000428", "lbl" : "area of rocky shore", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rocky shore is an intertidal area of a seacoast where solid rock is the predominant substrate.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rocky_shore" ] }, "comments" : [ "This label is usually used to refer to 'rocky intertidal shores', i.e. a marine environment. Other types of rocky shore should be requested explicitly. Additionally, \"rocky\" could be a quality, this would link this with rocky deserts etc." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rocky intertidal shore" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000429", "lbl" : "burrow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A burrow is a hole or tunnel excavated into the ground by an animal to create a space suitable for habitation, temporary refuge, or as a byproduct of locomotion", "xrefs" : [ "https://en.wikipedia.org/wiki/Burrow" ] }, "comments" : [ "Should be better defined logically aggregating 'hole' or 'tunnel' with some sort of relation to 'habitation' etc." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000430", "lbl" : "broadleaf forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A forest biome which contains densely packed populations or communities of broadleaf trees, strongly limiting light penetration to the forest floor." }, "comments" : [ "A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000431", "lbl" : "mixed forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A forest ecosystem which contains densely packed populations or communities of broadleaf and coniferous trees, strongly limiting light penetration to the forest floor." }, "comments" : [ "A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending. The subclasses of this class need to be checked: are they properly placed under other classes or is this corrected and the dominant form of mixed vegetation noted in the label?" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000432", "lbl" : "swamp forest", "type" : "CLASS", "meta" : { "comments" : [ "A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000433", "lbl" : "needleleaf forest", "type" : "CLASS", "meta" : { "comments" : [ "A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "coniferous forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000434", "lbl" : "sclerophyllous forest", "type" : "CLASS", "meta" : { "comments" : [ "A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000435", "lbl" : "montane forest", "type" : "CLASS", "meta" : { "comments" : [ "A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000436", "lbl" : "waterborne particulate matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate environmental material in which small portions of solid material are surrounded by water." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class should be populated by inference, relying on 'composed primarily of', many 'pieces of solid material' and 'surrounded by' some 'water'." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000437", "lbl" : "lava field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lava field is an expanse of flat-lying lava flows. Such features are generally composed of highly fluid basalt lava, and can extend for tens or even hundreds of miles across the underlying terrain.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava_field" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lava area" }, { "pred" : "hasExactSynonym", "val" : "lava bed", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava_field" ] }, { "pred" : "hasExactSynonym", "val" : "lava plain", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava_field" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000438", "lbl" : "lava flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lava flow is a moving outpouring of lava, which is created during a non-explosive effusive eruption.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000439", "lbl" : "andesitic volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcano which has been formed as a result of the eruption of andesitic lava.", "xrefs" : [ "https://en.wikipedia.org/wiki/Andesite", "https://www.pmfias.com/volcanism-andesitic-basaltic-lava-distribution-of-volcanoes/" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000440", "lbl" : "dacitic volcano", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcano which has been formed as a result of the eruption of dacitic lava." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000441", "lbl" : "andesite", "type" : "CLASS", "meta" : { "definition" : { "val" : "Andesite is an extrusive igneous, volcanic rock, of intermediate composition, with aphanitic to porphyritic texture.", "xrefs" : [ "https://en.wikipedia.org/wiki/Andesite" ] }, "comments" : [ "In a general sense, it is the intermediate type between basalt and dacite, and ranges from 57 to 63 percent silicon dioxide as illustrated in TAS diagrams. The mineral assemblage is typically dominated by plagioclase plus pyroxene and/or hornblende. Magnetite, zircon, apatite, ilmenite, biotite, and garnet are common accessory minerals. Alkali feldspar may be present in minor amounts." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000442", "lbl" : "dacite", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dacite is an igneous, volcanic rock. It has an aphanitic to porphyritic texture and is intermediate in composition between andesite and rhyolite. Dacite consists mostly of plagioclase feldspar with biotite, hornblende, and pyroxene (augite and/or enstatite). It has quartz as rounded, corroded phenocrysts, or as an element of the ground-mass. The plagioclase ranges from oligoclase to andesine and labradorite. Sanidine occurs, although in small proportions, in some dacites, and when abundant gives rise to rocks that form transitions to the rhyolites.", "xrefs" : [ "https://en.wikipedia.org/wiki/dacite" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000443", "lbl" : "salt mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "An accumulation of a salt, typically sodium chloride." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000444", "lbl" : "dacitic lava", "type" : "CLASS", "meta" : { "definition" : { "val" : "Lava which is high in silica and low in alkali metal oxides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dacite" ] }, "comments" : [ "Rapid solidification of this lava forms dacite." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000445", "lbl" : "disturbed ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which has been subject to a perturbation, that is, the ecosystem has undergone a pronounced change in response to a change in environmental conditions or other perturbation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Disturbance_(ecology)" ] }, "comments" : [ "This is often used by plant collectors when early successional species are observed in an area." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000446", "lbl" : "ravine", "type" : "CLASS", "meta" : { "definition" : { "val" : "A ravine is a small, narrow, steep-sided valley that is larger than a gully and smaller than a canyon and that is usually worn by running water.", "xrefs" : [ "http://www.merriam-webster.com/dictionary/ravine" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000447", "lbl" : "roadside", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone of varying area which is adjacent to a road." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000448", "lbl" : "mixed grassland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A grassland which contains a mixture of tall and short grasses.", "xrefs" : [ "http://worldwildlife.org/ecoregions/na0810", "https://en.wikipedia.org/wiki/Central_and_Southern_mixed_grasslands", "https://en.wikipedia.org/wiki/Northern_mixed_grasslands" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "mixed grassland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000449", "lbl" : "wet meadow ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wet meadow is a type of wetland with soils that are saturated with water for part or all of the growing season.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wet_meadow" ] }, "comments" : [ "Debate exists whether a wet meadow is a type of marsh or a completely separate type of wetland. Wet prairies and wet savannas are hydrologically similar. Wet meadows may occur because of restricted drainage or the receipt of large amounts of water from rain or melted snow. They may also occur in riparian zones and around the shores of large lakes. Unlike a marsh or swamp, a wet meadow does not have standing water present except for brief to moderate periods during the growing season. Instead, the ground in a wet meadow fluctuates between brief periods of inundation and longer periods of saturation. Wet meadows often have large numbers of wetland plant species, which frequently survive as buried seeds during dry periods, and then regenerate after flooding. Wet meadows therefore do not usually support aquatic life such as fish. They typically have a high diversity of plant species, and may attract large numbers of birds, small mammals and insects including butterflies." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000450", "lbl" : "salt glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of salt which has erupted onto a planetary surface, usually through sedimentary rock.", "xrefs" : [ "Adapted from URL:http://earthobservatory.nasa.gov/IOTD/view.php?id=86861" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "namakier" }, { "pred" : "hasExactSynonym", "val" : "salt fountain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000451", "lbl" : "atmospheric carbon dioxide", "type" : "CLASS", "meta" : { "definition" : { "val" : "Atmospheric carbon dioxide is an environmental material composed of carbon dioxide in its gaseous form present in an atmosphere." }, "comments" : [ "This could also be considered a part of an environmental material like air." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000452", "lbl" : "environmental disposition", "type" : "CLASS", "meta" : { "definition" : { "val" : "A disposition which is realised by an environmental system or system parts thereof." }, "comments" : [ "This class and its subclasses are experimental and are being developed with NCEAS use cases in mind." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000453", "lbl" : "carbon pooling disposition", "type" : "CLASS", "meta" : { "definition" : { "val" : "The disposition of an environmental system to sequester and store carbon." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000454", "lbl" : "carbon dioxide pooling disposition", "type" : "CLASS", "meta" : { "definition" : { "val" : "The disposition of an environment to sequester carbon dioxide, subsequently storing the carbon component thereof." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000455", "lbl" : "material pooling disposition", "type" : "CLASS", "meta" : { "definition" : { "val" : "The disposition of an environmental system to sequester and store some material entity." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000456", "lbl" : "concrete masonry unit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concrete masonry unit is a large, rectangular masonry unit primarily composed of concrete.", "xrefs" : [ "https://en.wikipedia.org/wiki/Concrete_masonry_unit" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000457", "lbl" : "masonry unit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A masonry unit is a solid piece of material, usually with a regular shape, used as a component in the construction of buildings. Masonry units are usually composed of brick, stone, marble, granite, travertine, limestone, cast stone, concrete block, glass block, stucco, tile, or cob.", "xrefs" : [ "https://en.wikipedia.org/wiki/Masonry" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000458", "lbl" : "concrete", "type" : "CLASS", "meta" : { "definition" : { "val" : "Concrete is a composite material composed of an aggregate bonded together with a fluid cement which hardens over time.", "xrefs" : [ "https://en.wikipedia.org/wiki/Concrete" ] }, "comments" : [ "Missing the class for \"aggregate\" - tricky to define what it is, exactly. Again, seems more like some sort of material/disposition hybrid." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000459", "lbl" : "asphalt concrete", "type" : "CLASS", "meta" : { "definition" : { "val" : "Asphaltic concrete is a concrete which uses refined asphalt as a cement.", "xrefs" : [ "https://en.wikipedia.org/wiki/Concrete" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "asphaltic concrete" }, { "pred" : "hasExactSynonym", "val" : "road pavement" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000460", "lbl" : "asphalt", "type" : "CLASS", "meta" : { "definition" : { "val" : "Asphalt also known as bitumen is a sticky, black, and highly viscous liquid or semi-solid form of petroleum.", "xrefs" : [ "https://en.wikipedia.org/wiki/Asphalt" ] }, "comments" : [ "This class refers to naturally-occuring asphalt or bitumen." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "asphaltum" }, { "pred" : "hasExactSynonym", "val" : "bitumen" }, { "pred" : "hasExactSynonym", "val" : "crude bitumen" }, { "pred" : "hasRelatedSynonym", "val" : "pitch" }, { "pred" : "hasRelatedSynonym", "val" : "tar" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000461", "lbl" : "refined asphalt", "type" : "CLASS", "meta" : { "definition" : { "val" : "Refined asphalt is a sticky, black, and highly viscous liquid or semi-solid with a boiling point above 500 degrees Celsius, obtained from the fractional distillation of crude oil.", "xrefs" : [ "https://en.wikipedia.org/wiki/Asphalt" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "refined bitumen" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000462", "lbl" : "masonry cement", "type" : "CLASS", "meta" : { "definition" : { "val" : "Masonry cement is a substance used in construction that has the disposition to set and harden and thus may be used to bind materials together.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cement" ] }, "comments" : [ "\"Cement\" refers more to a disposition than a specific material." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cement" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000463", "lbl" : "hydraulic cement", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hydraulic cement is a masonry cement which contains activated aluminium silicates or pozzolans, such as fly ash, allowing it to set in wet conditions or underwater.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cement" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000464", "lbl" : "non-hydraulic cement", "type" : "CLASS", "meta" : { "definition" : { "val" : "Non-hydraulic cement is a cement which sets by reacting with carbon dioxide in the air and will not set in wet conditions or underwater. It is susceptible to attack by aggresive chemicals after setting.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cement" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000465", "lbl" : "building wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "Building walls are bulding parts which serve to support roofs, floors and ceilings; enclose a space as part of the building envelope; give buildings form; and to provide shelter and security.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wall" ] }, "comments" : [ "This is a building part and not the same as a standalone wall, which is a building in its own right." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000466", "lbl" : "boundary wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A boundary wall is a constructed barrier which is usually opaque, constructed from masonry, and of greater structural strength than a fence.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wall#Boundary_wall" ] }, "comments" : [ "This is not the same as a wall that is part of a building. use ENVO:01000420 for the latter." ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "defensive wall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000467", "lbl" : "constructed barrier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A constructed barrier is a freestanding wall, berm, or fence built to limit movement of entities across a boundary.", "xrefs" : [ "https://en.wikipedia.org/wiki/Border_barrier" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "barrier" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000468", "lbl" : "fence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fence is a constructed barrier which is generally of lighter construction than a wall and used to provide visual sectioning of spaces.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fence" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000469", "lbl" : "exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "An exterior wall is a building wall which separates the interior of a building from the buildings surrounding environment." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000470", "lbl" : "building envelope", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building envelope is a building part composed of those building parts which physically separate the interior of a building from its surrounding environment.\nThe building envelope provides resistance to air, water, heat, light, and noise transfer. The three basic elements of a building envelope are a weather barrier, air barrier, and thermal barrier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Building_envelope" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "building enclosure" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000471", "lbl" : "ceiling", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "A ceiling is an overhead interior surface that covers the upper limit of a room. It is not generally considered a structural element, but a finished surface concealing the underside of the floor or roof structure above.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ceiling" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000472", "lbl" : "building roof", "type" : "CLASS", "meta" : { "definition" : { "val" : "A roof is the covering on the uppermost part of a building which provides protection from animals and weather, notably rain, but also heat, wind and sunlight. A roof is also the framing or structure which supports the covering", "xrefs" : [ "https://en.wikipedia.org/wiki/Roof" ] }, "comments" : [ "This class is meant to represent roofs which are parts of buildings, rather than a roofs of cave and other natural formations." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "roof" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000473", "lbl" : "thatch", "type" : "CLASS", "meta" : { "definition" : { "val" : "Thatch is material composed of dry vegetation such as straw, water reed, sedge (Cladium mariscus), rushes, or heather.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thatching" ] }, "comments" : [ "Some sort of logical definition towards:\ncomposed_primarily_of some ((straw or 'water reed' or rushes or sedge or heather) and has_quality dry)\nshould be considered, where \"rushes\", \"sedge\", etc are represented as materials rather than some sort of taxon." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000474", "lbl" : "brick material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of brick material is a material derived from a brick which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete that has been fire-hardened or air-dried.", "xrefs" : [ "https://en.wikipedia.org/wiki/Brick" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000475", "lbl" : "brick", "type" : "CLASS", "meta" : { "definition" : { "val" : "A brick is a masonry unit which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete material, fire-hardened or air-dried.", "xrefs" : [ "https://en.wikipedia.org/wiki/Brick" ] }, "comments" : [ "Generally used to refer to the masonry unit rather than a material." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000476", "lbl" : "plaster", "type" : "CLASS", "meta" : { "definition" : { "val" : "Plaster is a building material which has the disposition to harden when it reacts with water, liberating heat through crystallization. Plaster is manufactured as a dry powder and is mixed with water to form a paste when used.", "xrefs" : [ "https://en.wikipedia.org/wiki/Plaster" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "render" }, { "pred" : "hasExactSynonym", "val" : "stucco" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000477", "lbl" : "gypsum plaster", "type" : "CLASS", "meta" : { "definition" : { "val" : "Gypsum plaster is a plaster which is formed by partially dehydrating gypsum by heating it to approximately 150 degrees Celsius and grinding the product into a powder. Gypsum anhydride - formed by heating gypsum above 200 degrees Celsius - may also be used as plaster.", "xrefs" : [ "https://en.wikipedia.org/wiki/Plaster" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "plaster of Paris" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000478", "lbl" : "cement plaster", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cement render" }, { "pred" : "hasExactSynonym", "val" : "cement stucco" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000479", "lbl" : "lime plaster", "type" : "CLASS", "meta" : { "definition" : { "val" : "Lime plaster is a plaster which is primarily composed of calcium hydroxide and an inert filler (such as sand). Coversion of the calcium hydroxide to calcium carbonate through a reaction with carbon dioxide in the air causes the plaster to set.", "xrefs" : [ "https://en.wikipedia.org/wiki/Plaster" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lime render" }, { "pred" : "hasExactSynonym", "val" : "lime stucco" }, { "pred" : "hasExactSynonym", "val" : "slaked lime plaster" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000480", "lbl" : "glass", "type" : "CLASS", "meta" : { "definition" : { "val" : "Glass is an amorphous (non-crystalline) solid which is often transparent.", "xrefs" : [ "https://en.wikipedia.org/wiki/Glass" ] }, "comments" : [ "This class refers to all forms of glass. For the familiar form present in window panes and drinking glasses, consider silica-based glass." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000481", "lbl" : "silica-based glass", "type" : "CLASS", "meta" : { "definition" : { "val" : "Silica-based glass is a glass composed primarily of silicon dioxide, the primary constituent of sand." }, "comments" : [ "Silica-based glasses are the most common manufactured variety of glass." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "glass" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000482", "lbl" : "soda-lime glass", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soda-lime glass is a silica-based glass which is composed of approximately 75% silicon dioxide, with sodium oxide and calcium oxide consituting most of its remaining composition.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soda-lime_glass" ] }, "comments" : [ "This type of glass constitutes 90% of manufactured glass." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "glass" }, { "pred" : "hasExactSynonym", "val" : "soda-lime-silica glass" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000483", "lbl" : "flat glass", "type" : "CLASS", "meta" : { "definition" : { "val" : "Flat glass is a soda-lime glass which is composed of approximately 73% silicon dioxide (silica), 14% sodium oxide, 9% calcium oxide, 4% magnesium oxide, 0.15% aluminium oxide, 0.03% potassium oxide, 0.02% titanum dioxide, and 0.01% iron III oxide.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soda-lime_glass" ] }, "comments" : [ "Most flat glass is soda-lime glass produced by the float glass process. It is more water soluble than container glass." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "plate glass" }, { "pred" : "hasExactSynonym", "val" : "sheet glass" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000484", "lbl" : "container glass", "type" : "CLASS", "meta" : { "definition" : { "val" : "Container glass is a soda-lime glass which is composed of approximately 74% silicon dioxide (silica), 13% sodium oxide, 10.5% calcium oxide, 1.3% aluminium oxide, 0.3% potassium oxide, 0.2% sulphur trioxide, 0.2% magnesium oxide, 0.04% iron III oxide, and 0.01% titanum dioxide.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soda-lime_glass" ] }, "comments" : [ "Container glass is less water soluble than flat glass." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000485", "lbl" : "quartz glass", "type" : "CLASS", "meta" : { "definition" : { "val" : "Quartz glass is a glass which is composed of silica in amorphous (non-crystalline) form.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fused_quartz" ] }, "comments" : [ "This is \"pure\" silica glass. As an ENVO:\"environmental material\" this class assumes that there remains some possibility that 'contaminants' being present." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fused quartz" }, { "pred" : "hasExactSynonym", "val" : "fused silica" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000486", "lbl" : "building floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building floor is a surface layer which is part of a building and used for walking." }, "comments" : [ "To be more precise, a subfloor and a floor covering may be specified. Please request these classes and propose definitions if they are needed." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000487", "lbl" : "brick building floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A brick building floor is a building floor that is composed primarily of brick material or is built from bricks." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "brick floor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000488", "lbl" : "wooden building floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wooden building floor is a building floor that is composed primarily of wood." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "wooden floor" }, { "pred" : "hasNarrowSynonym", "val" : "wooden parquet floor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000489", "lbl" : "concrete building floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concrete building floor is a building floor that is composed primarily of concrete" }, "comments" : [ "At times, this is called a cement floor, although that is probably not accurate." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "concrete floor" }, { "pred" : "hasRelatedSynonym", "val" : "cement building floor" }, { "pred" : "hasRelatedSynonym", "val" : "cement floor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000490", "lbl" : "sandy building floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sandy building floor is a building floor that is composed primarily of sand." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sand floor" }, { "pred" : "hasBroadSynonym", "val" : "sandy floor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000491", "lbl" : "glass building floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glass building floor is a building floor which is composed primarily of glass." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "glass floor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000492", "lbl" : "dung building floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dung building floor is a building floor which is composed primarily of dried animal feces." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "dung floor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000493", "lbl" : "stone building floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stone building floor is a building floor that is composed primarily of rock." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "rock floor" }, { "pred" : "hasBroadSynonym", "val" : "stone floor" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000494", "lbl" : "thatched exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thatched exterior wall is an exterior wall that is composed primarily of thatch." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "thatch wall" }, { "pred" : "hasBroadSynonym", "val" : "thatched wall" }, { "pred" : "hasExactSynonym", "val" : "thatch exterior wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000495", "lbl" : "stone exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stone exterior wall is an exterior wall that is composed primarily of rock." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "stone wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000496", "lbl" : "straw exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A straw exterior wall is an exterior wall that is composed primarily of straw." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "straw wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000497", "lbl" : "mud exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mud exterior wall is an exterior wall that is composed primarily of mud." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "mud wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000498", "lbl" : "pole", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid, cylindrical object or column with its length greater than its diameter.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pole" ] }, "comments" : [ "This was created in response to a user request, but it is an odd class in that it specifies a shape rather than a particular material entity. It may, therefore, be deprecated when more meaningful or sensible alternatives become apparent." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000499", "lbl" : "pole-reinforced mud exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pole-reinforced mud exterior wall is a mud exterior wall which is supported and reinforced by poles." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "mud and poles wall" }, { "pred" : "hasExactSynonym", "val" : "mud and poles exterior wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000500", "lbl" : "brick exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A brick exterior wall is an exterior wall that is built from bricks." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "brick wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000501", "lbl" : "burnt brick", "type" : "CLASS", "meta" : { "definition" : { "val" : "A burnt brick is a brick which has been dried at an elvated temperature in a kiln, furnace, or with similar technology ." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000502", "lbl" : "unburnt brick", "type" : "CLASS", "meta" : { "definition" : { "val" : "An unburnt brick is a brick which has been air dried rather than dried at an elvated temperature in a kiln, furnace, or with similar technology ." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000503", "lbl" : "burnt-brick exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A burnt brick exterior wall is an exterior wall that is built from burnt bricks." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "burnt-brick wall" }, { "pred" : "hasExactSynonym", "val" : "burnt brick exterior wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000504", "lbl" : "unburnt-brick exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "An unburnt brick exterior wall is an exterior wall that is built from unburnt bricks." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "brick wall" }, { "pred" : "hasExactSynonym", "val" : "unburnt brick exterior wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000505", "lbl" : "salt dome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dome-shaped mass of salt formed when a thick bed of evaporite minerals (mainly salt, or halite) found at depth intrudes vertically into surrounding rock strata, forming a diapir.", "xrefs" : [ "https://en.wikipedia.org/wiki/Salt_dome" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000506", "lbl" : "concrete exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concrete exterior wall is an exterior wall that is composed primarily of concrete." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "concrete wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000507", "lbl" : "iron sheet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An iron sheet is a mass of iron which has been forged into a roughly planar form of less than 6 millimetres in thickness.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sheet_metal" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000508", "lbl" : "salt material", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000509", "lbl" : "sheet-iron exterior wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sheet-iron exterior wall is an exterior wall that is built from sheets of iron." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sheet iron wall" }, { "pred" : "hasBroadSynonym", "val" : "sheet-iron wall" }, { "pred" : "hasExactSynonym", "val" : "iron sheet wall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000510", "lbl" : "sheet-iron building roof", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sheet-iron building roof is a building roof that is built from sheets of iron." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sheet iron roof" }, { "pred" : "hasBroadSynonym", "val" : "sheet-iron roof" }, { "pred" : "hasExactSynonym", "val" : "iron sheet building roof" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000511", "lbl" : "thatched building roof", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thatched building roof is a building roof that is built by thatching (or out of thatch)." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "thatch roof" }, { "pred" : "hasBroadSynonym", "val" : "thatched roof" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000512", "lbl" : "wooden building roof", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wooden building roof is a building roof that is built from wood." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "wood roof" }, { "pred" : "hasBroadSynonym", "val" : "wooden roof" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000513", "lbl" : "asbestos building roof", "type" : "CLASS", "meta" : { "definition" : { "val" : "An asbestos building roof is a building roof that is built from asbestos." }, "comments" : [ "asbestos exists in CHEBI and will be imported to complete this class' logical def." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "asbestos roof" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000514", "lbl" : "tile", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tile is a manufactured piece of hard-wearing material such as ceramic, stone, metal, or even glass, generally used for covering roofs, floors, walls, showers, or other objects such as tabletops. Alternatively, tile can sometimes refer to similar units made from lightweight materials such as perlite, wood, and mineral wool, typically used for wall and ceiling applications.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tile" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000515", "lbl" : "tiled building roof", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tile building roof is a building roof that is built using tiles." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "tile roof" }, { "pred" : "hasBroadSynonym", "val" : "tiled roof" }, { "pred" : "hasExactSynonym", "val" : "tile building roof" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000516", "lbl" : "toilet fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fixture which is used primarily for the collection and, in some cases, disposal of human urine and feces.", "xrefs" : [ "https://en.wikipedia.org/wiki/Toilet" ] }, "comments" : [ "\"disposal\" may not be the most precise way to describe fill-in latrines. Note that no assertion is made on whether these fixtures are in- or outdoors." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "toilet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000517", "lbl" : "pit latrine", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pit latrine is a latrine which is constructed by digging a hole in the ground.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pit_latrine" ] }, "comments" : [ "This class refers to human latrines. Note that some pit latrines can use pour-flush mechanisms. \"Infectious diarrhea resulted in about 0.7 million deaths in children under five years old in 2011 and 250 million lost school days.[4][5] Pit latrines are the lowest cost method of separating feces from people.[3]\" - https://en.wikipedia.org/wiki/Pit_latrine" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pit toilet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000518", "lbl" : "diapir", "type" : "CLASS", "meta" : { "definition" : { "val" : "A diapir is a type of geologic intrusion in which a more mobile and ductily deformable material is forced into brittle overlying rocks due to its higher buoyancy." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Unclear whether this should be a subclass of intrusion, as diapirism can actually cause fracturing." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000519", "lbl" : "latrine", "type" : "CLASS", "meta" : { "definition" : { "val" : "A latrine is a toilet which is of simple construction (relative to a flush or chemical toilet) and typically intended for communal use.", "xrefs" : [ "https://en.wikipedia.org/wiki/Latrine" ] }, "comments" : [ "This class refers to human latrines." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000520", "lbl" : "latrine slab", "type" : "CLASS", "meta" : { "definition" : { "val" : "A latrine slab is a broad, flat, thick piece of solid material (typically stone or concrete) used as the floor of a latrine and which includes a hole through which excreta are deposited into a latrine pit.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pit_latrine" ] }, "comments" : [ "This could be moved to \"surface layer\" like other floors, although more thought has to be given to \"floor\": a role of a surface layer?\n\"The hole in the slab should not be larger than 25 centimeters (9.8 inches) to prevent children falling in.\" https://en.wikipedia.org/wiki/Pit_latrine" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000521", "lbl" : "batholith", "type" : "CLASS", "meta" : { "definition" : { "val" : "A batholith is an area of mostly continuous plutonic (igneous intrusive) rock that covers an area larger than 100 square kilometers, formed in the planetary crust, and exposed by erosion. On Earth, Batholiths are almost always made mostly of felsic or intermediate rock-types, such as granite, quartz monzonite, or diorite.", "xrefs" : [ "https://en.wikipedia.org/wiki/Batholith" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The form of erosion should be further specified." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000522", "lbl" : "latrine pit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A latrine pit is an artificial hole or cavity in the ground used to collect human excreta.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pit_latrine" ] }, "comments" : [ "A latrine pit is typically at least 3 metres (10 feet) deep and 1 metre (3.2 feet) across." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000523", "lbl" : "pit latrine with slab floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pit latrine with a slab floor is a pit latrine which has a latrine slab as a floor.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pit_latrine" ] }, "comments" : [ "This class refers to human latrines. \"Infectious diarrhea resulted in about 0.7 million deaths in children under five years old in 2011 and 250 million lost school days.[4][5] Pit latrines are the lowest cost method of separating feces from people.[3]\" - https://en.wikipedia.org/wiki/Pit_latrine" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "pit toilet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000524", "lbl" : "outhouse", "type" : "CLASS", "meta" : { "definition" : { "val" : "An outhouse is a small structure, separate from a main building, which covers a pit latrine or a dry toilet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Outhouse" ] }, "comments" : [ "\"Outside North America, the term \"outhouse\" refers not to a toilet but to outbuildings in a general sense.\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "earth closet" }, { "pred" : "hasExactSynonym", "val" : "latrine covering" }, { "pred" : "hasExactSynonym", "val" : "latrine shelter" }, { "pred" : "hasRelatedSynonym", "val" : "dunny" }, { "pred" : "hasRelatedSynonym", "val" : "privy" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000525", "lbl" : "rock intrusion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An intrusion which is primarily composed of rock which has been formed within a pre-existing fracture in a larger mass of rock." }, "comments" : [ "While some intrusions are still located in the fracture where they formed, others may be (partially) exposed by erosional processes." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000526", "lbl" : "sedimentary intrusion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rock intrusion which is composed primarily of sedimentary rock." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Subclasses of this class will be created by inference." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000527", "lbl" : "flush toilet fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A toilet fixture which uses water to flush liquid and solid excreta into a sewage containment or processing facility through a drainpipe.", "xrefs" : [ "https://en.wikipedia.org/wiki/Toilet" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "flush toilet" }, { "pred" : "hasBroadSynonym", "val" : "toilet" }, { "pred" : "hasRelatedSynonym", "val" : "bog" }, { "pred" : "hasRelatedSynonym", "val" : "comfort room" }, { "pred" : "hasRelatedSynonym", "val" : "dunny" }, { "pred" : "hasRelatedSynonym", "val" : "head" }, { "pred" : "hasRelatedSynonym", "val" : "john" }, { "pred" : "hasRelatedSynonym", "val" : "lavatory" }, { "pred" : "hasRelatedSynonym", "val" : "loo" }, { "pred" : "hasRelatedSynonym", "val" : "pot" }, { "pred" : "hasRelatedSynonym", "val" : "the heads" }, { "pred" : "hasRelatedSynonym", "val" : "water closet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000528", "lbl" : "dry toilet fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A toilet fixture which uses little to no water; excreta is removed manually or composted in situ.", "xrefs" : [ "https://en.wikipedia.org/wiki/Toilet" ] }, "comments" : [ "Subclasses will probably be filled in by inference." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "dry toilet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000529", "lbl" : "chemical toilet fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chemical toilet fixture is a toilet fixture which uses chemicals to deodorise and treat excreta which is stored in the fixture.", "xrefs" : [ "https://en.wikipedia.org/wiki/Chemical_toilet" ] }, "comments" : [ "\"In the past, disinfection was generally carried out by mixing formaldehyde, bleach or similar chemicals with the toilet water when flushed...[F]ormaldehyde is very irritating to the eyes, ears, skin, nose, and throat, it is being replaced by other proprietary blends such as glutaraldehyde and quaternary ammonium compounds, with non-staining dyes and nature-identical perfume oils. Additionally, enzyme hybrids are sometimes used.\" https://en.wikipedia.org/wiki/Chemical_toilet" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "chemical toilet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000530", "lbl" : "ventilated improved pit latrine", "type" : "CLASS", "meta" : { "definition" : { "val" : "A ventilated improved pit latrine is a pit latrine which includes a vent pipe fitted to the pit with a flyscreen covering the pipe's outlet. Air currents moving across the outlet of the vent pipe create a vaccum which draws odors out of the latrine's superstructure.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pit_latrine" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ventilated pit latrine" }, { "pred" : "hasExactSynonym", "val" : "VIP latrine" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000531", "lbl" : "covered latrine", "type" : "CLASS", "meta" : { "definition" : { "val" : "A covered latrine is a building which comprises a latrine sheltered by an outhouse.", "xrefs" : [ "https://en.wikipedia.org/wiki/Latrine" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000532", "lbl" : "covered pit latrine", "type" : "CLASS", "meta" : { "definition" : { "val" : "A covered pit latrine is a building which comprises a pit latrine sheltered by an outhouse.", "xrefs" : [ "https://en.wikipedia.org/wiki/Latrine" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000533", "lbl" : "covered pit latrine with slab floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A covered pit latrine with slab is a building which comprises a pit latrine with a slab floor sheltered by an outhouse.", "xrefs" : [ "https://en.wikipedia.org/wiki/Latrine" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000534", "lbl" : "pour-flush toilet fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flush toilet fixture into which water is manually poured to dispose of excreta.", "xrefs" : [ "https://en.wikipedia.org/wiki/Toilet" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "flush toilet" }, { "pred" : "hasBroadSynonym", "val" : "toilet" }, { "pred" : "hasExactSynonym", "val" : "pour flush toilet fixture" }, { "pred" : "hasRelatedSynonym", "val" : "bog" }, { "pred" : "hasRelatedSynonym", "val" : "comfort room" }, { "pred" : "hasRelatedSynonym", "val" : "dunny" }, { "pred" : "hasRelatedSynonym", "val" : "head" }, { "pred" : "hasRelatedSynonym", "val" : "john" }, { "pred" : "hasRelatedSynonym", "val" : "lavatory" }, { "pred" : "hasRelatedSynonym", "val" : "loo" }, { "pred" : "hasRelatedSynonym", "val" : "pot" }, { "pred" : "hasRelatedSynonym", "val" : "the heads" }, { "pred" : "hasRelatedSynonym", "val" : "water closet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000535", "lbl" : "pour-flush pit latrine", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pit latrine which includes a water seal (U-trap or siphon) used over one or two offset pits instead of a plain hole or seat. Water is manually poured through the trap to flush excreta into the latrine pit.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pit_latrine" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "toilet" }, { "pred" : "hasRelatedSynonym", "val" : "bog" }, { "pred" : "hasRelatedSynonym", "val" : "dunny" }, { "pred" : "hasRelatedSynonym", "val" : "head" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000536", "lbl" : "factory", "type" : "CLASS", "meta" : { "definition" : { "val" : "A factory (previously manufactory) or manufacturing plant is an industrial site, usually consisting of buildings and machinery, or more commonly a complex having several buildings, where workers manufacture goods or operate machines processing one product into another.", "xrefs" : [ "https://en.wikipedia.org/wiki/Factory" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "manufactory" }, { "pred" : "hasExactSynonym", "val" : "manufacturing plant" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000537", "lbl" : "atmospheric ozone", "type" : "CLASS", "meta" : { "definition" : { "val" : "Atmospheric ozone is an environmental material primarily composed of ozone in its gaseous form and present in an atmosphere." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "atmospheric ozone", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/632" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000538", "lbl" : "stratosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "The layer of the atmosphere which is sandwiched between the troposphere and mesosphere. Of the energy that reaches the Earth from the sun, only 3% is absorbed in the stratosphere, but that includes the vitally important process of absorption of ultraviolet radiation by the stratospheric ozone layer. The stratosphere is cloudless and dust free, and almost unaffected by the turbulent conditions of the underlying level of the atmosphere. (Source: WRIGHT)", "xrefs" : [ "GEMET:http://www.eionet.europa.eu/gemet/concept/8128" ] }, "comments" : [ "Definition from GEMET - will be refined." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000539", "lbl" : "mesosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "The mesosphere is part of the earth's atmosphere which is between the stratosphere and the thermosphere in which temperature decreases with altitude to the atmosphere's absolute minimum", "xrefs" : [ "http://www.merriam-webster.com/dictionary/mesosphere" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000540", "lbl" : "troposphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "The lowest of the concentric layers of the atmosphere, occurring between the Earth's surface and the tropopause. It is the zone where atmospheric turbulence is at its greatest and where the bulk of the Earth's weather is generated. It contains almost all the water vapour and aerosols and three-quarters of the total gaseous mass of the atmosphere. Throughout the troposphere temperature decreases with height at a mean rate of 6.5°C/km and the whole zone is capped by either an inversion of temperature or an isothermal layer at the tropopause. (Source: WHIT)", "xrefs" : [ "GEMET:http://www.eionet.europa.eu/gemet/concept/8695" ] }, "comments" : [ "Definition from GEMET - will be refined." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000541", "lbl" : "thermosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "The thermosphere is a part of the earth's atmosphere that begins at about 50 miles (80 kilometers) above the earth's surface, extends to outer space, and is characterized by steadily increasing temperature with height", "xrefs" : [ "http://www.merriam-webster.com/dictionary/thermosphere" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000542", "lbl" : "ozone layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "The ozone layer is a layer of gases in the stratosphere which contains high concentrations of ozone gas relative to other parts of the atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ozone_layer" ] }, "comments" : [ "\"The ozone layer contains less than 10 parts per million of ozone, while the average ozone concentration in Earth's atmosphere as a whole is only about 0.3 parts per million. The ozone layer is mainly found in the lower portion of the stratosphere, from approximately 20 to 30 kilometres (12 to 19 mi) above Earth, though the thickness varies seasonally and geographically\"- https://en.wikipedia.org/wiki/Ozone_layer" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ozone shield", "xrefs" : [ "https://en.wikipedia.org/wiki/Ozone_layer" ] }, { "pred" : "hasRelatedSynonym", "val" : "ozone layer", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/5993" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000543", "lbl" : "atmospheric layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer that is part of the atmosphere." }, "comments" : [ "This could be made into an inferred class, rather than having asserted subclasses." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "atmospheric layering", "xrefs" : [ "GEMET:http://www.eionet.europa.eu/gemet/concept/627" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000544", "lbl" : "boundary layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.", "xrefs" : [ "https://en.wikipedia.org/wiki/Boundary_layer" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "boundary layer", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/976" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000545", "lbl" : "ionosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "The ionosphere is a layer of the Earth's atmosphere which extends from about 60 to 1,000 kilometers above the planetary surface and is ionised by solar radiation. It includes the thermosphere and parts of the mesosphere and exosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ionosphere" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ionosphere", "xrefs" : [ "GEMET:http://www.eionet.europa.eu/gemet/concept/4492" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000546", "lbl" : "exosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "The exosphere is an atmospheric layer where molecules are gravitationally bound to a planetary body, but where their density is too low for them to behave as a gas by colliding with each other. In the case of bodies with substantial atmospheres, such as Earth's atmosphere, the exosphere is the uppermost layer, where the atmosphere thins out and merges with interplanetary space. It is located directly above the thermosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000547", "lbl" : "glaze ice layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glaze ice layer is a smooth, transparent and homogeneous ice layer which coats some surface and which is formed when freezing rain or drizzle hits that surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Glaze_ice" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "glaze" }, { "pred" : "hasRelatedSynonym", "val" : "glaze" }, { "pred" : "hasRelatedSynonym", "val" : "glaze ice", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/12091" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000548", "lbl" : "eutrophic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which has nutrient-rich water." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000549", "lbl" : "mass of biological material", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000550", "lbl" : "composting toilet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A composting toilet fixture is a dry toilet fixture in which managed, aerobic decomposition converts human excreta into organic matter suitable for the fertilisation or amendment of soils.", "xrefs" : [ "https://en.wikipedia.org/wiki/Composting_toilet" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000551", "lbl" : "paraffin oil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fuel oil which is 1) composed primarily of alkanes having between 5-15 carbon atoms with the general formula CnH2n+2, 2) is generally odorless or has only a slight odor, 3) produces only small amounts of soot relative to other fuel oils, 4) is highly refined.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene", "https://www.differencebetween.com/difference-between-paraffin-and-kerosene/" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "paraffin" }, { "pred" : "hasExactSynonym", "val" : "liquid paraffin" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000552", "lbl" : "natural gas", "type" : "CLASS", "meta" : { "definition" : { "val" : "Natural gas is a hydrocarbon gas mixture consisting primarily of methane, but commonly includes varying amounts of other higher alkanes and sometimes a usually lesser percentage of carbon dioxide, nitrogen, and/or hydrogen sulfide. Natural gas is a fossil fuel formed when layers of buried plants and gases are exposed to intense heat and pressure over thousands of years.", "xrefs" : [ "https://en.wikipedia.org/wiki/Natural_gas" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000553", "lbl" : "liquefied petroleum gas", "type" : "CLASS", "meta" : { "definition" : { "val" : "Liquified petroleum gas or liquid petroleum gas (LPG or LP gas), also referred to as simply propane or butane, are flammable mixtures of hydrocarbon gases used as fuel in heating appliances, cooking equipment, and vehicles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Liquefied_petroleum_gas" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LP gas" }, { "pred" : "hasExactSynonym", "val" : "LPG" }, { "pred" : "hasExactSynonym", "val" : "liquid petroleum gas" }, { "pred" : "hasRelatedSynonym", "val" : "liquified natural gas" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000554", "lbl" : "hydrocarbon gas", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gas that is primarily composed of hydrocarbon molecules." }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000555", "lbl" : "compressed natural gas", "type" : "CLASS", "meta" : { "definition" : { "val" : "Compressed natural gas is a natural gas stored at high pressures, typically 20–25 Megapascals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Compressed_natural_gas" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000556", "lbl" : "biogas", "type" : "CLASS", "meta" : { "definition" : { "val" : "Biogas is a mixture of different gases produced by the breakdown of organic matter in the absence of oxygen, is primarily composed of methane and carbon dioxide, and may have small amounts of hydrogen sulfide, water, and siloxanes.", "xrefs" : [ "https://en.wikipedia.org/wiki/" ] }, "comments" : [ "This is distinct from natural gas which is a fossil fuel product." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000557", "lbl" : "liquefied natural gas", "type" : "CLASS", "meta" : { "definition" : { "val" : "Liquefied natural gas (LNG) is natural gas (predominantly methane, CH4) that has been converted to liquid form for ease of storage or transport. It takes up about 1/600th the volume of natural gas in the gaseous state. It is odorless, colorless, non-toxic and non-corrosive. LNG achieves a higher reduction in volume than compressed natural gas (CNG) so that the (volumetric) energy density of LNG is 2.4 times greater than that of CNG or 60 percent of that of diesel fuel.", "xrefs" : [ "https://en.wikipedia.org/wiki/Liquefied_natural_gas" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LNG" }, { "pred" : "hasExactSynonym", "val" : "liquified natural gas" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000558", "lbl" : "liquefied hydrocarbon gas", "type" : "CLASS", "meta" : { "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000559", "lbl" : "compressed biogas", "type" : "CLASS", "meta" : { "definition" : { "val" : "Compressed biogas is biogas stored at increased pressures." }, "comments" : [ "This is distinct from compressed natural gas, which refers to the compressed form of a fossil fuel." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000560", "lbl" : "charcoal", "type" : "CLASS", "meta" : { "definition" : { "val" : "Charcoal is a light, black residue, consisting of carbon and any remaining ash, obtained by removing water and other volatile constituents from animal and vegetation substances. Charcoal is usually produced by slow pyrolysis, the heating of wood or other substances in the absence of oxygen.", "xrefs" : [ "https://en.wikipedia.org/wiki/Charcoal" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000561", "lbl" : "paraffin lamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A paraffin lamp is a type of lighting device which burns paraffin to generate light and heat.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "kerosene lamp" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000562", "lbl" : "flat-wick lamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flat-wick lamp is a simple type of paraffin lamp, which burns paraffin drawn up through a wick by capillary action.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "flat wick lamp" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000563", "lbl" : "central-draught lamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A central-draught lamp is a paraffin lamp which burns a parrafin saturated, tubular wick contained between two structural tubes and supplied with oxygen by a central draught of air through the innermost of these tube.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Argand lamp" }, { "pred" : "hasExactSynonym", "val" : "central draught lamp" }, { "pred" : "hasExactSynonym", "val" : "tubular round wick lamp" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000564", "lbl" : "mantle lamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mantle lamp is a central-draught lamp which includes a pear-shaped, fabric mesh containing thorium or other rare-earth salts placed over the burner. On first use the fabric burns away and the rare-earth salts are converted to oxides, leaving a very fragile structure which incandesces (glows brightly) upon exposure to the heat of the burner flame.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000565", "lbl" : "lantern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lantern is a portable device or mounted fixture comprising a light source protected by a translucent case.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lantern" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000566", "lbl" : "lamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lamp is an object which generates heat, light, or any other form of radiation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lamp" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000567", "lbl" : "paraffin lantern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A paraffin lantern is a lantern which houses a parrafin lamp in a structure of soldered or crimped-together sheet metal stampings and glass or other translucent material.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "barn lantern" }, { "pred" : "hasExactSynonym", "val" : "hurricane lantern" }, { "pred" : "hasExactSynonym", "val" : "kerosene lantern" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000568", "lbl" : "tubular paraffin lantern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tubular paraffin lantern is a paraffin lantern which includes metal tubes in its casing that direct air to the burning wick.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000569", "lbl" : "dead flame paraffin lantern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dead-flame paraffin lantern is a paraffin lantern which has a wick housed in a glass globe with airflow channelled upwards by vents below the burning wick and an open chimney above it.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glass globe lantern" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000570", "lbl" : "hot-blast paraffin lantern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hot-blast paraffin lantern is a tubular paraffin lantern which collects hot air from the top of the lantern globe and circulates it, through metal tubes, to the burning wick.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000571", "lbl" : "cold-blast paraffin lantern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cold-blast paraffin lantern is a tubular paraffin lantern which collects cool air from around the top of the lantern globe and circulates it, through metal tubes, to the burning wick.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene_lantern" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000572", "lbl" : "electric lamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "An electric lamp is a lamp which produces light from electricity." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000573", "lbl" : "battery-powered electric lamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A battery-powered electric lamp is an electric lamp which draws its power from a device composed of two or more electrochemical cells that convert stored chemical energy into electrical energy.", "xrefs" : [ "https://en.wikipedia.org/wiki/Battery_(electricity)", "https://en.wikipedia.org/wiki/Lamp_(electrical_component)" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000574", "lbl" : "candle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A candle is a lamp composed of a wax within which an ignitable wick is embedded." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000575", "lbl" : "wax", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wax is an environmental material which is primarily composed of lipids or other organic compounds that consist of long alkyl chains. Waxes are are malleable near ambient temperatures and melt at approximately 45 degrees Celsius.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wax" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000576", "lbl" : "apiary", "type" : "CLASS", "meta" : { "definition" : { "val" : "An apiary is a place where beehives of honey bees are kept and maintained by beekeepers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Apiary" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000577", "lbl" : "radio device", "type" : "CLASS", "meta" : { "definition" : { "val" : "A device capable of receiving and/or transmitting information encoded in electromagnetic radiation through wave modulation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Radio" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "radio" }, { "pred" : "hasNarrowSynonym", "val" : "radio receiver" }, { "pred" : "hasNarrowSynonym", "val" : "radio transmitter" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000578", "lbl" : "cassette player", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cassette deck is a device capable of playing and recording audio compact cassettes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Compact_Cassette" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cassette deck" }, { "pred" : "hasRelatedSynonym", "val" : "cassette recorder" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000579", "lbl" : "television set", "type" : "CLASS", "meta" : { "definition" : { "val" : "A television set is a device that combines a tuner, display, and loudspeakers for the purpose of converting digital or analog information signals into moving images and sound.", "xrefs" : [ "https://en.wikipedia.org/wiki/Television_set" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "television" }, { "pred" : "hasExactSynonym", "val" : "TV" }, { "pred" : "hasExactSynonym", "val" : "telly" }, { "pred" : "hasExactSynonym", "val" : "tube" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000580", "lbl" : "telephone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A telephone is a telecommunications device which converts sound into electronic signals suitable for transmission via cables or other transmission media, and reconverts such signals into sound waves.", "xrefs" : [ "https://en.wikipedia.org/wiki/Telephone" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "phone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000581", "lbl" : "mobile phone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mobile phone is a telephone which transmits sound information to a mobile phone network via radio transmissions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Telephone" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cell phone" }, { "pred" : "hasExactSynonym", "val" : "cellular phone" }, { "pred" : "hasExactSynonym", "val" : "hand phone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000582", "lbl" : "landline telephone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A landline telephone is a telephone which is connected to a telephone network with wires through which electronic signals are carried.", "xrefs" : [ "https://en.wikipedia.org/wiki/Telephone" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000583", "lbl" : "refrigerator", "type" : "CLASS", "meta" : { "definition" : { "val" : "A refrigerator is a device which consists of a thermally insulated compartment and a mechanical, chemical, or electronic heat pump that transfers heat from the inside of the fridge to its external environment such that the inside of the fridge is cooled to a temperature below the ambient temperature of the room", "xrefs" : [ "https://en.wikipedia.org/wiki/Refrigerator" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fridge" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000584", "lbl" : "table", "type" : "CLASS", "meta" : { "definition" : { "val" : "A table is a form of furniture with a flat horizontal upper surface used to support objects, for storage, show, and/or manipulation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Table_(furniture)" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000585", "lbl" : "desk", "type" : "CLASS", "meta" : { "definition" : { "val" : "A desk is a table which is intended for information-manipulation tasks, including writing and use of interactive electronics.", "xrefs" : [ "https://en.wikipedia.org/wiki/Table_(furniture)" ] }, "comments" : [ "The intentional nature of this definition is problematic, but the restricted range of activities visited upon a desk is of interest." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000586", "lbl" : "chair", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chair is a piece of furniture with a raised surface commonly used to seat a single person." }, "comments" : [ "This class, along with benches, stools, and the like, can be grouped under \"seating furniture\" or similar. However, this is probably better as an inferred class using some sort of BFO:function in the subclass annotation." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000587", "lbl" : "piece of furniture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of furniture is a movable object intended to support various human activities such as seating (e.g., chairs, stools and sofas) and sleeping (e.g., beds).", "xrefs" : [ "https://en.wikipedia.org/wiki/Furniture" ] }, "comments" : [ "The assumption is that furniture is manufactured, which is arguable. Further, according to Black's Law Dictionary (http://thelawdictionary.org/furniture/) many classes can be subclasses of 'piece of furntiure': \"This term includes that which furnishes, or with which anything is furnished or supplied; whatever must be supplied to a house, a room, or the like, to make it habitable, convenient, or agreeable; goods, vessels, utensils, and other appendages necessary or convenient for housekeeping; whatever is added to the interior of a house or apartment, for use or convenience. Bell v. Holding, 27 Ind. 173.The term “furniture” embraces everything about the house that has been usually enjoyed there, including plate, linen, china, and pictures. 1 Endicott v. Endicott, 41N. J. Eq. 96, 3 Atl. 157.The word “furniture” made use of in the disposition of the law. or in the conventions or acts of persons, comprehends only such furniture as is intended for use and ornament of apartments, but not libraries which happen to be there, nor plate. Civ.Code La. art. 477.\" However, this would eventually be absurd and limit other groupings. Perhaps some sort of 'furnishing' BFO:function would be a better way to handle this." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000588", "lbl" : "sofa", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sofa is a bench which is partially or entirely upholstered, and often fitted with springs and tailored cushions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Couch" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "couch" }, { "pred" : "hasExactSynonym", "val" : "settee" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000589", "lbl" : "bench", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bench is a piece of furniture, on which several people may sit at the same time.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bench" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000590", "lbl" : "mattress", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mattress is a mass of material which is able to cushion and support a reclining body and is used as or on a bed.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mattress" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000591", "lbl" : "bed frame", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bed frame is a piece of furniture which is used to position a mattress and bed base and may include a means of supporting a canopy.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bed_frame" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "bedstead" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000592", "lbl" : "bed base", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bed base is a piece of furniture which supports a mattress." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bed foundation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000593", "lbl" : "framed bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A framed bed is a piece of furniture which is composed of a mattress supported by a bed base and held in place by a bed frame.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bed" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000594", "lbl" : "cabinet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cabinet is a roughly cuboidal piece of furniture which is used to store miscellaneous items in compartments accessible through doors or drawers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cabinetry" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000595", "lbl" : "cupboard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cupboard is a cabinet which is used indoors to store household objects such as food, crockery, textiles and liquor, and to protect them from dust and dirt", "xrefs" : [ "https://en.wikipedia.org/wiki/Cupboard" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "closet" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000596", "lbl" : "clock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A clock is an instrument which may indicate, keep, and/or co-ordinate time.", "xrefs" : [ "https://en.wikipedia.org/wiki/Clock" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "timepiece" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000597", "lbl" : "pressure lamp", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pressure lamp is a portable paraffin or oil lamp in which fuel is forced up into the mantle or burner by air pressure in the reservoir, which can be increased by pumping with a plunger." }, "comments" : [ "This may be a paraffin or an oil lamp. It can potentially be filled by inference if we can express that any lamp with pressurised fuel in the lamp reservoir is a pressure lamp. See Issue #228." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000598", "lbl" : "freshwater spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spring through which fresh water flows." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000599", "lbl" : "river water", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000600", "lbl" : "rainwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "Rainwater is liquid water which has precipitated in the form of droplets through the condensation of atmospheric water vapour.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rain" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000601", "lbl" : "motor vehicle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A motor vehicle is a vehicle which is propelled by an engine or motor and that does not operate on rails.", "xrefs" : [ "https://en.wikipedia.org/wiki/Motor_vehicle" ] }, "comments" : [ "Subclasses will be added by inference." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000602", "lbl" : "truck", "type" : "CLASS", "meta" : { "definition" : { "val" : "A truck is a motor vehicle which, as its primary funcion, transports cargo rather than human passangers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Truck" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lorry" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000603", "lbl" : "water truck", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water truck is a truck which transports water." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000604", "lbl" : "vehicle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vehicle is a mobile machine which transports people or cargo.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vehicle" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000605", "lbl" : "car", "type" : "CLASS", "meta" : { "definition" : { "val" : "A car is a wheeled motor vehicle used primarily for the transportation of human passengers. Most definitions of the term specify that cars are designed to run primarily on roads, to have seating for one to eight people, to typically have four wheels, and to be constructed principally for the transport of people rather than goods.", "xrefs" : [ "https://en.wikipedia.org/wiki/Car" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000606", "lbl" : "cart", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cart is a vehicle which has two wheels and is designed to transport human passengers or cargo.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cart" ] }, "comments" : [ "NB: \"[A cart]...is different from a dray or wagon, which is a heavy transport vehicle with four wheels and typically two or more horses, or a carriage, which is used exclusively for transporting humans...Over time, the term \"cart\" has come to mean nearly any small conveyance, from shopping carts to golf carts, without regard to number of wheels, load carried, or means of propulsion.\" https://en.wikipedia.org/wiki/Cart" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000607", "lbl" : "animal-drawn cart", "type" : "CLASS", "meta" : { "definition" : { "val" : "An animal-drawn cart is a cart which is attached to one or more working or draught animals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cart" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000608", "lbl" : "boat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A boat is a watercraft of any size which is able to float or plane on water." }, "comments" : [ "Difficult to distinguish from \"ships\". Similar to mountains and hills. \" In naval terms, a boat is a vessel small enough to be carried aboard another vessel (a ship). Another less restrictive definition is a vessel that can be lifted out of the water. Some definitions do not make a distinction in size, as bulk freighters 1,000 feet (300 m) long on the Great Lakes are called oreboats. For reasons of naval tradition, submarines are usually referred to as 'boats' rather than 'ships', regardless of their size and shape.\" - https://en.wikipedia.org/wiki/Boat" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000609", "lbl" : "motor boat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A motor boat is a boat which is propelled by a motor." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "motorised boat" }, { "pred" : "hasExactSynonym", "val" : "motorized boat" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000610", "lbl" : "motor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A motor is a machine designed to convert one or more forms of energy into mechanical energy.", "xrefs" : [ "https://en.wikipedia.org/wiki/Motor" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "engine" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000611", "lbl" : "bus", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bus is a road vehicle designed to carry many passengers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bus" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000612", "lbl" : "taxicab", "type" : "CLASS", "meta" : { "definition" : { "val" : "A taxicab is a car which may be hired, along with its operator, to transport passengers between locations of their choosing.", "xrefs" : [ "https://en.wikipedia.org/wiki/Taxicab" ] }, "comments" : [ "Depth can be added with specifications of BFO:role for both the car and the human operator." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cab" }, { "pred" : "hasExactSynonym", "val" : "taxi" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000613", "lbl" : "watercraft", "type" : "CLASS", "meta" : { "definition" : { "val" : "A watercraft is a vehicle which is able to travel on or through water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Watercraft" ] }, "comments" : [ "Ships, boats, hovercraft and submarines are all considered watercraft. The term would normally imply some propulsive capability (whether by sail, oar or engine) and hence is distinct from a simple device that merely floats, such as a log raft. - Wikipedia" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000614", "lbl" : "bicycle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bicycle is a human-powered, pedal-driven, single-track vehicle, having two wheels attached to a frame, one behind the other.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bicycle" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "bike" }, { "pred" : "hasBroadSynonym", "val" : "cycle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000615", "lbl" : "motorcycle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A motorcycle is a two- or three-wheeled motor vehicle.", "xrefs" : [ "https://en.wikipedia.org/wiki/Motorcycle" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "bike" }, { "pred" : "hasBroadSynonym", "val" : "cycle" }, { "pred" : "hasExactSynonym", "val" : "moto" }, { "pred" : "hasExactSynonym", "val" : "motorbike" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000616", "lbl" : "motorscooter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A scooter or motor scooter is a motorcycle with step-through frame and a platform for the rider's feet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Scooter_(motorcycle)" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "scooter" }, { "pred" : "hasExactSynonym", "val" : "motor scooter" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000617", "lbl" : "lentic water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lentic water body is a water body in which the accumulated water, in its totality, has very little to no directed flow." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000618", "lbl" : "lotic water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lotic water body is a water body in which the accumulated water, in its totality, is flowing." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000619", "lbl" : "closed ecological system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A closed ecological system is a vivarium which does not rely on matter exchange with any part outside the system.", "xrefs" : [ "https://en.wikipedia.org/wiki/Closed_ecological_system" ] }, "comments" : [ "This class refers to strictly sealed enclosures such as Biosphere 2 (https://en.wikipedia.org/wiki/Biosphere_2), rather than vivaria which allow matter exchange with external environmental systems." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000620", "lbl" : "mesocosm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesocosm is a vivarium that is embedded within a natural environment and is used to place a relatively small part of that environment under experimental control for the purposes of scientific investigation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mesocosm" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000621", "lbl" : "microcosm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A microcosm is a vivarium within which a simple ecosystem is artificially established and used to simulate and predict the behaviour of natural ecosystems under controlled conditions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Microcosm" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000622", "lbl" : "vaporisation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Vaporisation of an element or compound is process whereby that element or compound undergoes a phase transition from the liquid to vapor." }, "comments" : [ "Note that a vapor describes an element or compound in the gas phase at a temperature lower than its critical point," ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vaporization" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000623", "lbl" : "boiling", "type" : "CLASS", "meta" : { "definition" : { "val" : "Boiling is a form of vaporisation which occurs when a liquid is heated to a temperature at which the vapor pressure of the liquid is equal to the pressure exerted on the liquid by the surrounding environmental pressure.", "xrefs" : [ "https://en.wikipedia.org/wiki/Boiling" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000624", "lbl" : "hydrological condensation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.", "xrefs" : [ "https://en.wikipedia.org/wiki/Condensation" ] }, "comments" : [ "\"process\" is included in the label to make it clear that we are not referring to the condensed material (e.g. water droplets, window fog)" ], "subsets" : [ "\"envoAtmo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "condensation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000625", "lbl" : "manufactured cage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured structure made of interspaced structural elements such as metal or wooden bars or wires held together such that they may be used to confine, contain, or protect something.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cage_(enclosure)" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000626", "lbl" : "drylot", "type" : "CLASS", "meta" : { "definition" : { "val" : "A drylot is an enclosure of limited size usually bare of vegetation and used for fattening livestock.", "xrefs" : [ "URL:http://www.merriam-webster.com/dictionary/drylot" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000627", "lbl" : "feedlot", "type" : "CLASS", "meta" : { "definition" : { "val" : "A feedlot is a plot of land on which livestock are fattened for market", "xrefs" : [ "URL:http://www.merriam-webster.com/dictionary/feedlot" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000628", "lbl" : "plant litter", "type" : "CLASS", "meta" : { "definition" : { "val" : "Leaf litter is dead plant material, such as leaves, bark, needles, and twigs, that has fallen to the ground.", "xrefs" : [ "https://en.wikipedia.org/wiki/Plant_litter" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "duff" }, { "pred" : "hasExactSynonym", "val" : "leaf litter" }, { "pred" : "hasExactSynonym", "val" : "litterfall" }, { "pred" : "hasExactSynonym", "val" : "soil litter" }, { "pred" : "hasExactSynonym", "val" : "tree litter" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000629", "lbl" : "climate change", "type" : "CLASS", "meta" : { "definition" : { "val" : "The long-term fluctuations in temperature, precipitation, wind, and all other aspects of the Earth's climate. External processes, such as solar-irradiance variations, variations of the Earth's orbital parameters (eccentricity, precession, and inclination), lithosphere motions, and volcanic activity, are factors in climatic variation. Internal variations of the climate system, e.g., changes in the abundance of greenhouse gases, also may produce fluctuations of sufficient magnitude and variability to explain observed climate change through the feedback processes interrelating the components of the climate system.", "xrefs" : [ "GEMET:http://www.eionet.europa.eu/gemet/concept/1471" ] }, "comments" : [ "Definition vebatim from GEMET. Will need to be refined. Further, distinction between \"climate change\" and (one or many) \"climate change process\" will need to be discussed. Fluctuations are not processes, per se." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000630", "lbl" : "acidification of an aquatic environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Acidification of an aquatic environment is a process whereby the pH of an aquatic environment, biome, or water body is lowered." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000631", "lbl" : "ocean acidification", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ocean acidification is a process during which the pH of a sea or ocean is lowered." }, "comments" : [ "On Earth, the major cause of ocean acidification is the update of carbon dioxide from the atmosphere." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "LTER:962" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000632", "lbl" : "chonolith", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chonolith is an igneous rock intrusion of irregular shape with a demonstrable base, absent in other types of irregularly-shaped intrusions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Chonolith" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000633", "lbl" : "ecosystem-wide aerobic respiration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process which consists of all aerobic respiration processes instantiated in an ecosystem." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See issue #275" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000634", "lbl" : "volcanic eruption", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volcanic eruption is a process during which lava, tephra (ash, lapilli, volcanic bombs and blocks), and assorted gases are expelled from a volcanic vent or fissure.", "xrefs" : [ "https://en.wikipedia.org/wiki/Types_of_volcanic_eruptions" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000635", "lbl" : "planetary landmass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A landmass which is part of a planet.", "xrefs" : [ "Adpated from https://en.wikipedia.org/wiki/Planetary_surface" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "land" }, { "pred" : "hasRelatedSynonym", "val" : "ground" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000636", "lbl" : "liquid planetary surface", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "A liquid planetary surface is a planetary surface layer where a liquid material of a planet comes into contact with atmosphere or outer space.", "xrefs" : [ "https://en.wikipedia.org/wiki/Planetary_surface" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000637", "lbl" : "outer space", "type" : "CLASS", "meta" : { "definition" : { "val" : "Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.", "xrefs" : [ "https://en.wikipedia.org/wiki/Outer_space" ] }, "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "space" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000638", "lbl" : "planetary crust", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.", "xrefs" : [ "https://en.wikipedia.org/wiki/Crust_(geology)" ] }, "comments" : [ "This class is meant to be applicable accross planets. Earth's crust would be an instance." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "crust" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000639", "lbl" : "planetary structural layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary structural layer is laminar part of a terrestrial planet or other rocky body large enough to have differentiation by density. Planetary layers have differing physicochemical properties and composition." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Label should be improved to match definition." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000640", "lbl" : "planetary mantle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary mantle is a planetary layer which is an interior part of a terrestrial planet or other rocky body large enough to have differentiation by density.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mantle_(geology)" ] }, "comments" : [ "This class is meant to be applicable accross planets. Earth's mantle would be an instance." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "mantle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000641", "lbl" : "planetary core", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary core is the innermost structural layer or layers of a planet. The core may be entirely liquid, entirely solid, or have both liquid and solid parts.", "xrefs" : [ "https://en.wikipedia.org/wiki/Planetary_core" ] }, "comments" : [ "\"Not to be confused with planetary core in the core accretion theory, referring to a central accretionary body surrounded by a halo of dust and gas which serves to trap debris and increase the rate of accretion..\" WIkipedia:Planetary_core. This class is meant to be applicable accross planets. Earth's core would be an instance. The \"layer\" aspect of cores may be problematic." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "core" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000642", "lbl" : "outer planetary core", "type" : "CLASS", "meta" : { "comments" : [ "Needs a general definition that holds for Earth as well as other planets." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000643", "lbl" : "inner planetary core", "type" : "CLASS", "meta" : { "comments" : [ "Needs a general definition that holds for Earth as well as other planets." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000644", "lbl" : "liquid planetary core", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid planetary core is a planetary core which is primarily composed of liquid material." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000645", "lbl" : "solid planetary core", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid planetary core is a planetary core which is primarily composed of solid material." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000646", "lbl" : "lithosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lithosphere is the outermost shell of a terrestrial-type planet or natural satellite that is defined by its rigid mechanical properties.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lithosphere" ] }, "comments" : [ "Earth's lithosphere includes the crust and uppermost mantle." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000647", "lbl" : "asthenosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An asthenosphere is a layer of a terrestrial-type planet or natural satellite which is highly viscous, mechanically weak, and ductilely deforming.", "xrefs" : [ "https://en.wikipedia.org/wiki/Asthenosphere" ] }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000648", "lbl" : "magma", "type" : "CLASS", "meta" : { "definition" : { "val" : "Magma is a mixture of molten or semi-molten rock, volatiles, and solids that is found beneath the uppermost solid layer of a planetary body. Besides molten rock, magma may also contain suspended crystals, dissolved gas and sometimes gas bubbles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Magma" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000649", "lbl" : "trench", "type" : "CLASS", "meta" : { "definition" : { "val" : "A trench is a type of excavation or depression in the ground that is generally deeper than it is wide (as opposed to a wider gully or ditch), and narrow compared to its length (as opposed to a simple hole).", "xrefs" : [ "https://en.wikipedia.org/wiki/Trench" ] }, "xrefs" : [ { "val" : "EcoLexicon:trench" }, { "val" : "SWEETRealm:Trench" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000650", "lbl" : "stream channel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A channel of a watercourse which contains a stream." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000651", "lbl" : "ocean strait", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ocean strait is a strait which connects two oceans." }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000652", "lbl" : "river channel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stream channel which contains a river." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000653", "lbl" : "slum", "type" : "CLASS", "meta" : { "definition" : { "val" : "A slum is a heavily populated urban informal settlement with substandard housing in which households lack any one of the following: access to improved water, access to improved sanitation, sufficient-living area, durability of housing, or security of tenure.", "xrefs" : [ "URL:http://mdgs.un.org/unsd/mdg/Metadata.aspx?IndicatorId=0&SeriesId=711", "URL:http://www.communitascoalition.org/pdf/Communitas_SDSN_Indicators.pdf", "https://en.wikipedia.org/wiki/Slum" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000654", "lbl" : "undersea trough", "type" : "CLASS", "meta" : { "definition" : { "val" : "An undersea trough is a trough which is below a marine water body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Trough_%28geology%29" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "deep", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "deep", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "deep", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "foredeep", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "swale", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:1022" }, { "val" : "FTT:611" }, { "val" : "Geonames:U.DEPU" }, { "val" : "SWEETRealm:Trough" }, { "val" : "TGN:21512" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000655", "lbl" : "explosive eruption", "type" : "CLASS", "meta" : { "definition" : { "val" : "An explosive eruption is a volcanic process in which pressurised magma is violently expelled and froths into volcanic ash. Explosive eruptions can eject a cloud of rocks, dust, gas, and pyroclastic material which may then collapse, creating a pyroclastic flow of hot volcanic matter.", "xrefs" : [ "https://en.wikipedia.org/wiki/Explosive_eruption" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000656", "lbl" : "effusive eruption", "type" : "CLASS", "meta" : { "definition" : { "val" : "An effusive eruption is a volcanic eruption during which lava flows onto the ground.", "xrefs" : [ "https://en.wikipedia.org/wiki/Effusive_eruption" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000657", "lbl" : "igneous intrusion process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process whereby rising magma cools and solidifies without reaching the surface. Instead, the cooled and solidified igneous mass crystallises within the crust to form an igneous intrusion.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanism" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000658", "lbl" : "dense settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A settlement with a high density of buildings and inhabitants." }, "comments" : [ "The thresholds for what makes a settlment \"dense\" can be determined as needed. If there is a specific threshold that should be added to ENVO, please make a new class request." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See also: http://www.ecotope.org/anthromes/v1/guide/urban/12_dense_settlements/default.aspx" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000659", "lbl" : "igneous intrusion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An igneous intrusion is a mass of rock and minerals formed when magma cools, solidifies, and undergoes fractional crystallisation without reaching the surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanism" ] }, "comments" : [ "\"Intrusion\" can refer to the solidified mass or the molten rock." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Subclasses of this class will be created by inference." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000660", "lbl" : "tephra", "type" : "CLASS", "meta" : { "definition" : { "val" : "Tephra is fragmental material produced by a volcanic eruption regardless of composition, fragment size or emplacement mechanism.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tephra" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000661", "lbl" : "tuff", "type" : "CLASS", "meta" : { "definition" : { "val" : "Tuff is a type of rock made of volcanic ash ejected from a vent during a volcanic eruption.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tuff" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000662", "lbl" : "scoria", "type" : "CLASS", "meta" : { "definition" : { "val" : "Scoria is a highly vesicular, dark colored volcanic rock that may or may not contain crystals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Scoria" ] }, "comments" : [ "Scoria differs from pumice in having larger vesicles, thicker vesicle walls and being dark colored and denser." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cinder" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000663", "lbl" : "pumice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Pumice is a volcanic rock that consists of highly vesicular rough textured volcanic glass, which may or may not contain crystals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pumice" ] }, "comments" : [ "Scoria differs from pumice in having larger vesicles, thicker vesicle walls and being dark colored and denser." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000664", "lbl" : "tuff cone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cone that is composed of consolidated volcanic ash." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000665", "lbl" : "waste role", "type" : "CLASS", "meta" : { "definition" : { "val" : "A role that is realized in some process wherein the bearer is discarded or not utilized further." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This definition is preliminary." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000666", "lbl" : "area of open water", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily composed of water in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of open water generally have less than 25% cover of vegetation or soil. A specific threshold is not asserted in this definition." ], "subsets" : [ "\"envoPolar\"", "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:11" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "open water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000667", "lbl" : "geological fracture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geological fracture is any separation in a geologic formation, such as a joint or a fault that divides a mass of rock into two or more pieces.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fracture_(geology)" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "fracture" }, { "pred" : "hasRelatedSynonym", "val" : "fissure", "xrefs" : [ "Genomes:fissure" ] } ], "xrefs" : [ { "val" : "SWEETRealm:Fissure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000668", "lbl" : "geological fault", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geological fault is a planar fracture or discontinuity in a volume of rock, across which there has been significant displacement as a result of rock mass movement." }, "comments" : [ "The relationship between faults and active plate boundaries must be further developed, as there is some overlap." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "fault" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000669", "lbl" : "active geological fault", "type" : "CLASS", "meta" : { "definition" : { "val" : "An active fault is a fault that is likely to become the source of another earthquake sometime in the future. Geologists commonly consider faults to be active if there has been movement observed or evidence of seismic activity during the last 10,000 years." }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "active fault" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000670", "lbl" : "vein", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vein is a geological fracture which is filled with minerals precipitated out of an aqueous solution." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000671", "lbl" : "dike", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sheet of rock that formed in a fracture in a pre-existing rock body.", "xrefs" : [ "Adpated from https://en.wikipedia.org/wiki/Dike_(geology)" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dyke" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000672", "lbl" : "geological joint", "type" : "CLASS", "meta" : { "definition" : { "val" : "A joint is a geological fracture which has no measureable shear displacement" }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "joint" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000673", "lbl" : "shear fracture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geological fracture across which shear displacement has occurred" }, "comments" : [ "Sounds like this should be populated by inference." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000674", "lbl" : "microfracture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A microfracture is a small fracture which is found in a portion of solid material along which further fracturing tends to occur. Microfractures are considered imperfections which to pre-exist any fractures formed by the application of stress to a material." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Griffith crack" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000675", "lbl" : "atmospheric column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fiat part of an atmosphere which is defined as a vertical, three-dimensional pillar extending from a unit area on a planetary surface and bounded by the top of the atmosphere.", "xrefs" : [ "https://mynasadata.larc.nasa.gov/glossary/atmospheric-column-2/" ] }, "comments" : [ "Once defined, an atmospheric column can be used to quantify an atmospheric parameter such as pressure, ozone or precipitable water." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000676", "lbl" : "contaminated air", "type" : "CLASS", "meta" : { "definition" : { "val" : "Contaminated air is air which has sufficient concentrations of environmental pollutants such that it may adversely affect a given ecosystem." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000677", "lbl" : "earthquake", "type" : "CLASS", "meta" : { "definition" : { "val" : "An earthquake is a process during which energy is released in an astronomical body's crust, causing the displacement of crustal parts and the generation of seismic waves.", "xrefs" : [ "Adapted from URL:http://www.britannica.com/science/earthquake-geology", "https://en.wikipedia.org/wiki/Earthquake" ] }, "comments" : [ "Elastic strain, gravity, chemical reactions, or even the motion of massive bodies can produce earthquakes." ], "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "quake" }, { "pred" : "hasRelatedSynonym", "val" : "temblor" }, { "pred" : "hasRelatedSynonym", "val" : "tremor" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000678", "lbl" : "tectonic earthquake", "type" : "CLASS", "meta" : { "definition" : { "val" : "An earthquake caused by the sudden release of energy accumulated in an astronomical body's crust, as the elastic strain placed on constituent rock masses causes them to fracture.", "xrefs" : [ "URL:http://www.britannica.com/science/earthquake-geology" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000679", "lbl" : "megathrust earthquake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A megathrust earthquake is a tectonic earthquake which occurs at subduction zones at destructive plate boundaries (convergent boundaries). These interplate earthquakes are the planet's most powerful, with moment magnitudes that can exceed 9.0.", "xrefs" : [ "Adapted from URL:http://www.britannica.com/science/earthquake-geology", "https://en.wikipedia.org/wiki/Earthquake" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000680", "lbl" : "polluted lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which has concentrations of environmental contaminants high enough to harm the ecosystems associated with it." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000681", "lbl" : "sodium chloride salt", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral material composed primarily of sodium chloride." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "salt" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is for material primarily composed of sodium chloride. For other pure chemical salts, consider a CHEBI class. Request new ENVO terms for environmental samples of other chemical salts." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000682", "lbl" : "glacial abrasion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacial abrasion process is an erosional process during which debris in the basal ice scrapes along the bed, polishing and gouging the underlying rocks, similar to sandpaper on wood.", "xrefs" : [ "https://en.wikipedia.org/wiki/Erosion" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "abrasion" }, { "pred" : "hasBroadSynonym", "val" : "scouring" }, { "pred" : "hasExactSynonym", "val" : "glacial scouring" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000683", "lbl" : "glacial plucking", "type" : "CLASS", "meta" : { "definition" : { "val" : "Glacial plucking is an erosional process during which pieces of bedrock are cracked off due to the mechanical force of a moving glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Erosion" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "quarrying" }, { "pred" : "hasExactSynonym", "val" : "glacial quarrying" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000684", "lbl" : "glacial ice thrusting", "type" : "CLASS", "meta" : { "definition" : { "val" : "Glacial ice thrusting is an erosional process during which a moving glacier which has frozen to its bed surges forward and moves large sheets of sediment frozen to the glacial mass.", "xrefs" : [ "https://en.wikipedia.org/wiki/Erosion" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ice thrusting" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000685", "lbl" : "water mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of water." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000686", "lbl" : "marine water mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of marine water." }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000687", "lbl" : "coast", "type" : "CLASS", "meta" : { "definition" : { "val" : "A coast is the area where land meets the sea, ocean, or lake.", "xrefs" : [ "https://en.wikipedia.org/wiki/Coast" ] }, "comments" : [ "Used for both marine and lake coasts. The boundary of the coast is fuzzy and it overlaps both the water body and land in quesiton. Compared to 'shore'" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000688", "lbl" : "lake coast", "type" : "CLASS", "meta" : { "definition" : { "val" : "The general region of indefinite width that extends from a lake inland to the first major change in terrain features.", "xrefs" : [ "Adapted from USGS:SDTS" ] }, "comments" : [ "Usually reserved for large lakes." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000689", "lbl" : "tsunami", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tsunami is a process during which a series of waves is generated in a water body, typically an ocean or large lake, by the displacement of a large volume of water. Earthquakes, volcanic eruptions and other underwater explosions (including detonations of underwater nuclear devices), landslides, glacier calvings, meteorite impacts and other disturbances above or below water all have the potential to generate a tsunami.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tsunami" ] }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "seismic sea wave" }, { "pred" : "hasExactSynonym", "val" : "tidal wave" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000690", "lbl" : "mass wasting", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mass wasting is the geomorphic process by which solid environmental material such as soil, sand, regolith, and/or rock move downslope typically as a mass, largely under the force of gravity, but frequently affected by water and water content as in submarine environments and mudslides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mass_wasting" ] }, "comments" : [ "Of interest for future development: Some causes of mass wasting earthquakes, increased overburden from structures, increased soil moisture, reduction of roots holding the soil to bedrock, undercutting of the slope by excavation or erosion, weathering by frost heave, bioturbation, volcanic edifice over-steepening. Some processes that reduce mass wasting: Afforestation, Reforestation, Terracing steps on slopes (reduce angle of slope). https://en.wikipedia.org/wiki/Mass_wasting." ], "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "mass movement" }, { "pred" : "hasExactSynonym", "val" : "slope movement" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000691", "lbl" : "avalanche", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass wasting flow during which snow rapidly flows down a sloping surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mass_wasting" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "snowslide" }, { "pred" : "hasExactSynonym", "val" : "snowslip" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000692", "lbl" : "landslide process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A landslide is a process whereby a large mass of earth and rocks moves down a hill or a mountainside.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mass_wasting" ] }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "landslip" } ], "xrefs" : [ { "val" : "GEMET:http://www.eionet.europa.eu/gemet/concept/4668" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000693", "lbl" : "rockfall", "type" : "CLASS", "meta" : { "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000694", "lbl" : "geological subsidence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which a geological surface shifts downward relative to a datum such as sea-level.", "xrefs" : [ "https://en.wikipedia.org/wiki/Subsidence" ] }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "subsidence" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000695", "lbl" : "mudslide", "type" : "CLASS", "meta" : { "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000696", "lbl" : "mass wasting flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass wasting flow is a form of mass wasting during which the moving materials behave similarly to a flowing fluid. Water, air and ice are often involved in enabling fluidlike motion of the material.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mass_wasting" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "flow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000697", "lbl" : "mudflow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mudflow is a form of mass wasting which involves very rapid to extremely rapid surging flow of debris that has become partially or fully liquified by the addition of significant amounts of water to clay-rich source material.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mudflow" ] }, "comments" : [ "\"Mudflows are often called mudslides, a term applied indiscriminately by the mass media to a variety of mass wasting events. Mudflows often start as slides, becoming flows as water is entrained along the flow path; such events are often called flow slides.\" https://en.wikipedia.org/wiki/Mudflow" ], "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mud flow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000698", "lbl" : "debris flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass wasting flow during which water-laden masses of soil and fragmented rock rush down the slopes of elevations, funnel into stream channels, entrain objects in their paths, and form thick, muddy deposits on valley floors.", "xrefs" : [ "https://en.wikipedia.org/wiki/Debris_flow" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000699", "lbl" : "lahar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lahar is a type of mudflow or debris flow composed of a slurry of pyroclastic material, rocky debris, and water. The material flows down from a volcano, typically along a river valley.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lahar" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000700", "lbl" : "sturzstrom", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sturzstrom is a landslide consisting which has a great amount of kinetic energy resulting in greater horizontal movement when compared to its initial vertical drop — as much as 20 or 30 times the vertical distance. By contrast a normal landslide will typically travel a horizontal distance that is less than twice the distance that the material has fallen.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sturtzstrom" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000701", "lbl" : "volcanic ash", "type" : "CLASS", "meta" : { "definition" : { "val" : "Volcanic ash is an environmental material which consists of fragments of pulverized rock, minerals, and volcanic glass, created during volcanic eruptions and measuring less than 2 millimetres in diameter. Volcanic ash is formed during explosive volcanic eruptions, phreatomagmatic eruptions and during transport in pyroclastic density currents.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_ash" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000702", "lbl" : "ash fall process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ash fall process is a process in which volcanic ash formed during an explosive volcanic eruption, phreatomagmatic eruption, or during material transport in pyroclastic density currents is pulled towards the planetary surface by gravity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volcanic_ash" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000703", "lbl" : "hydrological precipitation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Precipitation" ] }, "comments" : [ "\"process\" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "precipitation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000704", "lbl" : "hydrological evaporation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hydrological evaporation is the evaporation of water, generally as part of a planetary water cycle." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000705", "lbl" : "soil degradation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil degradation is a process which results in a change in soil health status resulting in a diminished capacity of the ecosystem in which the soil occurs to provide goods and services for its beneficiaries.", "xrefs" : [ "FAO:http://www.fao.org/soils-portal/soil-degradation-restoration/en/" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000706", "lbl" : "soil erosion", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil erosion is a process in which exogenic processes remove soil from one location on the Earth's crust and transport it to another location where it is deposited." }, "comments" : [ "\"Soil Erosion is a common term that is often confused with soil degradation as a whole, but in fact refers only to absolute soil losses in terms of topsoil and nutrients. This is indeed the most visible effect of soil degradation, but does not cover all of its aspects. Soil erosion is a natural process in mountainous areas, but is often made much worse by poor management practices.\" http://www.fao.org/soils-portal/soil-degradation-restoration/en/" ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000707", "lbl" : "coastal flooding", "type" : "CLASS", "meta" : { "definition" : { "val" : "Coastal flooding is a process in which normally dry, low-lying land near a coast is flooded by sea water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Coastal_flood" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000708", "lbl" : "riverine flooding", "type" : "CLASS", "meta" : { "definition" : { "val" : "Riverine flooding is a process in which the flow rate of river water exceeds the capacity of its channel, thus flooding neighbouring land. Bends and meanders in a river channel are particularly disposed to such flooding.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flood#Riverine" ] }, "subsets" : [ "\"environmental_hazards\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A disposition class such as 'flooding disposition' may be interesting, especially when attached to things like meanders and bends." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000709", "lbl" : "flash flooding", "type" : "CLASS", "meta" : { "definition" : { "val" : "Flash flooding is a process in which low-lying land is inundated with water for a short period of time and are usually the result of precipitation or a breach in the container of a water body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flash_flood" ] }, "comments" : [ "Flash floods generally last no more than six hours. http://www.srh.noaa.gov/mrx/hydro/flooddef.php" ], "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000710", "lbl" : "flood", "type" : "CLASS", "meta" : { "definition" : { "val" : "An unusual accumulation of water above the ground caused by high tide, heavy rain, melting snow or rapid runoff from paved areas.", "xrefs" : [ "GEMET:http://www.eionet.europa.eu/gemet/concept/3298" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000711", "lbl" : "coastal flood", "type" : "CLASS", "meta" : { "definition" : { "val" : "A coastal flood is a flood which is formed as a result of large amounts of water from marine water bodies or large lakes being transported to usually dry land by displacement processes such as high winds or seismic activity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flood#Estuarine_and_coastal" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000712", "lbl" : "riverine flood", "type" : "CLASS", "meta" : { "definition" : { "val" : "A riverine flood is a flood which is formed as a result of a river's flow rate exceeding the capacity of its channel." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000713", "lbl" : "flash flood", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flash flood is a flood formed by the rapid flooding of geomorphic low-lying areas. It may be caused by heavy rain associated with a severe thunderstorm, hurricane, tropical storm, or meltwater from ice or snow flowing over ice sheets or snowfields. Flash floods may also occur after the collapse of a natural ice or debris dam, or a human structure such as a man-made dam. Flash floods are distinguished from a regular flood by a timescale of less than six hours.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flash_flood" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000714", "lbl" : "storm surge", "type" : "CLASS", "meta" : { "definition" : { "val" : "A storm surge is a coastal flood which is caused by low-pressure weather systems such as tropical cyclones and strong extratropical cyclones, the severity of which is affected by the shallowness and orientation of the water body relative to storm path, and the timing of tides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Storm_surge" ] }, "subsets" : [ "\"environmental_hazards\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Needs links to weather when these phenomena are added." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000715", "lbl" : "meteotsunami", "type" : "CLASS", "meta" : { "definition" : { "val" : "A meteotsunami is a tsunami caused by atmospheric processes and differences in air pressure.", "xrefs" : [ "https://en.wikipedia.org/wiki/Meteotsunami" ] }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "rissaga" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Ambiguity as to whether this label refers to the process or the material entities (the waves). The material entities are a type of severe storm surge." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000716", "lbl" : "storm surge process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A storm surge process is a coastal flooding process which is caused by low pressure weather systems such as tropical cyclones and strong extratropical cyclones, the severity of which is affected by the shallowness and orientation of the water body relative to storm path, and the timing of tides.", "xrefs" : [ "https://en.wikipedia.org/wiki/Storm_surge" ] }, "subsets" : [ "\"environmental_hazards\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Should be linked to the relevant weather classes when these are created." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000717", "lbl" : "areal flooding", "type" : "CLASS", "meta" : { "definition" : { "val" : "Areal flooding is a flooding process in which flat or low-lying areas become inundated with water due to water input exceeding infiltration, evaporation, or run off.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flood#Areal" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000718", "lbl" : "urban flooding", "type" : "CLASS", "meta" : { "definition" : { "val" : "Urban flooding is a flooding process in which land or property in a built environment, particularly in more densely populated areas, is inundated due to the rate of water input exceeding that of water drainage provided by the environment's drainage systems.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flood#Urban_flooding" ] }, "subsets" : [ "\"environmental_hazards\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Relevant to built environments and can be linked to urban flows. Also relevant to water and sanitation SDGs." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000719", "lbl" : "snowmelt", "type" : "CLASS", "meta" : { "definition" : { "val" : "Snowmelt is a hydrological melting process in which water is produced by the melting of snow and becomes part of the hydrological surface runoff.", "xrefs" : [ "https://en.wikipedia.org/wiki/Snowmelt" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The assertion that the output is freshwater seems reasonable; however, this can certianly be changed if a counter example is provided." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000720", "lbl" : "hydrological melting process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A melting process during which water-based ice, snow, or other solid phase water transitions into a liquid phase." }, "comments" : [ "Here, we've nexted melting within thawing as one approach to resolve the semantics of thawing of ice-free materials. Expert group revision is requried." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000721", "lbl" : "icemelt", "type" : "CLASS", "meta" : { "definition" : { "val" : "Icemelt is a hydrological melthing process in which water is produced by the melting of ice and becomes part of the hydrological surface runoff.", "xrefs" : [ "https://en.wikipedia.org/wiki/Meltwater" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ice melt" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The assertion that the output is freshwater seems reasonable; however, this can certianly be changed if a counter example is provided." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000722", "lbl" : "meltwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "Meltwater is the water released by the melting of snow or ice, including glacial ice, tabular icebergs and ice shelves over oceans.", "xrefs" : [ "https://en.wikipedia.org/wiki/Meltwater" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000723", "lbl" : "melting", "type" : "CLASS", "meta" : { "definition" : { "val" : "Melting is a material transformation process which results in the phase transition of a substance from a solid to a liquid.", "xrefs" : [ "https://en.wikipedia.org/wiki/Melting" ] }, "comments" : [ "Note that melting need not be due to warming, thus the classes are separated." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "melting process" }, { "pred" : "hasRelatedSynonym", "val" : "fusion" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "could replace with http://purl.obolibrary.org/obo/REX_0000177" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000724", "lbl" : "condensation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Condensation is a process during which a gas undergoes a phase transition into a liquid.", "xrefs" : [ "https://en.wikipedia.org/wiki/Condensation" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000725", "lbl" : "chemical precipitation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Chemical precipitation is a process in which a portion of some solid substance segregates from a material in which that substance or its precursors were dissolved in and settles due to a force such as gravity or centrifugal force. Segregation may occur due to the solubility limits of the precipitating substance being exceeded or due to a chemical reaction that forms a solid product from aqueous reagents.", "xrefs" : [ "https://en.wikipedia.org/wiki/Precipitation_(chemistry)" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000726", "lbl" : "desublimation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Desublimation is a process in which a portion of some gas undergoes a phase transition into a portion of some solid.", "xrefs" : [ "https://en.wikipedia.org/wiki/Deposition_(phase_transition)" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "deposition" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000727", "lbl" : "sublimation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sublimation is a process during which a portion of some solid undergoes a phase transition into a portion of some gas.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sublimation_(phase_transition)" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000728", "lbl" : "tectonic uplift process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tectonic uplift process is a geomorphologic process in which a geological surface shifts upward relative to a datum such as sea-level due to forces other than isostatic responses to unloading.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tectonic_uplift" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000729", "lbl" : "atmospheric subsidence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which a mass of air moves through an atmosphere towards a planetary surface.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Subsidence", "https://en.wikipedia.org/wiki/Subsidence_(atmosphere)" ] }, "comments" : [ "This process usually refers to large-scale air motion, rather than local winds." ], "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000730", "lbl" : "lava flow process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process in which a volume of lava emitted during an effusive eruption moves along a solid surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000731", "lbl" : "igneous extrusion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of igneous rock formed when hot magma flows out (extrudes) onto a planetary surface as lava or explodes violently into the atmosphere to fall back as pyroclastics or tuff.", "xrefs" : [ "https://en.wikipedia.org/wiki/Extrusive" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000732", "lbl" : "clastic dike", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dike formed when sediment fills a pre-existing fracture in a mass of rock." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "clastic dyke" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000733", "lbl" : "stock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stock is a discordant igneous intrusion having a surface exposure of less than 100 square kilometres. Stocks differ from batholiths only in being smaller." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Some assertion to indicate that stocks are smaller than batholiths should be made." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000734", "lbl" : "laccolith", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sheet intrusion (or concordant pluton) that has been injected between two layers of sedimentary rock. The pressure of the magma is high enough that the overlying strata are forced upward, giving the laccolith a dome or mushroom-like form with a generally planar base.", "xrefs" : [ "Adapated from https://en.wikipedia.org/wiki/Laccolith" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000735", "lbl" : "lopolith", "type" : "CLASS", "meta" : { "definition" : { "val" : "A large igneous intrusion which is lenticular in shape with a depressed central region.", "xrefs" : [ "Adapated from https://en.wikipedia.org/wiki/Lopolith" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000736", "lbl" : "phacolith", "type" : "CLASS", "meta" : { "definition" : { "val" : "A phacolith is an intrusion parallel to the bedding plane or foliation of folded country rock. More specifically, it is a typically lens-shaped intrusion that occupies either the crest of an anticline or the trough of a syncline.", "xrefs" : [ "Adapated from https://en.wikipedia.org/wiki/Phacolith" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000737", "lbl" : "sill", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tabular sheet intrusion that has intruded between older layers of sedimentary rock, beds of volcanic lava or tuff, or along the direction of foliation in metamorphic rock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sill_(geology)" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "concordant intrusive sheet" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000738", "lbl" : "rock-precursor intrusion process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process whereby the precursors of rock, such as magma or sedimentary particles, fill a fracture in a mass of rock." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000739", "lbl" : "habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which can sustain and allow the growth of an ecological population.", "xrefs" : [ "EnvO:EnvO" ] }, "comments" : [ "A habitat's specificity to an ecological population differentiates it from other environment classes." ], "xrefs" : [ { "val" : "EcoLexicon:habitat" }, { "val" : "LTER:238" }, { "val" : "SWEETRealm:Habitat" }, { "val" : "https://en.wikipedia.org/wiki/Habitat" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000740", "lbl" : "area of perennial water ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily composed of water ice, present throughout multiple years, in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "This class covers part of the NLCD \"Perennial Ice/Snow\" class." ], "subsets" : [ "\"envoPolar\"", "\"nlcd2011\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000741", "lbl" : "recycling process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which materials deemed as waste are separated and converted into a form which can be used as input by the same processes which generated them.", "xrefs" : [ "https://stats.oecd.org/glossary/detail.asp?ID=2260" ] }, "comments" : [ "This has been created for SDGIO. Revision is likely, but the general meaning should be stable. The frame of reference for determining what is 'waste' and what is a 'resource' is unclear." ], "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Recycling-Prozess" }, { "pred" : "hasExactSynonym", "val" : "proceso de reciclaje" }, { "pred" : "hasExactSynonym", "val" : "processo di riciclo" }, { "pred" : "hasExactSynonym", "val" : "資源回收" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000742", "lbl" : "carbon-bearing gas emission process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A carbon emission process is any environmental process which outputs a carbon-bearing gas." }, "comments" : [ "Requested for SDGIO. Likely to be revised." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "carbon emission process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000743", "lbl" : "land consumption process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process in which natural ecosystems present over an expanse of land are removed and replaced with anthropogenic ecosystems.", "xrefs" : [ "Adapted from EEA (1997) The concept of environmental space, Copenhagen, URL: http://www.eea.europa.eu/publications/92-9167-078-2/at_download/file" ] }, "comments" : [ "These anthropogenic ecosystems may include urban or other built-up settlements or anthropogenic ecosystems used for activities such as forestry or agriculture." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "An SDGIO request. Likely to be refined and revised. This looks like an aggregate class, subsuming a range of processes which can lead to degradation." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000744", "lbl" : "human dwelling", "type" : "CLASS", "meta" : { "definition" : { "val" : "A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dwelling accessed 11/25/2015" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See https://github.com/EnvironmentOntology/envo/issues/264 for discussion. This definition needs a lot of clean up and links to household and related classes must be made to form logical definitions for inference to work." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Subclasses will be added by inference." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000745", "lbl" : "area of perennial snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily composed of snow, present throughout multiple years, in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "This class covers part of the NLCD \"Perennial Ice/Snow\" class." ], "subsets" : [ "\"nlcd2011\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "envoPolar" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000746", "lbl" : "area of perennial ice or snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily composed of snow or water ice, present throughout multiple years, in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, these areas are characterised by ice and/or snow cover generally greater than 25% of total cover. The definition of perennial needs clarification." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:12" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "envoPolar" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "perennial ice/snow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000747", "lbl" : "regolith", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid layer which is composed primarily of loose, heterogeneous, superficial material covering solid rock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Regolith" ] }, "comments" : [ "Regolith typically includes dust, soil, broken rock, and similar materials, but can be highly variable." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The various parts of the regolith are highly variable. Perhaps some sort of \"unconsolidated\" quality should be used here with \"environmental material\" to cover this scope. Note that organisms, their parts, or their derivatives are also included." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000748", "lbl" : "continental crust", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of igneous, sedimentary, and metamorphic rocks that forms continents and the areas of shallow seabed close to their shores, known as continental shelves.", "xrefs" : [ "https://en.wikipedia.org/wiki/Crust_(geology)" ] }, "comments" : [ "On Earth, all continental crust ultimately derives from the fractional differentiation of oceanic crust over many eons." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is an Earth-centred class, but can be generalised to include other planetary bodies." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000749", "lbl" : "oceanic crust", "type" : "CLASS", "meta" : { "definition" : { "val" : "Oceanic crust is the uppermost layer of the oceanic portion of a tectonic plate.", "xrefs" : [ "https://en.wikipedia.org/wiki/Crust_(geology)" ] }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000750", "lbl" : "Mohorovicic discontinuity", "type" : "CLASS", "meta" : { "definition" : { "val" : "The Mohorovicic discontinuity, usually referred to as the Moho, is the boundary between the Earth's crust and the mantle, indicating a change in composition.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mohorovi%C4%8Di%C4%87_discontinuity" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Moho" }, { "pred" : "hasExactSynonym", "val" : "Mohorovičić discontinuity" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is and Earth-centred definition, but can likely be applied to other differentiated planetary bodies." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000751", "lbl" : "bedrock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lithified mass of rock that lies under the loose softer material (regolith) at the surface of the Earth or other terrestrial planet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bedrock" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000752", "lbl" : "area of barren land", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of barren land generally have less than 15% cover of vegetation. A specific threshold is not asserted in this definition." ], "subsets" : [ "\"envoPolar\"", "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:31" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The range of entities that are considered \"barren land\" are not exhaustive, making axiomatisation risky at this stage." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Barren Land (Rock/Sand/Clay)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000753", "lbl" : "obsolete air temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature that inheres in some portion of air.", "xrefs" : [ "URL:https://github.com/EnvironmentOntology/envo/issues/278" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Draft class. In discussion in Issue #278." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:09200001" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000754", "lbl" : "fumarole-derived ice tower", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hollow tower of ice formed by the freezing of steam escaping a fumarole." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ice chimney" }, { "pred" : "hasRelatedSynonym", "val" : "ice tower" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000755", "lbl" : "aeroform", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an astronomical body which is primarily composed of a continuous volume of gaseous or aerosolised material held in shape by one or more environmental processes." }, "comments" : [ "Similar, in spirit, to landform. This class may need to be split into aerosols and 'pure' volumes of gas." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This may not need to be in the atmosphere, also note that \"meteor\" will do much of the same work." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000756", "lbl" : "obsolete vegetable", "type" : "CLASS", "meta" : { "comments" : [ "According to the FAO definition, vegetables grown principally for animal feed or seed should be separated from those grown for human consumption. They both, however, fall under the label \"vegetable\"." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class represents a somewhat arbitrary grouping of plant products which varies along various axes (socio-political, economic, cultural, etc). It's likely we'll need to create more informative subclasses and use synonomy to tie them together." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FOODON:00001261" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000757", "lbl" : "obsolete fruit", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class represents a somewhat arbitrary grouping of plant products which varies along various axes (socio-political, economic, cultural, etc). It's likely we'll need to create more informative subclasses and use synonomy to tie them together." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FOODON:00001262" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000758", "lbl" : "obsolete nut", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class represents a somewhat arbitrary grouping of plant products which varies along various axes (socio-political, economic, cultural, etc). It's likely we'll need to create more informative subclasses and use synonomy to tie them together. The definition, too, requires greater refinement." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FOODON:00001263" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000759", "lbl" : "obsolete legume", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "FOODON:00001264" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000760", "lbl" : "cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud is a visible mass of aerosolised liquid droplets or frozen crystals suspended in an atmosphere above the surface of a planetary body.", "xrefs" : [ "https://cloudatlas.wmo.int/introduction-and-principles-of-cloud-classification.html", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "On Earth clouds are formed by the saturation of air in the homosphere when air cools or gains water vapor. Please use the \"water-based cloud\" class and its subclasses for Earth's clouds. Note that this class describes clouds as countable objects, rather than 'cloud material'. It also refers only to clouds made up of a water-based material." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cloud mass" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000761", "lbl" : "polar stratospheric cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "Polar stratospheric clouds are clouds which form in the winter polar stratosphere at altitudes of 15,000–25,000 metres and which support chemical reactions that produce active chlorine and remove gaseous nitric acid, catalysing ozone destruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Polar_stratospheric_cloud" ] }, "subsets" : [ "\"envoAtmo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nacreous cloud" }, { "pred" : "hasRelatedSynonym", "val" : "PSC" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class should be linked to ozone layer depletion processes." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000762", "lbl" : "sparsely populated settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A settlement with a low density of buildings and inhabitants." }, "comments" : [ "The thresholds for what makes a settlment \"sparsely populated\" can be determined as needed. These are usually \"sparse\" in relation to urban environments. If there is a specific threshold that should be added to ENVO, please make a new class request." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000763", "lbl" : "rural settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A settlement which has lower population density than a town, city, or other urban environment and is primarily used for agricultural or pastoral activity.", "xrefs" : [ "http://www.fao.org/docrep/015/am085e/am085e.pdf", "https://en.wikipedia.org/wiki/Rural_area" ] }, "comments" : [ "A class created fro SDGIO. The definition of rural is highly varied, dealing with areas, settlements, and populations interchangeably. The 'rural' classes in ENVO aim to clarify these differing definitions. See issue #272." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000764", "lbl" : "formal settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A settlement which has been established and is managed through officially sanctioned processes and is recognised as legal by a competent authority." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is merely a defined class and should not have too many subclasses." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000765", "lbl" : "informal settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A settlement which is not associated with or directed by official planning processes and which typically lacks municipal services and infrastructure such as sanitation, water services, and waste management services." }, "comments" : [ "Informal settlements need not be illegal." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Can a formerly formal settlement become an informal settlement?" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is merely a defined class and should not have too many subclasses." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000766", "lbl" : "legal settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A settlement on land that the inhabitants have a legal claim to." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is merely a defined class and should not have too many subclasses." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000767", "lbl" : "illegal settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A settlement on land that the inhabitants have no legal claim to or occupy illegally.", "xrefs" : [ "http://stats.oecd.org/glossary/detail.asp?ID=1351" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is merely a defined class and should not have too many subclasses." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000768", "lbl" : "primary forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "Forest which originally covered a region before changes in the environment brought about by people. (Source: PHC)", "xrefs" : [ "http://www.eionet.europa.eu/gemet/en/concept/6622" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000769", "lbl" : "carbon dioxide emission process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A carbon emission process is any environmental process which releases carbon dioxide gas into the atmosphere." }, "comments" : [ "Requested for SDGIO. This class may be revised in future once the offical definitions become more clear." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000770", "lbl" : "carbon dioxide emission", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volume of carbon dioxide gas emitted by a carbon dioxide emission process." }, "comments" : [ "This is a working definition for #280. Which processes will ultimately be included in the axioms is still open." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000771", "lbl" : "all season road", "type" : "CLASS", "meta" : { "definition" : { "val" : "A road which is usable across all seasons.", "xrefs" : [ "http://www.nationsencyclopedia.com/WorldStats/ADI-access-season-road-definition.html" ] }, "comments" : [ "Created for SDGIO, indicator 9.1.1. See #272." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "all-season road" }, { "pred" : "hasRelatedSynonym", "val" : "permanent road" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000772", "lbl" : "rural area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area which is outside of a town, city, or urban area. Rural areas are primarily used for agriculture or pastoralism and may contain rural settlements.", "xrefs" : [ "http://www.fao.org/docrep/015/am085e/am085e.pdf" ] }, "comments" : [ "A class created fro SDGIO. The definition of rural is highly varied, dealing with areas, settlements, and populations interchangeably. The 'rural' classes in ENVO aim to clarify these differing definitions. See issue #272." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000773", "lbl" : "village", "type" : "CLASS", "meta" : { "definition" : { "val" : "A village is a clustered human settlement or community, larger than a hamlet but smaller than a town, with a population ranging from a few hundred to a few thousand. Though often located in rural areas, the term urban village is also applied to certain urban neighbourhoods. Villages are normally permanent, with fixed dwellings; however, transient villages can occur. Further, the dwellings of a village are fairly close to one another, not scattered broadly over the landscape, as a dispersed settlement.", "xrefs" : [ "https://en.wikipedia.org/wiki/Village" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class may be split. \"urban village\" doesn't sit well and prevents relations to village biomes." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000774", "lbl" : "oligotrophic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which has nutrient-poor water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Trophic_state_index" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See issue #282" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000775", "lbl" : "mesotrophic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake with medium nutrient levels, which allow moderate productivity." }, "comments" : [ "What constitutes a \"medium\" nutrient level is subject to debate. The thresholds should be set either on a data level or through new subclasses." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See Issue #281." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000776", "lbl" : "piece of plastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of solid material which is primarily composed of plastic." }, "subsets" : [ "\"envoPlastics\"@es" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Plastikstück" }, { "pred" : "hasExactSynonym", "val" : "pedazo de plástico" }, { "pred" : "hasExactSynonym", "val" : "pezzo di plastica" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000777", "lbl" : "nurdle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plastic pellet which is produced such that its size allows it to be rapidly melted and used as input for further downstream manufacturing processes.", "xrefs" : [ "https://en.wiktionary.org/wiki/nurdle" ] }, "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000778", "lbl" : "key biodiversity area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone which contains, as determined by an officially mandated selection process, one or more ecosystems which include, as parts, ecological communities of global significance for conservation due to their vulnerability and irreplaceability.", "xrefs" : [ "http://www.iucn.org/about/union/secretariat/offices/iucnmed/iucn_med_programme/species/key_biodiversity_areas/", "https://en.wikipedia.org/wiki/Key_Biodiversity_Area" ] }, "comments" : [ "The selection process which determines the whether an area is an important site must follow the best practice specifications and guidelines developed by the International Union for Conservation of Nature (IUCN), using globally standardised criteria and thresholds. Note that the label 'important site' is chosen to align with SDGIO. The definition is that of \"key biodiversity area\"." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "Alliance for Zero Extinction Sites" }, { "pred" : "hasNarrowSynonym", "val" : "Ecologically and Biologically Significant Area" }, { "pred" : "hasNarrowSynonym", "val" : "IUCN Important Site for Freshwater Biodiversity" }, { "pred" : "hasNarrowSynonym", "val" : "Important Bird Area" }, { "pred" : "hasNarrowSynonym", "val" : "Important Mammal Area" }, { "pred" : "hasNarrowSynonym", "val" : "Important Plant Area" }, { "pred" : "hasNarrowSynonym", "val" : "Important Site for Freshwater Biodiversity" }, { "pred" : "hasNarrowSynonym", "val" : "Prime Butterfly Area" }, { "pred" : "hasNarrowSynonym", "val" : "Ramsar Sites" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The narrow synonyms will be made into subclasses in their own right." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "important site" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000779", "lbl" : "public infrastructure", "type" : "CLASS", "meta" : { "definition" : { "val" : "The system of public works in a country, state or region, including roads, utility lines and public buildings.", "xrefs" : [ "https://stats.oecd.org/glossary/detail.asp?ID=4511" ] }, "comments" : [ "We label this as 'public infrastructure', as the OECD definition refers specifically to public constructed features. The parts of public infrastructure are not exhaustive and should be extended as needed." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "infrastructure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000780", "lbl" : "public road", "type" : "CLASS", "meta" : { "definition" : { "val" : "A road which is publically accessible." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is created for the SDGIO and the 'public infrastructure' class. The publically accessible attribute could be axiomatised." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000781", "lbl" : "public building", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building which is publically accessible." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Created for SDGIO, we treat \"public\" as \"publically accessible\" where the semantics of access are dealt with in SDGIO." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000782", "lbl" : "utility line", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cable used to trasmit electricity from its point of production to its point of consumption." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000783", "lbl" : "public utility line", "type" : "CLASS", "meta" : { "definition" : { "val" : "A utility line which services the public power grid." }, "comments" : [ "Created for SDGIO, we treat \"public\" as \"publically accessible\" where the semantics of access are dealt with in SDGIO." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000784", "lbl" : "illegal informal settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A populated place where groups of housing units have been constructed on land that the occupants have no legal claim to, or occupy illegally, or where dwellings are not in compliance with current planning and building regulations.", "xrefs" : [ "unstats.un.org/unsd/publication/SeriesF/SeriesF_67E.pdf" ] }, "comments" : [ "Informal settlements may be urban or rural." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "informal settlement" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000785", "lbl" : "material extraction process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process during which a portion of environmental material is removed from a material entity." }, "comments" : [ "Created for SDGIO and intended to be a more general form of resource extraction process." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000786", "lbl" : "fire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fire is a process whereby rapid and exothermic oxidation of a material through a combustion process releases heat, light, and other products.", "xrefs" : [ "http://www.eionet.europa.eu/gemet/en/concept/3212", "https://en.wikipedia.org/wiki/Fire" ] }, "comments" : [ "Not to be confused with a flame - the visible portion of gas released by a fire . Oxidation processes such as rusting or biological digestion are not subsumed here." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000787", "lbl" : "wildfire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A conflagration which is uncontrolled and combusts material in a vegetated area, be it rural or wild." }, "comments" : [ "The definition of \"wildland\" or \"wild\" is ambiguous." ], "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "wildland fire" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000788", "lbl" : "conflagration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fire which occurs in a large spatial area poses a risk to human life, animal life, health, and/or property.", "xrefs" : [ "https://en.wikipedia.org/wiki/Conflagration" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "blaze" }, { "pred" : "hasRelatedSynonym", "val" : "large fire" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000789", "lbl" : "flame", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of gas which is emitted by a fire or other exothermic reaction, is of increased temperature, and typically emits light in the visible range.", "xrefs" : [ "https://en.wikipedia.org/wiki/Flame" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000790", "lbl" : "hydrocarbon flame", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flame which is produced by the combustion of hydrocarbon fuel." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000791", "lbl" : "forest fire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wildfire which occurs in a forest, primarily consuming vegetation as fuel.", "xrefs" : [ "http://www.emdat.be/Glossary" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000792", "lbl" : "mass gaseous flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process whereby a large volume of gas moves due to a disequilibrium of physical forces.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wind" ] }, "comments" : [ "This class refers to all forms of \"wind\": from the familiar movement of air in the Earth's atmosphere to the solar wind. Use a subclass to be more precise." ], "subsets" : [ "\"envoAtmo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "wind" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000793", "lbl" : "atmospheric wind", "type" : "CLASS", "meta" : { "subsets" : [ "\"envoAtmo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "wind" }, { "pred" : "hasRelatedSynonym", "val" : "A mass gaseous flow which occurrs in a planet's atmosphere due to internal pressure disequilibria.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wind" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000794", "lbl" : "stellar wind", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stream of plasma primarily composed of electrons, protons, and alpha particles ejected from the upper atmosphere of a star.", "xrefs" : [ "https://en.wikipedia.org/wiki/Solar_wind", "https://en.wikipedia.org/wiki/Wind" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Solar wind" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000795", "lbl" : "planetary wind", "type" : "CLASS", "meta" : { "subsets" : [ "\"envoAtmo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "A mass gaseous flow in which planetary atmospheric gases flow into outer space." }, { "pred" : "hasRelatedSynonym", "val" : "atmospheric escape" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000796", "lbl" : "mass plasma flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process whereby a large volume of plasma moves due to a disequilibrium of physical forces." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000797", "lbl" : "gaseous environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.", "xrefs" : [ "http://www.merriam-webster.com/dictionary/gas" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "gas" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is to be populated by inference." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000798", "lbl" : "plasma", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity which is composed of a volume of unbound positive and negative particles in roughly equal numbers, conducts electricity, and possesses internal magnetic fields.", "xrefs" : [ "http://www.merriam-webster.com/dictionary/plasma", "https://en.wikipedia.org/wiki/Plasma_%28physics%29" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "An NTR for `quality of a plasma` has been posted on the PATO tracker: https://github.com/pato-ontology/pato/issues/88" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000799", "lbl" : "astronomical body", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.", "xrefs" : [ "https://en.wikipedia.org/wiki/Astronomical_object" ] }, "comments" : [ "Astronomical bodies are usually cohesive, thus the use of the term 'object' sensu BFO 'object'." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "celestial body" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000800", "lbl" : "planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.", "xrefs" : [ "http://solarsystem.nasa.gov/planets/whatisaplanet", "https://en.wikipedia.org/wiki/Planet" ] }, "comments" : [ "Considerable debate on the definition of planet exists." ], "subsets" : [ "\"envoAstro\"", "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000802", "lbl" : "planetary moon", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body which orbits a planet of comparatively greater mass.", "xrefs" : [ "http://solarsystem.nasa.gov/planets/solarsystem/sats", "https://en.wikipedia.org/wiki/Natural_satellite" ] }, "comments" : [ "At times, a moon is equated to a natural satellite, however, the latter class includes a broader range of entities. Here, we currently separate moons from other satellites. We can create a logical definition of satellite using an orbital process class." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "moon" }, { "pred" : "hasRelatedSynonym", "val" : "natural satellite" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000803", "lbl" : "asteroid", "type" : "CLASS", "meta" : { "comments" : [ "This class is hard to define and is sometimes treated as equivalent to 'minor planet'." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000804", "lbl" : "astronomical object", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object which is composed of one or more gravitationally bound structures that are associated with a position in space.", "xrefs" : [ "https://en.wikipedia.org/wiki/Astronomical_object" ] }, "comments" : [ "If there is only one astronomical body involved, this class is equivalent to ENVO:01000799. This may be problematic with reasoning, but it seems to be true to the rather fuzzy definitions found thus far." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "celestial object" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000805", "lbl" : "globular star cluster", "type" : "CLASS", "meta" : { "definition" : { "val" : "A group of gravitationally bound stars.", "xrefs" : [ "https://en.wikipedia.org/wiki/Star_cluster" ] }, "comments" : [ "There is a need to account for open star clusters which are not gravitationally bound. This would need a superclass other than 'astronomical object', as currently defined." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000806", "lbl" : "nebula", "type" : "CLASS", "meta" : { "definition" : { "val" : "An interstellar cloud of dust, hydrogen, helium and other ionized gases", "xrefs" : [ "https://en.wikipedia.org/wiki/Nebula" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000807", "lbl" : "galaxy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A galaxy is a gravitationally bound system of stars, stellar remnants, interstellar gas, dust, and dark matter.", "xrefs" : [ "https://en.wikipedia.org/wiki/Galaxy" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000808", "lbl" : "dwarf planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body which is in direct orbit of a star and is massive enough for its own gravity to compress it into a shape preserved by hydrostatic equilibrium (usually a spheroid), but which shares its orbit with other bodies, such as asteroids or comets.", "xrefs" : [ "http://solarsystem.nasa.gov/planets/Dwarf", "https://en.wikipedia.org/wiki/Dwarf_planet" ] }, "comments" : [ "Considerable debate on this definition exists." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000809", "lbl" : "minor planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A minor planet is an astronomical object in direct orbit around the Sun that is neither a planet nor exclusively classified as a comet. Minor planets can be dwarf planets, asteroids, trojans, centaurs, Kuiper belt objects, and other trans-Neptunian objects.", "xrefs" : [ "https://en.wikipedia.org/wiki/Minor_planet" ] }, "comments" : [ "\"Before 2006, the IAU had officially used the term minor planet. During its 2006 meeting, the IAU reclassified minor planets and comets into dwarf planets and small Solar System bodies (SSSB). Objects are called dwarf planets if their self-gravity is sufficient to achieve hydrostatic equilibrium and form an ellipsoidal shape. All other minor planets and comets are called small Solar System bodies. The IAU stated that the term minor planet may still be used, but the term small Solar System body will be preferred. However, for purposes of numbering and naming, the traditional distinction between minor planet and comet is still used.\"" ], "subsets" : [ "\"envoAstro\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This definition is in need of revision - it relies on negation and seems to straddle class and instance level. The definitional space here is contested and quite inhomogeneous." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000810", "lbl" : "planetary atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmosphere which surrounds a planet." }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000811", "lbl" : "nitrogen-oxygen planetary atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary atmosphere which is composted primarily of dinitrogen and dioxygen gas." }, "comments" : [ "An instance of this class would be Earth's atmosphere." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000812", "lbl" : "desert pavement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A desert surface covered with closely packed, interlocking angular or rounded rock fragments of pebble and cobble size.", "xrefs" : [ "https://en.wikipedia.org/wiki/Desert_pavement" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gibber" }, { "pred" : "hasExactSynonym", "val" : "reg" }, { "pred" : "hasExactSynonym", "val" : "saï" }, { "pred" : "hasExactSynonym", "val" : "serir" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000813", "lbl" : "astronomical body part", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material part of an astronomical body." }, "comments" : [ "Material parts of astronomical bodies generally have boundaries formed by discontinuities in qualities, composition, or other physical characterisitcs. These boundaries are sometimes sharp, and sometimes diffuse, with different classification systems and communities declaring varying thresholds (e.g. for where a shoreline, forest, or other entity begins and ends). However, some boundaries are declared by fiat - that is, by arbitrary human convention or decree - particularly by regulatory or other authorities and communities of practice. The classes in this hierarchy attempt to offer generalisable definitions that allow multiple classfiication systems to map to and interoperate through. If desired, we can create classes that declare thresholds used by a given authority or community under the more generic ones, annotated with source information." ], "subsets" : [ "\"envoAstro\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Also note that some astronomical body parts (ABPs) may have fiat boundaries: if there's strong debate about where an ABP begins or ends (over and above fuzzy boundaries), with different official classifications setting different thresholds or limits, axiomatise the class with fiat boundaries of the appropriate dimension." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Note that material entities may have immaterial entities (e.g. sites) as parts." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class includes material parts of astronomical bodies. Immaterial parts, such as magnetospheres, are represented as sites under the influence of magnetic fields.Please post countercases in the ENVO tracker for revision of this hierarchy if needed." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000814", "lbl" : "solid environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is in a solid state." }, "comments" : [ "This is a defined class: its subclasses will not be asserted, but filled by inference." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000815", "lbl" : "liquid environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is in a liquid state." }, "comments" : [ "This is a defined class: most of its subclasses will not be asserted, but filled by inference." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000816", "lbl" : "area of deciduous forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by a forest in which the majority of trees shed foliage simultaneously in response to seasonal change. The surfaces of this area (including the surface of the forest canopy) are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of deciduous forest are dominated by trees generally greater than 5 meters tall, and making up more than 20% of total vegetation cover. The NLCD 2011 continues to state that more than 75% of these trees should shed foliage simultaneously in response to seasonal change. Such thresholds - which are themselves fuzzy - are not asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:41" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "deciduous forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000817", "lbl" : "biosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body part which includes all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.", "xrefs" : [ "http://www.biology-online.org/dictionary/Biosphere", "https://en.wikipedia.org/wiki/Biosphere" ] }, "comments" : [ "The gravitational sphere of influence referenced in this class' definition is the Hill sphere: a region in which an object dominates the attraction of satellites despite gravitational perturbations." ], "subsets" : [ "\"envoAstro\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Whether this class should be grouped with classes such as \"hydrosphere\" and \"cryosphere\" requires some discussion." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000818", "lbl" : "obsolete cryosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cryosphere is that part of a planet which is primarily composed of water is in solid form.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cryosphere" ] }, "comments" : [ "This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "obsolete this term. Replace by new term for planetary cryosphere." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:03000144" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000819", "lbl" : "hydrosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hydrosphere" ] }, "comments" : [ "This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class." ], "subsets" : [ "\"envoAstro\"", "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000820", "lbl" : "pedosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body part which is composed of soil, subject to soil formation processes, and found on the surface of a lithosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pedosphere" ] }, "comments" : [ "This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000821", "lbl" : "photosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body part which is composed of those parts of a star, distal from the star's core, from which light is radiated into space.", "xrefs" : [ "https://en.wikipedia.org/wiki/Photosphere" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000822", "lbl" : "planetary photic zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary part which is exposed, at least periodically, to light.", "xrefs" : [ "http://dx.doi.org/10.1126/science.1155495" ] }, "comments" : [ "In some literature, the term photosphere is used; however, this is more correctly reserved for a part of a star." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "photosphere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000823", "lbl" : "illuminated biosphere part", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body part which includes those parts of a biosphere that are, at least periodically, illuminated and in which photosynthesis may occur.", "xrefs" : [ "http://dx.doi.org/10.1126/science.1155495" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Somewhat awkward at the moment, see #314." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000824", "lbl" : "exorheic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake from which water constantly flows out of under almost all climatic circumstances, maintaining low concentrations of dissolved solid relative to endorheic lakes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Open_and_closed_lakes" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "open lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000825", "lbl" : "eaves", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of a building roof which overhangs the face of a wall and, normally, projects beyond the side of a building.", "xrefs" : [ "https://en.wikipedia.org/wiki/Eaves" ] }, "comments" : [ "The primary function of the eaves is to keep rain water off the walls and to prevent the ingress of water at the junction where the roof meets the wall. The secondary function is to control solar penetration; the eaves overhang can be designed to adjust the building's solar heat gain to suit the local climate, the latitude and orientation of the building, refer to passive solar building design. The eaves overhang may also shelter openings to ventilate the roof space." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000826", "lbl" : "open eaves", "type" : "CLASS", "meta" : { "definition" : { "val" : "Overhanging eaves where the rafters and underside of the roof are visible from below.", "xrefs" : [ "ISBN:978-0-07-145237-3", "http://encyclopedia2.thefreedictionary.com/Open+eaves" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000827", "lbl" : "closed eaves", "type" : "CLASS", "meta" : { "definition" : { "val" : "Eaves in which projecting roof members are not visible, being closed from view by boarding.", "xrefs" : [ "ISBN:978-0-07-145237-3", "http://encyclopedia2.thefreedictionary.com/Closed+eaves" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000828", "lbl" : "humid air", "type" : "CLASS", "meta" : { "definition" : { "val" : "Air which has increased levels of water vapour." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000829", "lbl" : "water vapour saturated air", "type" : "CLASS", "meta" : { "definition" : { "val" : "Air which has a partial pressure of water vapour equal or near equal to its equilibrium vapor pressure at a given temperature." }, "comments" : [ "\"Near equal\" is meant to reflect that there will be fluctuations around the equilibrium point." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "water-vapour-saturated air" }, { "pred" : "hasRelatedSynonym", "val" : "wet air" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000830", "lbl" : "water-based rainfall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydrological precipitation process in which atmospheric water vapour condenses to form droplets of liquid water massive enough to fall to a planetary surface due to the planet's gravity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rain" ] }, "comments" : [ "This is the process which typically happens on Earth. Other planets may have different liquids involved in the process." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "rain fall" }, { "pred" : "hasBroadSynonym", "val" : "rainfall" }, { "pred" : "hasRelatedSynonym", "val" : "rain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000831", "lbl" : "droplet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A droplet is a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid.", "xrefs" : [ "https://en.wikipedia.org/wiki/Drop_%28liquid%29" ] }, "comments" : [ "No attempt is made to differentiate between drops and droplets. This may be added, if requested." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "drop" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000832", "lbl" : "raindrop", "type" : "CLASS", "meta" : { "definition" : { "val" : "A droplet formed by condensation of vapour in an atmosphere and which is sufficiently massive to overcome atmospheric resistance and fall to a planetary surface due to gravity." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000833", "lbl" : "water droplet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A droplet of water" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A defined class which should be filled by inference." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000834", "lbl" : "water raindrop", "type" : "CLASS", "meta" : { "comments" : [ "This is the class intended for use when describing raindrops on Earth. These typically have a diamter of 0.1 to 9 millimetres." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "raindrop" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000835", "lbl" : "cloud droplet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A droplet which is spherical in shape and suspended in an atmosphere, being of too small a mass to be pulled to a planetary surface by gravity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rain" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000836", "lbl" : "water-based cloud droplet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud droplet composed primarily of water." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cloud drop" }, { "pred" : "hasBroadSynonym", "val" : "cloud droplet" }, { "pred" : "hasExactSynonym", "val" : "water based cloud droplet" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000837", "lbl" : "virga", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "A process in which precipitation falls from a cloud but evaporates or sublimes before making contact with a planetary surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rain" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000838", "lbl" : "smoke", "type" : "CLASS", "meta" : { "comments" : [ "Smoke is a collection of airborne solid and liquid particulates and gases emitted when a material undergoes combustion or pyrolysis, together with the quantity of gas that is entrained or otherwise mixed into the mass" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000839", "lbl" : "combustion process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Combustion or burning is a high-temperature exothermic redox chemical reaction between a fuel and an oxidant that produces oxidized, often gaseous products, in a mixture termed as smoke.", "xrefs" : [ "https://en.wikipedia.org/wiki/Combustion" ] }, "comments" : [ "Unlike the \"combustion\" class in the Chemical Methods Ontology, this class is not necessarily a planned process. http://purl.obolibrary.org/obo/CHMO_0001473" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class may be surrendered to REX." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000840", "lbl" : "thermolysis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chemical decomposition (the separation of a single chemical compound into its two or more elemental parts or to simpler compounds) caused by heat." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "thermal decomposition" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000841", "lbl" : "pyrolysis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thermolysis process in which organic material is decomposed in the absence of oxygen." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000842", "lbl" : "smog", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fog which is intermixed with smoke or other combustion products and their derivatives." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000843", "lbl" : "area of evergreen forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by a forest in which the majority of trees maintain their foliage despite seasonal change. The surfaces of this area (including the surface of the forest canopy) are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of evergreen forest are dominated by trees generally greater than 5 meters tall, and making up more than 20% of total vegetation cover. The NLCD 2011 continues to state that more than 75% of these trees should maintain their foliage despite seasonal change - the canopy is never without green foliage. Such thresholds - which are themselves fuzzy - are not asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:42" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "evergreen forest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000844", "lbl" : "fog", "type" : "CLASS", "meta" : { "definition" : { "val" : "A visible mass of cloud water droplets or ice crystals suspended in the air at or near the surface of an astronomical body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fog" ] }, "comments" : [ "Fog is more opaque than mist, reducing visibility to under one kilometre. This class refers only to fog formed by materials primarily composed of water. \"Fog can be considered a type of low-lying cloud and is heavily influenced by nearby bodies of water, topography, and wind conditions. In turn, fog has affected many human activities, such as shipping, travel, and warfare.\" https://en.wikipedia.org/wiki/Fog" ], "subsets" : [ "\"envoCryo\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "haar" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000845", "lbl" : "crystal", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid material whose constituents, such as atoms, molecules or ions, are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Crystal" ] }, "comments" : [ "This class refers to a portion of crystal and not an individual crystal." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000846", "lbl" : "water ice crystal", "type" : "CLASS", "meta" : { "definition" : { "val" : "A crystal which is primarily composed of water ice." }, "comments" : [ "Any one of a number of macroscopic, crystalline forms in which ice appears, including hexagonal columns, hexagonal platelets, dendritic crystals, ice needles, and combinations of these forms. The crystal lattice of ice is hexagonal in its symmetry under most atmospheric conditions." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ice crystal" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000847", "lbl" : "hair ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "A type of water ice that forms on dead wood with the assistance of the fungus Exidiopsis effusa and takes the shape of fine, silky hair.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hair_ice" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "frost beard" }, { "pred" : "hasExactSynonym", "val" : "ice wool" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add quality like filamentous from PATO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000848", "lbl" : "flower strip", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vegetated area which includes a community of flowering plants that provide food for local pollinators.", "xrefs" : [ "http://dx.doi.org/10.1111/1365-2664.12605" ] }, "comments" : [ "Flower strips are often the last refuge organsims whose habitats have been replaced by croplands, urban areas, and othe anthropogenic environments. This has considerable consequences for pollination and other ecosystem services." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This may or may not be an anthropogenic environment, but its boundaries are maintained by human activity." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000849", "lbl" : "flower-rich field margin strip", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flower strip which is present at the margins of cultivated fields.", "xrefs" : [ "http://dx.doi.org/10.1111/1365-2664.12605" ] }, "comments" : [ "Flower strips are often the last refuge organsims whose habitats have been replaced by croplands, urban areas, and othe anthropogenic environments. This has considerable consequences for pollination and other ecosystem services." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000850", "lbl" : "clathrate material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material which is primarily composed of a substance arranged as a lattice which can trap or contain other molecules.", "xrefs" : [ "https://en.wikipedia.org/wiki/Clathrate_compound" ] }, "comments" : [ "This class is not to be confused with CHEBI's \"clathrate\". The latter refers to the pure substance, while this class refers to clathrates found in nature.\n\"Traditionally, clathrate compounds are polymeric and completely envelop the guest molecule, but in modern usage clathrates also include host-guest complexes and inclusion compounds.\" https://en.wikipedia.org/wiki/Clathrate_compound" ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "clathrate compound material" }, { "pred" : "hasExactSynonym", "val" : "clathrate crystal material" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Not sure if this should be a subclass of crystal. If it is removed, remember to assert that it is a solid." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000851", "lbl" : "methane clathrate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A clathrate material in which a large amount of methane is trapped within a crystal structure of water, forming a solid similar to ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Methane_clathrate" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fire ice" }, { "pred" : "hasExactSynonym", "val" : "gas hydrate" }, { "pred" : "hasExactSynonym", "val" : "hydromethane" }, { "pred" : "hasExactSynonym", "val" : "methane hydrate" }, { "pred" : "hasExactSynonym", "val" : "methane ice" }, { "pred" : "hasExactSynonym", "val" : "natural gas hydrate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000852", "lbl" : "coral bleaching process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental process in which coral expels the symbiotic algae living in its tissue as a result of stress, causing the coral to turn white.", "xrefs" : [ "http://oceanservice.noaa.gov/facts/coral_bleach.html" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "coral bleaching" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add relations to coral organisms in NCBI taxonomy." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "orcid.org/0000-0001-8369-8114" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000853", "lbl" : "marl", "type" : "CLASS", "meta" : { "definition" : { "val" : "Marl is a mass of calcium carbonate derived from mollusk shells and mixed with silt and clay.", "xrefs" : [ "http://corn.agronomy.wisc.edu/Management/pdfs/a3671.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A request from the Agronomy Ontology in Issue #345." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000854", "lbl" : "tropical marine coral reef biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine coral reef biome which is located in a region with a tropical climate." }, "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000855", "lbl" : "area of mixed forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by a forest in which the trees are a mixture between those that lose and retain their foliage despite seasonal change. The surfaces of this area (including the surface of the forest canopy) are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of mixed forest are dominated by trees generally greater than 5 meters tall, and making up more than 20% of total vegetation cover. The NLCD 2011 continues to state that neither deciduous or evergreen trees make up more than 75% of the total tree cover. Such thresholds - which are themselves fuzzy - are not asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:43" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000856", "lbl" : "temperate marginal sea biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marginal sea biome which is located in a region with a temperate climate." }, "subsets" : [ "\"wwfBiome\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A component of the WWF Temperate Shelf and seas ecoregions grouping" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000857", "lbl" : "temperate mediterranean sea biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mediterranean sea biome which is subject to temperate climate patterns." }, "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000858", "lbl" : "marine upwelling biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine biome which contains communities adapted to living in an environment determined by an upwelling process." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000859", "lbl" : "tropical marine upwelling biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine upwelling biome which is subject to tropical climate patterns." }, "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000860", "lbl" : "temperate marine upwelling biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine upwelling biome which is located in a region subject to temperate climate patterns." }, "subsets" : [ "\"wwfBiome\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000861", "lbl" : "area of dwarf scrub", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is partly covered by shrubs with ground-hugging stems or low growth habit, in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://en.wikipedia.org/wiki/Subshrub", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of dwarf scrub are dominated by shrubs less than 20 centimeters tall with shrub canopy typically greater than 20% of total vegetation. This type is often co-associated with grasses, sedges, herbs, and non-vascular vegetation. The NLCD 2011 notes that this is intended as an Alaska only land cover. Such thresholds - which are themselves fuzzy - are not asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "area of subshrub" } ], "xrefs" : [ { "val" : "NLCD:51" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "As noted in Wikipedia: \"Because the criteria are matters of degree rather than of kind, the definition of a subshrub is not sharply distinguishable from that of a shrub\"" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "dwarf scrub" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000862", "lbl" : "turbulent aquatic surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A turbulent surface layer of a water body maintained by strong currents setting over submerged ridges or shoals or by winds opposing a current.", "xrefs" : [ "http://www.merriam-webster.com/dictionary/overfall" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "overfall" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This should likely be a part of the surface layer rather than a subclass." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000863", "lbl" : "overflow structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structure which is built into the container of a water body which allows water to flow out of the container when the volume of the water contained exceeds that of its cavity.", "xrefs" : [ "http://www.merriam-webster.com/dictionary/overfall" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "overfall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000864", "lbl" : "mouth of liquid discharge conduit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A site at the terminus of a liquid conveyance conduit where the liquid carried is discharged into the sea or a river.", "xrefs" : [ "http://www.collinsdictionary.com/dictionary/english/overfall" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "overfall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000865", "lbl" : "electric power system", "type" : "CLASS", "meta" : { "definition" : { "val" : "An electric power system is a network of electrical components used to supply, transfer and use electric power.", "xrefs" : [ "https://en.wikipedia.org/wiki/Electric_power_system" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000866", "lbl" : "photovoltaic system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A photovoltaic system is a power system designed to supply usable solar power by means of photovoltaics. It consists of an arrangement of several components, including solar panels to absorb and convert sunlight into electricity, a solar inverter to change the electric current from DC to AC, as well as mounting, cabling and other electrical accessories to set up a working system.", "xrefs" : [ "https://en.wikipedia.org/wiki/Photovoltaic_system" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000867", "lbl" : "solar panel array", "type" : "CLASS", "meta" : { "definition" : { "val" : "A group of solar panels, typically belonging to the same photovoltaic system, arranged to maximise interception of solar radiation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Photovoltaic_system" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "photovoltaic panel array" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000868", "lbl" : "domestic solar panel array", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solar panel array that is integrated into the power system of a human dwelling." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "domestic photovoltaic panel array" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000869", "lbl" : "area of scrub", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by a shrubs, young trees, or stunted trees.. The surfaces of this area are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "http://dx.doi.org/10.1016/j.rse.2015.07.014", "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://en.wikipedia.org/wiki/Subshrub", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of scrub or shrub are dominated by shrubs; less than 5 meters tall with shrub canopy typically greater than 20% of total vegetation. This class includes true shrubs, young trees in an early successional stage or trees stunted from environmental conditions. Such thresholds - which are themselves fuzzy - are not asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "area of shrub" } ], "xrefs" : [ { "val" : "NLCD:52" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "As noted in Wikipedia: \"Because the criteria are matters of degree rather than of kind, the definition of a subshrub is not sharply distinguishable from that of a shrub\"" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "shrub/scrub" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000870", "lbl" : "ground deformation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process in which a solid planetary surface is deformed." }, "comments" : [ "This is a class to be filled by inference." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000871", "lbl" : "puddle of water", "type" : "CLASS", "meta" : { "definition" : { "val" : "A puddle is a small accumulation of water, on a surface. It can form either by pooling in a depression on the surface, or by surface tension upon a flat surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Puddle" ] }, "comments" : [ "This class refers only to puddles of water, see https://github.com/EnvironmentOntology/envo/issues/337" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000872", "lbl" : "ballast water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ballast water is water contained in the ballast tanks of sea-going vessels.", "xrefs" : [ "http://www.nature.com/news/four-routes-to-better-maritime-governance-1.21051?WT.mc_id=TWT_NatureNews", "https://en.wikipedia.org/wiki/Ballast_water_discharge_and_the_environment", "https://en.wikipedia.org/wiki/Sailing_ballast#Water_ballast" ] }, "comments" : [ "This definition could be improved, as ballast water is often used in more general ways, beyond the water contained in a ballast tank at any given time. For example, water which has just been released from a ballast tank is often still refered to as ballast water." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000873", "lbl" : "ballast tank", "type" : "CLASS", "meta" : { "definition" : { "val" : "A ballast tank is a compartment within a boat, ship or other floating structure that holds water, which is used as ballast to provide stability for a vessel.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ballast_tank" ] }, "comments" : [ "Consider using http://purl.obolibrary.org/obo/OBI_0000967 as a super-class" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000874", "lbl" : "hailfall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydrological process during which hail stones fall to the surface of an astronomical body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hail" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hail fall" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is Earth-centric for the moment, other types of hail (methane etc) exist" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000875", "lbl" : "precipitation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.", "xrefs" : [ "https://en.wikipedia.org/wiki/Precipitation_%28chemistry%29" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000876", "lbl" : "storm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A storm is an environmental process in which an environmental system and the processes it participates in are strongly perturbed by external forcings. These forcings typically increase the rates of processes unfolding in the system, relative to their normal rates." }, "comments" : [ "The threshold of what constitutes \"strong\" perturbation is not defined here due to considerable semantic variation. If a specific threshold is required, please request a new term." ], "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000877", "lbl" : "atmospheric storm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric storm is a process in which a portion of an astronomical body's atmosphere is strongly perturbed from its prevaling weather.", "xrefs" : [ "https://en.wikipedia.org/wiki/Storm" ] }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000878", "lbl" : "thunderstorm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric storm which occurs in cumulonimbus clouds and during which lightning and thunder occur." }, "comments" : [ "Thunderstorms may or may not involve processes which result in strong winds, heavy rain, snow, sleet, hail, or other forms of precipitation." ], "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "electrical storm" }, { "pred" : "hasExactSynonym", "val" : "lightning storm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000879", "lbl" : "rainstorm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric storm during which intense rainfall occurs." }, "subsets" : [ "\"environmental_hazards\"", "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000880", "lbl" : "hailstorm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric storm during which intense hailfall occurs", "xrefs" : [ "https://glossary.ametsoc.org/wiki/Hailstorm" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoAtmo\"", "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000881", "lbl" : "snowstorm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric storm during which intense snowfall occurs." }, "subsets" : [ "\"environmental_hazards\"", "\"envoAtmo\"", "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000882", "lbl" : "icestorm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric storm during which freezing rain falls and accumulates as ice on exposed surfaces.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_storm", "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Icestorms are associated with multiple hazards. Significant accumulations of ice pull down trees and utility lines resulting in loss of power and communication. These accumulations of ice make walking and driving extremely dangerous. Significant ice accumulations are usually accumulations of 0.25 inch or 0.60 cm or more. Has synonyms silver storm, glaze storm.", "The U.S. National Weather Service defines an ice storm as a storm which results in the accumulation of at least 0.25-inch (6.4 mm) of ice on exposed surfaces." ], "subsets" : [ "\"environmental_hazards\"", "\"envoAtmo\"", "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glaze event" }, { "pred" : "hasExactSynonym", "val" : "glaze storm" }, { "pred" : "hasExactSynonym", "val" : "ice storm" }, { "pred" : "hasExactSynonym", "val" : "silver storm" }, { "pred" : "hasExactSynonym", "val" : "silver thaw" }, { "pred" : "hasRelatedSynonym", "val" : "glaze event" }, { "pred" : "hasRelatedSynonym", "val" : "silver thaw" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Note it is a hazard, could perhaps later link to https://github.com/Vocamp/Hazard or https://github.com/Vocamp/Hazard/blob/master/concept-map/ModifiedHazardousSituation.png and https://github.com/SDG-InterfaceOntology/sdgio/issues/14" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000883", "lbl" : "area of developed open space", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation planted for recreation, erosion control, or aesthetic purposes interspersed by constructed or manufactured objects and materials. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of developed open space are dominated by vegetation such as lawn grasses and include large-lot single-family housing units, parks, golf courses. Further, it is asserted that \"impervious surfaces\", most likely referring to concrete and related substances, cover less than 20% of the area. Such thresholds - which are themselves fuzzy - are not asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:21" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. This would be helped by more clear listings of entities included in this classification. However, the class is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "developed, open space" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000884", "lbl" : "area of developed space with low usage intensity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation and by constructed or manufactured objects and materials covering up to approximately half its extent. Such areas are used for low intensity purposes such as accommodating collections of single-family residential units. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of developed space under low intensity usage are dominated by vegetation such as lawn grasses and include collections of single-family housing units. Further, it is asserted that \"impervious surfaces\", most likely referring to concrete and related substances, cover between than 20 - 49% of the area. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:22" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. This would be helped by more clear listings of entities included in this classification. However, the class is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "developed, low intensity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000885", "lbl" : "area of developed space with medium usage intensity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by constructed or manufactured objects and materials covering from half to three-forths of its extent and by cultivated or anthropically maintained vegetation. Such areas are used for medium intensity purposes such as accommodating dense collections of single-family residential units. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of developed space under medium intensity usage are dominated by vegetation such as lawn grasses and include collections of single-family housing units. Further, it is asserted that \"impervious surfaces\", most likely referring to concrete and related substances, cover between than 50 - 79% of the area. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:23" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. This would be helped by more clear listings of entities included in this classification. However, the class is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "developed, medium intensity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000886", "lbl" : "area of developed space with high usage intensity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of developed space used for high intensity purposes such as accommodating dense and multi-occupant residential, commercial, and industrial units. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, areas of developed space under high intensity usage are dominated by constructed features where humans reside and work. Examples include apartment complexes, row houses and commercial/industrial facilities. Further, it is asserted that \"impervious surfaces\", most likely referring to concrete and related substances, cover between than 80 - 100% of the area. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:24" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. This would be helped by more clear listings of entities included in this classification. However, the class is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "developed, high intensity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000887", "lbl" : "area of sedge- and forb-dominated herbaceous vegetation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by sedges or forbs, possibly interpersed with grasses or grass-like plants. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, at least 80% of these areas are covered by sedge or forbs. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The NLCD description also notes that land covered by sedge tundra and sedge tussock tundra are subsumed in this category. The original definition notes that this is intended as an \"Alaska only\" category." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:72" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "sedge/herbaceous" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000888", "lbl" : "area of gramanoid or herbaceous vegetation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by gramanoid or herbaceous vegetation and which is not subject to intensive management by humans. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, at least 80% of these areas are covered by grasslands or non-woody, herbaceous plants. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The NLCD description also notes that, while no \"intensive\" management such as tilling is performed in these areas, they may be used for grazing." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:71" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "grassland/herbaceous" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000889", "lbl" : "area of lichen-dominated vegetation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by fruticose or foliose lichens and which is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, at least 80% of these areas are covered by lichens. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The original definition notes that this is intended as an \"Alaska only\" category." ], "subsets" : [ "\"envoPolar\"", "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:73" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "lichens" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000890", "lbl" : "area of moss-dominated vegetation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by mosses and which is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, at least 80% of these areas are covered by mosses. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The original definition notes that this is intended as an \"Alaska only\" category." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:74" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "moss" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000891", "lbl" : "area of pastureland or hayfields", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is partly covered by planted grasses, legumes, or mixtures of grass and legumes and used for livestock grazing or the production of seed or hay crops. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, at least 20% of these areas are covered by pasturelands or hayfields. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The NLCD also notes that the crops are grown on a perennial cycle in these areas." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:81" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "pasture/hay" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000892", "lbl" : "area of cropland", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is partly covered either by annual crops and perennial woody crops or by actively tilled land. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, at least 20% of these areas are covered by croplands or actively tilled land. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The NLCD provides corn, soybeans, vegetables, tobacco, and cotton as examples of annual crops and the trees and vines in orchards and vineyards as examples of perennial woody crops." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:82" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "cultivated crops" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000893", "lbl" : "area of woody wetland", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is partly covered by forest or shrubland vegetation and where the underlying soil or substrate is periodically saturated with or covered by water. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, at least 20% of these areas are covered by forest or shrubland vegetation. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:90" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "woody wetlands" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000894", "lbl" : "area of emergent herbaceous wetland", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by perennial herbaceous vegetation and where the underlying soil or substrate is periodically saturated with or covered by water. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] }, "comments" : [ "According to the NLCD 2011, at least 80% of these areas are covered by herbaceous vegetation. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition." ], "subsets" : [ "\"nlcd2011\"" ], "xrefs" : [ { "val" : "NLCD:95" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "emergent herbaceous wetlands" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000895", "lbl" : "snowfall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydrological process in which irregular aggregates of snow fall to the surface of an astronomical body." }, "subsets" : [ "\"environmental_hazards\"", "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "snow fall" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is currently bound to water-based snow on Earth, may need revisions for interplanetary applications" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000896", "lbl" : "freezing rainfall", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water-based rainfall which freezes either 1) on impact with a surface to form a coating of clear ice (glaze) or 2) after percolating through surface layers.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "A surface temperature inversion is usually required. In such an inversion, the surface must have a temperature below freezing, while the temperature of the atmosphere where the precipitation forms is above freezing. Alternately, if the temperature of the ground surface and glazed objects is typically near or below freezing (0C or 32F), it is necessary that the water drops be supercooled before striking. Freezing rain can sometimes occur on surfaces exposed to the air (such as tree limbs) with air temperatures slightly above freezing in strong winds. Local evaporational cooling may result in freezing. Freezing rain frequently occurs, therefore, as a transient condition between the occurrence of rain and ice pellets (sleet). When encountered by an aircraft in flight, freezing rain can cause a dangerous accretion of clear icing. In aviation weather observations, this hydrometeor is encoded ZR by NOAA." ], "subsets" : [ "\"environmental_hazards\"", "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "freezing rain" }, { "pred" : "hasBroadSynonym", "val" : "freezing rain fall" } ], "xrefs" : [ { "val" : "METAR:FZRA" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This term exists, we're revising the definition with ESIP semantic Harmonization group, delete the old one.\n\nConsider adding axioms like PATO:\"decreased temperature\" to this and other cold forms of precipitation, such that we can create a grouping class to be filled by inference (with hail, sleet, snow, freezing rain). Something like precipitation below the liquid-solid phase transition point of water." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000897", "lbl" : "electrostatic discharge process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a sudden flow of electricity occurs, often accompanied by a visible release of photons, between two electrically charged objects due to contact, an electrical short, or dielectric breakdown.", "xrefs" : [ "https://en.wikipedia.org/wiki/Electrostatic_discharge" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This should probably be moved to an ontology of physical processes when one is created, and be imported back into ENVO." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000898", "lbl" : "atmospheric lightning", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sudden electrostatic discharge which occurs during an electrical storm as differentially charged atmospheric entities equalise their charge.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lightning" ] }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lightning" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000899", "lbl" : "intercloud lightning", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lightning process during which electrostatic discharge occurs between at least two clouds." }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CC lightning" }, { "pred" : "hasExactSynonym", "val" : "cloud-cloud lightning" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000900", "lbl" : "intracloud lightning", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lightning process during which electrostatic discharge occurs within a single cloud." }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "IC lightning" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000901", "lbl" : "lightning strike", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lightning process during which electrostatic discharge occurs between a cloud and an object on a planetary surface, or a planetary surface itself." }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CG lightning" }, { "pred" : "hasExactSynonym", "val" : "cloud-ground lightning" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000902", "lbl" : "lightning flash", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lightning process during which electrostatic discharge occurs within a single cloud or between multiple clouds." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000903", "lbl" : "blizzard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blizzard is a severe snowstorm during which snowfall is transported by strong winds, sustained for several hours.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Main_Page", "http://www.bom.gov.au/lam/glossary/", "http://www.physicalgeography.net/glossary.html", "https://orcid.org/0000-0003-4808-4736", "https://www.ec.gc.ca/meteo-weather/default.asp?lang=En&n=B8CD636F-1&def=allShow", "https://en.wikipedia.org/wiki/Blizzard" ] }, "comments" : [ "The U.S. National Weather Service specifies sustained wind or frequent gusts of 16 m per second (30 kt or 35 mi per hour) or greater, accompanied by falling and/or blowing snow, frequently reducing visibility to less than 400 m (0.25 mi or 0.4 km) for 3 hours or longer. Earlier definitions also included a condition of low temperatures, on the order of -7C (20F) or lower, or -12C (10F) or lower (severe blizzard). The name originated in the United States but it is also used in other countries. In the Antarctic the name is given to violent autumnal winds off the ice cap. In southeastern France, the cold north wind with snow is termed blizzard (see also boulbie). Similar storms in Russian Asia are the buran and purga. In popular usage in the United States and in England, the term is often used for any heavy snowstorm accompanied by strong winds.", "To qualify a snowstorm as a blizzard, some sources require the windspeed to be at least 56 km/h and the duration of the storm to be at least three hours. We set no such hard boundaries in this definition, as this should be done with reference to local standards." ], "subsets" : [ "\"environmental_hazards\"", "\"envoAtmo\"", "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "boulbie" }, { "pred" : "hasNarrowSynonym", "val" : "buran" }, { "pred" : "hasNarrowSynonym", "val" : "purga" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000904", "lbl" : "ground blizzard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A ground blizzard is a storm during which snow which has settled on a planetary surface is resuspended in and transported through its atmosphere by strong winds, sustained for several hours.", "xrefs" : [ "https://en.wikipedia.org/wiki/Blizzard" ] }, "comments" : [ "This form of blizzard does not involve snowfall as the snow which is blown by the winds is already present on the ground. To qualify a snowstorm as a blizzard, some sources require the windspeed to be at least 56 km/h and the duration of the storm to be at least three hours. We set no such hard boundaries in this definition, as this should be done with reference to local standards." ], "subsets" : [ "\"environmental_hazards\"", "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000905", "lbl" : "shrimp pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lentic water body which is used for the artificial culture of shrimp.", "xrefs" : [ "http://orcid.org/0000-0002-8260-7097", "http://www.fao.org/3/contents/76b2641d-29e4-51b0-b9e5-6ca46beb0d9f/AC210E02.htm", "http://www.fao.org/docrep/003/x6941e/x6941e04.htm#bm04", "https://en.wikipedia.org/wiki/Shrimp_farming" ] }, "comments" : [ "\"Shrimp\" is a common language term that may refer to multiple crustacean species, typically in the groups Caridea or Dendrobranchiatamarine. These may be marine or freshwater organisms." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "There are multiple subclasses possible for this term, including ponds managed by the traditional (extensive), improved traditional (semi-intensive), and intensive methods of cultivation." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000906", "lbl" : "aquaculture process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which humans rear animals or plants in bodies of water for harvest and consumption.", "xrefs" : [ "http://www.fao.org/docrep/003/x6941e/x6941e04.htm#bm04" ] }, "comments" : [ "In 1988, the FAO introduced a definition of aquaculture which reduces its confusion with capture fisheries: Aquaculture is the farming of aquatic organisms, including fish, molluscs, crustaceans and aquatic plants. Farming implies some form of intervention in the rearing process to enhance production, such as regular stocking, feeding, protection from predators, etc. Farming also implies individual or corporate ownership of the stock being cultivated. For statistical purposes, aquatic organisms which are harvested by an individual or corporate body which has owned them throughout their rearing period contribute to aquaculture, while aquatic organisms which are exploitable by the public as a common property resources, with or without appropriate licences, are the harvest of fisheries." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "aquatic farming" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Expand the sites of occurrence listed as axioms as new terms emerge." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000907", "lbl" : "feasting pit site", "type" : "CLASS", "meta" : { "definition" : { "val" : "An archeological site which contains holes humans had dug in the ground, or their remnants, for the purpose of storing and distributing food, drink, and both functional or ritualistic implements during communal eating and drinking.", "xrefs" : [ "Pappa, M., Halstead, P., Kotsakis, K., & Urem-Kotsou, D. (2004). Evidence for large-scale feasting at Late Neolithic Makriyalos, N Greece. Food, cuisine and society in prehistoric Greece, 5, 16.", "Romero, D., & Lauzon, A. (2015). The Art of Feasting: Style and Identity in a Ritual Area at the Harris Site. In. In L. Ludeman (Ed.), Collected Papers from the 18th Biennial Mogollon Archaeology Conference (pp. 43-50). Las Cruces, New Mexico: Privately published by Lonnie Ludeman." ] }, "comments" : [ "Feasting pits had a wide variety of social functions throughout time, which extended in scope from the single family group to multiple tribes or villages." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000908", "lbl" : "geothermally heated river", "type" : "CLASS", "meta" : { "definition" : { "val" : "A river which is heated by geothermal processes such as heat exchange with lava or hydrothermal percolation.", "xrefs" : [ "http://www.atlasobscura.com/places/the-boiling-river-of-the-amazon" ] }, "comments" : [ "A key example is the Boiling River, or Shanay-timpishka, of the Peruvian Amazon. This river is of high cultural significance and is protected by the shaman of the small town Mayantuyacu, a secluded healing center." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "boiling river" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000909", "lbl" : "biocrust", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer of a solid environmental material which is formed by the presence and activity of photosynthetic microbial assemblages colonising it.", "xrefs" : [ "http://dx.doi.org/10.1038/ncomms10373", "https://en.wikipedia.org/wiki/Biological_soil_crust" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "biological crust" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000910", "lbl" : "soil biocrust", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biocrust which is formed by photosynthetic microbial assemblages colonising the surface layer of a portion of arid soil. Through their successional dynamics, these communities reduce the soil surface's albedo, impart it with stability against erosion, modify its hydrology, and promote its fertility.", "xrefs" : [ "http://dx.doi.org/10.1038/ncomms10373" ] }, "comments" : [ "Couradeau et al. (2016) assert that any albedo reductions associated with biocrust development are due largely to the accumulation of the microbial sunscreen, scytonemin." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "biological soil crust" }, { "pred" : "hasExactSynonym", "val" : "cryptobiotic soil" }, { "pred" : "hasExactSynonym", "val" : "cryptogamic soil" }, { "pred" : "hasExactSynonym", "val" : "microbiotic soil" }, { "pred" : "hasExactSynonym", "val" : "microphytic soil" }, { "pred" : "hasExactSynonym", "val" : "soil biological crust" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000911", "lbl" : "automated teller machine", "type" : "CLASS", "meta" : { "definition" : { "val" : "An electronic telecommunications device that enables the customers of a financial institution to perform financial transactions, particularly cash withdrawal, without the need for a human cashier, clerk or bank teller.", "xrefs" : [ "http://dx.doi.org/10.1128/mSphere.00226-16", "https://en.wikipedia.org/wiki/Automated_teller_machine" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "automated banking machine" }, { "pred" : "hasExactSynonym", "val" : "automatic teller machine" }, { "pred" : "hasExactSynonym", "val" : "automatic telling machine" }, { "pred" : "hasExactSynonym", "val" : "bankomat" }, { "pred" : "hasExactSynonym", "val" : "cash machine" }, { "pred" : "hasExactSynonym", "val" : "cashline" }, { "pred" : "hasExactSynonym", "val" : "cashpoint" }, { "pred" : "hasExactSynonym", "val" : "minibank" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000912", "lbl" : "cloud condensation nucleus", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid or liquid particle, usually 0.2 micrometers in diameter, on which water vapour condenses, seeding cloud formation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cloud_condensation_nuclei" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CCN" }, { "pred" : "hasExactSynonym", "val" : "cloud seed" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000913", "lbl" : "nucleation of cloud condensation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a solid particle or liquid droplet catalyses the condensation of water vapour in an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cloud_condensation_nuclei" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cloud seeding process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000914", "lbl" : "ice ablation zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone which overlaps a glacier or an ice sheet, and in which ice loss exceeds ice gain.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ablation_zone" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ablation zone" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000915", "lbl" : "ice loss process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material decumulation process during which the mass of an existing ice mass decreases in size.", "xrefs" : [ "http://dx.doi.org/10.1038/nrmicro3522", "http://physicalgeography.net/", "https://en.wikipedia.org/wiki/Ablation_zone" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ice loss" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Ice loss could likely become a defined class with some equivalence axioms linking it to processes, along the lines of: 'has part' some (icemelt or 'ice calving process' or 'water ice sublimation process')." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000916", "lbl" : "rubbish landslide", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass wasting process during which refuse from human activities, usually accumulated at a dumping site, falls down a slope under the force of gravity.", "xrefs" : [ "http://www.bbc.com/news/world-africa-39247381" ] }, "comments" : [ "\"At least 48 people have been killed in a landslide at a vast rubbish dump on the outskirts of Ethiopia's capital Addis Ababa, officials say...Hundreds of people attempt to make a living by scavenging at the landfill site, sifting through the rubbish for items they can sell, the BBC's Emmanuel Igunza in Addis Ababa reports\" BBC Africa reports" ], "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "garbage landslide" }, { "pred" : "hasExactSynonym", "val" : "refuse landslide" }, { "pred" : "hasExactSynonym", "val" : "trash landslide" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Of interest to sustainable development goals, linking production and consumption to human health and environmental impacts." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000917", "lbl" : "ice calving process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a part of an ice mass breaks away from the main mass.", "xrefs" : [ "http://dx.doi.org/10.1038/nrmicro3522", "https://orcid.org/0000-0003-4808-4736" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "calving", "xrefs" : [ "https://cdn.earthdata.nasa.gov/conduit/upload/502/cf-standard-name-table_v13.txt" ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000918", "lbl" : "open animal house", "type" : "CLASS", "meta" : { "definition" : { "val" : "An animal house which is only partially surrounded by a building envelope." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000919", "lbl" : "glacial ice ablation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice loss process which occurs in the low-altitude area of a glacier or ice sheet below the firn layer.", "xrefs" : [ "http://dx.doi.org/10.1038/nrmicro3522" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000920", "lbl" : "water ice sublimation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sublimation process during which water ice transitions into a gaseous state." }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000921", "lbl" : "closed animal house", "type" : "CLASS", "meta" : { "definition" : { "val" : "An animal house which has a complete building envelope." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000922", "lbl" : "animal cage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured cage which may be used to confine, contain, or protect an animal.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cage_(enclosure)" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000923", "lbl" : "petting zoo", "type" : "CLASS", "meta" : { "definition" : { "val" : "A petting zoo is a zoological garden which contains domesticated non-human animals and some wild non-human animals that are docile enough for humans to touch and feed.", "xrefs" : [ "https://en.wikipedia.org/wiki/Petting_zoo" ] }, "comments" : [ "Petting zoos are often nested within a zoological garden featuring wild non-human animals, not docile enough for humans to touch." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "petting farm" }, { "pred" : "hasRelatedSynonym", "val" : "children's zoo" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000924", "lbl" : "plumbing drain", "type" : "CLASS", "meta" : { "definition" : { "val" : "An artificial channel which transports unwanted water or waste liquids away from their source, either to a more useful area, a receptacle, or into sewers or stormwater mains as waste discharge to be released or processed.", "xrefs" : [ "https://en.wikipedia.org/wiki/Drain_(plumbing)" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "drain" }, { "pred" : "hasExactSynonym", "val" : "drainage channel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000925", "lbl" : "abattoir", "type" : "CLASS", "meta" : { "definition" : { "val" : "A facility in which non-human animals are slaughtered and processed for human consumption.", "xrefs" : [ "https://en.wikipedia.org/wiki/Slaughterhouse" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "slaughter plant" }, { "pred" : "hasExactSynonym", "val" : "slaughterhouse" }, { "pred" : "hasRelatedSynonym", "val" : "butchery" }, { "pred" : "hasRelatedSynonym", "val" : "meat processing building" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000926", "lbl" : "knackery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A facility in which non-human animals are slaughtered and processed, but not for human consumption.", "xrefs" : [ "https://en.wikipedia.org/wiki/Slaughterhouse" ] }, "comments" : [ "Animals killed in knacker's yards are not fit for human consumption or can no longer be used to perform work." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "knacker's yard" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000927", "lbl" : "day care building", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building which is used to care for a human child during the working day by a person, outside the child's immediate family, other than that child's legal guardians.", "xrefs" : [ "https://en.wikipedia.org/wiki/Day_care" ] }, "comments" : [ "This is a kind of day care facility. A facility need not be a building." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "child care building" }, { "pred" : "hasExactSynonym", "val" : "daycare building" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-1107-9135" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000928", "lbl" : "fish processing building", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building in which fish are subject to a series of operations to prepare them for human consumption.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fish_factory" ] }, "comments" : [ "This is a kind of fish processing facility. Facilities need not be buildings, factory ships may be considered fish processing facilities." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "fish factory" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000929", "lbl" : "mushroom environment", "type" : "CLASS", "meta" : { "comments" : [ "An environment determined by the presence of a mushroom." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000930", "lbl" : "ecological corridor", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which bridges two or more adjoining ecosystems and through which organisms may move or propagate.", "xrefs" : [ "http://www.eionet.europa.eu/gemet/concept/10510", "https://www.eionet.europa.eu/gemet/concept/3756" ] }, "comments" : [ "Ecological corridors may or may not provide habitats for the organisms which move through them. They serve to mitigate the effects of habitat fragmentation by allowing genetic exchange between populations that would otherwise be separated by, e.g., human activity." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "animal corridor" }, { "pred" : "hasRelatedSynonym", "val" : "green corridor" }, { "pred" : "hasRelatedSynonym", "val" : "habitat corridor" }, { "pred" : "hasRelatedSynonym", "val" : "wildlife corridor" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000931", "lbl" : "migration path", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecological corridor through which organisms move during a migration process." }, "comments" : [ "This term refers to the ecosystem(s) the organisms traverse, rather than the spatial track they cover. The latter is better placed in a geospatial ontology." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "migration corridor" }, { "pred" : "hasRelatedSynonym", "val" : "migratory route" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Should be axiomatised with PCO's migration process once it is released." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000932", "lbl" : "nursing home", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building in which nursing aides and skilled nurses provide care and treatment to residents who have significant difficulty coping with the required activities of daily living.", "xrefs" : [ "https://en.wikipedia.org/wiki/Nursing_home_care" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "intermediate care facility" }, { "pred" : "hasBroadSynonym", "val" : "long-term care facility" }, { "pred" : "hasBroadSynonym", "val" : "old people's home" }, { "pred" : "hasBroadSynonym", "val" : "skilled nursing facility" }, { "pred" : "hasExactSynonym", "val" : "care home" }, { "pred" : "hasExactSynonym", "val" : "convalescent home" }, { "pred" : "hasExactSynonym", "val" : "rest home" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class should be linked to SDGIO." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000933", "lbl" : "residential building", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human house which serves as a long-term shelter for its inhabitants and within which they store personal property." }, "comments" : [ "This term is not to be used for hotels, hostels, inns and the like, which provides shorter-term stays." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is under \"human house\" due to the broad definition of \"house\"." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000934", "lbl" : "restaurant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building within which food and drink are prepared and served to customers in exchange for money or other goods and/or services.", "xrefs" : [ "https://en.wikipedia.org/wiki/Restaurant" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "eatery" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000935", "lbl" : "campground", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an ecosystem which may be or has been used for one or more overnight stays by humans sheltering in tents, camper vans, caravans, or improvised shelters.", "xrefs" : [ "https://en.wikipedia.org/wiki/Campsite" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "camping ground" }, { "pred" : "hasExactSynonym", "val" : "camping pitch" }, { "pred" : "hasExactSynonym", "val" : "camping site" }, { "pred" : "hasExactSynonym", "val" : "campsite" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is a very ambiguous term with wide-ranging usage patterns across cultural groups and regions." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000936", "lbl" : "dedicated campground", "type" : "CLASS", "meta" : { "definition" : { "val" : "A campground which has been modified by humans to provide and maintain facilities for camping such as fire pits, road access, latrines, and garbage bins.", "xrefs" : [ "https://en.wikipedia.org/wiki/Campsite" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000937", "lbl" : "impromptu campground", "type" : "CLASS", "meta" : { "definition" : { "val" : "A campground which has no pre-existing facilities installed or maintained by humans, usually found outside of anthropised ecosystems.", "xrefs" : [ "https://en.wikipedia.org/wiki/Campsite" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000938", "lbl" : "hot tub", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which may hold a volume of heated water suitable for one or more humans to bathe in, usually for the purposes of hydrotherapy or pleasure.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hot_tub" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "spa" }, { "pred" : "hasNarrowSynonym", "val" : "Jacuzzi" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000939", "lbl" : "time crystal", "type" : "CLASS", "meta" : { "definition" : { "val" : "An open system in non-equilibrium with its environment that exhibits time translation symmetry breaking.", "xrefs" : [ "https://en.wikipedia.org/wiki/Time_crystal" ] }, "comments" : [ "While the usage of the term is still debated, the general idea is that time crystals (which have been made using ytterbium ions and defect-bearing diamonds) break temporal symmetry analogously to how mineral crystal break spatial symmetry. While spatial crystals are inhomogeneous in space (vs a gas, which is distributed evenly) due to the ordering of their atoms, the properties of atoms in a time crystal are inhomogeneous in the time dimension." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "space-time crystal" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000940", "lbl" : "fissure water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which is partially contained within a fissure or a geological fracture.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/466" ] }, "comments" : [ "While containment is often enough to classify this subtype of water, it is expected that the water's composition is altered by contact with the solid material bounding the fissure's site." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fracture water" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The axiomatisation should be more tuned to the site within the fissure." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000941", "lbl" : "planetary subsurface zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "Regions of a planet which are not exposed to the planet's atmosphere or space, often comprising parts of one or more planetary structural layers." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000942", "lbl" : "continental subsurface zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A region which overlaps parts of one or more planetary structural layers which are located below a continental landmass.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/466" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We may have to soften dependence on planetary structural layers as some planets haven't differentiated by density." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000943", "lbl" : "vegetated hill", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hill which has a surface that is partially or wholly covered by plant communities." }, "comments" : [ "This class will be axiomatised to coordinate with the 'vegetated area' class." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000944", "lbl" : "microplastic particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which has a diameter less than five millimetres.", "xrefs" : [ "https://en.wikipedia.org/wiki/Microplastics", "https://marinedebris.noaa.gov/file/2192/download?token=5dvqb-YY" ] }, "comments" : [ "This classification is based on the thresholds detailed in GESAMP report # 99 on recommendation from the SDG 14 indicator team. While the definition is in accordance with the common use of this term (as per GESAMP report # 99), alternative size classifications exist. Alternative classifications are a piece of plastic which is between 1 and 5 millimetres in diameter, a piece of plastic which has a diameter less than 1 millimetre, or a piece of plastic which has a diameter greater than 330 micrometres. The use of the word diameter in this case was understood to mean the generalised form of diameter, i.e. the largest distance between two points belonging to an object." ], "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "microplastic" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000945", "lbl" : "primary microplastic particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A microplastic particle which is the direct output of a manufacturing process.", "xrefs" : [ "https://en.wikipedia.org/wiki/Microplastics", "https://marinedebris.noaa.gov/file/2192/download?token=5dvqb-YY" ] }, "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Primäres Mikroplastik" }, { "pred" : "hasExactSynonym", "val" : "microplastica primaria" }, { "pred" : "hasExactSynonym", "val" : "microplástico primario" }, { "pred" : "hasRelatedSynonym", "val" : "microplastic" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000946", "lbl" : "secondary microplastic particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A microplastic particle which is derived from the breakdown of larger plastic debris.", "xrefs" : [ "https://en.wikipedia.org/wiki/Microplastics", "https://marinedebris.noaa.gov/file/2192/download?token=5dvqb-YY" ] }, "comments" : [ "The debris that make up the Great Pacific Garbage Patch constantly release microplastics as they break down." ], "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Sekundäres Mikroplastik" }, { "pred" : "hasExactSynonym", "val" : "microplastica secondaria" }, { "pred" : "hasExactSynonym", "val" : "microplástico secundario" }, { "pred" : "hasRelatedSynonym", "val" : "microplastic" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000947", "lbl" : "ecotone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An envirommental system which bridges two or more biomes and which includes ecological communities which blend these biomes' phylogenetic and phenotypic compositions.", "xrefs" : [ "ISBN:978-0-03-058414-5", "https://en.wikipedia.org/wiki/Ecotone", "https://github.com/EnvironmentOntology/envo/issues/501", "https://www.merriam-webster.com/dictionary/ecotone" ] }, "comments" : [ "There are many subtypes of ecotone, some with sharp transitions and others with gradual, patchy transitions between communities. From Wikipedia:Ecotone - The word ecotone was coined from a combination of eco(logy) plus -tone, from the Greek tonos or tension – in other words, a place where ecologies are in tension." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000948", "lbl" : "polar tree-line ecotone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecotone which bridges a subpolar coniferous forest biome and a tundra biome.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tree_line", "https://github.com/EnvironmentOntology/envo/issues/501" ] }, "comments" : [ "Major vegetational ecotones such as that between the northern edge of the Boreal Forest in North America (or taiga in Russia) and the arctic tundra, known as the arctic tree-line ecotone, are controlled largely by large-scale airmass contrasts and are sensitive to climatic change, as noted by R. A. Bryson (1966).\nHarvey Nichols, Ph.D. , April 23, 2017\nEmeritus Professor of Biology." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Arctic tree-line ecotone" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This assumes, of course, that the planet's or planetoid's poles receive less stellar radiation and/or thermal energy than equatorial regions." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000949", "lbl" : "lichen woodland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A woodland which has an understory partially covered by lichen mats and tundra-like vegetation.", "xrefs" : [ "https://www.britannica.com/science/taiga#ref589262" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000950", "lbl" : "water ice formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transformation process during which water ice is formed.", "xrefs" : [ "http://www.waterencyclopedia.com/Re-St/Sea-Water-Freezing-of.html" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000951", "lbl" : "natural environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.", "xrefs" : [ "https://en.wikipedia.org/wiki/Anthropization", "https://en.wikipedia.org/wiki/Natural_environment" ] }, "comments" : [ "In most contexts, 'natural' is defined by the lack of intervention or influence by humans and their activities. On Earth, most environments fall on a scale between completely natural and anthropised." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "non-anthropised environment" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "non-anthropized environment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000952", "lbl" : "anthropisation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a natural environmental system is altered by human action.", "xrefs" : [ "https://en.wikipedia.org/wiki/Anthropization" ] }, "comments" : [ "An area may be classified as anthropized even though it looks natural, such as grasslands that have been deforested by humans. It can be difficult to determine how much a site has been anthropized in the case of urbanization because one must be able to estimate the state of the landscape before significant human action." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anthropization" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000953", "lbl" : "tree line ecotone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecotone which overlaps at least one biome which supports the growth and persistence of trees and at least one that does not. Before ceasing altogether, tree growth becomes sparse and trees appear stunted as conditions become less favourable along this ecotone.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tree_line" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tree line" }, { "pred" : "hasExactSynonym", "val" : "tree-line" }, { "pred" : "hasExactSynonym", "val" : "treeline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000954", "lbl" : "alpine tree line ecotone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tree line ecotone across which trees cease to grow due to the low temperatures or duration of snow cover that occur at increased elevations above mean sea level.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tree_line" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "alpine tree line" }, { "pred" : "hasExactSynonym", "val" : "alpine tree-line" }, { "pred" : "hasExactSynonym", "val" : "alpine treeline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000955", "lbl" : "desert tree line ecotone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tree line ecotone across which trees cease to grow due to insufficient water availability due to a lack of water-based precipitation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tree_line" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "desert tree line" }, { "pred" : "hasExactSynonym", "val" : "desert tree-line" }, { "pred" : "hasExactSynonym", "val" : "desert treeline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000956", "lbl" : "desert-alpine tree line ecotone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tree line ecotone across which trees cease to grow due to insufficient water availability caused by exposure to increased solar radiation and a lack of rainfall.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tree_line" ] }, "comments" : [ "The lack of rainfall in these ecotones is often due to their elevation above the condensation line of atmospheric water vapour." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "desert-alpine tree line" }, { "pred" : "hasExactSynonym", "val" : "desert-alpine tree-line" }, { "pred" : "hasExactSynonym", "val" : "desert-alpine treeline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000957", "lbl" : "double tree line ecotone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tree line ecotone which contains gaps in tree coverage due to decreased biodiversity in tree-forming plant species: gaps are above the alpine tree line for some species yet below the desert tree line for others, and no species with intermediate tolerances are present.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tree_line" ] }, "comments" : [ "Mountain ranges isolated by oceans or deserts may have restricted repertoires of tree species and contain double tree lines." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "double tree line" }, { "pred" : "hasExactSynonym", "val" : "double tree-line" }, { "pred" : "hasExactSynonym", "val" : "double treeline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000959", "lbl" : "primary atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary atmosphere which is formed as a result of the accretion of gaseous matter from the accretion disc of the planet's star.", "xrefs" : [ "http://abyss.uoregon.edu/~js/ast121/lectures/lec14.html", "https://en.wikipedia.org/wiki/Primary_atmosphere" ] }, "comments" : [ "Planets such as Jupiter and Saturn have primary atmospheres. Primary atmospheres are very thick compared to secondary atmospheres like the one found on Earth. The primary atmosphere was lost on the terrestrial planets due to a combination of surface temperature, mass of the atoms and escape velocity of the planet." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000960", "lbl" : "secondary atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary atmosphere which has formed as a result of its planet's volcanic activity, or by accumulation of material from comet impacts.", "xrefs" : [ "http://abyss.uoregon.edu/~js/ast121/lectures/lec14.html", "https://en.wikipedia.org/wiki/Secondary_atmosphere" ] }, "comments" : [ "A secondary atmosphere is found on many terrestrial planets such as Mercury, Venus, and Mars. Secondary atmospheres are relatively thin compared to primary atmospheres like Jupiter's. Earth has a tertiary atmosphere due to biotic processes." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000961", "lbl" : "tertiary atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary atmosphere which has formed as a result of biotic processes modifying a secondary atmosphere.", "xrefs" : [ "http://abyss.uoregon.edu/~js/ast121/lectures/lec14.html", "https://en.wikipedia.org/wiki/Secondary_atmosphere" ] }, "comments" : [ "Further processing of a secondary atmosphere, for example by the processes of biological life, can produce a tertiary atmosphere, such as that of Earth." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This definition cites biotic processes; however, the source indicated that other processes may cause a secondary atmosphere to transition into a tertiary one. More input is needed." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000962", "lbl" : "diatomite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sedimentary rock which is primarily composed of the fossilized, siliceous remains of diatoms mixed with varying amounts of other clays and minerals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Diatomaceous_earth" ] }, "comments" : [ "This material is easily crumbled into a fine white to off-white powder. The powder has a particle size ranging from less than 3 micrometres to more than 1 millimetre, but typically 10 to 200 micrometres. The diatoms in each deposit contain different amounts of silica, depending on the age of the deposit. The species of diatom may differ among deposits. The species of diatom is dependent upon the age and paleo-environment of the deposit. In turn, the shape of a diatom is determined by its species. The typical chemical composition of oven-dried diatomaceous earth is 80 to 90% silica, with 2 to 4% alumina (attributed mostly to clay minerals) and 0.5 to 2% iron oxide." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "kieselguhr" }, { "pred" : "hasExactSynonym", "val" : "kieselgur" }, { "pred" : "hasRelatedSynonym", "val" : "D.E." }, { "pred" : "hasRelatedSynonym", "val" : "diatomaceous earth" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000963", "lbl" : "diatomite particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of rock which is primarily composed of diatomite: the fossilized, siliceous remains of diatoms mixed with varying amounts of other clays and minerals.", "xrefs" : [ "https://en.wikipedia.org/wiki/Diatomaceous_earth" ] }, "comments" : [ "Diatomite is easily crumbled into a fine white to off-white powder. The powder has a particle size ranging from less than 3 micrometres to more than 1 millimetre, but typically 10 to 200 micrometres. The diatoms in each deposit contain different amounts of silica, depending on the age of the deposit. The species of diatom may differ among deposits. The species of diatom is dependent upon the age and paleo-environment of the deposit. In turn, the shape of a diatom is determined by its species. 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Conduits include canals, pipelines, and tunnels. Water intakes typically transport water for purposes of hydroelectric power engineering, water supply, or irrigation." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000969", "lbl" : "cafeteria", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building which provides the site for food services with little or no waiting staff furnishing table service." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "canteen" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000970", "lbl" : "delicatessen", "type" : "CLASS", "meta" : { "definition" : { "val" : "A food shop which sells a selection of food products that are not typical dietary components of the human population it is co-located with." }, "comments" : [ "The food products sold in a delicatessen are often considered unusual by the majority of its customers and may come from foreign food supplies which are not widely imported into its region of operation." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "deli" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000971", "lbl" : "food truck", "type" : "CLASS", "meta" : { "definition" : { "val" : "A truck which is equipped to cook and sell food.", "xrefs" : [ "https://en.wikipedia.org/wiki/Food_truck" ] }, "comments" : [ "Due to the facilities on board, food trucks are often larger than other trucks with comparable mechanics." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000972", "lbl" : "take-out restaurant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A restaurant which provides prepared meals or other food products that the purchaser must eat off its premises.", "xrefs" : [ "https://en.wikipedia.org/wiki/Restaurant" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "take out restaurant" }, { "pred" : "hasExactSynonym", "val" : "take-away" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000973", "lbl" : "kiosk", "type" : "CLASS", "meta" : { "definition" : { "val" : "A booth with an open window on one side.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kiosk" ] }, "comments" : [ "This definition of kiosk is characteristic of the Western hemisphere and used in English-speaking countries." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The relation between booths and buildings needs to be clarified. Booth should be its own class." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000974", "lbl" : "food kiosk", "type" : "CLASS", "meta" : { "definition" : { "val" : "A kiosk from which food products are sold.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kiosk" ] }, "comments" : [ "This definition of kiosk is characteristic of the Western hemisphere and used in English-speaking countries." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The relation between booths and buildings needs to be clarified. Booth should be its own class." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000975", "lbl" : "animal trap", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is designed to catch and hold animals.", "xrefs" : [ "http://www.thefreedictionary.com/trap" ] }, "subsets" : [ "\"envoCesab\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000976", "lbl" : "pitfall trap", "type" : "CLASS", "meta" : { "definition" : { "val" : "An animal trap which consists of a container set flush with the ground such that animals moving along the ground may fall in and be available for examination or collection.", "xrefs" : [ "Barber H (1931) Traps for cave-inhabiting insects. J Elisha Mitchell Sci Soc. 46:259–266.", "Hertz M (1927) Huomioita petokuoriaisten olinpaikoista. Luonnon Ystava. 31:218–222.", "Mitchell B (1963) Ecology of two carabid beetles, Bembidion lampros (Herbst) and Trechus quadristriatus (Shrank). J Animal Ecol. 32(3): 377-392." ] }, "subsets" : [ "\"envoCesab\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000977", "lbl" : "dry pitfall trap", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pitfall trap in which a glass, plastic, or metal container devoid of accumulations of any liquid is used to contain any animal that falls inside.", "xrefs" : [ "ISBN:978-0-646-04569-6", "ISBN:978-94-009-1225-0", "http://www.animalethics.org.au/policies-and-guidelines/wildlife-research/pitfall-traps" ] }, "subsets" : [ "\"envoCesab\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000978", "lbl" : "wet pitfall trap", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pitfall trap in which the container used to hold trapped animals is filled with a liquid solution formulated to hold, kill, and preserve any animal or animals which falls within it.", "xrefs" : [ "ISBN:978-0-646-04569-6", "ISBN:978-94-009-1225-0", "http://www.animalethics.org.au/policies-and-guidelines/wildlife-research/pitfall-traps" ] }, "comments" : [ "Aqueous solutions used in these traps include: formalin (10% formaldehyde), alcohol, methylated spirits, trisodium phosphate and picric acid." ], "subsets" : [ "\"envoCesab\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000979", "lbl" : "channel of an intermittent river", "type" : "CLASS", "meta" : { "definition" : { "val" : "A channel of an intermittent stream which contains a river when water supply exceeds evapotranspiration and bed seepage.", "xrefs" : [ "http://irbas.cesab.org/", "https://en.wikipedia.org/wiki/Intermittent_river" ] }, "subsets" : [ "\"envoCesab\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ephemeral river" }, { "pred" : "hasExactSynonym", "val" : "intermittent river" }, { "pred" : "hasRelatedSynonym", "val" : "temporary river" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000980", "lbl" : "channel of an intermittent stream", "type" : "CLASS", "meta" : { "definition" : { "val" : "A channel through which a directional flow of water periodically occurs, ceasing when bed seepage or evapotranspiration exceed the available water supply.", "xrefs" : [ "http://encyclopedia2.thefreedictionary.com/Intermittent+stream" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "intermittent stream" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000981", "lbl" : "mass liquid flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process whereby a volume of liquid moves due to a disequilibrium of physical forces.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wind" ] }, "comments" : [ "This class can refer to the flow of any material in a liquid phase." ], "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000982", "lbl" : "water flow process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which a volume of liquid water is transported due to a disequilibria in physical forces." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000983", "lbl" : "technosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an astronomical body which includes, as parts, all the entities which have been constructed or manufactured by humans or their technology and which are within the gravitational sphere of influence of that body.", "xrefs" : [ "http://dx.doi.org/10.1177/2053019616677743", "http://www.yourdictionary.com/technosphere", "https://www.sciencedaily.com/releases/2016/11/161130085021.htm" ] }, "comments" : [ "The gravitational sphere of influence referenced in this class' definition is the Hill sphere: a region in which an object dominates the attraction of satellites despite gravitational perturbations." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000984", "lbl" : "grocery store", "type" : "CLASS", "meta" : { "definition" : { "val" : "A food shop in which food products are the primary offer for sale or trade.", "xrefs" : [ "http://orcid.org/0000-0002-8844-9165" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000985", "lbl" : "fairground", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an ecosystem which has been allocated to host a gathering of people for multiple entertainment or commercial activities.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fair", "https://en.wikipedia.org/wiki/Fairground" ] }, "comments" : [ "Fairgrounds, or parts thereof, may be constructed (e.g. concreted over) or be natural (e.g. clearings or heaths), thus land use is the key differentia." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A good candidate to draft land use semantics around" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000986", "lbl" : "agricultural fairground", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fairground which is used to exhibit agricultural technology, livestock, and farm-related activity.", "xrefs" : [ "http://orcid.org/0000-0002-8844-9165", "https://en.wikipedia.org/wiki/Fair", "https://en.wikipedia.org/wiki/Fairground" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000987", "lbl" : "market", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an ecosystem where people gather for the purchase and sale of provisions, livestock, and other goods.", "xrefs" : [ "https://en.wikipedia.org/wiki/Market_(place)" ] }, "comments" : [ "As with campgrounds and fairgrounds, land use is the key differentia here. The regularity of marketplace activities may provide a differentia for further growth of this branch." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "public market" }, { "pred" : "hasExactSynonym", "val" : "bazaar" }, { "pred" : "hasExactSynonym", "val" : "marketplace" }, { "pred" : "hasExactSynonym", "val" : "mercado" }, { "pred" : "hasExactSynonym", "val" : "palengke" }, { "pred" : "hasExactSynonym", "val" : "souk" }, { "pred" : "hasExactSynonym", "val" : "tianguis" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Hierarchies based on land use should replace the anthropogenic feature class once we have a stable rationale." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000988", "lbl" : "ethnic food shop", "type" : "CLASS", "meta" : { "definition" : { "val" : "A food shop in which the food products on offer are restricted to those produced in a region and cultural setting other than that of the shop's locality." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ethnic food store" }, { "pred" : "hasExactSynonym", "val" : "ethnic speciality shop" }, { "pred" : "hasExactSynonym", "val" : "ethnic speciality store" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000989", "lbl" : "plumbing fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "An exchangeable device which can be connected to a plumbing system to deliver and drain water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Plumbing_fixture" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000990", "lbl" : "sink fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plumbing fixture which is bowl-shaped and used for washing hands, dishwashing, and other purposes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sink" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hand basin" }, { "pred" : "hasExactSynonym", "val" : "wash basin" }, { "pred" : "hasRelatedSynonym", "val" : "sink" }, { "pred" : "hasRelatedSynonym", "val" : "sinker" }, { "pred" : "hasRelatedSynonym", "val" : "washbowl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000991", "lbl" : "bathtub fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plumbing fixture which may serve as a container for water in which humans or other animals may bathe." }, "comments" : [ "Of course, there are other uses for bathtubs." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bathtub" }, { "pred" : "hasRelatedSynonym", "val" : "bath" }, { "pred" : "hasRelatedSynonym", "val" : "tub" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000992", "lbl" : "shower fixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plumbing fixture within which a human or other animal may bathe under a spray of water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Shower" ] }, "comments" : [ "Indoors, there is a drain in the floor. Most showers have temperature, spray pressure and adjustable showerhead nozzle. Showering is common in Western culture due to the efficiency of using it compared with a bathtub. Its use in hygiene is, therefore, common practice. A shower uses less water on average than a bath: 80 litres for a shower compared with 150 litres for a bath." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "shower" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "As some showers have no drain, this may cause issues with the definition of plumbing fixture." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000993", "lbl" : "manufacturing process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Manufacturing" ] }, "comments" : [ "The term may refer to a range of human activity, from handicraft to high tech, but is most commonly applied to industrial production, in which raw materials are transformed into finished goods on a large scale." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000994", "lbl" : "planetary manufacturing process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufacturing process which occurs on a planet." }, "comments" : [ "See https://github.com/EnvironmentOntology/envo/issues/513 for discussion." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Whether this is within the planet's Hill sphere, the region which extends from its exosphere to its core, or some other planetary region is not clear." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000995", "lbl" : "dry river", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dry stream channel through which a river had flowed, but now contains no appreciable accumulations of water.", "xrefs" : [ "https://orcid.org/0000-0002-4366-3088" ] }, "comments" : [ "See http://purl.obolibrary.org/obo/ENVO_01000979 for the channel of an intermittent river." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000996", "lbl" : "human-directed construction process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An process during which natural or manufactured materials and products are processed and arranged by humans or their technology into structures." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The nature of \"structures\" must be further specified." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000997", "lbl" : "environmental system determined by a quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which is determined by materials bearing roughly homogeneous qualities." }, "comments" : [ "Organisational class. Not intended for annotation." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000998", "lbl" : "environmental system determined by a material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system within which an environmental material strongly influences the system's composition and properties." }, "comments" : [ "Organisational class. Not intended for annotation. Subclasses describe environments which are usually permeated by an environmental material. They may also describe environments which are sufficiently close to a material, that their dynamics are strongly influenced by it (e.g. a patch of forest ecosystem neighbouring a uranium dump)." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01000999", "lbl" : "rhizosphere environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by the presence of a plant rhizosphere." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Plant rhizosphere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001000", "lbl" : "environmental system determined by an organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which is determined by a living organism." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "host-associated environment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001001", "lbl" : "plant-associated environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by a green plant." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "plant environment" }, { "pred" : "hasExactSynonym", "val" : "Viridiplantae-associated environment" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Plant" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001002", "lbl" : "animal-associated environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by an animal." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "animal environment" }, { "pred" : "hasExactSynonym", "val" : "Metazoan-associated environment" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Animal" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001003", "lbl" : "non-saline environment", "type" : "CLASS", "meta" : { "comments" : [ "This class (term) is defined by the lack of a quality (i.e. the lack of salinity or increased osmolarity), which is not best-practice ontologically. Use for annotation is generally discouraged and users should use classes which positively describe the material or environment sampled (i.e. stating the qualities the entity has, rather than those it does not)." ], "subsets" : [ "\"envoEmpo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Non-saline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001004", "lbl" : "groundwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "Underground water which is located in pore spaces found in rock or unconsolidated deposits such as soil, clay, or gravel.", "xrefs" : [ "https://en.wikipedia.org/wiki/Groundwater" ] }, "comments" : [ "The definition of aquifer is quite permissive, referencing any water bearing rock or unconsolidated material." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ground water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001005", "lbl" : "lunar rainbow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lunar rainbow is a rainbow produced by the refraction of light, which has been reflected from a moon's surface, by water droplets in an astronomical body's atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rainbow" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "moonbow" }, { "pred" : "hasExactSynonym", "val" : "white rainbow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001006", "lbl" : "rainbow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rainbow is a photometeor which consists of a spectral separation of light, formed as a result of the reflection, refraction, and dispersion of light in water droplets suspended in an astronomical body's atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rainbow" ] }, "comments" : [ "The term 'rainbow' is usually used to refer to solar rainbows, but greater specificity should be used when possible." ], "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001007", "lbl" : "solar rainbow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solar rainbow is a rainbow produced by the refraction of light. which has been emitted by a star, by water droplets in the atmosphere of an astronomical body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rainbow" ] }, "comments" : [ "The astronomical body where the rainbow occurs is understood to orbit the star which produces the light which forms the rainbow." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "stellar rainbow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001008", "lbl" : "meteor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.", "xrefs" : [ "https://cloudatlas.wmo.int/other-meteors.html" ] }, "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001009", "lbl" : "photometeor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A meteor that is primarily composed of light." }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Requires radiative phenomena to be added for axiomatisation." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001010", "lbl" : "hydrometeor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A meteor which is primarily composed of water.", "xrefs" : [ "https://cloudatlas.wmo.int/other-meteors.html" ] }, "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001011", "lbl" : "light emitted by lightning", "type" : "CLASS", "meta" : { "definition" : { "val" : "A photometeor which is formed as a result of sudden electrostatic discharge in the atmosphere." }, "comments" : [ "This phenomenon is often treated as interchangeable with the process of electrostatic discharge that causes it." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lightning" }, { "pred" : "hasRelatedSynonym", "val" : "lightning flash" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001012", "lbl" : "lithometeor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A meteor which is primarily composed of rock." }, "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001013", "lbl" : "reflection rainbow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rainbow which forms from sunlight which has been reflected off a body of water prior to its interaction with water droplets in an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rainbow" ] }, "comments" : [ "Not to be confused with a reflected rainbow, which is not a photometeor." ], "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001014", "lbl" : "monochrome solar rainbow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solar rainbow which is formed by a narrow band of wavelengths, the rest of the spectrum having been scattered away by an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rainbow" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "monochrome rainbow" }, { "pred" : "hasExactSynonym", "val" : "red rainbow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001015", "lbl" : "fogbow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rainbow which forms through the interaction of sunlight with the water droplets which constitute fog or clouds; light is diffracted by these droplets such that the photometeor appears almost white with faint reds on the sky-facing side and faint blues on the planet-facing side of the bow.", "xrefs" : [ "https://en.wikipedia.org/wiki/Rainbow" ] }, "comments" : [ "Often, fogbows are treated as separate from rainbows; however, as the formation processes are much the same, we currently classify these as a subclass of rainbow pending input from domain experts." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fog bow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001016", "lbl" : "glory", "type" : "CLASS", "meta" : { "definition" : { "val" : "A photometeor which is formed by wave interference of light refracted within water droplets which constitute mist or clouds and consists of one or more concentric, successively dimmer rings, each of which has red wavelengths distant to the glory's centre and blue wavelengths towards the centre.", "xrefs" : [ "https://en.wikipedia.org/wiki/Glory_(optical_phenomenon)" ] }, "comments" : [ "This is not to be confused with a circular rainbow, which is formed through different processes." ], "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001017", "lbl" : "halo", "type" : "CLASS", "meta" : { "definition" : { "val" : "A photometeor which is produced by light that is reflected, refracted, and dispersed by ice crystals, capable of acting as prisms and mirrors, suspended in an astronomical body's atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Halo_(optical_phenomenon)" ] }, "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001018", "lbl" : "hypereutrophic water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which has a very high concentration of nutrients.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/528" ] }, "comments" : [ "The thresholds of eutrophy are fluid and often locally defined." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001019", "lbl" : "hypereutrophic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is composed primarily of water with very high nutrient concentrations.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/529" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001020", "lbl" : "hypersaline lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is primarily composed of water with a concentration of dissolved salts greater than that of ocean water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hypersaline_lake" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001021", "lbl" : "humic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is composed primarily water with high concentrations of humic substances and organic acids, resulting in brown- or tea-coloured colouration.", "xrefs" : [ "https://en.wikipedia.org/wiki/Dystrophic_lake" ] }, "comments" : [ "In response to historical misuse of the term in literature, these lakes are better referred to as \"humic lakes\". Although dystrophic lakes are often considered acidic and nutrient-poor (oligotrophic), these lakes actually vary greatly in terms of both pH and productivity. Due to the low pH associated with dystrophic lakes, few bacterial species and other aquatic life are able to survive. They are common in the taiga of North America and Eurasia." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dystrophic lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001022", "lbl" : "natural lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which has formed as the result of processes that are not or are only minimally driven by human activity." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class is to be filled by inference." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001023", "lbl" : "radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.", "xrefs" : [ "https://en.wikipedia.org/wiki/Radiation" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoAstro\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Requires addition of waves for full axiomatisation. This should be linked to \"subatomic particle\" with an \"or\". Note that ENVO represents space as an environmental material (a hard vacuum with sparse material inclusions)." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001024", "lbl" : "particle radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A radiation process during which energy is transmitted or emitted by means of fast-moving subatomic particles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particle_radiation" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001025", "lbl" : "particle beam radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A particle radiation process during which subatomic particles move in the same direction.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particle_radiation" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001026", "lbl" : "electromagnetic radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.", "xrefs" : [ "https://en.wikipedia.org/wiki/Electromagnetic_radiation" ] }, "comments" : [ "Note that this class is concerned only with active radiative processes: static electric and magnetic fields are not inlcuded. All electromagnetic radiation carries radiant energy." ], "subsets" : [ "\"environmental_hazards\"", "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "EM radiation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001027", "lbl" : "acoustic radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A radiation process during which mechanical waves generated by oscillations radiate through an environmental material.", "xrefs" : [ "https://en.wikipedia.org/wiki/Acoustics" ] }, "comments" : [ "The mechanical waves generated by this process are also referred to as pressure waves." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001028", "lbl" : "sediment permeated by freshwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment which has its porespace filled by water which has very low levels of sodium chloride and/or other salts." }, "comments" : [ "We do not specify numeric thresholds for saline vs. non-saline here, as this is variable. Consider specifying this on the information and/or data layer for your purposes. If you require an ENVO class with a fixed threshold, please request one using our issue tracker." ], "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001029", "lbl" : "fecal environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by feces." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Animal distal gut" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001030", "lbl" : "environment determined by a metazoan secretion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a bodily secretion of a metazoan." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Animal secretion" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001031", "lbl" : "environment determined by a plant substance", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a substance produced by a plant." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Plant secretion" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001032", "lbl" : "environment determined by a biofilm on a plant surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a biofilm on the surface of a plant." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Plant surface" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001033", "lbl" : "digestive tract environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a digestive tract." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Animal proximal gut" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001034", "lbl" : "environment determined by a biofilm on an animal surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a biofilm on the surface of a animal." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Animal surface" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001035", "lbl" : "environment determined by a biofilm on a fungal surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a biofilm on the surface of a fungus." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Fungus surface" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001036", "lbl" : "sediment permeated by saline water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment which has its porespace filled by water with increased levels of sodium chloride and other salts." }, "comments" : [ "We do not specify numeric thresholds for saline vs. non-saline here, as this is variable. Consider specifying this on the information and/or data layer for your purposes. If you require an ENVO class with a fixed threshold, please request one using our issue tracker." ], "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001037", "lbl" : "slightly saline water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which contains a slightly increased concentration of dissolved salts, relative to their concentration in freshwater." }, "comments" : [ "The United States Geological Survey classifies slightly saline water as having around 1,000 to 3,000 ppm (0.1–0.3%) of dissolved salts." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "slightly salty water" } ], "xrefs" : [ { "val" : "EcoLexicon:saltwater" }, { "val" : "SWEETRealm:SalineWater" }, { "val" : "SWEETRealm:SaltWater" }, { "val" : "https://en.wikipedia.org/wiki/Saline_water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001038", "lbl" : "moderately saline water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which contains a moderately increased concentration of dissolved salts, relative to their concentration in freshwater." }, "comments" : [ "The United States Geological Survey classifies moderately saline water as having around 3,000 to 10,000 ppm (0.3–1%) of dissolved salts." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "moderately salty water" } ], "xrefs" : [ { "val" : "EcoLexicon:saltwater" }, { "val" : "SWEETRealm:SalineWater" }, { "val" : "SWEETRealm:SaltWater" }, { "val" : "https://en.wikipedia.org/wiki/Saline_water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001039", "lbl" : "highly saline water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which contains a highly increased concentration of dissolved salts, relative to their concentration in freshwater." }, "comments" : [ "The United States Geological Survey classifies highly saline water as having around 10,000 to 35,000 ppm (1–3.5%) of dissolved salts." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "highly salty water" } ], "xrefs" : [ { "val" : "EcoLexicon:saltwater" }, { "val" : "SWEETRealm:SalineWater" }, { "val" : "SWEETRealm:SaltWater" }, { "val" : "https://en.wikipedia.org/wiki/Saline_water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001040", "lbl" : "saline environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which is determined by materials which bear significant concentrations of salts." }, "comments" : [ "The thresholds for \"significant\" concentrations of salts vary widely and thus no committment is made in this class. Subclasses with more explicit thresholds can be made upon request." ], "subsets" : [ "\"envoEmpo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Saline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001041", "lbl" : "fungi-associated environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by a fungal structure." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "fungus environment" }, { "pred" : "hasExactSynonym", "val" : "fungus-associated environment" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Fungus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001042", "lbl" : "sterile water environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by sterile water." }, "comments" : [ "This term can be understood as a negative experimental control primarily composed of sterile water. The quantity of sterile water used may be contaminated; to express pure sterile water, please use http://purl.obolibrary.org/obo/ENVO_00005791" ], "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Negative" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001043", "lbl" : "hypersaline water environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by hypersaline water." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Hypersaline (saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001044", "lbl" : "soil environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by soil." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Soil (non-saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001045", "lbl" : "oceanic subsurface zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A region which overlaps parts of one or more planetary structural layers which are located below an oceanic plate.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/466" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We may have to soften dependence on planetary structural layers as some planets haven't differentiated by density." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001046", "lbl" : "planetary subsurface environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by the subsurface zone of a planet." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001047", "lbl" : "non-saline planetary subsurface environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by those parts of a planetary subsurface zone which are not saline." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Subsurface (non-saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001048", "lbl" : "sediment environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by sediment." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001049", "lbl" : "non-saline sediment environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by sediment permeated by non-saline water." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Sediment (non-saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001050", "lbl" : "saline sediment environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by sediment permeated by saline water." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Sediment (saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001051", "lbl" : "environment determined by a biofilm on a non-saline surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a biofilm on a surface which is exposed to non-saline materials." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Surface (non-saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001052", "lbl" : "aerosol environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by an aerosol." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001053", "lbl" : "saline aerosol environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a saline aerosol." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Aerosol (saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001054", "lbl" : "non-saline aerosol environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by an aerosol with a low concentration of dissolved solutes." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Aerosol (non-saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001055", "lbl" : "environment associated with an animal part or small animal", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by part of a living or dead animal, or a whole small animal." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Animal corpus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001056", "lbl" : "environment determined by a biofilm on a saline surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which has its properties and dynamics determined by a biofilm on a surface which is exposed to saline materials." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Surface (saline)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001057", "lbl" : "environment associated with a plant part or small plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by part of a living or dead plant, or a whole small plant." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Plant corpus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001058", "lbl" : "environment associated with a fungal tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by part of a living or dead fungus." }, "subsets" : [ "\"envoEmpo\"", "\"envoMeo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Fungus corpus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001059", "lbl" : "mock community culture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell culture which is composed of a microbial community of known composition." }, "comments" : [ "Mock communities are typically used as positive controls in experiments." ], "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Mock community" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001060", "lbl" : "single strain cell culture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell culture which is composed of a single population of bacterial or archaeal cells." }, "subsets" : [ "\"envoEmpo\"", "\"envoOmics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Single strain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001061", "lbl" : "caldera lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is contained within a caldera.", "xrefs" : [ "https://en.wikipedia.org/wiki/Crater_lake" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001062", "lbl" : "crater lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake contained within a crater.", "xrefs" : [ "MA:ma", "https://en.wikipedia.org/wiki/Crater_lake" ] }, "comments" : [ "Note that this class does not commit to what kind of crater contains the lake in question. Please see the subclasses for more specificity." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001063", "lbl" : "oxic water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which has an appreciable concentration of dissolved oxygen.", "xrefs" : [ "ORCID:0000-0002-4366-3088", "https://en.wikipedia.org/wiki/Hypoxia_(environmental)" ] }, "comments" : [ "The threshold dissolved oxygen concentration past which water is considered oxic is variable. Typically, this is understood as the concentration at and beyond which organisms inhabiting that water can sustain aerobic metabolism and good health. For most systems, this is above 80% oxygen saturation. Input is welcome here https://github.com/EnvironmentOntology/envo/issues/536" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-21T06:05:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001064", "lbl" : "hypoxic water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which has low levels of dissolved oxygen.", "xrefs" : [ "ORCID:0000-0002-4366-3088", "https://en.wikipedia.org/wiki/Hypoxia_(environmental)" ] }, "comments" : [ "As with oxic and anoxic water, the thresholds for hypoxia are variable. Typically, a hypoxic state is asserted when dissolved oxygen levels decrease to a level where they have detrimental effects on aerobic aquatic organisms, typically below 30% oxygen saturation." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-21T06:05:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001065", "lbl" : "meteorite lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is contained in a crater formed by a meteorite impact.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lake#Meteorite_.28extraterrestrial_impact.2F_crater.29_lakes" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "meteorite crater lake" }, { "pred" : "hasExactSynonym", "val" : "meteorite impact crater lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001066", "lbl" : "impact between astronomical bodies", "type" : "CLASS", "meta" : { "definition" : { "val" : "An impact event is a collision between astronomical bodies.", "xrefs" : [ "https://en.wikipedia.org/wiki/Impact_event" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001067", "lbl" : "meterorite impact", "type" : "CLASS", "meta" : { "definition" : { "val" : "An impact event during which a meteoroid collides with another astronomical body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Impact_event" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001068", "lbl" : "meteoroid", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.", "xrefs" : [ "https://en.wikipedia.org/wiki/Meteoroid" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001069", "lbl" : "metallic material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material which is composed primarily of one or more pure metals and which shows their properties." }, "comments" : [ "While this class allows for some degree of contamination by non-metal substances, the material represented should show at least some of the typical features of a pure metal: hardness (except for liquid metals), opacity, lustre, malleability, fusibility, ductile and good electrical and thermal conductivity." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "metal" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Far more axiomatisation can be done should the qualities of metals be added to PATO or a similar quality ontology. However, note that there are many exceptions to the typical qualities of the majority of metals." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001070", "lbl" : "impact crater lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is contained in a crater formed by an impact event.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lake#Meteorite_.28extraterrestrial_impact.2F_crater.29_lakes" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001071", "lbl" : "impact crater", "type" : "CLASS", "meta" : { "definition" : { "val" : "A crater which was formed as a result of the impact of one astronomical body on another.", "xrefs" : [ "MA:ma", "https://en.wikipedia.org/wiki/Impact_crater" ] }, "xrefs" : [ { "val" : "SWEETRealm:ImpactCrater" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001072", "lbl" : "anoxic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is primarily composed of anoxic water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anaerobic lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001073", "lbl" : "lake with an anoxic hypolimnion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which has a hypolimnion composed primarily of anoxic water.", "xrefs" : [ "http://dx.doi.org/10.4319/lo.1984.29.1.0111" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "anoxic lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001074", "lbl" : "lake with a hypoxic hypolimnion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which has a hypolimnion composed primarily of hypoxic water.", "xrefs" : [ "http://dx.doi.org/10.4319/lo.1984.29.1.0111" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "anoxic lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001075", "lbl" : "hypoxic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is primarily composed of hypoxic water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "oxygen-poor lake" }, { "pred" : "hasRelatedSynonym", "val" : "oxygen-depleted lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001076", "lbl" : "oxic lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is primarily composed of oxic water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "oxygenated lake" }, { "pred" : "hasRelatedSynonym", "val" : "aerobic lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001077", "lbl" : "lake with an oxic hypolimnion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which has a hypolimnion composed primarily of oxic water.", "xrefs" : [ "http://dx.doi.org/10.4319/lo.1984.29.1.0111" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "aerobic lake" }, { "pred" : "hasRelatedSynonym", "val" : "oxic lake" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001078", "lbl" : "weather", "type" : "CLASS", "meta" : { "definition" : { "val" : "Environmental variability which inheres in an astronomical body part or in outer space.", "xrefs" : [ "https://en.wikipedia.org/wiki/Space_weather", "https://en.wikipedia.org/wiki/Weather" ] }, "comments" : [ "This class refers to all weather, including atmospheric and space weather. Please use a subclass for more specificity." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001079", "lbl" : "atmospheric weather", "type" : "CLASS", "meta" : { "definition" : { "val" : "Weather which inheres in an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Weather" ] }, "comments" : [ "This class refers to the common usage of \"weather\", referencing the state of a (part of) an astronomical body's atmosphere." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001080", "lbl" : "space weather", "type" : "CLASS", "meta" : { "definition" : { "val" : "Weather which inheres in outer space.", "xrefs" : [ "https://en.wikipedia.org/wiki/Space_weather" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001081", "lbl" : "environmental variability", "type" : "CLASS", "meta" : { "definition" : { "val" : "A condition which inheres in an environmental system by virtue of that system undergoing variation in its composition, the distribution of the qualities its components bear, and/or in the processes which occur within it and which it participates in." }, "comments" : [ "This class is very general, but the nature of environmental variability is indeed quite variable. This class may be refined once we have more subclasses to consider." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001082", "lbl" : "climate", "type" : "CLASS", "meta" : { "definition" : { "val" : "The disposition of an environmental system, particularly those influencing atmospheres, to manifest a cyclic pattern of weather over time.", "xrefs" : [ "https://en.wikipedia.org/wiki/Climate" ] }, "comments" : [ "Climate is commonly defined as the weather averaged, or otherwise summarised, over a period of time much longer than the duration of any phenomenon that constitutes weather. The standard averaging period is 30 years, but other periods may be used depending on the purpose." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The current alignment of \"climate\" under BFO:disposition is drawing from its very useful etymology (Ancient Greek klima, meaning inclination). 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which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particulates" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "formation of liquid droplets in an atmosphere" }, { "pred" : "hasRelatedSynonym", "val" : "formation of liquid particles in an atmosphere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001088", "lbl" : "aerosolised liquids", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.", "xrefs" : [ "https://en.wikipedia.org/wiki/Aerosol" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "liquid aerosol" } ], "xrefs" : [ { "val" : "SWEETRealm:Aerosol" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001089", "lbl" : "aerosolised solids", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aerosol 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"val" : "formation of solid particles from gaseous material in an atmosphere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001091", "lbl" : "formation of a liquid aerosol from gaseous material in an atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particulates" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "atmospheric formation of a liquid aerosol" }, { "pred" : "hasExactSynonym", "val" : "formation of a liquid aerosol in an atmosphere" }, { "pred" : "hasExactSynonym", "val" : "formation of a liquid aerosol in the atmosphere" }, { "pred" : "hasRelatedSynonym", "val" : "formation of liquid droplets from gaseous material in an atmosphere" }, { "pred" : "hasRelatedSynonym", "val" : "formation of liquid particles from gaseous material in an atmosphere" } ] } }, { "id" : 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"https://en.wikipedia.org/wiki/Plate_tectonics" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001095", "lbl" : "divergent tectonic movement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which pieces of a planetary crust and uppermost mantle move away from one another.", "xrefs" : [ "https://en.wikipedia.org/wiki/Divergent_boundary", "https://en.wikipedia.org/wiki/List_of_tectonic_plates", "https://en.wikipedia.org/wiki/Plate_tectonics" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "constructive tectonic movement" }, { "pred" : "hasExactSynonym", "val" : "extensional tectonic movement" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001096", "lbl" : "transform tectonic movement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which pieces of a planetary crust and uppermost mantle move along each other in a predominantly horizontal manner, either in a sinistral (left lateral) or dextral (right lateral) direction.", "xrefs" : [ "https://en.wikipedia.org/wiki/List_of_tectonic_plates", "https://en.wikipedia.org/wiki/Plate_tectonics", "https://en.wikipedia.org/wiki/Transform_fault" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "conservative tectonic movement" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001097", "lbl" : "tectonic plate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of a lithosphere which is separated by other such parts by geographic faults or similar geomorphological discontinuities.", "xrefs" : [ "https://en.wikipedia.org/wiki/List_of_tectonic_plates" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001098", "lbl" : "tectonic plate boundary", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geomorphological feature which is formed where two or more tectonic plates move towards, away from, or along one another, resulting in deformation of the lithosphere.", "xrefs" : [ 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"CLASS", "meta" : { "definition" : { "val" : "A rockslide is a process whereby a large mass of rock moves down a hill or a mountainside.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mass_wasting" ] }, "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "rockslip" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001109", "lbl" : "Karman vortex street", "type" : "CLASS", "meta" : { "definition" : { "val" : "A succession of swirling vortices caused by the unsteady separation of flow of a fluid around one or more blunt bodies.", "xrefs" : [ "https://en.wikipedia.org/wiki/K%C3%A1rm%C3%A1n_vortex_street" ] }, "comments" : [ "These vortices are responsible for such phenomena as the \"singing\" of suspended telephone or power lines, and the vibration of a car antenna at certain speeds." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Kármán vortex street" }, { "pred" : "hasExactSynonym", "val" : "von Kármán vortex street" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001110", "lbl" : "ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which includes both living and non-living components.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ecosystem" ] }, "comments" : [ "This class will be primarily filled by inference, any environmental system which necessarily includes living parts should be autoclassified here." ], "xrefs" : [ { "val" : "LTER:173" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001111", "lbl" : "fossil worm burrow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A channel which was formed as a result of an annelid burrowing through soil, where organic residues lining the burrow have subsequently initiated fossilization.", "xrefs" : [ "https://doi.org/10.1371/journal.pone.0070920" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001112", "lbl" : "fossilization of organic material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which organic substances are replaced with mineral substrances, maintaining part of their anatomical organisation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fossil#Fossilization_processes" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "fossilization" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001113", "lbl" : "forage material", "type" : "CLASS", "meta" : { "definition" : { "val" : "Material which is primarily conposed of the vegetation present in tended pastures: mainly grasses, with an interspersion of legumes and other forbs.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pasture" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "forage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001114", "lbl" : "feed storage space", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical space, which may or may not be in a construction, which is used to store animal feed for agricultural purposes.", "xrefs" : [ "http://orcid.org/0000-0002-8844-9165" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "feed storage" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This should be moved to \"zone\", and inference should be used to link to agricultural feature." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001115", "lbl" : "manure storage space", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical space, which may or may not be in a construction, which is used to store animal manure for agricultural purposes.", "xrefs" : [ "http://orcid.org/0000-0002-8844-9165" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "manure storage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001116", "lbl" : "bovine dairy liquid manure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Manure which has been collected directly or indirectly from dairy cattle, as from flushing of manure from concrete feed lanes, free stalls, and milking facilities.", "xrefs" : [ "http://manuremanagement.ucdavis.edu/files/134369.pdf", "http://orcid.org/0000-0002-8844-9165" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001117", "lbl" : "poultry manure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Manure which is composed primarily of the feces of poultry.", "xrefs" : [ "http://orcid.org/0000-0002-8844-9165" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001118", "lbl" : "heat-treated animal manure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Manure which has been subjected to heat treatment for solidification and/or sterilization purposes.", "xrefs" : [ "http://orcid.org/0000-0002-8844-9165" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001119", "lbl" : "composted animal manure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Manure which has been subjected to a natural process of 'rotting' or decomposition of its organic matter content by microorganisms under controlled conditions.", "xrefs" : [ "http://orcid.org/0000-0002-8844-9165" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001120", "lbl" : "animal manure product", "type" : "CLASS", "meta" : { "definition" : { "val" : "A product which is composed primarily of animal manure that has been heat treated and packaged as a product for commercial or consumer use.", "xrefs" : [ "http://orcid.org/0000-0002-8844-9165" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001121", "lbl" : "plant matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organic material which is primarily composed of plant structures, living or dead." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001122", "lbl" : "gas planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet which is primarily composed of hydrogen and helium.", "xrefs" : [ "http://solarsystem.nasa.gov/planets/whatisaplanet", "https://en.wikipedia.org/wiki/List_of_planet_types", "https://en.wikipedia.org/wiki/Planet" ] }, "comments" : [ "Gas giants are composed of about 90% hydrogen and helium. Jupiter and Saturn are examples of gas giants." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001123", "lbl" : "dwarf gas planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gas planet which 1) is considerably smaller than a gas giant and 2) has a rocky core around which a thick envelope primarily composed of hydrogen, helium, and smaller proportions of volatiles.", "xrefs" : [ "http://solarsystem.nasa.gov/planets/whatisaplanet", "https://en.wikipedia.org/wiki/Gas_dwarf", "https://en.wikipedia.org/wiki/List_of_planet_types", "https://en.wikipedia.org/wiki/Planet" ] }, "comments" : [ "The physical make-up of gas dwarfs limit their size, which gravitate towards a total radius between 1.7 and 3.9 Earth-radii." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001124", "lbl" : "giant gas planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gas planet which has mass and size comparable to Jupiter and Saturn.", "xrefs" : [ "http://solarsystem.nasa.gov/planets/whatisaplanet", "https://en.wikipedia.org/wiki/Gas_giant", "https://en.wikipedia.org/wiki/List_of_planet_types", "https://en.wikipedia.org/wiki/Planet" ] }, "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gas giant" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The definition should be revised to avoid relativisation to instances." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001125", "lbl" : "ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure." }, "comments" : [ "Note that ice may be formed at very high temperatures, due to gravitational effects and/or pressure." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001126", "lbl" : "astrogeological ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astrogeological volatile which is composed primarily of chemical compounds with freezing points above an approximate threshold of 100 Kelvin.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_giant" ] }, "comments" : [ "This is a term native to the fields of planetary science and astrophysics. Water, ammonia, and methane are considered \"ices\" with freezing points of 273 K, 195 K, and 91 K, respectively." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ice" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001127", "lbl" : "ice giant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A giant planet which is primarily composed of elements heavier than hydrogen and helium, volatile chemical compounds with freezing points above about 100 Kelvin.", "xrefs" : [ "http://solarsystem.nasa.gov/planets/whatisaplanet", "https://en.wikipedia.org/wiki/Ice_giant", "https://en.wikipedia.org/wiki/List_of_planet_types", "https://en.wikipedia.org/wiki/Planet" ] }, "comments" : [ "Uranus and Neptune are considered ice giants, a separate class relative to the gas giants, Jupiter and Saturn. Ice giants consist of only about 20% hydrogen and helium in mass. A large portion of the mass in an ice giant was incorporated by the capture of ice (as defined in planetary science) or as gas trapped in water ice." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001128", "lbl" : "mini-Neptune", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gas planet which has an atmosphere composed of hydrogen and helium - probably with deep layers of ice, rock or liquid oceans (made of water, ammonia, a mixture of both, or heavier volatiles) - and a small core made of low-density volatiles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Gas_dwarf", "https://en.wikipedia.org/wiki/Mini-Neptune" ] }, "comments" : [ "These planets have a mass up to 10 Earth masses, notably smaller than Uranus or Neptune, which are about 14.5 and 17 Earth masses, respectively." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "transitional planet" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001129", "lbl" : "super-Jupiter", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical object which is more massive than the planet Jupiter.", "xrefs" : [ "https://en.wikipedia.org/wiki/Super-Jupiter" ] }, "comments" : [ "Due to their immense size, super-Jupiter class objects straddle the space between planets and other objects such as brown dwarfs. While they may be more massive than Jupiter, super-Jupiters tend to be the same approximate size, with increasing density as their mass increases up to about 80 Jupiter masses." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001130", "lbl" : "gravitational motion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which one or more entities move along geodesics in a region of spacetime that has been sufficiently curved towards an entity with sufficient mass and/or energy.", "xrefs" : [ "https://en.wikipedia.org/wiki/Gravity" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001131", "lbl" : "hot Jupiter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A giant gas planet which has a jovian-scale mass (0.36–11.8 Jupiter masses), a short orbital period (1.3–111 Earth days), and which is close to the star it orbits, resulting in extreme and exotic atmospheric properties." }, "comments" : [ "It is assumed that the mass of a hot Jupiter cannot be greater than approximately 13.6 Jupiter masses, beyond which the planet would start burning deuterium and become a brown dwarf." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epistellar jovian" }, { "pred" : "hasExactSynonym", "val" : "pegasean planet" }, { "pred" : "hasExactSynonym", "val" : "pegasid" }, { "pred" : "hasExactSynonym", "val" : "roaster planet" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001132", "lbl" : "hot Neptune", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gas planet which has a mass similar to that of Neptune or Uranus and which closely orbits its star (normally at a distance less than 1 Astronomical Unit).", "xrefs" : [ "https://en.wikipedia.org/wiki/Hot_Neptune" ] }, "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hoptune" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Whether this should be classified as a gas planet or an ice giant must be explored." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001133", "lbl" : "mega-Earth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A terrestrial exoplanet which is at least ten times the mass of Earth.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mega-Earth" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001134", "lbl" : "super-Earth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A terrestrial planet which has a mass higher than Earth's, but substantially below the masses of Uranus and Neptune (15 and 17 Earth masses, respectively).", "xrefs" : [ "https://en.wikipedia.org/wiki/Super-Earth" ] }, "comments" : [ "The upper bound of a super-Earth's mass is generally agreed on as 10 Earth masses. In general, super-Earths are defined exclusively by their masses, and the term does not imply temperatures, compositions, orbital properties, habitability, or environments." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001135", "lbl" : "desert planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A terrestrial planet which has a surface dominated by hot deserts." }, "comments" : [ "This class of planet is still mostly theoretical." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dry planet" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001136", "lbl" : "ocean planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ocean_planet" ] }, "comments" : [ "While this planetary form is still mostly theoretical, strong candidates exist such as the extrasolar planet GJ 1214 b and ocean planet candidate Kepler-22b." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "aquaplanet" }, { "pred" : "hasExactSynonym", "val" : "panthalassic planet" }, { "pred" : "hasExactSynonym", "val" : "water world" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "An axiom to express that the planet has a 'substantial' proportion of its mass in the form of water wound enhance this class." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001137", "lbl" : "ice planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_planet" ] }, "comments" : [ "While this planetary form is still mostly theoretical, strong candidates exist such as OGLE-2005-BLG-390Lb, OGLE-2013-BLG-0341L b and MOA-2007-BLG-192Lb. Pluto was considered an ice planet until its reclassification in 2006 CE. Surface temperatures of ice planets would have to be below 260 K (−13°C) if composed primarily of water, below 180 K (−93°C) if primarily composed of CO2 and ammonia, and below 80 K (−193°C) if composed primarily of methane." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cryoplanet" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001138", "lbl" : "carbon dioxide ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ice which is primarily composed of carbon dioxide.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice" ] }, "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "dry ice" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001139", "lbl" : "methane ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ice which is primarily composed of methane.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001140", "lbl" : "ammonia ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ice which is primarily composed of ammonia.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001141", "lbl" : "carbon monoxide ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ice which is primarily composed of carbon monoxide.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001142", "lbl" : "iron planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet which in primarily composed of an iron-rich core with little to no mantle", "xrefs" : [ "https://en.wikipedia.org/wiki/Iron_planet" ] }, "comments" : [ "Mercury is the largest iron planet in the Solar System, the other terrestrial planets being composed of silicate rocks. Some extrasolar planet candidates that may be composed mainly of iron are KOI-1843 b,[5] Kepler-70b and Kepler-10b." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cannonball planet" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001143", "lbl" : "lava planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet which has a surface layer that nearly completely or completely covered by lava, and which has a substantial portion of its mass composed of lava.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lava_planet" ] }, "comments" : [ "This class of planets is still mostly theoretical, however, lava planets are thought plausible shortly after a terrestrial planet is formed, soon after a terrestrial planet has suffered a large collision event, or if a terrestrial planet is orbiting very close to its star, causing intense irradiation and tidal forces. Likely lava exoplanets include COROT-7b, Kepler-10b, Alpha Centauri Bb, and Kepler-78b." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001144", "lbl" : "sub-Earth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A terrestrial planet which has a mass smaller than Earth's, such that 1) it lacks a magnetic field strong enough to shield its atmosphere from erosion by stellar wind and 2) it has comparatively short periods of geological activity unless it is subject to gravitational tidal forces from a much more massive object.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sub-Earth" ] }, "comments" : [ "The first sub-Earths were discovered by the Kepler Orbiting Observatory space telescope on 2012-01-10, orbiting the star Kepler-42. As of June 2014, Kepler has 45 confirmed planets that are smaller than Earth, with 17 of them being smaller than 0.8 Earth radii. In addition, there are over 310 planet candidates with an estimated radius of less than 1 Earth radius, with 135 of them being smaller than 0.8 Earth radii." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001145", "lbl" : "chthonian planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet which is formed as a result of a gas giant's hydrogen and helium atmosphere, as well as its outer layers, being stripped away by a stellar wind through photoevaporation and hydrodynamic escape.", "xrefs" : [ "https://en.wikipedia.org/wiki/Chthonian_planet" ] }, "comments" : [ "This class is largely theoretical, however, some likely candidates exist. HD 209458 b and Gliese 436b are examples of a gas giants that are in the process of having their atmospheres stripped away. COROT-7b is the first exoplanet found that might be chthonian." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cthonian planet" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001146", "lbl" : "photoevaporation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which energetic radiation ionises gas and causes it to disperse away from the ionising source.", "xrefs" : [ "arXiv:1604.05220", "https://en.wikipedia.org/wiki/Chthonian_planet#cite_note-4", "https://en.wikipedia.org/wiki/Photoevaporation" ] }, "comments" : [ "This process is responsible for the stripping away of gases from the atmosphere of planets and related bodies by acceleration on interaction with high energy photons and other electromagnetic radiation." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001147", "lbl" : "helium planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gas planet which has an atmosphere composed primarily of helium.", "xrefs" : [ "https://en.wikipedia.org/wiki/Helium_planet" ] }, "comments" : [ "A helium planet might form via hydrogen evaporation from a gaseous planet orbiting close to a star. Low-mass white dwarfs may transition into objects which are essentially helium planets by hydrogen depletion through mass transfer to a massive object such as a neutron star. Gliese 436 b is a candidate helium planet." ], "subsets" : [ "\"envoAstro\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The placement of this class assumes that some traces of hydrogen are left in the atmosphere. If this is not the case, the axiom on gas planet must be updated." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001148", "lbl" : "planetesimal", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body which 1) is held together by its own gravity, 2) can attract other, similar bodies through mutual gravitational influence, and 3) has orbital dynamics that are not significantly affected by gas drag.", "xrefs" : [ "https://en.wikipedia.org/wiki/Planetesimal" ] }, "comments" : [ "In the Solar nebula, planetesimals are usually larger than approximately 1 kilometer." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001149", "lbl" : "protoplanet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical object that forms within a protoplanetary disc when planetesimals and other solid debris aggregate and, due to gravitational forces, fuse and initiate internal melting to produce a differentiated interior.", "xrefs" : [ "https://en.wikipedia.org/wiki/Protoplanet" ] }, "comments" : [ "Protoplanets are thought to form out of kilometer-sized planetesimals that gravitationally perturb each other's orbits and collide, gradually coalescing into the dominant planets. The exact sequence of events which lead to planetary formation from protoplanets is not fully understood." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "planetary embryo" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "State that this is derived from a collection of planetesimals." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001150", "lbl" : "protoplanetary disk", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical object which is composed of dense gas and dust rotating around a young newly formed star, a T Tauri star, or a Herbig Ae/Be star in a disk-shaped configuration.", "xrefs" : [ "https://en.wikipedia.org/wiki/Protoplanetary_disk" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001151", "lbl" : "proplyd", "type" : "CLASS", "meta" : { "definition" : { "val" : "A protoplanetary disk which is externally illuminated and undergoing photoevaporation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Proplyd", "https://en.wikipedia.org/wiki/Protoplanetary_disk" ] }, "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ionized protoplanetary disk" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001152", "lbl" : "mesoplanet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet which is smaller than Mercury but larger than Ceres.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mesoplanet" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001153", "lbl" : "circumbinary planet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planet which orbits two stars.", "xrefs" : [ "https://en.wikipedia.org/wiki/Circumbinary_planet" ] }, "comments" : [ "Because of the short orbits of some binary stars, the only way for planets to form is by forming outside the orbit of the two stars." ], "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001154", "lbl" : "volatile astrogeological material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volatiles" ] }, "comments" : [ "Examples include nitrogen, water, carbon dioxide, ammonia, hydrogen, methane and sulfur dioxide. In astrogeology, these compounds, in their solid state, often comprise large proportions of the crusts of moons and dwarf planets." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "volatile" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add and axiomatise with moon and lunar crust" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001155", "lbl" : "astrogeological gas", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.", "xrefs" : [ "https://en.wikipedia.org/wiki/Volatiles" ] }, "comments" : [ "This is a term native to the fields of planetary science and astrophysics. Hydrogen has a boiling point of 20.271 Kelvin and a melting point of 13.99 Kelvin. Helium has a boiling point of 4.222 Kelvin and a melting point of 0.95 Kelvin." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "gas" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001156", "lbl" : "refractory astrogeological material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material which is composed primarily of chemical elements and compounds which have equilibrium condensation temperatures above approximately 1300 Kelvin and which are part of the crust or atmosphere of a moon or planet.", "xrefs" : [ "https://en.wikipedia.org/wiki/Refractory_(planetary_science)" ] }, "comments" : [ "The refractory group includes elements and compounds like metals and silicates (commonly termed rocks) which make up the bulk of the mass of the terrestrial planets and asteroids in the inner belt." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "refractory material" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add and axiomatise with moon and lunar crust" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001157", "lbl" : "atmospheric escape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which gases that constitute a planetary atmosphere escape that planet's gravitational field and move away into outer space.", "xrefs" : [ "https://en.wikipedia.org/wiki/Atmospheric_escape" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001158", "lbl" : "hydrodynamic escape", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric escape process during which atoms that are parts of a planetary atmosphere escape into outer space through numerous collisions with lighter atoms in that atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Atmospheric_escape" ] }, "subsets" : [ "\"envoAstro\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001159", "lbl" : "cirrus homogenitus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which is cirriform and is formed by condensation events centred on an aircraft's contrail.", "xrefs" : [ "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001160", "lbl" : "cirrus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) has been shaped into detached fibrous filaments, 2) is almost exclusively composed of ice crystals, 3) is located in the high level of the atmosphere (high étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-cirrus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://cloudatlas.wmo.int/clouds-genera.html", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "When present in aggregates, individual cirrus clouds are organised in patches or narrow bands. When organised in sheets of fibres they can give a silky sheen. When well-illuminated by sunlight (excluding during sunrise and sunset) cirrus clouds appear white or mostly white. Absence of any precipitation." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "(Eis)-Federwolke" }, { "pred" : "hasExactSynonym", "val" : "Cirruswolke" }, { "pred" : "hasExactSynonym", "val" : "Zirruswolke" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add more PATO qualities once they have been added to PATO." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "Ci" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001161", "lbl" : "obsolete newCloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "OBSOLETE A cloud which", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "created in error" ], "subsets" : [ "\"envoAtmo\"" ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001162", "lbl" : "IUCN strict nature reserve", "type" : "CLASS", "meta" : { "definition" : { "val" : "An IUCN protected area in which human visitation, use and impacts are strictly controlled and limited to ensure protection and conservation of natural biodiversity and/or geodiversity, natural ecosystem assemblages and processes, and any associated cultural and spiritual values.", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-ia-strict-nature-reserve" ] }, "comments" : [ "Note that this ENVO class is not authoritative: see the associated IUCN references for a complete definition of all Protected Areas. Previous anthropogenic impacts (e.g. by early human settlement) may be present in these sites; these should be reversible by either natural processes or brief restorative interventions. Note that this ENVO class is not authoritative: see the associated IUCN references for a complete definition of all Protected Areas." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "strict nature reserve", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-ia-strict-nature-reserve" ] } ], "xrefs" : [ { "val" : "IUCN-PACS:Ia" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001163", "lbl" : "IUCN wilderness area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An IUCN protected area which 1) is dominated by natural ecosystems, 2) is sufficiently large to allow those ecosystems to function and develop without local anthropogenic perturbation, 3) is managed to prevent perturbations by proximate or local anthropisation, including those caused by local and/or indigenous human communities or human visitation.", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-ib-wilderness-area" ] }, "comments" : [ "Note that this ENVO class is not authoritative: see the associated IUCN references for a complete definition of all Protected Areas. These areas exclude permanent built infrastructure, activities by extractive industries, commercial or intensive agriculture, extensive access by motor vehicles, unregulated visitation supported by any infrastructure, as well as other activities that may lead to significant ecosystem perturbations." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "wilderness area", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-ib-wilderness-area" ] } ], "xrefs" : [ { "val" : "IUCN-PACS:Ib" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001164", "lbl" : "geodiversity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.", "xrefs" : [ "https://en.wikipedia.org/wiki/Geodiversity" ] }, "comments" : [ "Materials which are usually assessed when appraising geodiversity include minerals, rocks, sediments, fossils, soils and water. Landforms factored into geodiversity metrics typically include folds, faults, and other expressions of morphology or relations between units of earth material. Natural processes that are included in measures of geodiversity are those which either maintain or change materials or geoforms, including tectonics, sediment transport, and pedogenesis. Geodiversity does not usually factor in anthropogenic entities." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001165", "lbl" : "IUCN natural monument or feature", "type" : "CLASS", "meta" : { "definition" : { "val" : "An IUCN protected area which includes a primarily natural formation designated to be of high natural heritage value and the environmental systems which it determines (e.g. the spray zone of a waterfall monument).", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-iii-natural-monument-or-feature" ] }, "comments" : [ "Note that this ENVO class is not authoritative: see the associated IUCN references for a complete definition of all Protected Areas. Further, note that the use of \"natural\" in the IUCN definition may allow for some anthropisation such as the presence of cave dwellings or spiritual sites. These areas tend to be smaller than other IUCN protected areas and are sites of frequent human visitation and high tourism value. They often serve to conserve natural heritage in land- or seascapes which have otherwise been anthropised. Frequently, these areas have high spiritual and cultural value as well as bio- and geodiversity value. It is not clear what would happen to the status of a IUCN Category III protected area if its key natural monument dies or degrades. IUCN acknowledges that larger ecosystem areas may need protection or management to sustain the area given Category III protection." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "natural monument" } ], "xrefs" : [ { "val" : "IUCN-PACS:III" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001166", "lbl" : "IUCN habitat/species management area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An IUCN protected area within which the habitats of or ecosystems used by floral and faunal species deemed to be of international, national, or local importance are maintained, conserved, or restored such that their composition and functional integrity are maintained.", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-iv-habitatspecies-management-area" ] }, "comments" : [ "Note that this ENVO class is not authoritative: see the associated IUCN references for a complete definition of all Protected Areas. Note that many Category IV sites require frequent interventions to maintain habitats for the species conserved, particularly as many of these areas are ecosystem fragments which are unable to sustain themselves. Additionally, many are used for public outreach, education, and recreation, implying regular human visitation. What qualifies a species as important is variable and often ill-defined." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "habitat management area" }, { "pred" : "hasRelatedSynonym", "val" : "species management area" } ], "xrefs" : [ { "val" : "IUCN-PACS:IV" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Clarify what is encompassed by floral and faunal. Do microbial and fungal species (e.g. of importance to many marine systems) fall within these categories? Further, create subclasses for habitat and species conservation separately." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001167", "lbl" : "ecosystem fragment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which has been causally isolated from a larger ecosystem within which it was previously embedded, such that the direct exchange of materials, resources, and energy between these systems is severely or entirely curtailed." }, "comments" : [ "Often, ecosystem fragments are unable to sustain themselves without human intervention and management as they are not large enough to perform self-sustaining functions (e.g. nutrient recycling) or hold sufficient ecological resources such as genetic diversity of populations." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001168", "lbl" : "ecosystem fragmentation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which one or more parts of an ecosystem become causally isolated such that the direct flow or exchange of materials, resources, and energy between a given fragment and the remainder of the original system is severely curtailed or entirely halted.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ecosystem_decay", "https://en.wikipedia.org/wiki/Habitat_fragmentation", "https://en.wikipedia.org/wiki/Population_fragmentation" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001169", "lbl" : "area protected according to IUCN guidelines", "type" : "CLASS", "meta" : { "definition" : { "val" : "A protected area in which management objectives have been declared, by a local governing body or authority, to adhere to the guidelines set forth by the International Union for the Conservation of Nature (IUCN).", "xrefs" : [ "https://www.iucn.org/sites/dev/files/import/downloads/iucn_assignment_1.pdf" ] }, "comments" : [ "The international recognition of an area as an IUCN protected area generally depends on the assigning government or authority reporting its assignments to the United Nations Environment Programme World Conservation Monitoring Centre." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Axiomatise with SDGIO classes once available: https://github.com/SDG-InterfaceOntology/sdgio/issues/114" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "IUCN protected area" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001170", "lbl" : "active ecosystem management process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which an ecosystem, its parts, or the processes it participates in are modified by human intervention to accomplish an objective.", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-iv-habitatspecies-management-area" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ecosystem management" }, { "pred" : "hasRelatedSynonym", "val" : "Umweltmaßnahme", "xrefs" : [ "www.awi.de/internas" ] }, { "pred" : "hasRelatedSynonym", "val" : "environmental management" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001171", "lbl" : "conservation-focused active ecosystem management process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An active management process which has the conservation of an ecosystem, or a part thereof, as its primary objective.", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-iv-habitatspecies-management-area" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Umweltschutz", "xrefs" : [ "www.awi.de/internas" ] }, { "pred" : "hasRelatedSynonym", "val" : "conservation action" }, { "pred" : "hasRelatedSynonym", "val" : "conservation process" }, { "pred" : "hasRelatedSynonym", "val" : "nature conservation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001172", "lbl" : "IUCN protected landscape/seascape", "type" : "CLASS", "meta" : { "definition" : { "val" : "An IUCN protected area which 1) includes entities that have been deemed to be of high scenic quality, 2) is composed of a historically stable assemblage of causally interlinked natural and anthropised ecosystems that provides cultural ecosystem services, and 3) hosts traditional and sustainable human activities.", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-v-protected-landscapeseascape" ] }, "comments" : [ "Note that this ENVO class is not authoritative: see the associated IUCN references for a complete definition of all Protected Areas. The IUCN note that the integrity of balanced natural and anthropogenic ecosystems may be compromised in some Category V areas, as long as \"there is reasonable hope of restoring that integrity\"." ], "xrefs" : [ { "val" : "IUCN-PACS:V" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001173", "lbl" : "sacred site", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fiat object part which contains entities of high spiritual or cultural significance to one or more human groups." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001174", "lbl" : "ecosystem decay", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which an ecosystem fragment loses its system integrity, with many of its resident ecological populations 1) losing their habitats, 2) undergoing a loss of functional and phylogenetic diversity, and 3) undergoing a subsequent genetic destabilisation through inbreeding.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ecosystem_decay" ] }, "comments" : [ "This process may be caused by direct anthropisation (i.e. the fragmentation of ecosystems due to the establishment of cropland) or by more natural events such as forest fires or erosion of land bridges." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001175", "lbl" : "habitat fragmentation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem fragmentation process during which discontinuities emerge in the habitats of one or more ecological populations.", "xrefs" : [ "https://en.wikipedia.org/wiki/Habitat_fragmentation" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001176", "lbl" : "environment associated with an aquatic invertebrate", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which has its properties and composition largely determined by the presence of a metazoan which lacks a vetebral column and which has a habitat that is found in an aquatic environmental system." }, "subsets" : [ "\"envoMeo\"", "\"envoOmics\"" ], "xrefs" : [ { "val" : "http://purl.jp/bio/11/meo/MEO_0000871" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001177", "lbl" : "arable land", "type" : "CLASS", "meta" : { "definition" : { "val" : "Land which is regularly manipulated by human activities, such as plowing or tilling, in order to grow crops.", "xrefs" : [ "http://ec.europa.eu/eurostat/statistics-explained/index.php/Glossary:Arable_land", "https://en.wikipedia.org/wiki/Arable_land" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Consider moving axioms to the quality 'arable' directly. The discontinuous quality on tillage can likely be improved or refined. Also, add axioms for ploughing once it is added to AgrO: https://github.com/AgriculturalSemantics/agro/issues/34" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001178", "lbl" : "pasturable land", "type" : "CLASS", "meta" : { "definition" : { "val" : "Land which hosts a community of herbaceous plants - such as grasses and forbs - upon which animals may graze.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pasture" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000123" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See this issue for requests regarding surrounding semantics of grazing: https://github.com/AgriculturalSemantics/agro/issues/32" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001179", "lbl" : "cnidarian-associated environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system determined by a cnidarian or part of a cnidarian." }, "subsets" : [ "\"envoMeo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001180", "lbl" : "Bondon cheese environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which has its properties and composition determined by a portion of Bondon cheese." }, "subsets" : [ "\"envoMeo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class was cross-axiomatised with FOODON, but recent changes in FOODON's alignment (e.g. Bondon cheese as a subclass of an information artifact) have caused reasoning errors. We await FOODON to stabilise these semantics before attempting a reimport and will work with them to this end." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001181", "lbl" : "rhizoplane", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer which is composed of the external surface of a root, together with closely adhering soil particles and debris", "xrefs" : [ "https://www.merriam-webster.com/dictionary/rhizoplane" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001182", "lbl" : "tended pasturable land", "type" : "CLASS", "meta" : { "definition" : { "val" : "Pasturable land which is maintained by human activities in order to provide grazing oppoturnities for livestock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pasture" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001183", "lbl" : "arable or pasturable land", "type" : "CLASS", "meta" : { "definition" : { "val" : "Land which either hosts plant communities upon which animals may graze has been manipulated by tilling, ploughing, or other human activity for the purposes of seed sowing or planting crops." }, "comments" : [ "This class does not refer to the land that is potenitally cultivable, only referencing land that is being managed for cultivation. This class has been created to support the FAO definition of arable lands in FAOSTAT." ], "xrefs" : [ { "val" : "http://aims.fao.org/aos/agrovoc/c_18948.html" }, { "val" : "http://eurovoc.europa.eu/drupal/?q=request&uri=http://eurovoc.europa.eu/4448" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add semantics to support \"land under market and kitchen gardens and land temporarily fallow (less than five years). The abandoned land resulting from shifting cultivation is not included in this category.\"" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001184", "lbl" : "arable", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhereing in a bearer by virtue of the bearer being periodically and mechanically manipulated to loosen and mix any soil which it has as a part.", "xrefs" : [ "https://en.wikipedia.org/wiki/Arable_land" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001185", "lbl" : "acidic soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has increased levels of molecules or ions capable of donating a hydron (proton or hydrogen ion) to other chemical entities, or, alternatively, capable of forming covalent bonds with other chemicals via the acceptance of an electron pair, resulting in a bulk pH measurement of less than 7.", "xrefs" : [ "https://en.wikipedia.org/wiki/Acid" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001186", "lbl" : "acidic volcanic ash", "type" : "CLASS", "meta" : { "definition" : { "val" : "Volcanic ash which has increased levels of molecules or ions capable of donating a hydron (proton or hydrogen ion) to other chemical entities, or, alternatively, capable of forming covalent bonds with other chemicals via the acceptance of an electron pair, resulting in a bulk pH measurement of less than 7." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001187", "lbl" : "holothurian digestive tract", "type" : "CLASS", "meta" : { "definition" : { "val" : "A digestive tract environment which has its properties and dynamics determined by the digestive tract of an echinoderm from the class Holothuroidea.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_cucumber" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sea cucumber gut" }, { "pred" : "hasExactSynonym", "val" : "sea cucumber digestive tract" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001188", "lbl" : "holothurian digestive tract contents", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid which is present in the digestive tract of a member of the Holothuroidea." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001189", "lbl" : "algal material", "type" : "CLASS", "meta" : { "comments" : [ "An organic material which is primarily composed of living or dead algae, along with their exudates." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This class will be axiomatised with \"alga\" once an approach to handle this term's ambiguous semantics has been agreed with PCO." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001190", "lbl" : "brown sea ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sea ice which has a brown colouration, either due to 1) the presence of pigments which are or were contained in the members of ecological assemblages, such as algal communities, living or trapped within the ice or 2) due to the presence of trapped sediments.", "xrefs" : [ "http://dx.doi.org/10.1016/j.csr.2017.04.010", "http://dx.doi.org/10.1038/nrmicro3522", "http://dx.doi.org/10.1371/journal.pone.0122418", "https://github.com/EnvironmentOntology/envo/issues/564" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brownish colored sea ice" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001191", "lbl" : "water surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "The surface layer of a volume of water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "surface of a body of water" }, { "pred" : "hasExactSynonym", "val" : "water body surface" } ], "xrefs" : [ { "val" : "EcoLexicon:surface_water" }, { "val" : "SWEETRealm:SurfaceWater" }, { "val" : "https://en.wikipedia.org/wiki/Surface_water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001192", "lbl" : "sediment surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "The surface layer of a mass of sediment." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "surface of a sedimentary mass" }, { "pred" : "hasExactSynonym", "val" : "surface sediment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001193", "lbl" : "water-based planetary surface", "type" : "CLASS", "meta" : { "comments" : [ "This includes the surface layers of all volumes of water exposed to space or the planet's atmosphere." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "A liquid planetary surface which is composed primarily of water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Planetary_surface" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001194", "lbl" : "magnetosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A site in which charged particles are influenced by an astronomical body's magnetic field.", "xrefs" : [ "https://en.wikipedia.org/wiki/Magnetosphere" ] }, "comments" : [ "Magentospheres are generated by the motion of active hot iron and nickle or metallic planetary cores or by the interactions of plasma in stars.. The magnetic field near the surface of many astronomical bodies resembles that of a dipole. The field lines farther away from the surface can be significantly distorted by the flow of electrically conducting plasma emitted from a nearby star. The structure and behaviour of magnetospheres depend on numerous variables, including the type of astronomical body which generates it, the period of the object's spin, the properties of the axis about which the object spins, the axis of the magnetic dipole, and the magnitude and direction of the flow of stellar wind." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The original definition referenced astronomical objects, however, the text suggests that reference to an astronomical body is more accurate." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001195", "lbl" : "radiation shielding disposition", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental disposition which inheres in an entity that intercepts, attenuates, or blocks radiation." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001196", "lbl" : "cosmic ray shielding disposition", "type" : "CLASS", "meta" : { "definition" : { "val" : "A radiation shielding disposition which inheres in a material or immaterial entity which attenuates or blocks cosmic rays.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cosmic_ray", "https://en.wikipedia.org/wiki/Magnetosphere" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001197", "lbl" : "induced magnetosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A magnetosphere which either 1) cannot withstand the pressure of the stellar wind interacting with it, thus allowing the stellar wind to interact with the ionosphere, atmosphere, or surface of the planet generating it or 2) is formed by the interaction of the stellar wind with an astronomical body unshielded by its own magnetosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Magnetosphere" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The original definition referenced astronomical objects, however, the text suggests that reference to an astronomical body is more accurate." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001198", "lbl" : "intrinsic magnetosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A magnetosphere which shields the body generating it from the stellar wind by withstanding the stellar wind's pressure before it reaches the body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Magnetosphere" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The original definition referenced astronomical objects, however, the text suggests that reference to an astronomical body is more accurate." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001199", "lbl" : "terrestrial environmental zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001200", "lbl" : "anthropised terrestrial environmental zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A terrestrial zone which is bounded by constructed, manufactured, or other anthropogenic material entities." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001201", "lbl" : "marine environmental zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body part which is part of a marine environment." }, "comments" : [ "This class will eventually be populated by inference alone, with its subclasses distributed in more process-linked hierarchies to improve semantic density." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001202", "lbl" : "alluvium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil or sediment which has been eroded and influenced by flowing water and redeposited in a non-marine setting.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alluvium" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001203", "lbl" : "alluvial sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment which has been transported by flowing water and redeposited in a non-marine setting.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alluvial_soil", "https://en.wikipedia.org/wiki/Alluvium" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001204", "lbl" : "alluvial deposit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rock which is formed as a result of the lithification of alluvium.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alluvium" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001205", "lbl" : "lithification", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which sediments compact under pressure, expel connate fluids, and gradually become solid sedimentary rock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lithification" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001206", "lbl" : "grassland ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics.", "xrefs" : [ "https://en.wikipedia.org/wiki/Grassland" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "GRASSLAND", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "grassland", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "Grassland", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasRelatedSynonym", "val" : "down", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "downland", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "downs", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "glade", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "glade", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "grazing area", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasRelatedSynonym", "val" : "grazing area", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasRelatedSynonym", "val" : "herbaceous area", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:grassland" }, { "val" : "FTT:259" }, { "val" : "FTT:760" }, { "val" : "FTT:766" }, { "val" : "Geonames:V.GRSLD" }, { "val" : "LTER:232" }, { "val" : "TGN:21604" }, { "val" : "TGN:54052" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001207", "lbl" : "ranch", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of land used for the herding and grazing of livestock.", "xrefs" : [ "USGS:SDTS" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "ranch", "xrefs" : [ "Geonames:feature" ] }, { "pred" : "hasRelatedSynonym", "val" : "ranch", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "FTT:45" }, { "val" : "FTT:58" }, { "val" : "FTT:59" }, { "val" : "FTT:69" }, { "val" : "Geonames:S.RNCH" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001208", "lbl" : "swamp area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of wetland which overlaps a swamp ecosystem.", "xrefs" : [ "https://en.wikipedia.org/wiki/Swamp" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001209", "lbl" : "wetland ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wetland" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "WETLAND", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasExactSynonym", "val" : "Wetland", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasNarrowSynonym", "val" : "EstuarineWetland", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasNarrowSynonym", "val" : "LacustrineWetland", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasNarrowSynonym", "val" : "MarineWetland", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasNarrowSynonym", "val" : "PalustrineWetland", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasNarrowSynonym", "val" : "RiparianWetland", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasNarrowSynonym", "val" : "TerrestialWetland", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasNarrowSynonym", "val" : "back marsh", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "backswamp", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "backwater", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "barrier flat", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "blanket bog", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "bog", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "bog", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasNarrowSynonym", "val" : "cienaga", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "dismal", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "everglade", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "floating marsh", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "forested wetland", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "marsh", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "mire", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "mire", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "mud flat", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "peat cutting area", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "peatland", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "quagmire", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "quagmire", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "quaking bog", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "riparian area", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "slash", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "slough", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "slough", "xrefs" : [ "Getty:TGN" ] }, { "pred" : "hasNarrowSynonym", "val" : "slough", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "slue", "xrefs" : [ "ADL:FTT" ] }, { "pred" : "hasNarrowSynonym", "val" : "swamp forest", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasNarrowSynonym", "val" : "tulelands", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "moor", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "morass", "xrefs" : [ "USGS:SDTS" ] }, { "pred" : "hasRelatedSynonym", "val" : "muskeg", "xrefs" : [ "USGS:SDTS" ] } ], "xrefs" : [ { "val" : "EcoLexicon:wetland" }, { "val" : "FTT:1001" }, { "val" : "FTT:1060" }, { "val" : "FTT:1061" }, { "val" : "FTT:1118" }, { "val" : "FTT:1180" }, { "val" : "FTT:1190" }, { "val" : "FTT:1206" }, { "val" : "FTT:1207" }, { "val" : "FTT:1226" }, { "val" : "FTT:184" }, { "val" : "FTT:185" }, { "val" : "FTT:228" }, { "val" : "FTT:281" }, { "val" : "FTT:480" }, { "val" : "FTT:716" }, { "val" : "FTT:883" }, { "val" : "FTT:934" }, { "val" : "FTT:945" }, { "val" : "FTT:983" }, { "val" : "Geonames:H.WTLD" }, { "val" : "LTER:630" }, { "val" : "SPIRE:Bog" }, { "val" : "SWEETRealm:Wetland" }, { "val" : "TGN:21301" }, { "val" : "TGN:21304" }, { "val" : "TGN:21305" }, { "val" : "https://en.wikipedia.org/wiki/Wetland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001210", "lbl" : "defence against flooding", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process during which an environmental system is modified to mitigate or nullify the impacts of flooding." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "defense against flooding" }, { "pred" : "hasRelatedSynonym", "val" : "defence against floods" }, { "pred" : "hasRelatedSynonym", "val" : "defense against floods" }, { "pred" : "hasRelatedSynonym", "val" : "flood defence" }, { "pred" : "hasRelatedSynonym", "val" : "flood defence intervention" }, { "pred" : "hasRelatedSynonym", "val" : "flood defense" }, { "pred" : "hasRelatedSynonym", "val" : "flood defense intervention" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001212", "lbl" : "microwave stellar radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stellar radiation process during which electromagnetic waves or their quanta are emitted from a star at wavelengths and frequencies which travel exclusively in a line-of-sight fashion and which may produce molecular rotation and torsion on contact with matter.", "xrefs" : [ "https://www.iso.org/obp/ui/#iso:std:iso:21348", "https://en.wikipedia.org/wiki/Microwave" ] }, "comments" : [ "This definition focuses on the properties of microwaves rather than their wavelength or frequency limits. Considerable ambiguity exists around the wavelength and frequency thresholds of microwaves. The ISO 21348 definition bounds these waves at 1 mm and 15 mm, with frequencies between 100 GHz and 0.225 GHz." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "microwave solar radiation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001213", "lbl" : "radio wave stellar radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stellar radiation process during which electromagnetic waves or their quanta are emitted from a star at wavelengths ranging from millimetre to kilometer scales.", "xrefs" : [ "https://www.iso.org/obp/ui/#iso:std:iso:21348", "https://en.wikipedia.org/wiki/Radio_wave" ] }, "comments" : [ "As with microwaves, considerable variation exists in the delimitation of frequency and wavelength thresholds for radiowaves. The ISO 21348 standard allows a wavelength range of 0.10 mm to 100 m and a frequency range of 300 GHz to 3 MHz. However, much lower thresholds also exist." ], "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "radio wave solar radiation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001214", "lbl" : "infrared stellar radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stellar radiation process during which electromagnetic waves or their quanta are emitted from a star when molecules change their rotational-vibrational movements, usually at wavelengths between 760 nm and 1 mm.", "xrefs" : [ "https://www.iso.org/obp/ui/#iso:std:iso:21348", "https://en.wikipedia.org/wiki/Infrared" ] }, "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "infrared radiation" }, { "pred" : "hasExactSynonym", "val" : "infra-red stellar radiation" }, { "pred" : "hasNarrowSynonym", "val" : "infrared solar radiation" }, { "pred" : "hasRelatedSynonym", "val" : "IR stellar radiation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001215", "lbl" : "visible spectrum stellar radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stellar radiation process during which electromagnetic waves or their quanta are emitted from a star at wavelengths between 380 nm and 760 nm.", "xrefs" : [ "https://www.iso.org/obp/ui/#iso:std:iso:21348" ] }, "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "optical stellar radiation" }, { "pred" : "hasNarrowSynonym", "val" : "visible spectrum solar radiation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001216", "lbl" : "ultraviolet stellar radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stellar radiation process during which electromagnetic waves or their quanta are emitted from a star at wavelengths between 10 nm and 400 nm.", "xrefs" : [ "https://www.iso.org/obp/ui/#iso:std:iso:21348", "https://en.wikipedia.org/wiki/Ultraviolet" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "ultraviolet solar radiation" } ], "xrefs" : [ { "val" : "NCIT:C17231" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "To be expanded to account for subtypes." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001217", "lbl" : "X-ray stellar radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stellar radiation process during which penetrating electromagnetic radiation is emitted by high-energy electrons as they fall into a lower state of energy.", "xrefs" : [ "https://en.wikipedia.org/wiki/X-ray" ] }, "comments" : [ "Ambiguity exists in the definition of x-rays and their differentiation from gamma rays. Photons with sufficient energy to be classified as x-rays may be emitted by other processes than electrons falling to lower energy states. Most x-rays have wavelengths ranging from 0.01 to 10 nanometers, corresponding to frequencies in the range of 30 petahertz to 30 exahertz and energies in the range of 100 eV to 100 keV." ], "subsets" : [ "\"environmental_hazards\"", "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "x ray stellar radiation" }, { "pred" : "hasNarrowSynonym", "val" : "X-ray solar radiation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001218", "lbl" : "gamma-ray stellar radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stellar radiation process during which penetrating electromagnetic radiation is emitted from the radioactive decay (gamma decay) of atomic nuclei.", "xrefs" : [ "https://en.wikipedia.org/wiki/Gamma_ray" ] }, "comments" : [ "Ambiguity exists in the definition of gamma rays. As a rule of thumb, gamma rays have energies above 100 keV, frequencies above 10 exahertz, and wavelengths less than 10 picometers. However, regardless of the energy released, electromagnetic radiation from radioactive decay of atomic nuclei is referred to as \"gamma rays\". In astronomy, however, gamma rays are defined by their energy, and no production process needs to be specified." ], "subsets" : [ "\"environmental_hazards\"", "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "gamma-ray solar radiation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001219", "lbl" : "ionizing stellar radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stellar radiation process during which electromagnetic waves or their quanta are emitted from a star with sufficient energy to disrupt molecular bonds or alter the electron number of atoms.", "xrefs" : [ "https://en.wikipedia.org/wiki/Electromagnetic_radiation", "https://en.wikipedia.org/wiki/Solar_irradiance" ] }, "subsets" : [ "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ionising stellar radiation" }, { "pred" : "hasNarrowSynonym", "val" : "ionising solar radiation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001220", "lbl" : "water accumulation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which liquid water accumulates in a site, most often in some form of container." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001221", "lbl" : "office building", "type" : "CLASS", "meta" : { "definition" : { "val" : "A commercial building which contains parts used as workplaces primarily for administrative and managerial workers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Office#Office_buildings" ] }, "comments" : [ "\"An office building will be divided into sections for different companies or may be dedicated to one company. In either case, each company will typically have a reception area, one or several meeting rooms, singular or open-plan offices, as well as toilets.\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001222", "lbl" : "commercial building", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building which is primarily used to facilitate the buying or selling of goods or services.", "xrefs" : [ "https://en.wikipedia.org/wiki/Commercial_building" ] }, "comments" : [ "\"Commerce includes legal, economic, political, social, cultural and technological systems that are in operation in any country or internationally.\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001223", "lbl" : "lumber production process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which wood is processed into beams or planks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lumber" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lumber production" }, { "pred" : "hasExactSynonym", "val" : "timber production" }, { "pred" : "hasExactSynonym", "val" : "timber production process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001224", "lbl" : "office", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building part within which administrative work is done by an organisations users in order to support and realise the objectives of that organization.", "xrefs" : [ "https://en.wikipedia.org/wiki/Office#Office_buildings" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001225", "lbl" : "IUCN protected area with sustainable use of natural resources", "type" : "CLASS", "meta" : { "definition" : { "val" : "An IUCN protected area within which 1) natural ecosystems and their resources are either conserved or used through non-industrial human activities, 2) usage activites contribute to conservation goals, ensuring inter-generational security for local communities' livelihoods, and 3) the majority of benefits derived from the use of ecosystems are received by communities living near or in the area.", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-ib-wilderness-area" ] }, "comments" : [ "Note that this ENVO class is not authoritative: see the associated IUCN references for a complete definition of all Protected Areas. Note, that the IUCN recommends that a proportion of the area is retained in a natural condition (e.g. a no-take management zone). As this is a recommendation rather than a rule, this ENVO class does not include IUCN categories with strict conservation regimes as necessary parts. An emphasis is placed on the integration of cultural approaches, belief systems and world-views possessed by human populations in and around the protected area into the conservation approaches used. Further, these areas host activities which facilitate scientific research, environmental monitoring, recreation, and \"appropriate\" small-scale tourism." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "protected area with sustainable use of natural resources", "xrefs" : [ "https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-ib-wilderness-area" ] } ], "xrefs" : [ { "val" : "IUCN-PACS:VI" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001226", "lbl" : "terrestrial natural environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A natural environment which is located on a land mass." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001227", "lbl" : "aquatic natural environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A natural environment which is within a water body." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001228", "lbl" : "Hill sphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A site in which the attraction of satellites by gravitation is dominated by an astronomical body, bounded by a zero-velocity surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hill_sphere" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Roche sphere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001229", "lbl" : "Lagrangian point", "type" : "CLASS", "meta" : { "definition" : { "val" : "A site in which the combined gravitational pull of the two large astronomical bodies is such that a smaller body, affected only by gravity, can maintain a stable position relative to those two large bodies and orbit with them due to centripetal force.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lagrangian_point" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "L-points" }, { "pred" : "hasExactSynonym", "val" : "Lagrange points" }, { "pred" : "hasExactSynonym", "val" : "libration points" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001230", "lbl" : "tropical marginal sea biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marginal sea biome which is located in a region with a tropical climate." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A class which is complementary to the WWF Temperate Shelf and Seas ecoregions grouping" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001231", "lbl" : "kerogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organic material which is in a solid phase and contained in sedimentary rock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerogen" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001232", "lbl" : "sapropelic kerogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Kerogen which cotains alginite, amorphous organic matter, cyanobacteria, freshwater algae, and land plant resins, thus having a hydrogen to carbon ratio above 1.25, and oxygen to carbon ratio below 0.15, readily produces liquid hydrocarbons, has reduced concentrations of aromatic structures, and primarily derived from proteins and lipids.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerogen" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001233", "lbl" : "labile kerogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Kerogen from which heavy hydrocarbons (such as oils) are derived following chemical break down.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerogen" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001234", "lbl" : "recalcitrant kerogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Kerogen from which light hydrocarbons (such as hydrocarbon gases) are derived following chemical break down.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerogen" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001235", "lbl" : "planktonic kerogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Kerogen which is enriched in sulfur compounds, has a hydrogen to carbon ratio under 1.25, an oxygen to carbon ratio between 0.03 and 0.18, derives into mixtures of hydrocarbon gas and oil, and derives from marine organic materials (primarily lipids) which are formed in reducing environments.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerogen" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001236", "lbl" : "sulfrous kerogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Planktonic kerogen which has high concentrations of sulfur compounds.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerogen" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001237", "lbl" : "humic kerogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Kerogen which derives from land plants, resembles wood or coral in structure, has a hydrogen to carbon ratio under 1, an oxygen to carbon ratio between 0.03 to 0.3, and which primarily produces coal or hydrocarbon gas on degradation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerogen" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001238", "lbl" : "residual kerogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Kerogen which has a hydrogen to carbon ratio less than 0.5 and primarily composed of polycyclic aromatic hydrocarbons.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerogen" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001239", "lbl" : "forest canopy", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "EcoLexicon:canopy" }, { "val" : "LTER:82" }, { "val" : "SWEETRealm:Canopy" }, { "val" : "https://en.wikipedia.org/wiki/Canopy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001240", "lbl" : "woodland canopy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A canopy which is part of a woodland ecosystem." }, "xrefs" : [ { "val" : "EcoLexicon:canopy" }, { "val" : "LTER:82" }, { "val" : "SWEETRealm:Canopy" }, { "val" : "https://en.wikipedia.org/wiki/Canopy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001241", "lbl" : "crop canopy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A canopy which is composed of the aboveground portion, or crowns, of a community of crop plants." }, "xrefs" : [ { "val" : "EcoLexicon:canopy" }, { "val" : "LTER:82" }, { "val" : "SWEETRealm:Canopy" }, { "val" : "https://en.wikipedia.org/wiki/Canopy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001242", "lbl" : "canopy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vegetation layer which is formed by a collection of individual plant crowns, themselves constituting part of the aboveground portion of a plant community.", "xrefs" : [ "https://en.wikipedia.org/wiki/Canopy_%28biology%29" ] }, "comments" : [ "false" ], "xrefs" : [ { "val" : "EcoLexicon:canopy" }, { "val" : "LTER:82" }, { "val" : "SWEETRealm:Canopy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001243", "lbl" : "forest ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover.", "xrefs" : [ "http://www.fao.org/docrep/017/ap862e/ap862e00.pdf" ] }, "comments" : [ "The definitions of forest can vary greatly, and different classes will be needed to support the major categories. Tree cover alone is not enough to distinguish between forests and plantations. The international definition proposed by the 2010 FAO Forestry Resource Assessment: \"land spanning more than 0.5 ha with trees higher than 5 metres and canopy cover of more than 10 percent, or trees able to reach these thresholds in situ . It does not include land that is predominantly under agricultural or urban land use.\" - FAO. 2010. Global forest resources assessment 2010, Main report, FAO Forestry Paper 163. Rome." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The correct usage of FLOPO terms in the axiomatisation needs to be confirmed." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001244", "lbl" : "cropland ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement.", "xrefs" : [ "http://dx.doi.org/10.1890/070062" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001245", "lbl" : "woodland ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities are spaced sufficiently far apart to allow sunlight to illuminate the understory.", "xrefs" : [ "https://en.wikipedia.org/wiki/Woodland" ] }, "comments" : [ "Woodland understories are often populated with communities of shrubs and herbaceous plants including grasses. There are varying distinctions between woodland and forest, with a large degree of ambiguity." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The correct usage of FLOPO terms in the axiomatisation needs to be confirmed." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001246", "lbl" : "agricultural process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which humans rear animals or plants on land for harvest and consumption." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "agriculture" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Expand the sites of occurrence listed as axioms as new terms emerge." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001247", "lbl" : "agronomic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An agricultural process during which humans rear plants on land for harvest and consumption." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "agronomy" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Expand the sites of occurrence listed as axioms as new terms emerge." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001248", "lbl" : "animal husbandry", "type" : "CLASS", "meta" : { "definition" : { "val" : "An agricultural process during which humans rear animals on land for harvest and consumption." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "agriculture" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Expand the sites of occurrence listed as axioms as new terms emerge." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001249", "lbl" : "crustacean farming process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaculture process during which humans rear crustaceans." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "crustacean aquaculture" }, { "pred" : "hasRelatedSynonym", "val" : "aquaculture of crustaceans" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001250", "lbl" : "finfish farming process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaculture process during which humans rear finfish." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "finfish aquaculture" }, { "pred" : "hasRelatedSynonym", "val" : "aquaculture of finfish" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001251", "lbl" : "mollusc farming process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaculture process during which humans rear molluscs." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mollusc aquaculture" }, { "pred" : "hasRelatedSynonym", "val" : "aquaculture of molluscs" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001252", "lbl" : "seaweed farming process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaculture process during which humans rear seaweed." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "seaweed aquaculture" }, { "pred" : "hasRelatedSynonym", "val" : "aquaculture of seaweed" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001253", "lbl" : "freshwater macrophyte farming process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaculture process during which humans rear freshwater macrophytes." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "freshwater macrophyte aquaculture" }, { "pred" : "hasRelatedSynonym", "val" : "aquaculture of freshwater macrophytes" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001254", "lbl" : "animal aquaculture process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaculture process during which humans rear animals." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "animal aquaculture" }, { "pred" : "hasRelatedSynonym", "val" : "aquaculture of animals" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001255", "lbl" : "plant aquaculture process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaculture process during which humans rear plants." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "plant aquaculture" }, { "pred" : "hasRelatedSynonym", "val" : "aquaculture of plants" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is unlikely to be limited to Viridiplantae, better axiomatisation should be sought in revisions." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001256", "lbl" : "coastal shrimp pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shrimp pond which is embedded in a coastal water body.", "xrefs" : [ "http://www.fao.org/3/contents/76b2641d-29e4-51b0-b9e5-6ca46beb0d9f/AC210E02.htm", "http://www.fao.org/docrep/003/x6941e/x6941e04.htm#bm04", "https://en.wikipedia.org/wiki/Shrimp_farming" ] }, "comments" : [ "\"Shrimp\" is a common language term that may refer to multiple crustacean species, typically in the groups Caridea or Dendrobranchiatamarine. These may be marine or freshwater organisms." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001257", "lbl" : "saline shrimp pond water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Saline water which is derived from sea water and used during the cultivation of crustaceans." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001258", "lbl" : "vog", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fog which is composed of liquid aerosols and gases derived from volcanic gas emissions (primarily sulfur oxides), formed when sulfur-bearing gases react with sunlight, oxygen, and moisture in an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vog" ] }, "comments" : [ "\"Vog and smog are different. Vog is formed when sulfur oxides emitted by a volcano react with moisture to form an aerosol. The aerosol scatters light, thus making the vog visible. Smog is formed largely from the incomplete combustion of fuel, reacting with nitrogen oxides and ozone produced from carbon monoxide by reactions with sunlight. The result is also a visible aerosol.\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001259", "lbl" : "transport of waste to a designated storage site", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which materials deemed to be waste are removed from a site and transported to another site designated for its storage.", "xrefs" : [ "https://eupathdb.org/eupathdb/" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001260", "lbl" : "waste disposal process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which materials deemed to be waste are transported away from a site.", "xrefs" : [ "https://eupathdb.org/eupathdb/" ] }, "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Abfallentsorgungsprozess" }, { "pred" : "hasExactSynonym", "val" : "proceso de eliminación de residuos" }, { "pred" : "hasExactSynonym", "val" : "processo di smaltimento rifiuti" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001261", "lbl" : "transport of child feces to a designated site", "type" : "CLASS", "meta" : { "definition" : { "val" : "A waste disposal process during which the feces of human children is transported to a designated storage site.", "xrefs" : [ "https://eupathdb.org/eupathdb/" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "child feces disposal" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001262", "lbl" : "transport of household waste to a designated storage site", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which materials used in a household and deemed to be waste are removed from the housing unit and transported to another site designated for its storage.", "xrefs" : [ "https://eupathdb.org/eupathdb/" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "household waste disposal" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001263", "lbl" : "area designated for human defecation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A site which has been designated as a place where humans may defecate." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "defecation area" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001264", "lbl" : "area designated for waste storage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A site which has been designated for the storage of waste material.", "xrefs" : [ "https://eupathdb.org/eupathdb/" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "waste disposal site" }, { "pred" : "hasRelatedSynonym", "val" : "waste storage site" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001265", "lbl" : "thermal pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental pollution process during which the temperature of an environmental system, or parts thereof, is raised above its natural levels.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermal_pollution" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001266", "lbl" : "thermal pollution of an aquatic system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thermal pollution process which occurs in a water body or aquatic environment.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermal_pollution" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001267", "lbl" : "stormwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which accumulates on a solid surface during precipitation events and snow/ice melt.", "xrefs" : [ "https://en.wikipedia.org/wiki/Stormwater" ] }, "comments" : [ "\"Stormwater can soak into the soil (infiltrate), be held on the surface and evaporate, or runoff and end up in nearby streams, rivers, or other water bodies (surface water).\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "storm water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001268", "lbl" : "urban stormwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "Stormwater which accumulates in an urban ecosystem.", "xrefs" : [ "https://en.wikipedia.org/wiki/Stormwater" ] }, "comments" : [ "\"Stormwater can soak into the soil (infiltrate), be held on the surface and evaporate, or runoff and end up in nearby streams, rivers, or other water bodies (surface water).\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "urban storm water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001269", "lbl" : "area of developed space", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of a planet's surface which is primarily covered by constructed or manufactured objects and materials, possibly interspersed with cultivated or anthropically maintained vegetation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Exosphere", "https://en.wikipedia.org/wiki/Planetary_surface", "https://www.mrlc.gov/nlcd11_leg.php" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001270", "lbl" : "rural stormwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "Stormwater which accumulates in a rural ecosystem.", "xrefs" : [ "https://en.wikipedia.org/wiki/Stormwater" ] }, "comments" : [ "\"Stormwater can soak into the soil (infiltrate), be held on the surface and evaporate, or runoff and end up in nearby streams, rivers, or other water bodies (surface water).\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "rural storm water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001271", "lbl" : "impermeable surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer through which liquids or gases cannot pass.", "xrefs" : [ "https://en.wikipedia.org/wiki/Impervious_surface" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001272", "lbl" : "constructed pavement", "type" : "CLASS", "meta" : { "definition" : { "val" : "A construction which comprises a durable surface layer overlying a solid surface intended to sustain vehicular or foot traffic.", "xrefs" : [ "https://en.wikipedia.org/wiki/Road_surface" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001273", "lbl" : "liquid layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which is primarily composed of some liquid material." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001274", "lbl" : "material isosurface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer throughout which one or more qualities (e.g. pressure, temperature, velocity, density) maintain an approximately constant value.", "xrefs" : [ "https://en.wikipedia.org/wiki/Isosurface" ] }, "comments" : [ "Isosurfaces are not equivalent to a \"surface layer\" in the sense of overlapping an external boundary. Further, this class is concerned only with material isosurfaces, not with mathematical abstractions." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001275", "lbl" : "solid layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001276", "lbl" : "water ice layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid layer which is primarily composed of some water-based ice." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001277", "lbl" : "asphalt road", "type" : "CLASS", "meta" : { "definition" : { "val" : "A road which is primarily composed of asphalt." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001278", "lbl" : "concrete road", "type" : "CLASS", "meta" : { "definition" : { "val" : "A road which is primarily composed of concrete." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001279", "lbl" : "sidewalk", "type" : "CLASS", "meta" : { "definition" : { "val" : "A constructed pavement which is built on the side of a road and intended for foot traffic.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sidewalk" ] }, "comments" : [ "\"In some places, the same term may also be used for a paved path, trail or footpath that is not next to a road, for example, a path through a park.\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "pavement" }, { "pred" : "hasRelatedSynonym", "val" : "footpath" }, { "pred" : "hasRelatedSynonym", "val" : "footway" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001280", "lbl" : "driveway", "type" : "CLASS", "meta" : { "definition" : { "val" : "A road which is used for local access to one or more structures, and is privately owned and maintained by an individual or group.", "xrefs" : [ "https://en.wikipedia.org/wiki/Driveway" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001281", "lbl" : "paved parking lot", "type" : "CLASS", "meta" : { "definition" : { "val" : "A constructed pavement which is used for parking vehicles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Parking_lot" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "car lot" }, { "pred" : "hasRelatedSynonym", "val" : "car park" }, { "pred" : "hasRelatedSynonym", "val" : "parking lot" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001282", "lbl" : "silica dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dust which is composed primarily of slicon dioxide." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001283", "lbl" : "aluminium dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dust which is primarily composed of aluminium particles." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001284", "lbl" : "barium dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dust which is primarily composed of barium particles." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001285", "lbl" : "talc dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dust which is primarily composed of hydrated magnesium silicate (talc) particles." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001286", "lbl" : "slate dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dust which is primarily composed of slate particles." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001287", "lbl" : "industrial fire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fire which occurs in an industrial area or building." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001288", "lbl" : "kaolin dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dust which is primarily composed of kaolinite particles." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "kaolinite dust" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001289", "lbl" : "brush fire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A land fire which consumes low-growing plants such as scrub and brush." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001290", "lbl" : "bush fire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A land fire which occurs in a large uncleared or sparsely settled area (as in Australia) usually scrub-covered or forested." }, "comments" : [ "\"Bush\" is a rather loosely defined regional term, primarily used in Australia." ], "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001291", "lbl" : "pasture fire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fire which occurs in a pastureland." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001292", "lbl" : "land fire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fire which occurs on land, typically consuming a terrestrial ecosystem as fuel." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001293", "lbl" : "bush area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vegetated area which has not been cleared or is sparsely settled, usually scrub-covered or forested", "xrefs" : [ "https://www.merriam-webster.com/dictionary/bush#h1" ] }, "comments" : [ "\"Bush\" is a rather loosely defined regional term, primarily used in Australia." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "the bush" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001294", "lbl" : "convective storm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric storm which is generated by the heating and convection of moist and unstable air masses.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Convective_storm", "http://www.emdat.be/Glossary" ] }, "comments" : [ "\"Convective storms range from localised thunderstorms (with heavy rain and/or hail, lightning, high winds, tornadoes) to meso-scale, multi-day events.\"" ], "subsets" : [ "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001295", "lbl" : "extra-tropical cyclone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A warm-core cyclone which occurs in the middle and high latitudes, primarily drawing energy from horizontal temperature contrasts between atmospheric fronts.", "xrefs" : [ "http://www.emdat.be/Glossary" ] }, "comments" : [ "\"When associated with cold fronts, extratropical cyclones may be particularly damaging (e.g. European winter/windstorm, Nor’easter).\"" ], "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mid-latitude cyclone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001296", "lbl" : "tropical storm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A an atmospheric storm which originates over tropical or subtropical waters and possesses a warm-core, non-frontal synoptic-scale cyclone with a low pressure centre, spiral rain bands and strong winds.", "xrefs" : [ "http://www.emdat.be/Glossary" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001297", "lbl" : "cyclone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric storm during which a large mass of atmospheric gas rotates around a centre of low atmospheric pressure, generating high winds which spiral towards that centre.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cyclone" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoAtmo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001298", "lbl" : "warm core cyclone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cyclone which rotates around an area low atmospheric pressure with increased temperature.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cyclone" ] }, "comments" : [ "The threshold of what is \"warm\" is variable, and thus data-level thresholding should be applied when using this class." ], "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "warm-core cyclone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001299", "lbl" : "atmospheric zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone which is part of an atmosphere." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "atmospheric area" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001300", "lbl" : "area of low atmospheric pressure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gaseous part of an atmosphere in which gases have reduced atmospheric pressure." }, "comments" : [ "Air is not specified directly (although the definition subsumes air masses) to allow for other forms of low pressure areas in planetary atmospheres." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001301", "lbl" : "aquatic estuarine layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of liquid that is part of an estuary.", "xrefs" : [ "ORCID:0000-0002-4366-3088" ] }, "subsets" : [ "\"envoMarine\"", "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001302", "lbl" : "estuarine coastal surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of estuarine water which extends a few centimeters from the surface of the water column towards the estuary bed and from the shore to a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:595" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/595.html" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001303", "lbl" : "environmental role", "type" : "CLASS", "meta" : { "definition" : { "val" : "A role which is may be realised by an environmental system" }, "comments" : [ "Experimental class." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001304", "lbl" : "oasis", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oasis is a vegetated area located in a desert, supplied with water from a water source which it surrounds, and surrounded by arid soil, sand, or rock." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cienaga" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Oasis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001305", "lbl" : "vegetated area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vegetated area is a geographic feature which has ground cover dominated by plant communities." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "ORCID:0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001306", "lbl" : "bone element environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which is determined by a bone element." }, "subsets" : [ "\"envoMeo\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001307", "lbl" : "partially_surrounded_by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x partially_surrounded_by y if and only if (1) x is adjacent to y and for the region r that is adjacent to x, r partially overlaps y (2) the shared boundary between x and y occupies a non-trivial proportion of the outermost boundary of x" }, "comments" : [ "Definition modified from 'surrounded by'." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A duck swimming in a pond is partially surrounded by air and partially surrounded by water." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001308", "lbl" : "hydroform", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid astronomical body part which is primarily composed of a continuous volume of liquid water and is held in shape or sustained by an environmental process." }, "comments" : [ "Similar, in spirit, to landform." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Should create links to envrionmental process with new relation like \"sustained_by\"" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001309", "lbl" : "liquid air-water interface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid surface layer which is in contact with air." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001310", "lbl" : "liquid surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer which is composed primarily of some liquid." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001311", "lbl" : "solid surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer which is composed primarily of solid environmental material." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001312", "lbl" : "estuarine coastal upper water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of estuarine water which extends from the surface of the water column to the pycnocline or mid-depth and from the shore to a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:596" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/596.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001313", "lbl" : "estuarine coastal pycnocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pycnocline which is part of an estuarine water body, spanning from the shore to a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:597" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/597.html" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001314", "lbl" : "estuarine coastal lower water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of estuarine water which extends from an estuarine pycnocline or mid-depth to the estuarine bed and from the shore to a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:598" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/598.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001315", "lbl" : "estuarine open water surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of estuarine water which extends a few centimeters from the surface of the water column towards the estuary bed and from a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters until the end of the estuary most distal from the coast." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:599" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/599.html" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001316", "lbl" : "estuarine open water upper water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of estuarine water which extends from the surface of the water column to the pycnocline or mid-depth and from a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters until the end of the estuary most distal from the coast." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:600" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/600.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001317", "lbl" : "estuarine tidal riverine coastal surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of fresh estuarine water which extends a few centimeters from the surface of the water column towards the estuary bed and from the land-water interface to a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:603" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/603.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "What causes this freshwater layer to be \"tidal\" is not clearly specified in the current CMECS definition." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001318", "lbl" : "estuarine tidal riverine coastal upper water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of fresh estuarine water which extends from the surface of the water column to the pycnocline or mid-depth and from the land-water interface to a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:604" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/604.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement. What causes this freshwater layer to be \"tidal\" is not clearly specified in the current CMECS definition." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001319", "lbl" : "saline water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A body of water which is primarily composed of saline water." }, "comments" : [ "This class has its subclasses populated by inference." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "saline body of water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001320", "lbl" : "fresh water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A body of water which is primarily composed of freshwater, with low solute content." }, "comments" : [ "This class has its subclasses primarily populated by inference. The threshold for what constitutes \"fresh\" water is variable and should typically be deferred to an applicatoin layer resource." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fresh body of water" }, { "pred" : "hasExactSynonym", "val" : "freshwater body" } ], "xrefs" : [ { "val" : "LTER:216" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001321", "lbl" : "brackish water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A body of water which is primarily composed of brackish water." }, "comments" : [ "This class has its subclasses populated by inference." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brackish body of water" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001322", "lbl" : "estuarine open water lower water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of estuarine water which extends from an estuarine pycnocline or mid-depth to the estuary bed and from a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters to end of the estuary most distal from the coast." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:602" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/602.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001323", "lbl" : "estuarine open water pycnocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pycnocline which is part of an estuarine water body, spanning from a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters until the end of the estuary most distal from the coast." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:601" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/601.html" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001324", "lbl" : "estuarine tidal riverine coastal pycnocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "An estuarine coastal pycnocline which is composed primarily of fresh tidal water." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:605" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/605.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "What causes this freshwater layer to be \"tidal\" is not clearly specified in the current CMECS definition. Further, the original definition and label do not clearly state whether this is a pycnocline in its own right, or just the tidal freshwater part of the pycnocline. In this ENVO class, we follow the semantics suggested by the label and treat this as a type of estuarine coastal pycnocline." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001325", "lbl" : "estuarine tidal riverine coastal lower water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of fresh estuarine water which extends from an estuarine pycnocline or mid-depth to the estuarine bed and from the land-water interface to a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:606" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/606.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement. What causes this freshwater layer to be \"tidal\" is not clearly specified in the current CMECS definition." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001326", "lbl" : "estuarine tidal riverine open water surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of fresh, tidal estuarine water which extends a few centimeters from the surface of the water column towards the estuary bed and from a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters until the end of the estuary most distal from the coast." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:607" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/607.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "What causes this freshwater layer to be \"tidal\" is not clearly specified in the current CMECS definition." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001327", "lbl" : "estuarine tidal riverine open water upper water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of fresh, tidal estuarine water which extends from the surface of the water column to the pycnocline or mid-depth and from a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters until the end of the estuary most distal from the coast." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:608" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/608.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement. What causes this freshwater layer to be \"tidal\" is not clearly specified in the current CMECS definition." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001328", "lbl" : "estuarine tidal riverine open water pycnocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "An estuarine open water pycnocline which is composed primarily of fresh tidal water." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:609" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/609.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "What causes this freshwater layer to be \"tidal\" is not clearly specified in the current CMECS definition. Further, the original definition and label do not clearly state whether this is a pycnocline in its own right, or just the tidal freshwater part of the pycnocline. In this ENVO class, we follow the semantics suggested by the label and treat this as a type of estuarine open water pycnocline." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001329", "lbl" : "estuarine tidal riverine open water lower water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of fresh estuarine water which extends from an estuarine pycnocline or mid-depth to the estuary bed and from a fiat boundary where the estuary bed below the water column reaches a depth of 4 meters to end of the estuary most distal from the coast." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:610" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/610.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement. What causes this freshwater layer to be \"tidal\" is not clearly specified in the current CMECS definition." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001330", "lbl" : "nitrogen cycling", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biogeochemical cycle which has nitrogen-bearing chemical entities as participants." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "nitrogen cycle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001331", "lbl" : "sulfur cycling", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biogeochemical cycle which has sulfur-bearing chemical entities as participants." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sulphur cycling" }, { "pred" : "hasRelatedSynonym", "val" : "sulfur cycle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001332", "lbl" : "phosphorous cycling", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biogeochemical cycle which has phosphorous-bearing chemical entities as participants." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "phosphorous cycle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001333", "lbl" : "marine tidal flow process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tidal flow process which occurs in an ocean or sea and during which tidal movements generate advective flows, often amplified in velocity when moving through an inlet, pass or channel." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "tidal flow" } ], "xrefs" : [ { "val" : "CMECS:643" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/643.html" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001334", "lbl" : "advective transport process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.", "xrefs" : [ "https://en.wikipedia.org/wiki/Advection", "https://en.wikipedia.org/wiki/Intensive_and_extensive_properties" ] }, "comments" : [ "Advective processes are disjoint from diffusive processes. Typically, fluids are advected." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "advective transport" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001335", "lbl" : "anchor ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which is attached to a bed underneath a body of water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Anchor_ice" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bottom-fast ice" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001336", "lbl" : "marine tidal flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine current which is maintained by a tidal flow process." }, "comments" : [ "This class aligns to an ambiguously defined unit of the Coastal and Marine Ecological Classification Standard (CMECS), \"Tidal Flow\" (https://cmecscatalog.org/cmecs/classification/unit/643.html). In CMECS, this is treated as a hydroform, but is defined as a process (while some of its subclasses are not). In ENVO, we have aligned the CMECS unit according to its definition as a process (ENVO:01001333); however, we maintain this class to allow reference to the hydroform maintained by that process." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "marine tidal current" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001337", "lbl" : "riverine anchor ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anchor ice which is attached to a riverbed.", "xrefs" : [ "https://en.wikipedia.org/wiki/Anchor_ice" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "riverine bottom-fast ice" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001338", "lbl" : "diurnal marine tidal flow zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine zone in which ocean waters undergo a diurnal (once per day) tidal oscillation - with one high and one low tide per day - due to the supression of a second daily oscillation by the geometry of the ocean basin and obstructions presented by land masses." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. In this case, the definition aligns with ENVO's \"environmental zone\" semantics. Alternate classes have been created to accommodate the process of diurnal tidal flow. The as the frequency of the process does not influence the semantics of the resulting hydroform, please use ENVO_01001336 to reference the hydroform rather than the zone or the process. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "diurnal tidal flow" } ], "xrefs" : [ { "val" : "CMECS:664" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/664.html" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001339", "lbl" : "diurnal marine tidal flow process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tidal flow process which occurs once per day in ocean waters where a second daily oscillation is blocked by land masses or ocean basin geometry." }, "comments" : [ "This class broadly aligns to the Coastal and Marine Ecological Classification Standard (CMECS). This class is provided as the processual equivalent of CMECS unit 664 \"Diurnal Tidal Flow\" (https://cmecscatalog.org/cmecs/classification/unit/664.html); however, based on its definition, CMECS:664 is more accurately mapped to ENVO:01001338 as the definition aligns with ENVO's \"environmental zone\" semantics. A class has been created to accommodate the semantics of the resulting hydroform (ENVO:01001336). Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "diurnal tidal flow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001340", "lbl" : "semi-diurnal marine tidal flow zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine tidal flow zone in which ocean waters undergo a semi-diurnal (twice per day) tidal oscillation - with two high and two low tides per day of roughly equal amplitude." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. In this case, the definition aligns with ENVO's \"environmental zone\" semantics. Alternate classes have been created to accommodate the process of diurnal tidal flow. The as the frequency of the process does not influence the semantics of the resulting hydroform, please use ENVO:01001336 to reference the hydroform rather than the zone or the process. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "semi-diurnal tidal flow" } ], "xrefs" : [ { "val" : "CMECS:666" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/666.html" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001341", "lbl" : "marine tidal flow zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone in which varying gravitational forces from astronomical bodies, combined with the rotation of the astronomical body containing the zone, cause marine waters to undergo periodic depth oscillations (tides).", "xrefs" : [ "https://en.wikipedia.org/wiki/Tide" ] }, "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001342", "lbl" : "tidal flow process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water flow process during which movements of water masses caused by varying gravitational and rotational forces from astronomical bodies, combined with the rotation of the astronomical body containing the water mass, cause waters to undergo periodic depth oscillations (tides)." }, "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "tidal flow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001343", "lbl" : "semi-diurnal marine tidal flow process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine tidal flow process which occurs twice per day, resulting in two high and two low tides per day, both of roughly equal amplitude." }, "comments" : [ "This class broadly aligns to the Coastal and Marine Ecological Classification Standard (CMECS). This class is provided as the processual equivalent of CMECS unit 666 \"Semi-diurnal Tidal Flow\" (https://cmecscatalog.org/cmecs/classification/unit/666.html); however, based on its definition, CMECS:666 is more accurately mapped to ENVO:01001340 as the definition aligns with ENVO's \"environmental zone\" semantics. A class has been created to accommodate the semantics of the resulting hydroform (ENVO:01001336). Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "semi-diurnal tidal flow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001344", "lbl" : "freshwater seep riverine anchor ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anchor ice which is attached to a riverbed where a river flows into a marine water body and which is formed by the freezing of freshwater seeping out of the riverbed's sediments.", "xrefs" : [ "https://en.wikipedia.org/wiki/Anchor_ice" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fresh water seep riverine anchor ice" }, { "pred" : "hasExactSynonym", "val" : "fresh water seep riverine bottom-fast ice" }, { "pred" : "hasExactSynonym", "val" : "freshwater seep riverine bottom-fast ice" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001345", "lbl" : "floating ice mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which is suspended in a water body, being sufficiently buoyant for part of the mass to breach the surface of that water body." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001346", "lbl" : "erosion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.", "xrefs" : [ "https://en.wikipedia.org/wiki/Erosion" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001347", "lbl" : "glacial equlibrium line", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone on a glacier which is roughly linear and where the rates of ice ablation and accumulation are approximately equal.", "xrefs" : [ "https://github.com/Vocamp/Virtual-Hackahon-on-Glacier-topic/issues/12", "https://www.americangeosciences.org/pubs/glossary" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "equilibrium limit" }, { "pred" : "hasRelatedSynonym", "val" : "equilibrium line" }, { "pred" : "hasRelatedSynonym", "val" : "firn limit" }, { "pred" : "hasRelatedSynonym", "val" : "firn line" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001348", "lbl" : "material accumulation zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone in which the deposition and accumulation of an environmental material occurs." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "accumulation zone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001349", "lbl" : "material decumulation zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone in which processes resulting in the removal of one or more environmental materials have higher rates than pocesses which result in their deposition and accumulation." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "decumulation zone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001350", "lbl" : "ice accumulation zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation zone in which the rates of ice formation processes exceed those of ice decumulation processes, leading to a net icrease in some mass of ice." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "accumulation area" }, { "pred" : "hasExactSynonym", "val" : "area of ice gain" }, { "pred" : "hasExactSynonym", "val" : "ice accumulation area" }, { "pred" : "hasExactSynonym", "val" : "ice gain zone" }, { "pred" : "hasExactSynonym", "val" : "zone of ice gain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001351", "lbl" : "ice decumulation zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material decumulation zone in which the rates of ice formation processes are below those of ice decumulation processes, leading to a net decrease in some mass of ice." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "area of ice loss" }, { "pred" : "hasExactSynonym", "val" : "ice decumulation area" }, { "pred" : "hasExactSynonym", "val" : "ice loss zone" }, { "pred" : "hasExactSynonym", "val" : "zone of ice loss" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001352", "lbl" : "glacial ice accumulation zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice accumulation zone which overlaps part of a glacier.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "This zone usually occurs at higher elevations and generally overlaps the conversion of snow to glacial ice." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "accumulation area" }, { "pred" : "hasExactSynonym", "val" : "area of glacial ice gain" }, { "pred" : "hasExactSynonym", "val" : "glacial ice accumulation area" }, { "pred" : "hasExactSynonym", "val" : "glacial ice gain zone" }, { "pred" : "hasExactSynonym", "val" : "zone of glacial ice gain" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/AccumulationZone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://github.com/Vocamp/Virtual-Hackahon-on-Glacier-topic" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001353", "lbl" : "environmental zone of processual equilibrium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone in which the rates of two or more processes are roughly equal to one another." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001354", "lbl" : "volcanic crater glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier which is contained in the site bounded by a volcanic crater." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "crater glacier" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001355", "lbl" : "crater zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The site which is located in a crater." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001356", "lbl" : "volcanic crater zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "The site which is located in a volcanic crater." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001357", "lbl" : "desert", "type" : "CLASS", "meta" : { "definition" : { "val" : "A landform which has been rendered barren or partially barren by environmental extremes, especially by low rainfall, and which loses more liquid water by evapotranspiration than is supplied by precipitation." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001358", "lbl" : "hydroclimate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A climate which is realised through hydrological processes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Climate", "https://en.wiktionary.org/wiki/hydroclimate" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001359", "lbl" : "atmospheric aerosolised particle formation event", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aerosol formation event which occurs in an atmosphere.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/602" ] }, "comments" : [ "Note that the detection of such events, and thus the thresholds used to define them in the field, are operational and dependent on the technology and observation strategy used. The event must be intense enough, occur in a large enough area, and persist for enough time to allow the formed particle population to be observed. There are no exact or universally agreed upon thresholds for the intensity, area and duration of such events. If elevated new particle formation rate is observed in the atmosphere (away from direct sources of the related gas-phase molecules) for an operationally defined period of time, practitioners often declare that such an event has taken place." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "rapid formation of liquid or solid particles from gaseous material in an atmosphere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001360", "lbl" : "Paramo", "type" : "CLASS", "meta" : { "definition" : { "val" : "An alpine tundra ecosystem which exists above the continuous timberline but below the permanent snowline on elevated land in tropical regions.", "xrefs" : [ "https://en.wikipedia.org/wiki/P%C3%A1ramo" ] }, "comments" : [ "Paramo ecosystems are known to be evolutionary hotspots and large daily fluctuations in temperature and humidity, often resulting in dialy freez-thaw cycles." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001361", "lbl" : "atmospheric wind direction", "type" : "CLASS", "meta" : { "definition" : { "val" : "A direction which inheres in an atmospheric wind, typically expressed as the inverse of the direction the wind is moving in.", "xrefs" : [ "http://en.wikipedia.org/wiki/Wind_direction" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001362", "lbl" : "atmospheric wind speed", "type" : "CLASS", "meta" : { "definition" : { "val" : "The speed of an atmospheric wind.", "xrefs" : [ "http://en.wikipedia.org/wiki/Wind_speed" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "flow velocity of wind" }, { "pred" : "hasBroadSynonym", "val" : "speed of wind" }, { "pred" : "hasBroadSynonym", "val" : "wind flow velocity" }, { "pred" : "hasBroadSynonym", "val" : "wind speed" }, { "pred" : "hasExactSynonym", "val" : "speed of atmospheric wind" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001363", "lbl" : "volume of hydrological precipitation", "type" : "CLASS", "meta" : { "definition" : { "val" : "The volume of water which has fallen during a precipitation process.", "xrefs" : [ "http://de.wikipedia.org/wiki/Niederschlag#Niederschlagsmenge" ] }, "comments" : [ "While the precipitated material may be water in any of its forms, the volume that this class refers to is that of liquid water." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Niederschlagsmenge" }, { "pred" : "hasExactSynonym", "val" : "precipitation amount" }, { "pred" : "hasRelatedSynonym", "val" : "precipitation" }, { "pred" : "hasRelatedSynonym", "val" : "precipitation level" }, { "pred" : "hasRelatedSynonym", "val" : "precipitation quantity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001364", "lbl" : "climate system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A system which consists of an atmosphere, hydrosphere, cryosphere, land surface, and biosphere, forced or influenced by external processes.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/604", "https://www.ipcc.ch/ipccreports/tar/wg1/040.htm" ] }, "comments" : [ "This class, from the IPCC report, is naturally focused on the Earth's climate. The report cites the Sun as the agent of the most important forcing processes. It also considers the direct effect of human activities on the climate system an external forcing" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001365", "lbl" : "atmospheric secondary aerosol formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which gas-phase molecules form solid or liquid particles that are stable enough to continue growing in size - via the condensation or aggregation of other gas-phase molecules - at a greater rate than their constituents re-enter gas phase.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particulates" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "atmospheric formation of an aerosol" }, { "pred" : "hasExactSynonym", "val" : "formation of an aerosol in an atmosphere" }, { "pred" : "hasExactSynonym", "val" : "formation of an aerosol in the atmosphere" }, { "pred" : "hasExactSynonym", "val" : "formation of particles from gaseous material in an atmosphere" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "formation of liquid or solid particles from gaseous material in an atmosphere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001366", "lbl" : "aerosolised particle formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which particles suspended in a gaseous medium are formed.", "xrefs" : [ "https://en.wikipedia.org/wiki/Aerosol", "https://en.wikipedia.org/wiki/Particulates" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "new particle formation process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001367", "lbl" : "primary aerosol formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which solid or liquid particles are directly introduced into a volume of gas.", "xrefs" : [ "https://en.wikipedia.org/wiki/Aerosol", "https://en.wikipedia.org/wiki/Particulates" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "primary aerosol formation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001368", "lbl" : "secondary aerosol formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aerosol formation process during which solid or liquid particles are either 1) formed in a volume of gas through gas-to-liquid or gas-to-solid conversions or 2) increase in size through aggregation with other particles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Aerosol", "https://en.wikipedia.org/wiki/Particulates" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "secondary aerosol formation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001369", "lbl" : "tidal mangrove shrubland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shrubland biome which is densely vegetated by dwarf or short mangroves (and associates) that are generally less than 6 meters in height, is tidally influenced, is located in tropical or subtropical areas." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions. CMECS provides the following notes: \"Commonly found on intertidal mud flats along the shores of estuaries. Tidal mangrove shrublands may include immature stands or stunted mature trees that indicate a harsh growing environment. Areas characterized by tall mangroves (> 6 meters) are placed in the Tidal Mangrove Forest Biotic Group. Where tidal amplitude is relatively low, the vegetation forms narrow bands along the coastal plains, and it rarely penetrates inland more than several kilometers along rivers. Where tidal amplitude is greater, mangroves extend further inland along river courses, forming extensive stands in the major river deltas. Also, mangrove cays may occur within the lagoon complex of barrier reefs. The list of biotic communities for this group is long: a few examples are provided below, and the complete list is available in Appendix F\"" ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:577" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/577.html" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001370", "lbl" : "tundra ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which 1) typically has monthly average temperatures below 10 degrees Celsius 2) has a low evapotranspiration ratio 3) is dominated by treeless terrain, covered by communities of low-growing vegetation such as dwarf shrubs, sedges and grasses, mosses, and lichens, 4) contains areas of soil underlain by permafrost with a thin active layer and 5) occurs in both polar and alpine regions (i.e., both high latitudes and high altitudes), and 5) does not have permanent snow or ice cover.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Tundra ecosysems are often underlaid by permafrost, with the result that drainage is bad and the soil may be saturated for long periods. It does not have a permanent snow-ice cover. Productivity is low in this biome because of the extremes of climate." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "SPIRE:Tundra" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001371", "lbl" : "alpine tundra ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tundra ecosystem which exists at high altitudes and where vegetation is stunted due to low temperatures and high winds.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alpine_tundra" ] }, "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "SPIRE:Tundra" }, { "val" : "http://sweetontology.net/realmCryo/AlpineTundra" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001372", "lbl" : "aerosolised particle formation event", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aerosol formation process during which the rate of particle formation exceeds that which is normally present in the site of its occurrence." }, "comments" : [ "This is similar to the semantics of storms, where increased rates are observed due to external forcings." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001373", "lbl" : "secondary atmospheric aerosol formation event", "type" : "CLASS", "meta" : { "definition" : { "val" : "A secondary aerosol formation process which occurs in an atmosphere at an increased rate relative to background processes of the same kind.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/602" ] }, "comments" : [ "Note that the detection of such events, and thus the thresholds used to define them in the field, are operational and dependent on the technology and observation strategy used. The event must be intense enough, occur in a large enough area, and persist for enough time to allow the formed particle population to be observed. There are no exact or universally agreed upon thresholds for the intensity, area and duration of such events. If elevated new particle formation rate is observed in the atmosphere (away from direct sources of the related gas-phase molecules) for an operationally defined period of time, practitioners often declare that such an event has taken place." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "rapid formation of liquid or solid particles from gaseous material in an atmosphere" }, { "pred" : "hasRelatedSynonym", "val" : "atmospheric new particle formation event" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001374", "lbl" : "sea state", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality which inheres in a marine water body by virtue of the height, wavelength, period, and directional energy flux of its waves which evolve into swell through nonlinear dynamics." }, "subsets" : [ "\"envoEOVs\"", "\"envoMarine\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ocean state" } ], "xrefs" : [ { "val" : "http://www.goosocean.org/components/com_oe/oe.php?task=download&id=34494&version=1.0&lang=1&format=1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001375", "lbl" : "sea ice variability", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability quality which inheres in sea ice, particularly in its concentration, area and extent, type, motion, deformation, age, thickness, and volume." }, "comments" : [ "The EOV specification sheet is simply titled as \"sea ice\", but the description of the EOV is of the variability of sea ice." ], "subsets" : [ "\"envoEOVs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "http://www.goosocean.org/index.php?option=com_oe&task=viewDocumentRecord&docID=17464" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001376", "lbl" : "marine faunal bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine bed which is covered by animals which have benthic habitats, including attached, clinging, sessile, infaunal, burrowing, laying, interstitial, and slow-moving animals, but not animals that have created substrate." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions. An excerpt of the CMECS description: \"Faunal Beds are highly dependent on substrate type. Individual species and entire biotic communities have adapted specialized anatomies and behaviors for survival on hard substrates; other species and communities have specialized and developed adaptations for life on soft substrates. Generalist fauna also occur (e.g., certain holothurians, crustaceans, and sponges) that can succeed on both substrate types. However, substrate type is such a defining aspect of the Faunal Bed class that CMECS Faunal Bed subclasses are assigned as physical-biological associations involving both biota and substrate.\"" ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "faunal bed" } ], "xrefs" : [ { "val" : "CMECS:391" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/391.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "\"Mid-depth\", present in many CMECS classes, is ambiguous and needs refinement." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001377", "lbl" : "sea surface height", "type" : "CLASS", "meta" : { "definition" : { "val" : "A elevation quality which inheres in a marine water body by virtue of the position of that water body's surface layer (adjacent to an atmosphere) relative to some reference elevation." }, "subsets" : [ "\"envoEOVs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "http://www.goosocean.org/index.php?option=com_oe&task=viewDocumentRecord&docID=17465" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001378", "lbl" : "marine bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A submerged bed which underlies a marine water body." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "sea bottom" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001379", "lbl" : "mussel bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine faunal bed which is dominated by mussels of the Mytilus or Modiolus genera either 1) resting on the sediment surface, 2) partially embedded in the sediment, 3) attached to conspecifics (by using their byssal threads), or 4) attached to a piece of gravel in slightly gravelly fine sediments." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions. An excerpt of the CMECS description: \"Faunal Beds are highly dependent on substrate type. Individual species and entire biotic communities have adapted specialized anatomies and behaviors for survival on hard substrates; other species and communities have specialized and developed adaptations for life on soft substrates. Generalist fauna also occur (e.g., certain holothurians, crustaceans, and sponges) that can succeed on both substrate types. However, substrate type is such a defining aspect of the Faunal Bed class that CMECS Faunal Bed subclasses are assigned as physical-biological associations involving both biota and substrate.\"" ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:532" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/532.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "If individual mussels are present in densities sufficient to construct biogenic substrate, please use the mussel reef class." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001380", "lbl" : "neritic mussel reef", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine reef which is located on a shelf (i.e. in the neritic zone) and primarily composed of self-adhered or conglomerated mussel shells." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:338" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/338.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The CMECs classification references shelf reefs in the definition. Thus this term is focused only on mussel reefs that are neritic." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001381", "lbl" : "oceanic mussel reef", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine reef which is present in the depths beyond (offshore relative to) the continental shelf and primarily composed of self-adhered or conglomerated mussel shells." }, "comments" : [ "This class is an extension of the Coastal and Marine Ecological Classification Standard (CMECS). It provides an oceanic analogue to the neritic mussel reef class (CMECS:338). Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "oceanic mussel reef substrate" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001382", "lbl" : "area of attached mussel assemblages", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area which is dominated by dense accumulations of mussels attached to a substrate other than conspecifics, including the associated faunal communities and predators present on the mussels (e.g., starfish)." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions. From the CMECs definition: \"Areas where mussels have constructed substrate are classified as Mussel Reef. Areas where mussels are not attached to a hard substrate are classified as Soft Sediment Fauna, Mussel Bed.\"" ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:532" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/515.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "attached mussels (biotic group)" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001383", "lbl" : "area of attached Modiolus assemblages", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area which is dominated by dense accumulations of mussels, of the genus Modiolus, attached to a substrate other than conspecifics, including the associated faunal communities and predators present on the mussels (e.g., starfish)." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions. From the CMECs definition: \"Areas where mussels have constructed substrate are classified as Mussel Reef. Areas where mussels are not attached to a hard substrate are classified as Soft Sediment Fauna, Mussel Bed.\"" ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:532" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/883.html" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001384", "lbl" : "area of attached faunal communities", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone within which ecological communities of animals are attached to some substrate." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001385", "lbl" : "Bathymodiolus-dominated oceanic mussel reef", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oceanic mussel reef which is primarily settled by mussels of the genus Bathymodiolus and primarily composed of self-adhered or conglomerated mussel shells" }, "comments" : [ "This class is an extension of the Coastal and Marine Ecological Classification Standard (CMECS). It provides an oceanic analogue to the neritic mussel reef class (CMECS:338), with a focus on Bathymodiolus communities. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "Bathymodiolus-dominated oceanic mussel reef substrate" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001386", "lbl" : "mussel reef", "type" : "CLASS", "meta" : { "definition" : { "val" : "A marine reef which is primarily composed of self-adhered or conglomerated mussel shells." }, "comments" : [ "This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "CMECS:338" }, { "val" : "https://cmecscatalog.org/cmecs/classification/unit/338.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The CMECs classification references shelf reefs in the definition. Thus this term is focused only on mussel reefs that are neritic." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "mussel reef substrate" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001387", "lbl" : "obsolete Bathymodiolus-dominated oceanic mussel bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oceanic mussel reef which is primarily settled by mussels of the genus Bathymodiolus and primarily composed of self-adhered or conglomerated mussel shells" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:01001390" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001388", "lbl" : "oceanic mussel bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mussel bed which is located in benthic regions beyond (offshore to) a continental shelf." }, "comments" : [ "This class extends the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "https://cmecscatalog.org/cmecs/classification/unit/532.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "If individual mussels are present in densities sufficient to construct biogenic substrate, please use the mussel reef class." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001389", "lbl" : "neritic mussel bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mussel bed which is located in benthic regions that are part of a continental shelf." }, "comments" : [ "This class extends the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "xrefs" : [ { "val" : "https://cmecscatalog.org/cmecs/classification/unit/532.html" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "If individual mussels are present in densities sufficient to construct biogenic substrate, please use the mussel reef class." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001390", "lbl" : "Bathymodiolus-dominated oceanic mussel bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oceanic mussel bed which has mussel communities dominated by members of the genus Bathymodiolus." }, "comments" : [ "This class extends the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions." ], "subsets" : [ "\"envoCmecs\"", "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "If individual mussels are present in densities sufficient to construct biogenic substrate, please use the mussel reef class." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001391", "lbl" : "gill tissue material", "type" : "CLASS", "meta" : { "comments" : [ "An organic environmental material which is primarily composed of gill tissue." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001392", "lbl" : "mussel gill tissue material", "type" : "CLASS", "meta" : { "comments" : [ "Gill tissue material which is part of salt-water mussel in the family Mytilidae" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001393", "lbl" : "Bathymodiolus gill tissue material", "type" : "CLASS", "meta" : { "comments" : [ "Mussel gill tissue material which is part of a member of the genus Bathymodiolus." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001394", "lbl" : "accumulation of matter on aerosolised particles", "type" : "CLASS", "meta" : { "comments" : [ "A material accumulation process during which the solid or liquid parts of an aerosol increase in mass due to mechanical aggregation of existing particles or through chemical conversion of gas-phase material." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001395", "lbl" : "necromass", "type" : "CLASS", "meta" : { "definition" : { "val" : "Biomass which is composed primarily of dead organisms, their parts, or their organic derivatives." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dead biological matter" }, { "pred" : "hasExactSynonym", "val" : "dead biomass" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001396", "lbl" : "abyssal clay", "type" : "CLASS", "meta" : { "definition" : { "val" : "Clay which is part of an abyssal plain." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001397", "lbl" : "ultisol", "type" : "CLASS", "meta" : { "definition" : { "val" : "A soil which has high mineral content and which contain no calcareous material, have less than 10% weatherable minerals its surface layer, and have less than 35% base saturation throughout its volume.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ultisol" ] }, "comments" : [ "The word \"ultisol\" is derived from \"ultimate\", because ultisols were seen as the ultimate product of continuous weathering of minerals in a humid, temperate climate without new soil formation via glaciation." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "red clay soil" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001398", "lbl" : "aerosolisation of dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "A primary aerosol formation process during which dust particles are suspended in a gaseous medium." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001399", "lbl" : "atmospheric aerosolisation of dust", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which dust is aerosolised in an atmosphere." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dust event" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001400", "lbl" : "homomutatus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aeroform which is formed as a result of strong upper winds spreading a cirrus homogenitus cloud in the atmosphere and, in turn, causing internal tranformations which result in the cloud taking on the appearnce of natural cirri-form clouds.", "xrefs" : [ "https://cloudatlas.wmo.int/homomutatus.html" ] }, "comments" : [ "Once these clouds resemble natural cirri-form clouds (Cirrus, Cirrocumulus, Cirrostratus), they are classified as such." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001401", "lbl" : "haze formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental process during which a haze is formed by the aerosolisation of solid particles, including natural materials and anthropogenic pollutants, in an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Haze" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001402", "lbl" : "haze", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aersolised mass of dust, smoke, or other dry particulates which scatters visible light thus obsscuring visibility through an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Haze" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001403", "lbl" : "haze formation event", "type" : "CLASS", "meta" : { "definition" : { "val" : "A haze formation process which has an increased rate relative to that which is usually present in a given site.", "xrefs" : [ "https://en.wikipedia.org/wiki/Haze" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001404", "lbl" : "ecological province", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which is of larger scale than an ecoregion and which includes smaller ecosystems determined by the presence of ecological assemblages that have at least some cohesion over evolutionary time frames." }, "comments" : [ "Assemblages within provinces will show endemism, principally at the level of species. While this may be partly explained by historical isolation, abiotic environmental features and coniditions will play a strong role. These may include geomorphological features (isolated island and shelf systems, semi-enclosed seas); hydrographic features (currents, upwellings, ice dynamics); or geochemical influences (broadest-scale elements of nutrient supply and salinity).” Examples include Cold Temperate Northeast Pacific, Tropical Northwestern Atlantic, and Cold Temperate Northeast Pacific." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001405", "lbl" : "laboratory environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environment which is bounded by the building envelope of a laboratory and in which a system of manufactured products exert control on one or more of its environmental conditions." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001406", "lbl" : "laboratory facility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A research facility in which systems of manufactured products control internal conditions and in which scientific or technological research, experiments, and measurement may be performed.", "xrefs" : [ "https://en.wikipedia.org/wiki/Laboratory" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "research laboratory" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001407", "lbl" : "cirrocumulus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) has been shaped into structural elements resembling grains or ripples, 2) is almost exclusively composed of ice crystals, 3) is located in the high level of the atmosphere (high étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-cirrocumulus.html", "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "When present in aggregates, individual cirrocumulus clouds are merged or separate, and regularly arranged in a thin patch, sheet or layer. Most of the small structural elements have an apparent width of less than one degree. Strongly supercooled water droplets may occur but are usually rapidly replaced by ice crystals. When well-illuminated by sunlight (excluding during sunrise and sunset) cirrocumulus clouds appear white. Absence of any precipitation." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Cirrocumulus-Wolke" }, { "pred" : "hasExactSynonym", "val" : "Hohe Schäfchenwolke" }, { "pred" : "hasExactSynonym", "val" : "Zirrokumulus" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add more PATO qualities once they have been added to PATO." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "Cc" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001408", "lbl" : "cirrostratus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) occurs in the form of a smooth or fibrous veil, 2) is composed of few small ice crystals, 3) is located in the high level of the atmosphere (high étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-cirrostratus.html", "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "Cirrostratus clouds totally or partly cover the sky and are always thin enough to show the disc of the local star. When well-illuminated by sunlight (excluding during sunrise and sunset) cirrostratus clouds appear transparent or whitish. Cirrostratus clouds generally produce halo phenomena; sometimes the veil of cirrostratus is so thin that a halo provides the only indication of its presence. Absence of any precipitation." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Cirrostratus" }, { "pred" : "hasExactSynonym", "val" : "Hohe Schleierwolke" }, { "pred" : "hasExactSynonym", "val" : "Zirrostratus" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add more PATO qualities once they have been added to PATO." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "Cs" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001409", "lbl" : "altocumulus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) has been shaped into laminae, rounded masses or rolls, 2) is exclusively composed of water droplets, 3) is located in the middle level of the atmosphere (middle étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-altocumulus.html", "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "Altocumulus clouds are sometimes fibrous or diffuse and may or may not be merged. When present in aggregates, individual altocumulus clouds are organised in patches, sheets or layers. Most of the regularly arranged small elements in this cloud type often have an apparent width of between one and five degrees. When well-illuminated by sunlight (excluding during sunrise and sunset) altocumulus clouds appear white, grey, or both white and grey, often with shading. The composition of altocumulus clouds leads to low transparency and sharp outlines of the elements. Absence of any precipitation." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Altocumulus-Wolke" }, { "pred" : "hasExactSynonym", "val" : "Grobe Schäfchenwolke" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This definition is very odd, it seems to allow for such a wide range of variation that the boundaries of this class become suspect.\n\nAdd more PATO qualities once they have been added to PATO." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "Ac" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001410", "lbl" : "altostratus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) occurs in the form of a striated, fibrous, or uniform sheet or layer, 2) is composed of water droplets and ice crystals, 3) is located in the middle level of the atmosphere (middle étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-altostratus.html", "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "Striation occurs in the form of grooves or channels in cloud formations, arranged parallel to the flow of the air. When well-illuminated by sunlight (excluding during sunrise and sunset) altostratus clouds appear greyish or bluish. Altostratus clouds do not show halo phenomena when scattering visible range stellar radiation. Altostratus clouds have parts thin enough to reveal the local star at least vaguely, as through ground glass or frosted glass. Altostratus may produce rain, snow or ice pellets. Altostratus is usually found in the middle level, but it often extends higher. Altostratus is generally a layer of great horizontal extent (several tens or hundreds of kilometres) and fairly considerable vertical extent (several hundreds or thousands of metres). In the most complete case, three superposed parts can be distinguished: (a) An upper part, composed wholly or mainly of ice crystals, (b) A middle part, composed of a mixture of ice crystals, snow crystals or snowflakes and supercooled water droplets, (c) A lower part, composed wholly or mainly of ordinary or supercooled water droplets or drops. Sometimes the cloud may consist of only two parts, either: 1) An upper part like (a) above and a lower part like (c) or, 2) An upper part like (b) and a lower part like (c). Less frequently, the entire cloud may also be like (a) or like (b) alone." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Altostratus-Wolke" }, { "pred" : "hasExactSynonym", "val" : "Mittelhohe Schichtwolke" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add more PATO qualities once they have been added to PATO." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "As" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001411", "lbl" : "nimbostratus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) occurs in the form of a layer, 2) is composed of water droplets (sometimes supercooled) and raindrops, or snow crystals and snowflakes, or of a mixture of these liquid and solid particles, 3) is located in the middle level of the atmosphere (middle étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "Low, ragged clouds frequently occur below the nimbostratus layer, with which they may or may not merge. When well-illuminated by sunlight (excluding during sunrise and sunset) nimbostratus clouds appear grey, often dark grey in colour. Nimbostratus clouds usually have no discernible base. Nimbostratus generally covers a wide area and is of great vertical extent. Nimbostratus is diffused by more or less continuously falling rain or snow or ice pellets, which in most cases reaches the ground. Sometimes nimbostratus clouds have the appearance of being illuminated from the inside. Nimbostratus is almost always found in the middle level, but it usually extends into the other two levels. Nimbostratus is thick enough throughout to blot out the local star." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Nimbostratus-Wolke" }, { "pred" : "hasExactSynonym", "val" : "Regen-schichtwolke" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "Ns" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001412", "lbl" : "stratocumulus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) has been shaped into non-fibrous tessellations, rounded masses, or rolls, 2) is primarily composed of water droplets, and may contain raindrops or, more rarely, snow pellets, snow crystals and snowflakes, 3) is located in the low level of the atmosphere (low étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-stratocumulus.html", "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "When present in aggregates, individual stratocumulus clouds are organised in patches, sheets or layers. Most of the regularly arranged small elements in this cloud type often have an apparent width of more than five degrees. When well-illuminated by sunlight (excluding during sunrise and sunset) stratocumulus clouds appear grey or whitish, or both grey and whitish in colour. The cloud almost always has dark parts. Fibrous structural elements may emerge when virga is formed. Stratocumulus can have weak falls of rain, snow or snow pellets. Stratocumulus may also be shaped into structural elements which are similar to but do not exactly resemble the ones noted in the definition." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Haufenschichtwolke" }, { "pred" : "hasExactSynonym", "val" : "Stratocumulus-Wolke" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add more PATO qualities once they have been added to PATO." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "Sc" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001413", "lbl" : "stratus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) occurs in the form of a layer with a fairly uniform base or, less frequently, ragged patches, 2) is composed of small water droplets, 3) is located in the low level of the atmosphere (low étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-stratus.html", "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "When well-illuminated by sunlight (excluding during sunrise and sunset) stratus appears grey in colour. Stratus clouds only produce halo phenomena at very low temperatures. Stratus can have weak falls of drizzle, snow or snow grains. Stratus may allow a clearly visible outline of the local star to be seen through its mass." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Stratus-Wolke" }, { "pred" : "hasExactSynonym", "val" : "niedere Schichtwolke" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "St" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001414", "lbl" : "cumulus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) has been shaped into rising mounds, domes, or towers with a bulging upper part resembling a cauliflower and a near horizontal or ragged base, 2) is mainly composed of water droplets, 3) is located in the low level of the atmosphere (low étage).", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-cumulus.html", "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "When well-illuminated by sunlight (excluding during sunrise and sunset) cumulus has has brilliant white sunlit parts and a dark grey base. Cumulus clouds have sharp outlines. When of great vertical extent, cumulus may release precipitation in the form of showers of rain, snow or snow pellets. Cumulus clouds usually have their bases in the low atmospheric level (low étage), but their vertical extent is often so great that their tops may reach into the middle and high atmospheric levels (middle and high étage)." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Cumuluswolke" }, { "pred" : "hasExactSynonym", "val" : "Haufenwolke" }, { "pred" : "hasExactSynonym", "val" : "Kumuluswolke" }, { "pred" : "hasExactSynonym", "val" : "Quellwolke" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add more PATO qualities once they have been added to PATO. Note that the domed quality refers to the cauliflower shape (which is itself a variant of domed). This should be replaced with cauliflower shaped once in ENVO." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "Cu" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001415", "lbl" : "homogenitus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which is formed by condensation events triggered by some anthropogenic processes or the outputs thereof, such as aircraft contrails or emissions from chimneys.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://cloudatlas.wmo.int/homogenitus.html", "https://en.wikipedia.org/wiki/Cloud" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001416", "lbl" : "benthic deep-sea mining", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mining process during which materials are extracted from benthic environments deep below the ocean surface, where no stellar radiation reaches..", "xrefs" : [ "https://en.wikipedia.org/wiki/Mining", "https://www.eionet.europa.eu/gemet/en/concept/14956" ] }, "comments" : [ "\"The most valuable of the marine mineral resources is petroleum. About 15% of the world's oil is produced offshore, and extraction capabilities are advancing. One of the largest environmental impacts of deep sea mining are discharged sediment plumes which disperse with ocean currents and thus may negatively influence the marine ecosystem. Coal deposits known as extensions of land deposits , are mined under the sea floor in Japan and England.\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "deep seafloor mining" }, { "pred" : "hasExactSynonym", "val" : "deep-seafloor mining" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001417", "lbl" : "silvagenitus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which develop locally over forests as a result of increased humidity due to evaporation and evapotranspiration from the tree canopy.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://cloudatlas.wmo.int/silvagenitus.html", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "These special clouds will be given the name of the appropriate genus, followed by any appropriate species, variety and supplementary feature, and followed by the special cloud name “silvagenitus” (for example, Stratus silvagenitus)." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001418", "lbl" : "cirrus fibratus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cirrus cloud which occurs as a detached unit or a thin veil and consists of nearly straight or irregularly curved filaments that do not terminate in hooks or tufts.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/clouds-species-fibratus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "The species-level term, 'fibratus', applies mainly to clouds of the Cirrus and Cirrostratus genera" ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001419", "lbl" : "cumulonimbus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which 1) has been shaped into dense, mountain-like forms or one or more tower-like forms with a flattened upper portion, which often spreads out in the shape of an anvil or plume, 2) is composed of water droplets and, especially in its upper portion, ice crystals, 3) is located in the low level of the atmosphere (low étage), but can extend into the middle and high level of the atmosphere.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera-cumulonimbus.html", "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "Cumulonimbus clouds have a very dark base which may be merged with low ragged clouds which frequently form underneath this cloud. The upper portion may be smooth, fibrous, or striated. Cumulonimbus also contains large raindrops and, often, snowflakes, snow pellets or hailstones. The water droplets and raindrops may be substantially supercooled. Cumulonimbus is frequently associated with precipitation, sometimes in the form of virga. Cumulonimbus is often accompanied by lightning, thunder or hail. Cumulonimbus usually have their bases in the low level, but their vertical extent is often so great that their tops may reach into the middle and high levels." ], "subsets" : [ "\"envoAtmo\"", "\"envoCloudAtlas\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Cumulonibus-Wolke" }, { "pred" : "hasExactSynonym", "val" : "Gewitterwolke" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add more PATO qualities once they have been added to PATO." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "Cb" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001420", "lbl" : "sea bed mining", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mining process during which materials are extracted from the surface, or below the surface, of the ocean floor.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mining", "https://www.eionet.europa.eu/gemet/en/concept/7500" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001421", "lbl" : "cirrus uncinus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cirrus cloud which does not have grey parts and which is often shaped like a comma, terminating at its highest point in a hook, or in a tuft, the upper part of which is not in the form of a rounded protuberance.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/clouds-species-uncinus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001422", "lbl" : "cirrus spissatus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cirrus cloud which 1) is structurally organised in patches, 2) is sufficiently dense to appear greyish when viewed towards the local star and 3) may veil, the local star, obscure its outline, or even hide it entirely.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/clouds-species-spissatus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "Cirrus spissatus often originates from the upper part of a Cumulonimbus." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001423", "lbl" : "cirrostratus fibratus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cirrostratus cloud which occurs as a detached unit or a thin veil and consists of nearly straight or irregularly curved filaments that do not terminate in hooks or tufts.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/clouds-species-fibratus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "The species-level term, 'fibratus', applies mainly to clouds of the Cirrus and Cirrostratus genera" ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001424", "lbl" : "stratocumulus castellanus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stratocumulus cloud which 1) has linearly arranged cumuliform protuberances which resemble crenellated turrets or towers, some of which are taller than they are wide in some portion of their upper parts, 2) possess a lower region or base which connects these protuberances.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/clouds-species-castellanus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "The species-level term, 'castellanus', applies to Cirrus, Cirrocumulus, Altocumulus and Stratocumulus genera. The castellanus character is especially evident when the clouds are seen from the side." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001425", "lbl" : "cirrus castellanus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cirrus cloud which 1) has linearly arranged cumuliform protuberances which resemble crenellated turrets or towers, some of which are taller than they are wide in some portion of their upper parts, 2) possess a lower region or base which connects these protuberances.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/clouds-species-castellanus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "The species-level term, 'castellanus', applies to Cirrus, Cirrocumulus, Altocumulus and Stratocumulus genera. The castellanus character is especially evident when the clouds are seen from the side." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001426", "lbl" : "cirrocumulus castellanus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cirrocumulus cloud which 1) has linearly arranged cumuliform protuberances which resemble crenellated turrets or towers, some of which are taller than they are wide in some portion of their upper parts, 2) possess a lower region or base which connects these protuberances.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/clouds-species-castellanus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "The species-level term, 'castellanus', applies to Cirrus, Cirrocumulus, Altocumulus and Stratocumulus genera. The castellanus character is especially evident when the clouds are seen from the side." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001427", "lbl" : "altocumulus castellanus cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "An altocumulus cloud which 1) has linearly arranged cumuliform protuberances which resemble crenellated turrets or towers, some of which are taller than they are wide in some portion of their upper parts, 2) possess a lower region or base which connects these protuberances.", "xrefs" : [ "https://cloudatlas.wmo.int/clouds-genera.html", "https://cloudatlas.wmo.int/clouds-species-castellanus.html", "https://cloudatlas.wmo.int/docs/Excerpt%20from%20wmo_49-1_final_2017.pdf", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "The species-level term, 'castellanus', applies to Cirrus, Cirrocumulus, Altocumulus and Stratocumulus genera. The castellanus character is especially evident when the clouds are seen from the side." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001428", "lbl" : "water-based cloud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud which is primarily composed of water-based aerosols.", "xrefs" : [ "https://cloudatlas.wmo.int/introduction-and-principles-of-cloud-classification.html", "https://en.wikipedia.org/wiki/Cloud" ] }, "comments" : [ "On Earth clouds are formed by the saturation of air in the homosphere when air cools or gains water vapor. Note that this class describes clouds as countable objects, rather than 'cloud material'. It also refers only to clouds made up of a water-based material." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cloud mass" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001429", "lbl" : "land conversion process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropisation process during which terrestrial environments - natural or anthropised - or parts thereof are altered to facilitate human activities such as agriculture, settlement, or commerce.", "xrefs" : [ "https://en.wikipedia.org/wiki/Land_development" ] }, "comments" : [ "Further examples include subdividing real estate into lots, typically for the purpose of building homes and converting unused factories into condominia." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "land conversion" }, { "pred" : "hasExactSynonym", "val" : "land development" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001430", "lbl" : "agricultural land conversion process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A land conversion process during which terrestrial ecosystems are altered to facilitate agricultural activities such as crop cultivation or the rearing of livestock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Land_development" ] }, "comments" : [ "This process typically relies on the conversion and development of forests, savannas or grassland. Creation of farmland from wasteland, deserts or previous impervious surfaces is considerably less frequent because of the presence of degraded soil or the lack of fertile soil." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "agricultural land conversion" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001431", "lbl" : "land use process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environmental process which includes all human activities undertaken in a natural, semi-natural, or anthropised environment.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use" ] }, "comments" : [ "There are multiple systems of land use classification. This hierarchy aims to be generally applicable, but national systems can be added on request." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001432", "lbl" : "forestry", "type" : "CLASS", "meta" : { "definition" : { "val" : "A land use process during which humans access and manage forest ecosystems for 1) the provisioning of wood, forages, water, wildlife, and recreation as well as a broad range of other ecosystem services or 2) the maintenance of the forest ecosystem's health.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Forestry", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/3439" ] }, "comments" : [ "\"Modern forestry generally embraces a broad range of concerns, in what is known as multiple-use management, including the provision of timber, fuel wood, wildlife habitat, natural water quality management, recreation, landscape and community protection, employment, aesthetically appealing landscapes, biodiversity management, watershed management, erosion control, and preserving forests as 'sinks' for atmospheric carbon dioxide. A practitioner of forestry is known as a forester. Other common terms are: a verderer, or a silviculturalist. Silviculture is narrower than forestry, being concerned only with forest plants, but is often used synonymously with forestry.\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001433", "lbl" : "terrestrial mining", "type" : "CLASS", "meta" : { "definition" : { "val" : "A land use process during which materials of economic value are extracted from a planet, usually from an orebody, lode, vein, seam, reef or placer deposit.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://en.wikipedia.org/wiki/Mining", "https://www.eionet.europa.eu/gemet/en/concept/14837" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "mining" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001434", "lbl" : "anthropogenic ecosystem conversion process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which an ecosystem - natural or anthropised - is changed by the actions of humans." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001435", "lbl" : "planned deforestation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Deforestation which is planned and executed by humans.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/932" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001436", "lbl" : "planned environmental usage process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process during which humans access and obtain resources, benefits, or services from a natural or anthropised ecosystem." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001437", "lbl" : "mining", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which a non-renewable resource such as petroleum, natural gas, or water is extracted from an ecosystem.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://en.wikipedia.org/wiki/Mining", "https://www.eionet.europa.eu/gemet/en/concept/14837" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001438", "lbl" : "quarrying", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mining process during which rock or mineral deposits are extracted from the terrestrial surface layers of an astronomical body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mining", "https://www.eionet.europa.eu/gemet/en/concept/6870" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001439", "lbl" : "marine mining", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mining process which occurs in a marine ecosystem." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001440", "lbl" : "coal mining", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mining process during which coal is extracted from the rocky portion of an astronomical body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mining", "https://www.eionet.europa.eu/gemet/en/concept/1507" ] }, "comments" : [ "This may be either terrestrial or marine." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001441", "lbl" : "opencast mining", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mining process during which metal ores and minerals that lie near the terrestrial surface of an astronomical body are extracted by removing the overlying material and breaking and loading the ore.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mining", "https://www.eionet.europa.eu/gemet/en/concept/5874" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "openpit mining" }, { "pred" : "hasExactSynonym", "val" : "strip mining" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001442", "lbl" : "agriculture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A land use process during which terrestrial environments are modified such that they can grow crop plants or allow the rearing of animals to provide food, fiber, medicines, or other products used by humans.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Agriculture", "https://en.wikipedia.org/wiki/Land_use" ] }, "comments" : [ "\"Agriculture includes horticulture, fruit growing, seed growing, dairy farming, the breeding and keeping of livestock (including any creature kept for the production of food, wool, skins or fur), the use of land as grazing land, meadow land, osier land, market gardens and nursery grounds, and the use of woodlands where that use is ancillary to the farming of land for other agricultural purposes.\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001443", "lbl" : "usage of an environment for recreation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which humans access an environment in order to promote the refreshment of their physical and psychological health through relaxation and leisure activities.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/7001" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "leisure" }, { "pred" : "hasBroadSynonym", "val" : "recreation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001444", "lbl" : "usage of an environment for transportation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which an environment facilitates the movement of materials and material objects (persons or goods) from place to place, typically with the assistance of a vehicle.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/8641" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "transportation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001445", "lbl" : "usage of an environment for infrastructure and utilities", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which an environment supports 1) enterprises concerned with the provision to the public of essentials, such as electricity or water or 2) the basic network or foundation of capital facilities or community investments which are necessary to support economic and community activities.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/4321", "https://www.eionet.europa.eu/gemet/en/concept/6822" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "transportation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001446", "lbl" : "usage of an environment for residential activity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which an environment supports the settlement and dwelling of a community of humans.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/7143" ] }, "comments" : [ "This class does not include environments which are primarily used for commerce or industry." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "residential" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001447", "lbl" : "usage of an environment for community and social services", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which an environment supports welfare activities organised by the state or a local authority and carried out by trained personnel.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/7816" ] }, "comments" : [ "Services include those provided by health care facilities, places of religious worship, educational facilities, police stations, fire stations, coastguard facilities, public sanitation, non-human animal welfare services, detention services, and other public services." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001448", "lbl" : "usage of an environment for retail activity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which an environment supports the sale of goods to ultimate consumers, usually in small quantities.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/7193" ] }, "comments" : [ "This class includes activities carried out in shops, showrooms, cafes, travel agents, hairdressers, facilities providing financial and professional services, restaurants, public houses, and bars." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001449", "lbl" : "usage of an environment for defence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which an environment supports activities which aim to protect citizens or any geographical area by preparing for or by using military means to resist the attack of an enemy.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/2031" ] }, "comments" : [ "This class includes activities carried out in defence establishments, including camps, airfields, and live firing training areas. It excludes sites where defence personnel reside, such as barracks." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001450", "lbl" : "usage of an environment for industry", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which an environment supports manufacturing facilities producing commodities that are sold with the expectation of recovering the total cost of production.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/4279" ] }, "comments" : [ "This class includes environments used to support the facilities engaged with a broad variety of manufacturing activities from food and tobacco, to textiles, metals, vehicles, and chemicals." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001451", "lbl" : "usage of an environment for business", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which an environment supports facilities associated with commerce or the earning of a livelihood through means other than manufacturing or the provision of a public service.", "xrefs" : [ "https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf", "https://en.wikipedia.org/wiki/Land_use", "https://www.eionet.europa.eu/gemet/en/concept/1084" ] }, "comments" : [ "This class includes activities carried out in commercial offices, meeting centres, art studios, recording studios, film sets, warehouses, and distribution centres." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001452", "lbl" : "Calyptra habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A habitat which supports the persistence and growth of a population of Calyptra moths and which overlaps mesic meadows and edges and clearings in vegetated areas." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vampire moth habitat" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001453", "lbl" : "terrestrial mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mountain which is located on land and which is bounded by an atmosphere or outer space." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001454", "lbl" : "polar mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mountain that is part of a polar environment.", "xrefs" : [ "https://www.unep-wcmc.org/resources-and-data/mountain-watch--environmental-change-sustainable-development-in-mountains" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001455", "lbl" : "temperate mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mountain that is part of a temperate environment.", "xrefs" : [ "https://www.unep-wcmc.org/resources-and-data/mountain-watch--environmental-change-sustainable-development-in-mountains" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001456", "lbl" : "tropical mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mountain that is part of a tropical environment.", "xrefs" : [ "https://www.unep-wcmc.org/resources-and-data/mountain-watch--environmental-change-sustainable-development-in-mountains" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001457", "lbl" : "cloud forest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A montane forest ecosystem which 1) is evergreen, 2) present on mountains where there is frequent cloud and mist cover, 3) which has a large proportion of ferns and mosses in its plant communities, growing on all tree trunks and branches present in the ecosystem, and 3) harvests aerosolised water and adds it to the terrestrial water supply.", "xrefs" : [ "https://www.unep-wcmc.org/resources-and-data/mountain-watch--environmental-change-sustainable-development-in-mountains" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tropical montane cloud forest" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001458", "lbl" : "mist", "type" : "CLASS", "meta" : { "definition" : { "val" : "A visible mass of water droplets or ice crystals suspended in the air at or near a planetary surface, formed when humid air cools rapidly.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mist" ] }, "comments" : [ "This class refers only to mist formed by materials primarily composed of water. Mist is less dense than fog, and visibility is typically greater than one kilometre." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001459", "lbl" : "high-elevation mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mountain which has a maximum elevation greater than 2500 metres above sea level.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "http://www.wikialps.eu/doku.php?id=wiki:mountain_and_mountain_area", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "comments" : [ "On Earth, mountains in this category cross the atmospheric oxycline above which oxygen concentrations fall below the physiological tolerance threshold of most humans. Note that the threshold elevations are inconsistent between the various reports which list this classification: while some have overlapping thresholds, others are non-overlapping. The latter model is used in ENVO for coherence and to adhere to the Kapos et al. 2000 reference." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001460", "lbl" : "mid-elevation mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mountain which has a maximum elevation between 300 and 2499 metres above sea level and slopes greater than or equal to two degrees of inclination.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "http://www.wikialps.eu/doku.php?id=wiki:mountain_and_mountain_area", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "comments" : [ "On Earth, mountains in this category are below the atmospheric oxycline above which oxygen concentrations fall below the physiological tolerance threshold of most humans. Note that the threshold elevations are inconsistent between the various reports which list this classification: while some have overlapping thresholds, others are non-overlapping. The latter model is used in ENVO for coherence and to adhere to the Kapos et al. 2000 reference." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001461", "lbl" : "UNEP-WCMC class 1 mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A high-elevation mountain which has a maximum elevation greater than 4500 metres above sea level.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001462", "lbl" : "UNEP-WCMC class 2 mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A high-elevation mountain which has a maximum elevation between 3500 and 4500 metres above sea level.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001463", "lbl" : "UNEP-WCMC class 3 mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A high-elevation mountain which has a maximum elevation between 2500 and 3500 metres above sea level.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001464", "lbl" : "UNEP-WCMC class 4 mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mid-elevation mountain which has a maximum elevation between 1500 and 2499 metres above sea level and a slope greater than or equal to two degrees.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001465", "lbl" : "UNEP-WCMC class 5 mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mid-elevation mountain which has a maximum elevation between 1000 and 1499 metres above sea level and either 1) a slope greater than or equal to five degrees or 2) a local elevation range, within a 7 kilometre radius, of greater than 300 metres above sea level.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001466", "lbl" : "UNEP-WCMC class 6 mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mid-elevation mountain which has a maximum elevation between 300 and 999 metres above sea level and a local elevation range, within a 7 kilometre radius, of greater than 300 metres above sea level.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001467", "lbl" : "UNEP-WCMC class 7 mountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "An elevated inner basin or plateau surrounded by mountains, but not - itself - a mountain.", "xrefs" : [ "http://dx.doi.org/10.1079/9780851994468.0004", "https://wayback.archive-it.org/all/20080511044709/http://www.unep-wcmc.org/mountains/mountain_watch/pdfs/WholeReport.pdf", "https://www.cabi.org/cabebooks/ebook/20000614040" ] }, "comments" : [ "This is an odd class, as it's not a mountain in itself but is used to classify elevated basins and plateaus surrounded by mountains." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-7556-2097" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001468", "lbl" : "intertidal ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which overlaps those areas of the foreshore and seabed that are exposed to the air at low tide and submerged at high tide.", "xrefs" : [ "https://en.wikipedia.org/wiki/Intertidal_zone" ] }, "comments" : [ "These semantics link with those of environmental zones. Use this class to refer to the ecosystem rather than the area that it occupies." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "coastal zone" }, { "pred" : "hasRelatedSynonym", "val" : "IntertidalZone", "xrefs" : [ "NASA:earthrealm" ] }, { "pred" : "hasRelatedSynonym", "val" : "littoral zone" } ], "xrefs" : [ { "val" : "EcoLexicon:intertidal_zone" }, { "val" : "FTT:240" }, { "val" : "FTT:501" }, { "val" : "LTER:941" }, { "val" : "SPIRE:Intertidal" }, { "val" : "SWEETRealm:IntertidalZone" }, { "val" : "https://en.wikipedia.org/wiki/Intertidal_zone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001469", "lbl" : "observing system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A system of constructed and manufactured products which are used by humans to produce data, information, or knowledge about material, immaterial, or processual entities." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001470", "lbl" : "observatory system", "type" : "CLASS", "meta" : { "definition" : { "val" : "An observing system which generates long-term data about one or more entities of interest, typically using standardised methodology." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001471", "lbl" : "atmospheric observatory system", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001472", "lbl" : "marine observatory system", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001473", "lbl" : "terrestrial observatory system", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001474", "lbl" : "astronomical observatory system", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001475", "lbl" : "omics observatory system", "type" : "CLASS", "meta" : { "definition" : { "val" : "An observatory system which includes components used to generate (meta)genomic, (meta)transcriptomic, (meta)proteomic, metabolomic, and other omic data, information, and knowledge.", "xrefs" : [ "http://dx.doi.org/10.1186/2047-217X-3-2", "https://glomicon.org" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001476", "lbl" : "body of liquid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid astronomical body part which is continuous and is delimited by physical discontinuities or non-liquid boundaries." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001477", "lbl" : "liquid astronomical body part", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an astronomical body which is primarily composed of liquid material." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001478", "lbl" : "gaseous astronomical body part", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an astronomical body which is primarily composed of gaseous material." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001479", "lbl" : "fluid astronomical body part", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an astronomical body which is primarily composed of fluid.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fluid" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-10-04T13:59:22Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001480", "lbl" : "domestic building", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building which is primarily used for the long-term habitation of humans.", "xrefs" : [ "https://en.wikipedia.org/wiki/Commercial_building" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-10-04T14:04:49Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001481", "lbl" : "public prison", "type" : "CLASS", "meta" : { "definition" : { "val" : "A prison facility which is owned and operated by a state.", "xrefs" : [ "https://en.wikipedia.org/wiki/Prison" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "correctional facility" }, { "pred" : 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"http://purl.obolibrary.org/obo/ENVO_01001484", "lbl" : "fire whirl", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fire whirl is a whirlwind induced by the contraction and rotation of intense, rising heat and turbulent, eddying air masses resulting from a large fire and made up of a core of burning matter surrounded by a rotating pocket of air.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fire_whirl" ] }, "comments" : [ "Note that this not a sublcass of \"tornado\": this is a different phenomenon formed as a result of convection induced by fire." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fire devil" }, { "pred" : "hasExactSynonym", "val" : "fire swirl" }, { "pred" : "hasRelatedSynonym", "val" : "fire tornado" }, { "pred" : "hasRelatedSynonym", "val" : "fire twister" }, { "pred" : "hasRelatedSynonym", "val" : "firenado" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : 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centred on a small, smooth condensation funnel which often does not reach the planetary surface, and c) forms a distinctively laminar cloud of dust when it makes contact with the land.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tornado" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dust-tube tornado" }, { "pred" : "hasExactSynonym", "val" : "fair weather waterspout on land" }, { "pred" : "hasExactSynonym", "val" : "land spout" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-10-04T19:01:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001487", "lbl" : "waterspout", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tornado which connects a cumulus or cumulonimbus cloud to a body of water, often transporting water from that water body along the spiraling winds constituting its vortex.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tornado" ] }, "comments" : [ "Wikipedia notes that there is disagreement over whether to classify waterspouts as true tornadoes." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "water spout" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-10-04T19:01:17Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001488", "lbl" : "aircraft", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vehicle which is able to travel through air in an atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Aircraft" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : 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"http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-11-10T15:49:02Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001496", "lbl" : "inorganic macronutrient dissolved in ocean water", "type" : "CLASS", "meta" : { "definition" : { "val" : "A macronutrient role which inheres in nitrate, nitrogen dioxide, ammonium, silicon, or phosphate dissolved in ocean water." }, "subsets" : [ "\"envoEOVs\"", "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-11-10T15:57:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001497", "lbl" : "carbonate system of ocean water", "type" : "CLASS", "meta" : { "definition" : { "val" : "A system 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management" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-12-18T13:53:17Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001500", "lbl" : "anthropogenic light pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pollution process during which artificial light with wavelengths in the visible spectrum is released into the environment." }, "comments" : [ "This form of pollution is typically the result of urbanisation or similar land use change." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Lichtverschmutzung", "xrefs" : [ "INTERNAS:WS2", "http://www.awi.de/internas" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-09T09:05:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001501", "lbl" : "radiation from a manufactured product", "type" : "CLASS", "meta" : { "definition" : { "val" : "An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.", "xrefs" : [ "https://en.wikipedia.org/wiki/Electromagnetic_radiation", "https://en.wikipedia.org/wiki/Solar_irradiance" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoAstro\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "anthropogenic radiation" }, { "pred" : "hasExactSynonym", "val" : "artificial radiation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-09T09:07:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001502", "lbl" : "visible spectrum radiation from a manufactured product", "type" : "CLASS", "meta" : { "definition" : { "val" : "Radiation from a manufactured product during which light between the wavelenghts of 380 nm and 760 nm is emitted.", "xrefs" : [ "https://www.iso.org/obp/ui/#iso:std:iso:21348" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "optical radiation from a manufactured product" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-09T09:21:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001503", "lbl" : "glacial surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid surface layer which is that part of a glacier in contact with a planetary atmosphere, water body, or solid material partially surrounding that glacier." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glacier surface" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T15:39:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001504", "lbl" : "glacial surface layer velocity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A velocity quality which inheres in the surface layer of a glacier." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glacier surface layer velocity" }, { "pred" : "hasExactSynonym", "val" : "glacier surface velocity" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T15:42:21Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001505", "lbl" : "alpine tundra biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tundra biome which exists at high altitudes and where vegetation - dominated by a few species of dwarf shrubs, a few grasses, sedges, lichens, and mosses - is stunted due to low temperatures and high winds.", "xrefs" : [ "https://en.wikipedia.org/wiki/Alpine_tundra" ] }, "comments" : [ "The absence of trees in this biome is primarily due to high altitude rather than high latitude. On Earth, it lies roughly between the summer isotherm of 10 degrees Centigrade and the snow line. Primary productivity is low in this biome because of the extremes of climate." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mountain tundra", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] } ], "xrefs" : [ { "val" : "SPIRE:Tundra" }, { "val" : "http://sweetontology.net/realmCryo/AlpineTundra" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T16:26:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001506", "lbl" : "ice calf", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which has calved off an larger mass of ice.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "This definition is intentionally broad to include the multiple existing and used definitions of ice calfs." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "calved ice" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/Calf" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T16:45:23Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001507", "lbl" : "floating ice calf", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice calf which is suspended in a water mass, being partially exposed to an atmosphere.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/Calf" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T16:49:42Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001508", "lbl" : "anchored ice calf", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice calf which is frozen to the bed of an ocean or other water body.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T16:50:13Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001509", "lbl" : "terrestrial ice calf", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice calf which rests on land.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/Calf" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T16:51:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001510", "lbl" : "material congelation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transformation process during which a material's viscosity increase either through a reduction in temperature, through chemical reactions, or other physical effects.", "xrefs" : [ "https://en.wikipedia.org/wiki/Congelation" ] }, "comments" : [ "Sometimes the increase in viscosity is great enough to crystallize or solidify the substance in question." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "congelation" }, { "pred" : "hasExactSynonym", "val" : "congelation process" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T18:47:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001511", "lbl" : "freshwater ice", "type" : "CLASS", "meta" : { "comments" : [ "Water ice which is formed by the freezing of fresh water." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T18:55:42Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001512", "lbl" : "congelation sea ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sea ice which 1) has formed on the submerged surface (i.e. the base) of an existing mass of sea ice and 2) is composed of columnar crystals due to the downward growth of the crystals into the water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Congelation_ice", "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Congelation ice usually forms through the fusion/coalescence of platelets into solid ice." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "black ice" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T18:56:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001513", "lbl" : "permafrost congelation ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water ice which has formed in a mass of permafrost.", "xrefs" : [ "https://en.wikipedia.org/wiki/Congelation_ice", "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T19:11:56Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001514", "lbl" : "congelation ice in a fresh water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "Freshwater ice which forms downward from the surface of a freshwater water body and is transparent due to a reduced number of air bubbles trapped in its mass.", "xrefs" : [ "https://en.wikipedia.org/wiki/Congelation_ice" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "black ice" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T19:18:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001515", "lbl" : "freshwater congelation ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Freshwater ice which forms on a solid substrate through the freezing of freshwater.", "xrefs" : [ "https://en.wikipedia.org/wiki/Congelation_ice" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T19:25:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001516", "lbl" : "ice cave congelation ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Freshwater congelation ice which has formed on a solid substrate in an ice cave.", "xrefs" : [ "https://en.wikipedia.org/wiki/Congelation_ice", "https://www.researchgate.net/publication/257694900_A_process-based_classification_of_alpine_ice_caves" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T19:25:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T19:27:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001517", "lbl" : "drift ice mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A floating mass of ice which is 1) unattached to land or land-fast ice and 2) moved by the action of winds or currents.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Prior to approximately 2014, drift ice was synonymous with the various grades of pack ice, described as very open (with an ice concentration of 1/10 to 3/10), open (4/10 to 6/10, with many leads and polynyas and the floes generally not in contact with one another), close (7/10 to 8/10, composed of floes mostly in contact), very close (9/10 to less than 10/10), and compact (10/10, with no water visible, called consolidated pack ice if the floes are frozen together). This is deprecated, with pack ice now referring to drift ice with a concentration equal to or above 7/10; however, other usages are still common." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "drift ice" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/DriftIce" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T19:46:20Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001518", "lbl" : "drifting sea ice mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A drift ice mass which is composed primarily of sea ice.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "drift ice" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/DriftIce" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T19:50:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001519", "lbl" : "area of pack ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area in which masses of drift ice aggregate such that they cover a minimum of 7/10ths-8/10ths of the surface the water body they are floating in.", "xrefs" : [ "http://hdl.handle.net/11329/394", "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T20:02:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001520", "lbl" : "area of sea ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone that overlaps that part of a water body covered or partially covered by sea ice.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "area with sea ice" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T20:02:00Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T20:03:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001521", "lbl" : "area of drift ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area in which masses of drift ice aggregate such that they cover less than 7/10ths of the surface the water body they are floating in.", "xrefs" : [ "http://hdl.handle.net/11329/394", "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T20:38:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001522", "lbl" : "fast ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of sea ice which 1) is less than 2 meters in thickness and 2) forms along the coast, where it is attached to the shore, to an ice wall, to an ice front, or between shoals or grounded icebergs.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Fast ice is central to the livelihoods of Arctic coastal communities who use it to access fishing and hunting grounds. Vertical fluctuations may be observed during changes of sea level. Fast ice may be formed on site from sea water or by freezing of pack ice of any age to the shore, and it may extend a few yards (meters) or several hundred miles (kilometers) from the coast. Fast ice may be more than one year old and may then be prefixed with appropriate age category (old, second- year, or multiyear). If it is thicker than about 7 ft (2 m) above sea level, it is called an ice shelf." ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/FastIce" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T20:41:13Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001523", "lbl" : "frazil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Small, needle-like (spicules), plate-like, or discoid crystals derived from nearly pure fresh water, suspended in a water body.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary/term/frazil" ] }, "comments" : [ "Typically 3 to 4 millimeters in diameter. These may form in both marine water and fresh water. They represent the first stages of sea ice growth; they merge under calm conditions to form thin sheets of ice on the surface (frazil ice), and consist of nearly pure fresh water. In fresh water, they form in supercooled water that is too turbulent to permit coagulation into sheet ice. This is most common in swiftly flowing streams. They may accumulate as anchor ice on submerged objects obstructing the water flow." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "frazil crystals" }, { "pred" : "hasExactSynonym", "val" : "needle ice" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Needs to have axioms added pertaining to the semantics of colloids and suspensions once they have been resolved see: https://github.com/pato-ontology/pato/issues/91#issuecomment-290711238\n\nCurrently the new ice classes are not specific to sea water as they may form in non marine systems, but it would be good to confirm this especially for frazil ice." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T21:09:21Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001524", "lbl" : "frozen land", "type" : "CLASS", "meta" : { "definition" : { "val" : "Land which is below the freezing point of water.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Perennially and seasonally frozen ground can vary from being partially to extensively frozen depending on the extent of the phase change. It may be described as hard frozen ground, plastic frozen ground, or dry frozen ground, depending on the pore ice and unfrozen water contents and its compressibility under load." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "frozen ground" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/FrozenGround" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T21:18:19Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001525", "lbl" : "hard-frozen soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Frozen soil which is firmly cemented by water ice, is subject to brittle failure, and exhibits practically no consolidation under load.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T21:23:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001526", "lbl" : "frozen soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is below the freezing point of water." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T21:26:59Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001527", "lbl" : "plastic-frozen soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Frozen soil which is cemented by water ice but has viscous properties due to its high, unfrozen water content and therefore will compress and deform under load.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T21:23:25Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T21:28:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001528", "lbl" : "friable-frozen soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Frozen soil which has very low total water content and is not cemented by ice; its compressibility is the same as that of unfrozen soils having the same composition, total water content and density.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dry-frozen soil" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T21:33:56Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001529", "lbl" : "glacier snout", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which constitutes that part of a glacier which has the lowest elevation.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glacier terminus" }, { "pred" : "hasExactSynonym", "val" : "glacier toe" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/GlacierTerminus" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-14T21:52:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001530", "lbl" : "water ice core", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which has been drilled from an accumulation of snow and ice that has built up over many years and that has recrystallized and has trapped air bubbles from previous time periods.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The composition of an ice core can be used to reconstruct past climates and climate change; typically removed from an ice sheet (Antarctica and Greenland) or from high mountain glaciers elsewhere." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ice core" }, { "pred" : "hasBroadSynonym", "val" : "ice sample" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/IceCore" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "TODO: add axiom to show this is the output of a \"sampling process\"" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-17T16:38:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001531", "lbl" : "sea ice field", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice field which is primarily composoed of sea ice floes greater than 10 kilometers across.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The floes in a sea ice field must be greater than 10 km across, at least at one location in the field." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "floating ice field" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/IceField" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-17T17:00:31Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001532", "lbl" : "glacier ice field", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice field which is constituted by a continuous accumulation of snow and glacier ice that completely fills a mountain basin or covers a low-relief mountain plateau.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The definition in the GCW assessment notes that the depth of snow or ice must be of \"a substantial depth\". This is in need of specification. When the thickness become great enough, tongues of ice overflow the basins or plateaus as Valley Glaciers." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-17T17:14:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001533", "lbl" : "mass ice flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "An advective transport process during which a mass of ice is transported from one location to another." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T17:51:48Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001534", "lbl" : "tabular iceberg", "type" : "CLASS", "meta" : { "definition" : { "val" : "An iceberg which 1) has a flat upper surface, 2) is derived from an ice shelf, ice tongue, or floating tidewater glacier via detachment.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Newly formed tabular icebergs have nearly vertical sides and flat tops. In the Antarctic, they may be tens of kilometers wide, up to 160 km (100 miles) long, and as much as 300 m (1000 ft) thick, with about 30 m (100 ft) exposed above the sea surface. In the Arctic, large icebergs of this type are called ice islands, but they are considerably smaller than the largest of the antarctic variety. Has synonyms tabular berg, table iceberg. Formerly called barrier iceberg." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "barrier iceberg" }, { "pred" : "hasExactSynonym", "val" : "table iceberg" }, { "pred" : "hasExactSynonym", "val" : "tabular berg" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T18:30:22Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001535", "lbl" : "floeberg", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which is composed of a large amount of sea ice in the form of a hummock or a group of such hummocks, frozen together and separated from any surrounding ice by sea water.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Floebergs may float up to 17 ft (5 m) above sea level." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T19:00:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001536", "lbl" : "sea ice mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which is composed primarily of sea ice." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T19:06:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001537", "lbl" : "sea ice hummock", "type" : "CLASS", "meta" : { "definition" : { "val" : "An elevation which is formed by pressure at the point of contact between ice floes, resulting in a conglomeration of broken ice.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Sea ice hummocks may be fresh or weathered. The weathering of hummocks is similar to young mountain peaks with steep slopes that erode into smooth, rolling hills, in this case during the summer melt season. The submerged volume of broken ice under the hummock, forced downwards by pressure, is termed a bummock." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T19:11:58Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001538", "lbl" : "frost-formed hummock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hummock which is primarily composed of soil that has been pushed up by frost action.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Permafrost hummocks are often found in uniformly spaced large groups. Hummocks can form in areas of permafrost or seasonally frozen ground, and are one of the most common surface features of the Arctic." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "hummock" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T19:11:58Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T19:17:20Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001539", "lbl" : "branched valley glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A valley glacier which has one or more tributary glaciers as parts.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tidewater_glacier#Types_of_glaciers", "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T19:59:05Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001540", "lbl" : "simple valley glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A valley glacier which does not have any tributary glaciers flowing into it.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tidewater_glacier#Types_of_glaciers", "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Definition should be revised in a positivist mode." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T20:03:37Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001541", "lbl" : "tributary glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacier which flows into a larger glacier.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Tributary glaciers usually merge into a glacier which is at lower elevation." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Valley_glacier" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T20:08:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001542", "lbl" : "ice surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer which is composed primarily of ice." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T20:22:31Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001543", "lbl" : "water ice surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice surface layer which is primarily composed of water ice." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T20:23:31Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001544", "lbl" : "two-dimensional fiat ice surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "An two-dimensional continuant fiat boundary which overlaps the surface layer of a mass of ice." }, "comments" : [ "This class was created during a semantic harmonisation exercise with the SWEET resource, currently adminstered by Earth Science Information Partners. Its subclass(es) are mapped to the corresponding SWEET terms, which were determined to align with fiat boundaries rather than physical ones." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T20:25:26Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001545", "lbl" : "two-dimensional fiat water ice surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A two-dimensional fiat ice surface which overlaps the surface layer of a mass of water ice." }, "comments" : [ "This class was created during a semantic harmonisation exercise with the SWEET resource, currently adminstered by Earth Science Information Partners. It is mapped to the corresponding SWEET term, which was determined to align with fiat boundaries rather than physical ones." ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/IceSurface" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T20:28:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001546", "lbl" : "iceberg", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which has broken away from a larger ice mass on land, such as a glacier or ice shelf, and may be either afloat or aground.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The greater part of an iceberg's mass (4/5 to 8/9) is below sea level, which makes them dangerous to shipping in high and mid-latitude regions of the ocean. The top of an ice berg usually protrudes more than 5 m above water-level and typically extends from tens of meters to many tens of kilometres across. Icebergs may be described as tabular, dome-shaped, sloping, pinnacled, dry-docked, blocky, weathered or glacier bergs in addition to having a size qualifier. Icebergs are not sea ice, when they melt they add fresh water to the ocean. The unmodified term \"iceberg\" usually refers to the irregular masses of ice formed by the calving of glaciers along an orographically rough coast, whereas tabular icebergs and ice islands are calved from an ice shelf, while bergs formed from sea ice are called floebergs. In decreasing size, they are classified as: ice island (few thousand square meters to 500 km^2 in area); tabular iceberg; iceberg; bergy bit (less than 5 m above sea level, between 1 and 200 m^2 in area); and growler (less than 1 m above sea level, about 20 m^2 in area). Alaskan icebergs rarely exceed 500 feet in maximum dimension. Antarctic icebergs originate from the ice mass of the Antarctic continent that has accumulated over many thousands of years." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/Iceberg" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T20:46:21Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001547", "lbl" : "land ice mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which has formed over land.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Land ice is any part of the Earth's seasonal or perennial ice cover that has formed over land as the result, principally, of the freezing of precipitation; opposed to sea ice formed by the freezing of seawater. Thus, an iceberg or tabular iceberg is land ice as well as its parent glacier, ice sheet, or ice shelf. The two major concentrations of land ice are the ice sheets of Greenland and Antarctica. Glaciers and ice caps are the other important forms; however, some members of the glaciology community hold that glaciers (i.e. rock glaciers) need not have any ice." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/LandIce" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T20:56:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001548", "lbl" : "freezing", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material congelation process during which a liquid turns into a solid when its temperature is lowered below its melting point.", "xrefs" : [ "https://en.wikipedia.org/wiki/Freezing" ] }, "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T21:13:16Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001549", "lbl" : "freezing of water into water ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freezing process during which liquid water is transformed into water ice." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-01-31T21:16:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001550", "lbl" : "sea-ice lead", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice lead which occurs in a marine water body and is bounded by sea ice.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "lead" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/Lead" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-02-27T19:08:33Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001551", "lbl" : "ice lead", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer of a water body which has been formed as the result of surface ice fracturing and moving apart.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Generally, leads are wide enough (and deep enough) for navigation by surface vessels. The term is generally applied to linear features. 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Subclasses can be created for such cases.\nSea surface layer is also used to refer to the surfaces of oceans." ], "subsets" : [ "\"envoMarine\"", "\"envoPlastics\"@en" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-03-06T01:22:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001582", "lbl" : "forest floor", "type" : "CLASS", "meta" : { "definition" : { "val" : "Land which is present within a forest biome.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/659" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-03-06T20:05:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001606", "lbl" : "speed of a water current", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://vocab.nerc.ac.uk/collection/P01/current/LCSAZZ01/" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-03-19T16:29:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001607", "lbl" : "water current", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydroform which is maintained by a continuous, directed movement of water, generated by disequilibria in a water mass." }, "comments" : [ "Depth contours, shoreline configurations and interaction with other currents influence a current's direction and strength." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-03-19T16:31:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001608", "lbl" : "kerosene oil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fuel oil which 1) is derived from petroleum oil, 2) has a strong odor, 3) produces large quantities of soot relative to other fuel oils, 4) is less refined than fuel oils such as paraffin.", "xrefs" : [ "https://en.wikipedia.org/wiki/Kerosene", "https://www.nationwidefuels.co.uk/difference-kerosene-paraffin/" ] }, "comments" : [ "For speakers of British English, kerosene is often referred to as paraffin." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "kerosene" }, { "pred" : "hasBroadSynonym", "val" : "kerosine" }, { "pred" : "hasExactSynonym", "val" : "kerosine oil" }, { "pred" : "hasExactSynonym", "val" : "liquid kerosene" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-03-21T16:13:05Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001609", "lbl" : "cryospheric layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which is part of a cryosphere." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-09T13:05:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001610", "lbl" : "active layer in a cryosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of environmental material which is subject to freeze-thaw cycles." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "active layer" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-09T13:08:48Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001611", "lbl" : "thawing process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A warming process during which the thermal energy in a portion of environmental material is sufficient to melt water-based ice or snow.", "xrefs" : [ "https://en.wiktionary.org/wiki/thaw", "https://wikidiff.com/melt/thaw" ] }, "comments" : [ "Note that ice or snow need not be present in the material in order for it to undergo thawing. The semantics of 'thaw' vs 'melt' are debated in fields such as permafrost geology/physics. This module is thus likely to be dynamic." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "thawing" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-09T13:17:56Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001612", "lbl" : "material warming process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the temperature of a portion of environmental material is increased, along with the kinetic energy of its constituent molecules." }, "comments" : [ "Note that melting need not involve warming (e.g. due to extreme gravitational effects). See the melting hierarchy for more terms." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-09T13:26:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001613", "lbl" : "permafrost thawing process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thawing process during which permafrost is warmed beyond the melting point of water-based ice, snow, or other forms of solid water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Permafrost" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-09T13:41:52Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001614", "lbl" : "ice-bearing permafrost", "type" : "CLASS", "meta" : { "definition" : { "val" : "Permafrost which contains inclusions of water-based ice." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-09T13:45:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001615", "lbl" : "material cooling process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the temperature of a portion of environmental material is decreased, along with the kinetic energy of its constituent molecules." }, "comments" : [ "Note that ice formation, freezing, etc may have this process as a part, but may also occur without temperature decreases (e.g. through extreme gravitational effects). See the material congelation process hierarchy for more." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-09T14:00:20Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001616", "lbl" : "bare soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is directly exposed to the atmosphere - with no intervening layer of plant life or other cover - and thus the effects of weathering and erosion." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-15T10:15:14Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001617", "lbl" : "snow accumulation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which the mass of snow on a surface increases.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "This term is used both as a process and as an amount of mass added. Semantically speaking these are two distinct concepts (e.g., accumulation results in accumulation_amount of ice or snow gain), though accumulation_amount would more likely be an attribute.\n\nThe scope of this term varies depending on the definition. Some definitions constrain themselves snow or ice added to glaciers; while others also include ice fields, snow cover, and/or floating ice. How to resolve this depends on the scope desired.\n\nSome definitions include additional discussion of the the physics involved which would be useful for connecting glacier ontologies to atmospheric, hydrologic, etc. ontologies. This information should be captured no matter how the inconsistencies above are resolved." ], "xrefs" : [ { "val" : "http://sweetontology.net/phenCryo/Accumulation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-24T18:29:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001618", "lbl" : "ice accumulation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which ice forms in an environmental material or an existing accumulation of ice increases in mass.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "xrefs" : [ { "val" : "http://sweetontology.net/phenCryo/Accumulation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-24T18:48:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001619", "lbl" : "snow and ice accumulation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which a accumulation of snow and ice forms or increases in mass.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "xrefs" : [ { "val" : "http://sweetontology.net/phenCryo/Accumulation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-24T18:59:45Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001620", "lbl" : "mass of ice and snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A object which is composed primarily of water-based snow and ice." }, "xrefs" : [ { "val" : "http://sweetontology.net/phenCryo/Accumulation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-24T19:08:03Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001621", "lbl" : "englacial", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer being located within a glacier or ice sheet, between their summer surface or bed.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-24T19:51:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001622", "lbl" : "englacial process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system process which occurs within a glacier or ice sheet.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "xrefs" : [ { "val" : "http://sweetontology.net/phenCryo/Englacial" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-24T19:59:58Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001623", "lbl" : "glacial summer surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacial surface layer which is present at the point in time where any given part of a glacier reaches its minimum annual mass.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Note that the glacial summer surface is diachronous. The time that the summer surface is present on a glacier can vary from point to point along the entire glacier. That is, while a high-elevation region of a glacier may have reached its minimum, lower elevation regions may still be ablating. The summer surface is the surface on which the first snow of the new balance year falls.\nIt is easily detectable when it consists of glacier ice, which now includes superimposed ice added during the previous balance year. In the firn area it is recognizable as a well-marked crust, that is, a thin, relatively strong layer with a density near that of ice, and sometimes also (or instead) as a layer of depth hoar at the base of the current year's accumulation. The crust typically originates by recrystallization of the surface snow in late summer to form glaze.\nIt may also be marked by an accumulation of sediment or wind-blown dust. It can be difficult to detect when melting and snowfall alternate during the transition between the ablation season and the accumulation season. In some mass-balance programmes the summer surface is 'labelled' in the vicinity of stakes with a distinctive material, such as sawdust, during a visit late in the ablation season." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-24T20:10:03Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001624", "lbl" : "glacial bed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A glacial surface layer which is adjacent to the bedrock or debris over which a glacier flows.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-24T20:21:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001625", "lbl" : "polar tundra ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tundra ecosystem which is subject to polar climatic conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-04-26T16:02:09Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001629", "lbl" : "polymetallic nodule ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which is determined by the presence of rounded mineral concretions primarily composed of manganese hydroxides on the seafloor." }, "comments" : [ "These are typically found in deep-sea environments - where polymetallic nodules (rounded mineral concretions containing manganese hydroxides and a variety of other minerals) are found at the surface at densities of up to 70 % of the surface area. The nodules provide a substrate for attached hard-bottom fauna to settle in areas where soft-sediments prevail." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "manganese nodule ecosystem" }, { "pred" : "hasRelatedSynonym", "val" : "polymetallic nodule field" } ], "xrefs" : [ { "val" : "https://orcid.org/0000-0002-5607-4012" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-06T09:41:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001630", "lbl" : "submarine groundwater discharge process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water flow process during which fresh or brackish groundwater flows from from a landmass into the sea.", "xrefs" : [ "https://en.wikipedia.org/wiki/Submarine_groundwater_discharge" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-22T14:15:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001631", "lbl" : "groundwater discharge process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water flow process during which water flows out of an aquifer.", "xrefs" : [ "https://en.wikipedia.org/wiki/Groundwater_discharge" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-22T14:18:15Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001632", "lbl" : "groundwater flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water flow process during which water is transported through an aquifer.", "xrefs" : [ "https://en.wikipedia.org/wiki/Groundwater_discharge" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-22T14:22:43Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001633", "lbl" : "agricultural pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental pollution process during which contaminants derived from agricultural activity are released into an environmental system.", "xrefs" : [ "INTERNAS:WS2", "http://www.awi.de/internas" ] }, "comments" : [ "Examples include the release of pesticies and/or antibiotic-laden animal waste into water bodies." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Verschumutzung durch Landwirtschaft" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-29T08:01:44Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001634", "lbl" : "agricultural landscape diversification process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An active agri-ecosystem management process during which the variability of land use types or the spatial structure of land under agricultural production is increased.", "xrefs" : [ "INTERNAS:WS2", "http://awi.de/internas", "https://www.ipbes.net/system/tdf/downloads/pdf/ipbes_4_19_annex_ii_spm_pollination_en.pdf?file=1&type=node&id=28363" ] }, "comments" : [ "This includes the introduction or balancing of cover types such as forests, crops, grassland, or land covered by crop cultivars such as wheat, maize, legumes, vegetables." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Agrarlandschaftsdiversifizierung" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-29T08:19:55Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001635", "lbl" : "biodiversity conservation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A conservation process during which the variability of life - from genes to ecosystems - is preserved." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-29T08:25:13Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001636", "lbl" : "insect conservation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biodiversity conservation process during which the variability of insect communities, or parts thereof, is preserved.", "xrefs" : [ "INTERNAS:WS2", "http://www.awi.de/internas", "http://www.eionet.europa.eu/gemet/concept/15073" ] }, "comments" : [ "Like other forms of conservation, planned management actions (i.e. preservation, maintenance, sustainable use, recovery, enhancement) of natural resources or of a particular ecosystem is typically employed to halt, reverse or slow-down the die off of insects from the impacts of anthropic exploitation or pollution." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-29T08:26:59Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001637", "lbl" : "agricultural specialisation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An active agri-ecosystem management process during which an ecosystem is modified for the production of one or a small collection of crops or other agricultural products.", "xrefs" : [ "INTERNAS:WS2", "http://www.awi.de/internas" ] }, "comments" : [ "Agricultural specialisation is often a means to produce sufficiently large quantities of crops to compete in global markets. 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"hasExactSynonym", "val" : "interglacial period" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-30T21:17:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001643", "lbl" : "ice age", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temporal interval during which a planet's surface and atmospheric temperatures fall, resulting in the presence or expansion of continental and polar ice sheets or alpine glaciers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_age" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-05-30T21:21:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001644", "lbl" : "material primarily 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"val" : "A solid material which does not have a regularly organised internal structure." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-06-02T11:07:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001647", "lbl" : "colloid suspended in a hydrosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A colloidal suspension which is dispersed through a part of a hydrosphere." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-06-02T11:11:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001648", "lbl" : "suspended colloidal sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Colloidal sediment which is 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"http://purl.obolibrary.org/obo/ENVO_01001657", "lbl" : "calving of ice onto land", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice calving process during which a mass of ice falls from a larger mass onto land.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-24T17:33:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001658", "lbl" : "calving of ice into water", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice calving process during which a mass of ice falls from a larger mass into a body of water.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : 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Many, but not all, Periglacial Environments possess Permafrost; all are dominated by Frost Action processes." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "periglaciation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-24T17:39:31Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001660", "lbl" : "frost action process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which alternate freezing and thawing of moisture in soil, rock and other materials results modifications of those materials and in the formation of structures on, or in, the ground.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Frost action in soils describes the processes of Frost Heave that occurs in the ground during the freezing period, and Thaw Weakening that occurs as the seasonally Frozen Ground thaws. Although it normally refers to seasonal freezing and thawing processes and effects, the term Frost action has also been used to describe the long-term heaving that occurs when soils are subjected continuously to a freezing temperature over a long period of time (years). Frost action contributes to the mechanical weathering (disintegration or breakdown) of soil and rock materials, by frost wedging, Cryoturbation activity, and to the development of cryotexture and cryogenic fabric in soils." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-24T17:43:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001661", "lbl" : "frost jacking", "type" : "CLASS", "meta" : { "definition" : { "val" : "A frost action process during which objects embedded in the ground are cumulatively displaced upwards.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-24T17:43:13Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001662", "lbl" : "frost sorting", "type" : "CLASS", "meta" : { "definition" : { "val" : "A frost action process during which the soil particles are differentially displaced according to their size ranges." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-24T17:43:43Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001663", "lbl" : "frost wedging", "type" : "CLASS", "meta" : { "definition" : { "val" : "A frost action process during which the pressure of water freezing in cracks, crevices, pores, joints or bedding planes results in the mechanical disintegration, splitting or break-up of rock." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-24T17:43:49Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001664", "lbl" : "cryoturbation of soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A frost action process during which soil is displaced.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The processes that form irregular structures in earth materials characterized by folded, broken and dislocated beds, and lenses of unconsolidated deposits, including organic horizons and even bedrock. These processes include deep frost penetration, frost action, frost heaving, thaw settlement and all differential movements, including expansion and contraction due to temperature changes and the growth and disappearance of ground ice bodies, whether perennial or seasonal. Low temperatures alone are not enough to produce cryoturbation; the water-ice phase change is necessary. Cryoturbation is an important process in the development of patterned ground." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-24T17:44:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001665", "lbl" : "soil cryoturbate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of soil moved or disturbed by frost action.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-24T17:56:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001666", "lbl" : "glacial run", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water flow process which comprises a sudden‐onset high‐magnitude discharge of water and sediment from a glacial source", "xrefs" : [ "https://en.wikipedia.org/wiki/Jökulhlaup" ] }, "comments" : [ "Glacial runs occur in virtually all glaciated regions of the world and are most commonly directly sourced from any part of a glacier where water can accumulate into a lake. A jökulhlaup usually occurs because a glacial lake drains rapidly due to failure of an ice dam or moraine dam." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Jokuelhlaup" }, { "pred" : "hasExactSynonym", "val" : "Jokulhlaup" }, { "pred" : "hasExactSynonym", "val" : "Jökulhlaup" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1336-5554" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-03T14:50:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001667", "lbl" : "thalassic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer being derived from, part of, or otherwise dependent on the seas or oceans.", "xrefs" : [ "https://en.wiktionary.org/wiki/thalassic", "https://www.dictionary.com/browse/thalassic", "https://www.merriam-webster.com/dictionary/thalassic", "https://www.thefreedictionary.com/thalassic" ] }, "comments" : [ "This class takes the broader meaning of this term. Note that some usages refer to smaller bodies of water, as seas and gulfs, as distinguished from large oceanic bodies." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-15T18:16:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001668", "lbl" : "atmospheric frontal zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "Part of an atmosphere which contains a weather front, bounded by frontal surfaces.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Front" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "frontal zone" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T08:08:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001669", "lbl" : "mariculture process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aquaculture process during which marine organisms are cultivated in the open ocean, an enclosure in the ocean, or in tanks, ponds or raceways which are filled with seawater.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mariculture", "https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/mariculture" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mariculture" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-15T21:49:02Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001670", "lbl" : "open cage mariculture process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mariculture process during which organisms are cultivated in cages which allow the passage of materials such as wastes, pathogens, antibiotics, and - should a containment breach occur - cultivated organisms themselves to and from the surrounding marine environment.", "xrefs" : [ "https://www.foodandwaterwatch.org/sites/default/files/fs_1802_ocean-aquaculture-web.pdf", "https://www.tranaquaculture.com/" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-15T22:00:48Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001671", "lbl" : "open cage mariculture facility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A construction which contains the equipment needed to perform mariculture in open cages - permitting the exchange of material with the surrounding marine water.", "xrefs" : [ "https://qsr2010.ospar.org/media/assessments/p00442_Impacts_of_Mariculture.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-15T22:31:31Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001672", "lbl" : "frontal surface of a weather front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gaseous surface layer which is composed of the warmer air mass(es) along the horizontal density and temperature discontinuity in a weather front.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Front" ] }, "comments" : [ "As stated in the AMS Glossary, this is one interpretation of the term \"front\", namely \"frontal surfaces across which the horizontal density gradient is discontinuous (frontal surface usually refers specifically to the warmer side of the frontal zone);\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "frontal surface" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T08:25:43Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001673", "lbl" : "fluid surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer which is composed primarily of some liquid or gas." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T08:28:42Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001674", "lbl" : "lysocline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cline across which one or more solid environmental materials dissolve into their surrounding fluid." }, "comments" : [ "This cline is typically horizontal, with qualities varying with depth." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-22T17:08:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001675", "lbl" : "nutricline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cline across which nutrient content of a fluid changes rapidly." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-22T17:12:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001676", "lbl" : "marine cline", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cline which is part of a marine water body." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-22T17:19:02Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001677", "lbl" : "fluid interface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer which separates two portions of fluid with respect to either 1) a discontinuity of some fluid property or 2) some derivative of one of these properties in a direction normal to the interface.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Interface" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-22T17:29:44Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001678", "lbl" : "fluid layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which is composed primarily of some fluid." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-22T17:35:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001679", "lbl" : "fluid front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluid interface which separates two fluid masses with differing properties.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Front", "http://ww2010.atmos.uiuc.edu/(Gh)/guides/mtr/af/frnts/home.rxml", "https://en.wikipedia.org/wiki/Weather_front", "https://en.wikipedia.org/wiki/Front_(oceanography)" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-22T17:43:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001680", "lbl" : "gaseous front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluid front which is composed primarily of gaseous material and separates at least two gaseous masses." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-22T17:50:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001681", "lbl" : "weather front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Front", "https://en.wikipedia.org/wiki/Weather_front" ] }, "comments" : [ "This class refers to Earth's weather fronts. Other forms, not composed of air, are present on other planets and can be created on request. Note: \"Since the temperature distribution is the most important regulator of atmospheric density, a front almost invariably separates air masses of different temperature. Along with the basic density criterion and the common temperature criterion, many other features may distinguish a front, such as a pressure trough, a change in wind direction, a moisture discontinuity, and certain characteristic cloud and precipitation forms.\"" ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "meteorological front" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-07-22T17:57:21Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001682", "lbl" : "air mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object which is composed of a continuous mass of air." }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T07:54:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001683", "lbl" : "gaseous surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluid surface layer which is composed primarily of some gaseous material." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T08:30:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001684", "lbl" : "interface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which separates two portions of environmental material which possess 1) differing compositions, 2) a discontinuity of some property, or 3) some derivative of some property in a direction normal to the interface." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T09:28:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001685", "lbl" : "bubble", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of gas which is separated from its surroundings by either 1) a thin liquid layer or 2) a physical or compositional discontinuity." }, "comments" : [ "The thin liquid layer case applies to, e.g., soap bubbles in air. The physical or compositional discontinuity case applies to, e.g., bubbles of CO2 in air or bubbles of air in water." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-0569-2259" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001686", "lbl" : "mass of environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object which is composed primarily of an environmental material" }, "comments" : [ "This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T09:38:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001687", "lbl" : "mass of solid material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An mass of environmental material which is composed primarily of a solid environmental material" }, "comments" : [ "This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T09:41:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001688", "lbl" : "mass of fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object which is composed primarily of a fluid." }, "comments" : [ "This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fluid mass" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T09:42:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001689", "lbl" : "mass of gas", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object which is composed primarily of a gas." }, "comments" : [ "This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gaseous mass" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T09:44:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001690", "lbl" : "mass of liquid", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object which is composed primarily of a liquid." }, "comments" : [ "This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "liquid mass" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T09:45:03Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001691", "lbl" : "mass of compounded environmental materials", "type" : "CLASS", "meta" : { "definition" : { "val" : "An mass of environmental materials which has appreciable quantities of several individual materials, such that the removal of one would convert the mass into a different entity." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T09:47:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001692", "lbl" : "methane gas bubble", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bubble which is composed primarily of methane." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-0569-2259" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001693", "lbl" : "isobaric surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material isosurface within which pressure is approximately constant." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T13:42:03Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001694", "lbl" : "isohaline surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material isosurface within which salinity is approximately constant." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T13:42:42Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001695", "lbl" : "isopycnal surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material isosurface within which density is approximately constant." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T13:43:12Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001696", "lbl" : "isothermal surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material isosurface within which temperature is approximately constant." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T13:43:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001697", "lbl" : "atmospheric isobaric surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "An isobaric surface that is part of an atmosphere.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Constant-pressure_surface" ] }, "subsets" : [ "\"envoAtmo\"@en" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T13:44:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001701", "lbl" : "tropical environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which has a climate with continually high temperatures and with considerable precipitation, at least during part of the year.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Tropical_climate" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T13:58:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001702", "lbl" : "subtropical environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which has a climate with warm temperatures and with meagre precipitation.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Tropical_climate" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T14:50:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001703", "lbl" : "polar environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which is located in a part of an astronomical body subject to polar climatic conditions.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Polar_climate" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T14:53:26Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001704", "lbl" : "subpolar environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which is located in a part of an astronomical body subject to subpolar climatic conditions.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Polar_climate" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T16:37:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001705", "lbl" : "temperate environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment which is located in a part of an astronomical body subject to temperate climatic conditions.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Temperate_climate" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T16:41:52Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001706", "lbl" : "cold front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A weather front which is nonoccluded and which moves in the direction of the warmer air mass it is adjacent to, such that colder air will occupy the site where warmer air was previously present.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Cold_front" ] }, "comments" : [ "The direction of motion determines whether fronts are \"cold\", \"warm\", etc. A front is said to be cold if it's moving in the direction of the warmer air mass it is adjacent to. From the perspective of an observer on the ground, this appears as though the colder air \"replaces\" the warmer air mass." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-20T16:53:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001707", "lbl" : "warm front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A weather front which is nonoccluded and which moves in the direction of the colder air mass it is adjacent to, such that warmer air will occupy the site where colder air was previously present.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Warm_front" ] }, "comments" : [ "The direction of motion determines whether fronts are \"cold\", \"warm\", etc. A front is said to be cold if it's moving in the direction of the warmer air mass it is adjacent to. From the perspective of an observer on the ground, this appears as though the colder air \"replaces\" the warmer air mass." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-21T09:56:51Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001708", "lbl" : "anafront", "type" : "CLASS", "meta" : { "definition" : { "val" : "A weather front at which warm air is ascending to high altitudes along the frontal surface.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Anafront" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-21T10:00:40Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001709", "lbl" : "katafront", "type" : "CLASS", "meta" : { "definition" : { "val" : "A weather front at which warm air is descending to lower altitudes along the frontal surface.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Katafront" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-21T10:02:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001710", "lbl" : "intertropical front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A weather front which exists in an equatorial trough separating the air of the Northern and Southern Hemispheres of an astronomical body.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Intertropical_front" ] }, "comments" : [ "Note there is controversy if such fronts exist or at least are compatible with frontal theory." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tropical front" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-21T10:05:03Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001711", "lbl" : "upper air", "type" : "CLASS", "meta" : { "definition" : { "val" : "An air mass which is part of the free atmosphere, including the troposphere and stratosphere.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Upper-air" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-21T16:31:20Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001712", "lbl" : "free atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric layer which 1) is located above the planetary boundary layer, 2) in which the effect of friction between moving air masses and the planetary surface is negligible, and 3) in which the air is usually treated (dynamically) as an ideal fluid.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Free_atmosphere" ] }, "comments" : [ "\"The base of the free atmosphere is usually taken as the geostrophic wind level.\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-21T16:33:07Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001713", "lbl" : "upper front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A weather front which is part of a mass of upper air." }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : 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undercuts the neighbouring warm front in the occulsion zone, and 3) where the coldest air in the vicinity replaces less cold air towards the surface of the astronomical body.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Cold_occlusion", "http://glossary.ametsoc.org/wiki/Occluded_front" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-22T08:55:43Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001716", "lbl" : "warm occluded front", "type" : "CLASS", "meta" : { "definition" : { "val" : "An occluded front which is adjacent to a warm front 1) that is moving in the direction of the coldest air in the vicinity, 2) where the original cold front is forced aloft at the warm front surface, and 3) where the coldest air is replaced by less cold air at the surface of the astronomical body.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Occluded_front", "http://glossary.ametsoc.org/wiki/Warm_occlusion" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-22T08:56:14Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001717", "lbl" : "neutral occluded front", "type" : "CLASS", "meta" : { "definition" : { "val" : "An occluded front which is 1) adjacent to a cold and a warm front with no appreciable difference between the temperatures of their bordering air masses and 2) which creates a pressure trough, a wind-shift line, a band of cloudiness, and precipitation at the surface of the astronomical body.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Occluded_front" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-22T08:56:31Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001718", "lbl" : "secondary cold front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cold front which forms behind a frontal cyclone and within a cold air mass with an appreciable horizontal temperature gradient.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Secondary_cold_front", "http://glossary.ametsoc.org/wiki/Secondary_front" ] }, "comments" : [ "The direction of motion determines whether fronts are \"cold\", \"warm\", etc. A front is said to be cold if it's moving in the direction of the warmer air mass it is adjacent to. From the perspective of an observer on the ground, this appears as though the colder air \"replaces\" the warmer air mass." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-30T10:00:19Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001719", "lbl" : "katabatic wind", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric wind during which cold atmospheric gas flows downwards towards the surface of an astronomical body.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Katabatic_wind" ] }, "comments" : [ "\"From its etymology, the term means simply \"going down\" or \"descending,\" and thus could refer to any descending flow; some authors have further generalized it to include downslope flows such as the foehn or chinook even though they do not represent a flow of cold air. This concept has given rise to the expression katafront, which indicates flow down a sloped cold-frontal surface.\"" ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-30T10:29:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001720", "lbl" : "downslope katabatic wind", "type" : "CLASS", "meta" : { "definition" : { "val" : "A katabatic wind during which atmospheric gas flows down the slope of an elevation, typically during periods of light larger-scale winds.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Katabatic_wind" ] }, "comments" : [ "\"The many synonyms for downslope flow are sometimes used interchangeably, and this gives rise to ambiguity and confusion. Downslope can be used generically to denote any wind flow blowing down a slope, or it is used specifically for katabatic flows on any scale, such as the nocturnal slope-wind component of mountain–valley wind systems or mountain–plains wind systems.\" Note also that slope winds are typically classed separately from fall winds, which occur at larger scales." ], "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-30T10:34:48Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001721", "lbl" : "cooling-driven katabatic wind", "type" : "CLASS", "meta" : { "definition" : { "val" : "A katabatic wind which is driven by the cooling and subsequent sinking of atmospheric gas masses.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Katabatic_wind" ] }, "subsets" : [ "\"envoAtmo\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-30T10:40:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001722", "lbl" : "foehn wind", "type" : "CLASS", "meta" : { "definition" : { "val" : "A downslope katabatic wind during which warm, dry atmospheric gas descends along the lee side of a mountain range as a result of synoptic-scale, cross-barrier flow over that range.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Foehn", "http://glossary.ametsoc.org/wiki/Katabatic_wind" ] }, "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "Canterbury northwester." }, { "pred" : "hasNarrowSynonym", "val" : "aspre" }, { "pred" : "hasNarrowSynonym", "val" : "austru" }, { "pred" : "hasNarrowSynonym", "val" : "chinook", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Chinook" ] }, { "pred" : "hasNarrowSynonym", "val" : "favogn" }, { "pred" : "hasNarrowSynonym", "val" : "halny wiatr" }, { "pred" : "hasNarrowSynonym", "val" : "ljuka" }, { "pred" : "hasNarrowSynonym", "val" : "sky sweeper" }, { "pred" : "hasNarrowSynonym", "val" : "zonda" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-08-30T10:52:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001723", "lbl" : "adiabatic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental process during which a system does not thermally interact with its surroundings by virtue of a temperature difference between them.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Adiabatic" ] }, "comments" : [ "\"In an adiabatic process any change in internal energy (for a system of fixed mass) is solely a consequence of working. 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plume shaped." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-0569-2259" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001744", "lbl" : "drainage wind", "type" : "CLASS", "meta" : { "definition" : { "val" : "A downslope katabatic wind which is generated by the cooling of atmospheric gas in contact with terrain surfaces.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Drainage_wind" ] }, "comments" : [ "Note that slope winds are typically classed separately from fall winds, which occur at larger scales." ], "subsets" : [ "\"envoAtmo\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gravity wind", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Gravity_wind" ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-09-02T08:48:06Z" } ] } }, { "id" : 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"http://purl.obolibrary.org/obo/ENVO_01001751", "lbl" : "downburst", "type" : "CLASS", "meta" : { "definition" : { "val" : "A downdraft which is of high intensity and which spreads radially, with high speed, across the planetary surface upon reaching it.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Downburst" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-09-05T06:13:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001752", "lbl" : "dry macroburst", "type" : "CLASS", "meta" : { "definition" : { "val" : "A macroburst during which no or very little rain is generated.", "xrefs" : [ "https://en.wikipedia.org/wiki/Downburst" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-09-05T06:13:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001753", "lbl" : "wet macroburst", "type" : "CLASS", "meta" : { "definition" : { "val" : "A macroburst during which large amounts of rain are generated.", "xrefs" : [ "https://en.wikipedia.org/wiki/Downburst" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-09-05T06:16:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001754", "lbl" : "microburst", "type" : "CLASS", "meta" : { "definition" : { "val" : "A downburst during which high winds occur over an area less than four kilometres in diameter.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Downburst", "https://en.wikipedia.org/wiki/Downburst" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : 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"2019-10-07T09:46:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001764", "lbl" : "explosion-driven seismic vibration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A seismic vibration process which is caused by an explosion." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-07T09:52:12Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001765", "lbl" : "mass-wasting-driven seismic vibration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A seismic vibration process which is caused by mass wasting." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-07T09:57:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001766", "lbl" : "collapse-driven seismic vibration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A seismic vibration process which is caused by the collapose of a material entity, sending kinetic energy into astronomical body." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-07T10:03:26Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001767", "lbl" : "structural collapse process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the ability of a material entity to maintain its internal organisation fails, resulting in deformation and a breakdown of that organisation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Structural_failure" ] }, "comments" : [ "This is a very general concept, and should likely be elevated to OBO Core rather than held in ENVO." ], "basicPropertyValues" : [ { "pred" : 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"xrefs" : [ "https://en.wikipedia.org/wiki/Foreshock" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-07T13:54:59Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001772", "lbl" : "aftershock", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tectonic earthquake which 1) is embedded in a series of tectonic earthquakes, linked to the same release of energy in the crust and 2) occurs after the mainshock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Foreshock" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-07T13:54:59Z" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-07T13:59:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001773", "lbl" : "thrust fault", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fault across which older rocks are pushed above (away from the core of an astronomical body) younger rocks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thrust_fault" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-07T14:05:49Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001774", "lbl" : "blind thrust earthquake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tectonic earthquake which occurs along a thrust fault which does not breach the surface of an astronomical body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Blind_thrust_earthquake" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" 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"meta" : { "definition" : { "val" : "A large continuous area of land, either surrounded by sea or contiguous with another landmass." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-17T08:31:26Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001783", "lbl" : "liquid surface of an astronomical body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface of an astronomical body which is part of a water body present on that body." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-10-17T08:32:59Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001784", "lbl" : "compound astronomical body part", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an 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"http://purl.obolibrary.org/obo/ENVO_01001828", "lbl" : "anthropised ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem which is formed as a result of human activity or impact." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2023-09-07T16:56:05Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001829", "lbl" : "human settlement", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropised ecosystem which is determined by the presence of humans and their constructions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2023-09-07T16:58:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001830", "lbl" : "tropical biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to tropical climatic conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T15:56:17Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001831", "lbl" : "temperate biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to temperate climatic conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T15:57:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001832", "lbl" : "subtropical biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to subtropical climatic conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T15:57:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001833", "lbl" : "mediterranean biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to mediterranean climatic conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T15:58:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001834", "lbl" : "subpolar biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to subpolar climatic conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T15:58:56Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001835", "lbl" : "alpine biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to alpine altitudinal conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T15:59:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001836", "lbl" : "montane biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to montane altitudinal conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T16:00:33Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001837", "lbl" : "subalpine biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to subapline altitudinal conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T16:01:49Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001838", "lbl" : "arid biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biome which is subject to arid environmental conditions." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-06T16:06:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001839", "lbl" : "safe environment for living organisms", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment in which living organisms have a low likelihood of being harmed or killed" }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-07T16:34:23Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001840", "lbl" : "safe environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment in which material entities have a low likelihood of being damaged or destroyed." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This branch will be axiomatised in subsequent revisions, most likely using classes from NBO and OAE. See https://github.com/EnvironmentOntology/envo/pull/899 for a link trail." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-07T16:35:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001841", "lbl" : "volcanic soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "An andosol which derives its silica content from glass and tephra ejected during a volcanic eruption.", "xrefs" : [ "https://en.wikipedia.org/wiki/Andosols", "https://www.nrcs.usda.gov/Internet/FSE_DOCUMENTS/nrcs142p2_051232.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-08T16:48:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001842", "lbl" : "momentum transfer process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental process during which momentum is transferred from one material entity to another." }, "comments" : [ "Momentum is a bit tricky, it's the product of mass and velocity thus can be understood as rest energy and kinetic energy. But this is variable." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-20T14:50:39Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001843", "lbl" : "atmosphere-ocean momentum transfer process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A momentum transfer process which unfolds as winds generate drag at the bottom of the atmosphere,coupled to dynamical forcing at the surface of the ocean.", "xrefs" : [ "http://www.goosocean.org/components/com_oe/oe.php?task=download&id=34507&version=1.0&lang=1&format=1" ] }, "subsets" : [ "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-20T14:53:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001844", "lbl" : "ocean surface stress", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rate which inheres in an atmosphere-ocean momentum transfer process.", "xrefs" : [ "http://www.goosocean.org/components/com_oe/oe.php?task=download&id=34507&version=1.0&lang=1&format=1" ] }, "subsets" : [ "\"envoEOVs\"", "\"envoMarine\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-11-20T15:01:37Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001845", "lbl" : "hoar", "type" : "CLASS", "meta" : { "definition" : { "val" : "Frost which is composed of interlocking ice crystals formed by vapour transfer (sublimation followed by deposition) of water vapour on some surface.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hoar frost" }, { "pred" : "hasExactSynonym", "val" : "white frost" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-12T20:54:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001846", "lbl" : "depth hoar", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hoar which is usually cup-shaped and facetted and which forms within dry, low-density snow beneath the snow surface.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Depth hoar is associated with very fast crystal growth under large temperature gradients. Sometimes a layer of depth hoar forms just above, and may assist in identifying the summer surface. The low density and low strength of depth hoar can make it difficult to retrieve unbroken core sections during coring, and can complicate estimates of accumulation by microwave remote sensing. Layers of depth hoar also increase the likelihood of avalanching. This is one way in which firn formation may begin. Depth hoar is similar in physical origin to crevasse hoar." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-12T20:58:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001847", "lbl" : "hoarfrost", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-12T21:03:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001848", "lbl" : "rime", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water ice which 1) has a white or milky and opaque appearance, 2) has a granular texture, and 3) is formed as a result of the deposition and rapid freezing of supercooled water drops as they make contact with an exposed object.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Rime is denser and harder than hoarfrost, but lighter, softer, and less transparent than glaze. Rime is composed essentially of discrete ice granules and has densities as low as 0.2-0.3 g cm-3. Glaze is generally continuous but with some air pockets and has much higher densities. Factors that favor rime formation are small drop size, slow accretion, a high degree of supercooling, and rapid dissipation of latent heat of fusion. The opposite effects favor glaze formation. Both rime and glaze occur when supercooled water drops strike an object at a temperature below freezing. Such formation on terrestrial objects constitutes an ice storm; on aircraft, it is called aircraft icing (where rime is known as rime ice). Either rime or glaze may form on snow crystals, droxtals, or other ice particles in the atmosphere. When such a deposit is wholly or chiefly of rime, snow pellets result; when most or all of the deposit is glaze, ordinary hail or ice pellets result. The alternating clear and opaque layers of some hailstones represent glaze and rime, deposited under varying conditions around the growing hailstone." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The previously use definition was: Frost which is 1) composed primarily of granular ice tufts, 2) formed on the windward sides of exposed objects through contact with supercooled fog or cloud, and 3) built out directly against the wind." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-12T21:03:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-11-18T19:59:42.028Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001849", "lbl" : "glaze", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-12T21:04:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001850", "lbl" : "frost", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is primarily composed of minute ice crystals forming a fuzzy layer over a cold surface by direct deposition of water vapor.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736", "https://www.merriam-webster.com/dictionary/frost" ] }, "comments" : [ "In British usage, a day on which the minimum temperature at the level of the ground or on the tops of low, close-growing vegetation falls to -0.9C (30.4F) or below (also called a \"day with ground frost\"). In more general usage, \"frost\" can refer to the condition that exists when the temperature of the Earth's surface and Earthbound objects fall below the melting point of water (0 degrees Celsius or 32 degrees Fahrenheit). Depending upon the actual values of ambient-air temperature, dewpoint, and the temperature attained by surface objects, frost may occur in a variety of forms. These include a general freeze, hoarfrost (or white frost), and dry freeze (or black frost). If a frost period is sufficiently severe to end the growing season (or delay its beginning), it is commonly referred to as a killing frost." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-12T21:05:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001851", "lbl" : "geothermally active field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A field in which geothermal processes occur." }, "comments" : [ "In many geothermally active fields, wells can be drilled to obtain elements contained in solution in hot brines or to tap heat energy." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This will usually be a part of a rocky planet's crust, with that planet being of sufficient size and age to allow geothermal activity. Such activity may also arise from gravitational effects of large bodies near a rocky astronomical body." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-13T12:41:07Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001852", "lbl" : "energy transfer process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which one entity loses energy to another entity." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-13T13:34:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001853", "lbl" : "periglacial", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer being located in the vicinity of - but not adjacent to or within - a glacier or ice sheet.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-02-14T13:24:52Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001854", "lbl" : "hydrothermal field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geothermally active field within which geothermally heated aqueous fluids are discharged from the the surface of a rocky planet.", "xrefs" : [ "https://github.com/EnvironmentOntology/envo/issues/929" ] }, "comments" : [ "Hydrothermal activity in such fields often forming hot springs, geysers or other features at which anomalously hot water is released." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-04-08T18:29:51Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001856", "lbl" : "liquid accumulation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which the volume of liquid entity increases." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-05-18T14:39:20Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001857", "lbl" : "outgoing longwave radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An infrared radiation process which 1) transmits radiant energy has wavelengths between 3.0 and 100 μm, 2) is emitted from a planet and its atmosphere out to space in the form of thermal radiation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Outgoing_longwave_radiation" ] }, "comments" : [ "In the Earth's climate system, long-wave radiation involves processes of absorption, scattering, and emissions from atmospheric gases, aerosols, clouds and the surface." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "outgoing long-wave radiation" }, { "pred" : "hasExactSynonym", "val" : "up-welling long-wave radiation" }, { "pred" : "hasNarrowSynonym", "val" : "terrestrial long-wave flux" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-05-18T21:55:44Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001858", "lbl" : "cloud cover", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area density which inheres in a clouds by virtue of some influence exerted their mass exerts on a given area." }, "comments" : [ "Positioning under area density may need discussion." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-05-18T22:11:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001859", "lbl" : "dew point", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature of air at which air become saturated with water vapour and below which airborne water vapour will condense to form liquid water (dew).", "xrefs" : [ "https://en.wikipedia.org/wiki/Dew_point" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-05-18T22:22:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001860", "lbl" : "wind gust", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric wind which 1) has an increased rate relative to other winds in the same region and 2) is followed by a lull.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Gust", "https://en.wikipedia.org/wiki/Wind_gust" ] }, "comments" : [ "According to U.S. weather observing practice, gusts are reported when the peak wind speed reaches at least 16 knots and the variation in wind speed between the peaks and lulls is at least 9 knots. The duration of a gust is usually less than 20 seconds." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "gust" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-05-19T21:47:51Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001861", "lbl" : "shortwave radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An electromagnetic radiation process during which radiant energy with wavelengths in the visible, near-ultraviolet, or near-infrared spectra is realised.", "xrefs" : [ "https://en.wikipedia.org/wiki/Shortwave_radiation" ] }, "comments" : [ "There is no standard cut-off for the near-infrared range; therefore, the shortwave radiation range is also variously defined. It may be broadly defined to include all radiation with a wavelength of 0.1 micrometers and 5.0 micrometers or narrowly defined so as to include only radiation between 0.2 micrometers and 3.0 micrometers." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "short-wave radiation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-05-19T22:14:12Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001864", "lbl" : "photosynthetically active radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Electromagnetic radidation which involves radiant energy in a spectral range (wave band) between 400 to 700 nanometers, that photosynthetic organisms are able to use in the process of photosynthesis.", "xrefs" : [ "https://en.wikipedia.org/wiki/Photosynthetically_active_radiation" ] }, "comments" : [ "Many definitions specify that this is Solar radiation, but consistency is lacking." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PAR" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-05-19T22:41:55Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001865", "lbl" : "concentration of carbon dioxide in an atmosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of carbon dioxide when measured in air that is part of an atmosphere." }, "subsets" : [ "\"envoAtmo\"", "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-05-19T22:51:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001866", "lbl" : "well intervention", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process during which an oil or gas well is modified.", "xrefs" : [ "https://en.wikipedia.org/wiki/Well_intervention" ] }, "comments" : [ "Interventions may change state of the well or well geometry, provide well diagnostics, or manage the production of the well." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-02T13:21:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001867", "lbl" : "well stimulation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A well intervention during which the production of an oil or gas well is increased by improving the flow of hydrocarbons from the reservoir into the well bore.", "xrefs" : [ "https://en.wikipedia.org/wiki/Well_stimulation" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-02T13:52:57Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001868", "lbl" : "hydraulic fracturing", "type" : "CLASS", "meta" : { "definition" : { "val" : "A well stimulation technique during which bedrock formations are fractured through the injection of pressurized proppant-bearing liquid into a well-bore.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fracking" ] }, "comments" : [ "When the hydraulic pressure is removed from the well, small grains of hydraulic fracturing proppants (either sand or aluminium oxide) hold the fractures open." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "frac'ing" }, { "pred" : "hasExactSynonym", "val" : "fraccing" }, { "pred" : "hasExactSynonym", "val" : "fracing" }, { "pred" : "hasExactSynonym", "val" : "fracking" }, { "pred" : "hasExactSynonym", "val" : "hydrofracking" }, { "pred" : "hasExactSynonym", "val" : "hydrofracturing" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-02T13:54:58Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001869", "lbl" : "fracking liquid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid environmental material which is composed primarily of water ammended with thickening agents and proppants.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fracking" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "fracking water" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-02T17:50:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001870", "lbl" : "gas well", "type" : "CLASS", "meta" : { "definition" : { "val" : "A well which has been drilled in order to extract natrual gas from subterranean reservoirs and bring it to the surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oil_well" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-02T18:22:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001871", "lbl" : "pit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depression in the ground resembling a hole or cavity, either natural or anthropogenic.", "xrefs" : [ "https://www.thefreedictionary.com/pit" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-04T14:52:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001872", "lbl" : "manure pit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pit which is used for the collection and storage of manure.", "xrefs" : [ "https://encyclopedia2.thefreedictionary.com/Manure+Pit" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-1107-9135" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-04T14:55:12Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001873", "lbl" : "hatchery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A construction in which eggs are hatched under artificial conditions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hatchery" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-1107-9135" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-04T15:00:56Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001874", "lbl" : "poultry hatchery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hatchery in which the eggs of poultry are hatched under artificial conditions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hatchery#Poultry_hatcheries" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-1107-9135" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-06-04T15:07:21Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001875", "lbl" : "debris flow following rainfall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A debris flow which is causally preceded by rainfall." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-07-13T18:44:15Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001876", "lbl" : "graupel", "type" : "CLASS", "meta" : { "definition" : { "val" : "Snow which is composed of heavily rimed particles typically 2 to 5 millimeters in diameter (0.1 to 0.2 inch).", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Often indistinguishable from very small soft hail except for the size convention that hail must have a diameter greater than 5 mm. Sometimes distinguished by shape into conical, hexagonal, and lump (irregular) graupel." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "snow pellets" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Subclass by shape into conical, hexagonal, and lump (irregular) graupel. Mark Parsons notes that the formational processes may be a source of useful differentia to distinguish graupel from other snow types." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-07-22T19:10:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001877", "lbl" : "transient tracer", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-08-05T13:41:19Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001878", "lbl" : "oceanic transient tracer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A transient tracer role which inheres in chemical entities in seawater." }, "comments" : [ "Compounds which realise this role can be used in the ocean to quantify ventilation, transit time distribution and transport time-scales. These compounds are all conservative in seawater, or have well-defined decay functions, and a well-established source function over time at the ocean surface." ], "subsets" : [ "\"envoEOVs\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "marine transient tracer" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The axiomatisation includes the tracers mentioned in the corresponding GOOS EOV specification sheet, viewable here: https://www.goosocean.org/index.php?option=com_oe&task=viewDocumentRecord&docID=17476" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-08-05T13:41:33Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001879", "lbl" : "proglacial", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality which inheres in a bearer by virtue of the bearer in being in physical contact with, or close to, a glacial margin.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The meaning of \"close to\" is hard to represent accurately. Community agreement on this is not visible." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-09-09T18:22:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001880", "lbl" : "subglacial", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality which inheres in a bearer by virtue of the bearer in being in physical contact with or below a glacial bed.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The lower bound of \"below\" is ambiguous." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-09-09T18:28:52Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001881", "lbl" : "supraglacial", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality which inheres in a bearer by virtue of the bearer in being in physical contact with the upper surface of a glacier or objects on top of the glacier.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The lower bound of \"below\" is ambiguous." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-09-09T18:37:45Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001882", "lbl" : "surface hoar", "type" : "CLASS", "meta" : { "definition" : { "val" : "Hoar which a) forms on surfaces, b) occurs when the temperature of the surface is colder than the air above and colder than the frost point of that air.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "When buried by snowfall, surface hoar may be considered depth hoar. The crystals formed by surface hoar are usually leaf-, fern- or plate-shaped and facetted. Two types of surface hoar are the fernlike ice crystals deposited directly on a snow surface and the hoarfrost that has grown primarily in two dimensions, as on a window or other smooth surface." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-09-09T19:10:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001883", "lbl" : "hoar crystal", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water ice crystal which is a part of a deposit of hoarfrost and which only grows by desublimation.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "white frost crystal" }, { "pred" : "hasExactSynonym", "val" : "hoar frost crystal" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-09-09T19:31:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001884", "lbl" : "surface landform", "type" : "CLASS", "meta" : { "definition" : { "val" : "A landform which occurs on the surface of an astronomical body." }, "comments" : [ "The usage of \"surface\" here aligns with that of planetary surface: in contact with the atmosphere or space. The extent of the \"surface\" can vary. For rocky planets like Earth, astrogeologists consider the crust as the surface." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "geographic feature" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-15T09:16:23Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001885", "lbl" : "submerged landform", "type" : "CLASS", "meta" : { "definition" : { "val" : "A landform which is submerged underneath a body of liquid." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-15T09:38:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001886", "lbl" : "landform", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid astronomical body part which has been formed from and is composed primarily of the matter of that astronomical body.", "xrefs" : [ "https://en.wikipedia.org/wiki/Landform" ] }, "comments" : [ "Landforms may be natural or anthropogenic. This term has often has loose usage when referencing entities which are either subterranean or submerged below water bodies. In some cases, oceans themselves are considered landforms. Here, we have provided subclasses to resolve this ambiguity, but place oceans and other water bodies elsewhere.In later revisions, this hiearchy is likely to be reordered based on the formation processes of the entities within it." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-15T09:40:37Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001887", "lbl" : "letter paper", "type" : "CLASS", "meta" : { "definition" : { "val" : "A paper product which has been manufactured to facilitate the writing of letters." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-15T12:14:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001888", "lbl" : "calcic spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral spring through which water with elevated concentrations of calcium hydroxide flows." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-08T13:17:37Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001889", "lbl" : "lithia spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral spring through which water with elevated concentrations of lithium salts flows." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-08T13:33:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001890", "lbl" : "chalybeate spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spring through which water with elevated concentrations of iron salts flows." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-08T13:36:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001891", "lbl" : "alum spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spring through which water with elevated concentrations of hydrated double sulfate aluminium salts flows." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-08T13:37:57Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001893", "lbl" : "salt spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral spring through which water with elevated concentrations of sodium, calcium, or magnesium salts flows." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "saline spring" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-08T13:40:07Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001894", "lbl" : "alkaline spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral spring through which water with a high pH flows." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-08T13:41:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001895", "lbl" : "soda spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral spring through which water with elevated levels of dissolved carbon dioxide gas flows." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-08T13:43:57Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001896", "lbl" : "radioactive spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral spring through which water with elevated levels of radioactive material flows." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-08T13:44:42Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001897", "lbl" : "neutral spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spring through which water with a neutral pH flows.", "xrefs" : [ "https://orcid.org/0000-0002-4366-3088", "MA:ma" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-11T10:29:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001898", "lbl" : "acidic spring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spring through which water with a low pH flows.", "xrefs" : [ "https://orcid.org/0000-0002-4366-3088", "MA:ma" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "acid spring" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-11T10:31:09Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01001899", "lbl" : "reef", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-06-28T12:00:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003000", "lbl" : "spacecraft", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vehicle designed to fly in outer space.", "xrefs" : [ "https://en.wikipedia.org/wiki/Spacecraft" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6670-9157" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003001", "lbl" : "water-holding capacity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A disposition of a material entity which is realised when it is saturated with liquid water." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003002", "lbl" : "particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of solid material which is either 1) a minute fragment of a larger mass or 2) one of a collection of small masses composing an aggregate.", "xrefs" : [ "https://en.wiktionary.org/wiki/particle" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "grain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003003", "lbl" : "particle of clay", "type" : "CLASS", "meta" : { "definition" : { "val" : "A particle which 1) is composed primarily of hydrous aluminium phyllosilicate minerals, in turn composed of aluminium and silicon ions bonded into tiny, thin plates by interconnecting oxygen and hydroxide ions, and 2) is or was part of a portion of clay.", "xrefs" : [ "https://en.wikipedia.org/wiki/Clay#Properties" ] }, "comments" : [ "The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "clay particle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003004", "lbl" : "derives from part of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist through the separation or transformation of a part of the old entity, and the new entity inherits a significant portion of the matter belonging to that part of the old entity." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003005", "lbl" : "day", "type" : "CLASS", "meta" : { "definition" : { "val" : "A one-dimensional temporal region which spans the duration an astronomical body completes one rotation on its axis." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003006", "lbl" : "rainy day", "type" : "CLASS", "meta" : { "definition" : { "val" : "A day during which water-based rainfall occurs." }, "comments" : [ "The threshold of precipitation at which humans consider a day 'rainy' is aribitrary." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003007", "lbl" : "percolation of water through soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Percolation during which water moves through the interstices of soil." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "water percolation through soil" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003008", "lbl" : "percolation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which a fluid is filtered through porous soild or semi-solid materials.", "xrefs" : [ "https://en.wikipedia.org/wiki/Percolation" ] }, "comments" : [ "This is not necessarily advective, and the properties of and processes participated in by the fluid may change." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003009", "lbl" : "drainage process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which a liquid which is not absorbed or otherwise held in place by a material is transported away from its location.", "xrefs" : [ "https://en.wikipedia.org/wiki/Drainage" ] }, "comments" : [ "Drainage may occur due to natural (e.g. gravitational) or artificial processes (e.g. pumping)" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003010", "lbl" : "convective transport process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process which arises spontaneously due to physical heterogeneities in a portion of a material and forces which act throughout its volume.", "xrefs" : [ "https://en.wikipedia.org/wiki/Convection" ] }, "comments" : [ "Most commonly, convective flows are generated by heterogeneities in density or the effects of gravity. When the cause of the convection is unspecified, convection due to the effects of thermal expansion and buoyancy can be assumed. Convection frequently occurs in fluids, but may also take place in soft solids or mixtures where particles can flow." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003011", "lbl" : "convective", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality of a process which is characteristic of processes that transport material within a volume due to the combined effects of material property heterogeneity and body forces across that volume.", "xrefs" : [ "https://en.wikipedia.org/wiki/Convection" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003012", "lbl" : "advective", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality of a process which is characteristic of process that transport material without, themselves, changing the qualities of those materials or the processes that are unfolding within them.", "xrefs" : [ "https://en.wikipedia.org/wiki/Advection" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003013", "lbl" : "material diffusion process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which material moves from a region of higher concentration to a region of lower concentration.", "xrefs" : [ "https://en.wikipedia.org/wiki/Diffusion" ] }, "comments" : [ "Diffusion is also applied to the movement of energy, thus the more specific label. This class will be repositioned (but with the core of its definition intact) if we include other forms of diffusion in ENVO." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "diffusion" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003014", "lbl" : "irradiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An energy transfer process during which a material entity receives energy through radiation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Irradiation" ] }, "comments" : [ "The term irradiation usually - but not always - excludes the exposure to non-ionizing radiation, such as infrared, visible light, microwaves from cellular phones or electromagnetic waves emitted by radio and TV receivers and power supplies. Please use the subclasses of this term for precision." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-11-03T20:29:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003015", "lbl" : "irradiation by ionizing radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Irradiation during which a material entity receives energy through ionizing radiation." }, "comments" : [ "Usage of this term typically excludes low or background levels of exposure, and is often linked with a purpose such as sterilisation. This class does not differentiate on such a basis, and subclasses - e.g. \"irradiation by ionizing radiation for sterilization\" can be created for specific applications if required." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "irradiation by ionising radiation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003016", "lbl" : "irradiation by non-ionizing radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Irradiation during which a material entity receives energy through non-ionizing radiation." }, "comments" : [ "Note that some forms of ultraviolet radiation can be ionising, thus it is not included in the logical axioms of this class." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "irradiation by non-ionising radiation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003017", "lbl" : "irradiation by photosynthetically active radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Irradiation during which a material entity receives energy through photosynthetically active radiation." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003018", "lbl" : "electromagnetic wave energy", "type" : "CLASS", "meta" : { "definition" : { "val" : "Wave energy which inheres in perpendicular electric and magnetic fields and which is realised when they oscillate and propagate.", "xrefs" : [ "https://en.wikipedia.org/wiki/Electromagnetic_radiation", "https://www.studysmarter.us/explanations/physics/turning-points-in-physics/electromagnetic-waves/" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "electromagnetic radiant energy" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003019", "lbl" : "wave energy", "type" : "CLASS", "meta" : { "definition" : { "val" : "Energy which inheres in a wave and is realised during its propagation." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003020", "lbl" : "fiat part of an astronomical object", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an environmental system whose boundaries are determined by fiat." }, "comments" : [ "Subclasses of this class have fiat (and only fiat) boundaries - that is, boundaries which are determined by human consensus or opinion rather than (and sometimes in contrast to) well-defined physical discontinuities. We distinguish these from entities that have fuzzy or hard to define boundaries that do overlap some form of physical discontinuity." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_01003021", "lbl" : "area of high atmospheric pressure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gaseous part of an atmosphere in which gases have increased atmospheric pressure." }, "comments" : [ "Air is not specified directly (although the definition subsumes air masses) to allow for other forms of low pressure areas in planetary atmospheres." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000000", "lbl" : "hypodermic needle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hypodermic needle is a medical instrument made from a hollow needle. It is commonly used with a syringe to inject substances into the body of an organism.", "xrefs" : [ "GEMINA:ag", "https://en.wikipedia.org/wiki/Hypodermic_needle" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Hypodermic_needle" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000001", "lbl" : "textile", "type" : "CLASS", "meta" : { "definition" : { "val" : "A textile is a manufactured product comprised of a network of natural or artificial fibers (often referred to as thread or yarn).", "xrefs" : [ "GEMINA:ag", "https://en.wikipedia.org/wiki/Textile" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Textile" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000002", "lbl" : "bedclothing", "type" : "CLASS", "meta" : { "definition" : { "val" : "Bedclothing is a textile covering used on a bed as a sheet, blanket, or pillowcase.", "xrefs" : [ "GEMINA:ag", "URL:http://dictionary.reference.com/search?q=bedclothing&r=66", "URL:http://www.m-w.com/dictionary/bedclothes" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000003", "lbl" : "pockmark field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pockmark field is an undersea feature formed by shallow seabed depressions, typically several tens of metres across and a few metres deep. Generally, they are formed in soft, fine-grained seabed sediments by the escape of fluids (gas or water, but mainly methane) into the water column.", "xrefs" : [ "GEMINA:ag", "https://en.wikipedia.org/wiki/Pockmark" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000004", "lbl" : "nesting material", "type" : "CLASS", "meta" : { "definition" : { "val" : "Nesting material is an animal habitation consisting of matierals used to cushion, insulate and protect the young of the organism. The adult will use the material to form a protective structure to house and raise their young. Nests are built primarily by birds, but also by mammals, fish, insects and reptiles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Nest" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000005", "lbl" : "obsolete livestock-associated habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "Livestock is an animal-associated habitat consisting of any domestic or domesticated animal intentionally raised for food or in the production of food or raised as stock to produce food or fibre, in an agricultural setting or for its labour or pen-raised animals raised on licensed game farm operations. Livestock include: bovine animals (including buffalo and bison), ovine animals, porcine animals, caprine animals, , poultry, bees, equine animals, cervidae animals; animals of the genus Lama; ratites (Emu, Ostrich, and Rhea), fish or shellfish in aquaculture facilities, and enclosed domesticated rabbits or hares raised for human food or fiber.", "xrefs" : [ "URL:http://dnr.wi.gov/org/land/er/publications/wolfplan/plan8.htm", "URL:http://www.pbs.org/strangedays/glossary/L.html", "URL:http://www.vbgov.com/vgn.aspxLivestock", "https://en.wikipedia.org/wiki/Livestock" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "livestock" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Livestock" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000006", "lbl" : "obsolete cultured habitat", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cultured habitat is an controlled habitat created by humans through laboratory techniques usually for the purposes of preparing cell, organ, tissue and plant tissue cultures.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cell_culture" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/envo#EnvO-Lite-GSC" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:01000312" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000007", "lbl" : "tissue culture", "type" : "CLASS", "meta" : { "definition" : { "val" : "Tissue culture is the culture of cells, tissues or organs in a nutrient medium under sterile conditions.", "xrefs" : [ "URL:http://www.fao.org/DOCREP/003/X3910E/X3910E23.htm#TopOfPage" ] }, "comments" : [ "This branch should be moved to OBI or a more appropriate ontology." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Tissue_culture" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000008", "lbl" : "cell culture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell culture is a growth of cells in vitro in an artificial medium for experimental research.", "xrefs" : [ "URL:http://stemcells.nih.gov/StemCells/Templates/StemCellContentPage.aspx?NRMODE=Published&NRNODEGUID=%7b3C35BAB6-0FE6-4C4E-95F2-2CB61B58D96D%7d&NRORIGINALURL=%2finfo%2fglossary%2easp&NRCACHEHINT=NoModifyGuest#cellculture" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Cell_culture" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000009", "lbl" : "plant tissue culture", "type" : "CLASS", "meta" : { "definition" : { "val" : "Plant tissue culture is the growth or maintenance of plant cells, tissues, organs or whole plants in vitro.", "xrefs" : [ "URL:http://www.sivb.org/edu_terminology.asp" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Plant_tissue_culture" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000010", "lbl" : "organ culture", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organ culture is the aseptic culture of complete living organs of animals and plants outside the body in a suitable culture medium. 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UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Bodily_fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000020", "lbl" : "blood material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of blood, a bodily fluid composed of blood plasma and blood cells suspended within the plasma that circulates around the organism's body. Blood performs may important functions including the supplying of oxygen and nutrients, removal of waste, circulation of white blood cells, detection of antibodes, coagulation, transportation of antibodies and the regulation of pH and body temperature.", "xrefs" : [ "https://en.wikipedia.org/wiki/Blood", "https://en.wikipedia.org/wiki/Body_fluid" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000021", "lbl" : "amniotic fluid material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of amniotic fluid, a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided.", "xrefs" : [ "URL:http://en.wikipedia.org/wiki/Amniotic_fluid" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000022", "lbl" : "excreta material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of excreta, bodily fluids consisting of matter which contains the waste products of biological processes, including urine or feces, discharged from an organism's body.", "xrefs" : [ "URL:http://medical-dictionary.thefreedictionary.com/excreta" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000023", "lbl" : "bile material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of bile, a bodily fluid consisting of a bitter, yellow or green alkaline fluid secreted by hepatocytes from the liver of most vertebrates. In many species, bile is stored in the gallbladder between meals and upon eating is discharged into the duodenum where the bile aids the process of digestion of lipids.", "xrefs" : [ "https://en.wikipedia.org/wiki/Bile" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "gall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000024", "lbl" : "aqueous humour material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of aqueous humour, a bodily fluid consisting of a thick watery substance that fills the space between the lens and the cornea.", "xrefs" : [ "https://en.wikipedia.org/wiki/Aqueous_humour" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Aqueous_humour" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000025", "lbl" : "sweat material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An excreta material which is composed primarily of sweat, an excreta consisting primarily of water as well as a smaller amount of sodium chloride that is excreted by the sweat glands in the skin of mammals.", "xrefs" : [ "http://en.wikipedia.org/wiki/Sweat" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000026", "lbl" : "chyme material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of chyme, a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Chyme" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chymus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000027", "lbl" : "blood plasma material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of blood plasma, a bodily fluid that comprises the liquid component of blood, in which the blood cells are suspended. It makes up about 55% of total blood volume.", "xrefs" : [ "https://en.wikipedia.org/wiki/Blood_plasma" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Blood_plasma" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000028", "lbl" : "ear wax material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of ear wax, a bodily fluid consisting of a yellowish, waxy substance secreted in the ear canal of humans and many other mammals. It plays an important role in the human ear canal, assisting in cleaning and lubrication, and also provides some protection from bacteria, fungi, and insects.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cerumen" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cerumen material" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Ear_wax" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000029", "lbl" : "cerebrospinal fluid material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of cerebrospinal fluid, a clear bodily fluid that occupies the subarachnoid space and the ventricular system around and inside the brain. CSF is a clear bodily fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cerebrospinal_fluid" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CSF material" }, { "pred" : "hasRelatedSynonym", "val" : "Liquor cerebrospinalis" } ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Cerebrospinal_fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000030", "lbl" : "chyle material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of chyle, a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats.", "xrefs" : [ "URL:http://wordnet.princeton.edu/perl/webwn?s=chyle", "https://en.wikipedia.org/wiki/Chyle" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Chyle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000031", "lbl" : "breast milk material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of breast milk, is a bodily fluid produced that is secreted from two milk-secreting glandular organs on a female's chest.", "xrefs" : [ "URL:http://www.fcs.uga.edu/ext/bbb/info/glossary.htm", "https://en.wikipedia.org/wiki/Breast_milk" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000032", "lbl" : "vitreous humor material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of vitreous humor, a bodily fluid consisting of a clear gel that fills the space between the lens and the retina of the eyeball of humans and other vertebrates.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vitreous_humour" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vitreous humour material" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000033", "lbl" : "pleural effusion material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of a pleural effusion, a bodily fluid that is produced in excess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. 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Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000035", "lbl" : "oronasal secretion material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of an oronasal secretion, a bodily fluid secreted from the body via the mouth or nose.", "xrefs" : [ "Gemina:ls" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000036", "lbl" : "saliva material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of saliva, a slightly alkaline secretion of water, mucin, protein, salts, and often a starch-splitting enzyme (as ptyalin) that is secreted into the mouth by salivary glands, lubricates ingested food, and often begins the breakdown of starches.", "xrefs" : [ "URL:http://medical.merriam-webster.com/medical/saliva" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000037", "lbl" : "sebum material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of sebum, an oily bodily fluid secreted from the sebaceous glads that is made of fat (lipids) and the debris of dead fat-producing cells. In the glands, sebum is produced within specialized cells and is released as these cells burst. Sebum acts to protect and waterproof hair and skin, and keep them from becoming dry, brittle and cracked. It can also inhibit the growth of microorganisms on skin.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sebaceous_gland" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000038", "lbl" : "pus material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of pus, a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pus" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000039", "lbl" : "synovial fluid material", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid material which is composed primarily of synovial fluid, a bodily fluid secreted by the synovial membrane into the joint cavity to form a thin layer at the surface of cartilage.", "xrefs" : [ "https://en.wikipedia.org/wiki/Synovial_fluid" ] }, "comments" : [ "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). 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coal-fired boiler that can be a wet sludge consisting of calcium sulfite or calcium sulfate or a dry powered material that is a mixture of sulfites and sulfates." }, "xrefs" : [ { "val" : "https://www.epa.gov/coalash/coal-ash-basics" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000132", "lbl" : "constructed monument", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which serves as a memorial.", "xrefs" : [ "https://www.wikidata.org/wiki/Q4989906" ] }, "comments" : [ "Monuments can commemorate people, animals, populations, events, or any other entity." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "monument" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-3138-4118" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://github.com/EnvironmentOntology/envo/issues/1213" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000133", "lbl" : "nuclear reactor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which is used to initiate and control a fission nuclear chain reaction or nuclear fusion reactions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Nuclear_reactor" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000134", "lbl" : "thermal nuclear reactor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nuclear reactor which uses a neutron moderator to slow neutrons until they approach the average kinetic energy of the surrounding particles.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermal-neutron_reactor" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "thermal reactor" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The term fast neutron may later be added to an ontology external to ENVO. 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They need far less fuel, and far less fission products build up as the fuel is used" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "non-power reactor" }, { "pred" : "hasExactSynonym", "val" : "nuclear test reactor" }, { "pred" : "hasExactSynonym", "val" : "test reactor" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000137", "lbl" : "nuclear power reactor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nuclear reactor which is used as a source of power.", "xrefs" : [ "https://en.wikipedia.org/wiki/Nuclear_reactor" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "power reactor" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000138", "lbl" : "mangrove biome soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is located in a mangrove biome.", "xrefs" : [ "https://doi.org/10.1093/treephys/tpq048" ] }, "comments" : [ "Mangrove soils are typically saline, anoxic, acidic and frequently waterlogged." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mangrove soil" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000140", "lbl" : "fluid environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is unable to resist shear forces and continuously deforms when subject to them.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fluid", "https://github.com/EnvironmentOntology/envo/issues/940" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000141", "lbl" : "refinery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which is used to process materials into forms that have increased value or utility in downstream processes." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000142", "lbl" : "petroleum oil refinery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A refinery which is capable of processing petroleum oil.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oil_refinery" ] }, "comments" : [ "Petroleum processing is an industrial process in which crude oil is transformed and refined into useful products such as petroleum naphtha, gasoline, diesel fuel, asphalt base, heating oil, kerosene, liquefied petroleum gas, jet fuel and fuel oils." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "oil refinery" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000143", "lbl" : "sugar refinery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A refinery which is capable of processing raw sugar. 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Natural-gas processing encompasses a range of industrial processes designed to purify raw natural gas by removing impurities, contaminants and higher molecular mass hydrocarbons to produce what is known as pipeline quality dry natural gas", "xrefs" : [ "https://en.wikipedia.org/wiki/Natural-gas_processing" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000146", "lbl" : "chemical engineering process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process which has the intention of producing, consuming, or transforming materials via the execution of chemical reactions.", "xrefs" : [ "https://en.wikipedia.org/wiki/Chemical_engineering", "https://www.britannica.com/technology/chemical-engineering" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "industrial chemical processing" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000147", "lbl" : "refinement process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned material transformation process which takes as input a material and removes impurities.", "xrefs" : [ "https://en.wikipedia.org/wiki/Refining" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "refining", "xrefs" : [ "https://en.wikipedia.org/wiki/Refining" ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000148", "lbl" : "Haber-Bosch process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chemical engineering process that produces ammonia en masse via artificial nitrogen fixation." }, "comments" : [ "This process is the primary synthetic means of producing fertilizer" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Haber process" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000149", "lbl" : "hydrogen production process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chemical engineering process which generates hydrogen gas.", "xrefs" : [ "https://en.wikipedia.org/wiki/Hydrogen_production" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000150", "lbl" : "uranium deposit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mineral deposit that contains uranium ore." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "uranium ore deposit" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000151", "lbl" : "natural nuclear fission reactor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A uranium deposit where self-sustaining nuclear chain reactions have occurred.", "xrefs" : [ "https://en.wikipedia.org/wiki/Natural_nuclear_fission_reactor" ] }, "comments" : [ "Oklo is the only known location for this in the world and consists of 16 sites at which self-sustaining nuclear fission reactions are thought to have taken place approximately 1.7 billion years ago, and ran for a few hundred thousand years, averaging probably less than 100 kW of thermal power during that time" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02000200", "lbl" : "has increased levels of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A has part relationship between a whole and a part, where the number of parts present in the whole is higher than in comparable entities." }, "comments" : [ "This relation is present in ENVO to support compositional classes such as \"X-enriched soil\". 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Do not use for annotation." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500015", "lbl" : "forest area expansion", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500016", "lbl" : "results in expansion of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A process, p, results in the expansion of a material entity, m, if the spatial extent of m is increased as a result of participating in p." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Afforestation results in the expansion of a forest." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500017", "lbl" : "obsolete anthropogenic reforestation", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:02500013" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500018", "lbl" : "algal bloom process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the populations in a community of algae in a marine or freshwater ecosystem undergo rapid growth, resulting in high concentrations of algal cells that occur only periodically and briefly in that ecosystem, relative to their concentrations through the majority of the planetary orbital period.", "xrefs" : [ "https://en.wikipedia.org/wiki/Algal_bloom" ] }, "comments" : [ "This class is under development. Note that cyanobacterial blooms are often confused with algal blooms. 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"lbl" : "algal production", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the algal cells constituting an algal bloom produce biomass from abiotic components during photosynthesis." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500024", "lbl" : "accumulation of toxins from algal bloom process", "type" : "CLASS", "meta" : { "comments" : [ "TODO; add axioms pointing to GO organismal process; Add axioms pointing to toxin role" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500025", "lbl" : "degradation of toxins from algal bloom process", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500026", "lbl" : "anthropogenic modulatory intervention process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which humans apply technology to alter the magnitude, duration, rate, or impact of an environmental process." }, "comments" : [ "Relabel the obo foundry unique label to be generic process" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500027", "lbl" : "anthropogenic environmental process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental process which is driven by the action of humans." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500028", "lbl" : "planetary erosion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.", "xrefs" : [ "https://en.wikipedia.org/wiki/Erosion" ] }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500029", "lbl" : "bedrock dissolution", "type" : "CLASS", "meta" : { "definition" : { "val" : "An erosional process in which bedrock is converted from its solid form into a solute by the action of some solvent." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500030", "lbl" : "biogeochemical process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which chemicals that are involved in natural ecosystem processes are transported or transformed, and which impact the activity of biological entities", "xrefs" : [ "https://en.wikipedia.org/wiki/Biogeochemistry" ] }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500031", "lbl" : "hydrological process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental process which has water - in any of its states - as a participant." }, "comments" : [ "This classes asserted subclasses will be moved away as it should be an inferred class." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500032", "lbl" : "planned revegetation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process during which human agents establish plant communities in ecosystems which have previously been, partially or wholly, stripped of existing plant communities." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500033", "lbl" : "evapotranspiration", "type" : "CLASS", "meta" : { "definition" : { "val" : "Evapotranspiration is the sum of evaporation and plant transpiration from the Earth's land and ocean surface to the atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Evapotranspiration" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500034", "lbl" : "evaporation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Evaporation is a form of vaporisation which occurs when a portion of the surface layer of a liquid in contact with a gaseous material, which is not saturated with the evaporating substance, vaporises.", "xrefs" : [ "https://en.wikipedia.org/wiki/Evaporation" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500035", "lbl" : "transpiration", "type" : "CLASS", "meta" : { "definition" : { "val" : "Transpiration is the process of water movement through a plant and its evaporation from aerial parts of that plant, such as from leaves but also from stems and flowers." }, "comments" : [ "Needs a process part \"water transport\" or similar and some link to plants to be complete." ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500036", "lbl" : "environmental pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system process that results in the introduction of contaminants into an environment.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pollution" ] }, "comments" : [ "Pollutants may be material or immaterial (e.g. heat energy)" ], "subsets" : [ "\"environmental_hazards\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pollution" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500037", "lbl" : "air pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pollution process during which particulates or other contaminants are released into a portion of air." }, "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500038", "lbl" : "soil pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pollution process during which contaminants are released into soil.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soil_pollution" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500039", "lbl" : "water pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pollution process during which contaminants are released into water." }, "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500040", "lbl" : "plastic pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pollution process during which plastic contaminants are released into an environmental material.", "xrefs" : [ "https://en.wikipedia.org/wiki/Plastic_pollution" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoPlastics\"", "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500041", "lbl" : "environmental monitoring", "type" : "CLASS", "meta" : { "definition" : { "val" : "An process in which environmental parameters and variables are continually assayed." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "monitoring" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500042", "lbl" : "pollution control", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process during which the amount of pollutants released into an environmental system is regulated." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "pollution prevention" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500043", "lbl" : "pollution monitoring", "type" : "CLASS", "meta" : { "definition" : { "val" : "A monitoring process that assays the level of environmental pollutants to determine the presence of effect of environmental pollution." }, "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_02500044", "lbl" : "urban pollution", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pollution process that results in increased levels of pollutants in an urban environment." }, "subsets" : [ "\"environmental_hazards\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000000", "lbl" : "neve", "type" : "CLASS", "meta" : { "definition" : { "val" : "Partially compacted granular snow, which has undergone several cycles of melting and refreezing while being compacted, usually found on the atmosphere-exposed surface of a glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/N%C3%A9v%C3%A9" ] }, "comments" : [ "Névé that survives a full season of ablation turns into firn." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "névé" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000002", "lbl" : "firn", "type" : "CLASS", "meta" : { "definition" : { "val" : "Granular snow which contains a proportion of fused granules formed through melting and re-thawing while being compacted by the weight of overlying material and which contains interconnected gaseous pores.", "xrefs" : [ "https://en.wikipedia.org/wiki/Firn" ] }, "comments" : [ "Firn derives from névé which has survived a full season of ablation and has undergone a metamorphic transition." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000003", "lbl" : "nivation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transformation process during which recently precipitated, powdery snow transitions into firn or névé through compaction and/or through cycles of freezing and thawing.", "xrefs" : [ "https://en.wikipedia.org/wiki/Nivation" ] }, "comments" : [ "Often, the weight of material deposited on top of powdery snow by, for example, mass wasting, can lead to nivation." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Link to mass wasting process." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000004", "lbl" : "glacial ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any water ice that is part of a glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Glacier" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "It is suggested that users complement this term with ice terms that are more descriptive of the ice itself, rather than its location/parthood." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000005", "lbl" : "erosionally enriched glacial ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Glacial ice which contains material liberated during a glacial erosion process.", "xrefs" : [ "https://www.asf.alaska.edu/blog/why-is-glacier-ice-blue/" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : 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internal light scattering and, given sufficient volume, a blue appearance.", "xrefs" : [ "https://en.wikipedia.org/wiki/Blue_ice_(glacial)", "https://en.wikipedia.org/wiki/Glacier" ] }, "comments" : [ "The blue 'appearance' is to be understood as that within the visual range of humans." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000008", "lbl" : "compaction process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical process during which atoms, molecules, or other consituents of a material entity are forced closer together.", "xrefs" : [ "https://en.wikipedia.org/wiki/Compaction" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000009", "lbl" : "material accumulation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the mass of one or more materials, present within a given site, increases." }, "comments" : [ "Experimental class for structural purposes not recommended for annotation. A material accumulation process ends a material transport process." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000010", "lbl" : "material transport process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which material is displaced from its original location and transported either to a new location or back to the original location." }, "comments" : [ "Experimental class for structural purposes not recommended for annotation." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000011", "lbl" : "ice gain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which the mass of an existing ice mass increases.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ablation_zone" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "accumulation of ice" }, { "pred" : "hasBroadSynonym", "val" : "ice accumulation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000012", "lbl" : "glacial transport process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which the snow and ice constituting a glacier, and anything contained within it, is transported down a slope by gravitation." }, "comments" : [ "This must be differentiated from small ice masses simply falling or moving down slopes. In ENVO, this is a subclass of advective transport process, however, this may not be universally accepted by some which strictly limit advection to fluids." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glacial flow" }, { "pred" : "hasExactSynonym", "val" : "glacial movement" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000013", "lbl" : "cirque glacier", "type" : "CLASS", "meta" : { "definition" : { "val" : "A small glacier contained within a cirque basin.", "xrefs" : [ "https://pubs.usgs.gov/of/2004/1216/text.html" ] }, "comments" : [ "The decreased size axiom is debatable" ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", 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"http://purl.obolibrary.org/obo/ENVO_03000016", "lbl" : "material decumulation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a mass composed of one or more environmental materials, present within a given site, decreases.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/decumulation" ] }, "comments" : [ "Experimental class for structural purposes not recommended for annotation." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000017", "lbl" : "glacial ice loss", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the mass of ice constituting a glacier decreases." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000018", "lbl" : "englacial stream", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stream which is primarily composed of meltwater and which flows within a glacier or ice sheet.", "xrefs" : [ "http://oxfordindex.oup.com/view/10.1093/oi/authority.20110803095752518" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000020", "lbl" : "aeolian transport process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process 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The materials have properties that their components do not - write full definitions including these where possible." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000025", "lbl" : "erosionally enriched ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water ice which contains material liberated during an erosion process.", "xrefs" : [ "https://www.asf.alaska.edu/blog/why-is-glacier-ice-blue/" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000027", "lbl" : "powdery snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "Uncompacted snow containing trapped atmospheric gases.", "xrefs" : [ "https://en.wikipedia.org/wiki/Types_of_snow", "https://nsidc.org/cryosphere/snow/science/characteristics.html" ] }, "comments" : [ "Described as having a fluffy appearance." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000029", "lbl" : "glacial ice gain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the mass of ice constituting a glacier increases." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000030", "lbl" : "glacial ice calving process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a part of a glacier breaks away from the main mass.", "xrefs" : [ "http://dx.doi.org/10.1038/nrmicro3522" ] }, "comments" : [ "Calving is usually caused by the expansion of glaciers." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glacier calving" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000031", "lbl" : "iceberg calving process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a part of a glacier breaks away from the main mass as an iceberg.", "xrefs" : [ "http://dx.doi.org/10.1038/nrmicro3522" ] }, "comments" : [ "Calving is usually caused by the expansion of glaciers." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "iceberg calving" }, { "pred" : "hasRelatedSynonym", "val" : "glacier calving" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000032", "lbl" : "calving of ice from an iceberg", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a part of an iceberg breaks away from the main mass.", "xrefs" : [ "http://dx.doi.org/10.1038/nrmicro3522" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "It would be ideal to express that the size of the icemass calved must be smaller than an iceberg." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000033", "lbl" : "marine sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment which has been transported through the marine water column, settling on the seafloor.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pelagic_sediment#_note-8" ] }, "comments" : [ "Particles of marine sediment are primarily generated by 1) processes in terrestrial systems and transported to the marine realm by the action of rivers or aeolian processes (amongst other routes) , 2) marine organisms, 3) chemical processes in seawater, or 4) cosmogeneous input." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "marine sediments" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000034", "lbl" : "shallow marine sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Marine sediment soured from either terrestrial systems, marine organisms, seawater and or cosmogeneous sources, which is transported through the marine water column, and accumulates within shallow regions of the oceanic basin close to continents, such as the continental shelf, or continental slope.", "xrefs" : [ "https://en.wikipedia.org/wiki/Continental_shelf", "https://en.wikipedia.org/wiki/Pelagic_sediment#_note-8" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "shallow marine sediments" }, { "pred" : "hasRelatedSynonym", "val" : "neritic marine sediment" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "In this definition we refer to sedimentation processes that occured above the shelf, however this should be relaxed to include the continental shelf and slope." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "output of sedimentation process which occured in neritic zone biome" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000035", "lbl" : "supraglacial lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water body which is located in a depression within the surface of a glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Supraglacial_lake" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "supraglacial lakes" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000036", "lbl" : "sedimentation in a water body", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which solid particles are pulled through a water body by gravitation or centrifugal force and which ends when they settle on a solid surface." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000037", "lbl" : "glacial ice ablation zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ablation zone which is part of a glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ablation" ] }, "comments" : [ "This class is more fully defined as: \"The part of the glacier, usually at lower elevations, where ablation exceeds accumulation in magnitude, that is, where the cumulative mass balance relative to the start of the mass-balance year is negative. Unless qualified, for example by giving a date within the year, references to the ablation zone refer to its extent at the end of the mass-balance year. The extent of the ablation zone can vary strongly from year to year. A synonym of ablation area.\" - GCW Terminology and Vocabulary Assessment Report 2018”, GCW report #23/2018" ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "area of glacial ablation" }, { "pred" : "hasExactSynonym", "val" : "glacial ablation area" }, { "pred" : "hasExactSynonym", "val" : "glacial ice ablation area" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/AblationZone" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://github.com/Vocamp/Virtual-Hackahon-on-Glacier-topic" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000038", "lbl" : "cryoconite deposit", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate environmental material which is composed primarily of dust, rock, and soot, as well as the microbial communities associated with these materials, deposited on an ice mass by an aeolian process.", "xrefs" : [ "http://www.nature.com/nrmicro/journal/v13/n11/full/nrmicro3522.html", "https://en.wikipedia.org/wiki/Cryoconite" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This actually is formed as a result of an accumulation process involving the constituents of cryoconite. When their semantics are more stable, we can axiomatise this fully." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0001-5812-6405" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000039", "lbl" : "cryoconite hole", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vertical thaw hole within an ice mass, formed as a result of ice melt associated with local temperature increases, due to increased absorption of solar radiation by cryoconite deposits.", "xrefs" : [ "http://glaciers.pdx.edu/Projects/Antarctica/CryoconiteHoles/Cryo_main.html" ] }, "comments" : [ "This class doesn't refer to the site but instead the depression or hole and therefore the adjacency to the cryoconite itself." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cryoconite holes" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The general semantics of depressions are still to be worked out see https://github.com/EnvironmentOntology/envo/issues/486" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000040", "lbl" : "melt pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water body which forms as a result of localised melting taking place on the surface of a glacier or a mass of sea ice and which is contained in the cavity formed by such melting.", "xrefs" : [ "https://en.wikipedia.org/wiki/Melt_pond" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "melt ponds" }, { "pred" : "hasExactSynonym", "val" : "meltpond" }, { "pred" : "hasExactSynonym", "val" : "meltponds" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0001-5812-6405" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000041", "lbl" : "brine channel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A channel through which brine flows.", "xrefs" : [ "https://askabiologist.asu.edu/brine-channels" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brine channels" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000042", "lbl" : "brine channel formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which brine droplets, trapped between ice crystals formed during seawater freezing, form brine channels.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary/term/frazil" ] }, "comments" : [ "This process may be considered a material accumulation process as it is the accumulation of brine droplets which form the channels." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000043", "lbl" : "material transformation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a portion of some environmental material is converted into a different material or a collection of materials." }, "comments" : [ "Experimental class for structural purposes not recommended for annotation. A material transformation process only refers to ENVO:environmental material classes (e.g. bulk and typically impure substances), rather than transformations converting a specific chemical into another." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A different material transformation process class (or similarly named class) pertaining to the conversion of a specific chemical into another belongs in CHEBI and or REX ontologies." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000044", "lbl" : "sea ice formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transformation process during which seawater freezes into sea ice.", "xrefs" : [ "http://www.waterencyclopedia.com/Re-St/Sea-Water-Freezing-of.html" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000045", "lbl" : "brine rejection from seawater", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transformation process during which brine is formed due to the expulsion of salt during frazil formation or a seawater freezing process.", "xrefs" : [ "https://en.wikipedia.org/wiki/Brine_rejection" ] }, "comments" : [ "Expelled salt accumulates in brine droplets, which remain in a liquid state due to their increased salinity." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000046", "lbl" : "frazil ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "New ice which is composed frazil which has congealed into a thin sheet.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary/term/frazil" ] }, "comments" : [ "Typically 3 to 4 millimeters in diameter. These new ice classes refer to both marine water and fresh water ice. If using this term for annotation, use it in conjunction with another envo term to express whether the ice is in a marine, freshwater, or other system." ], "subsets" : [ "\"envoPolar\"" ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/FrazilIce" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Needs to have axioms added pertaining to the semantics of colloids and suspensions once they have been resolved see: https://github.com/pato-ontology/pato/issues/91#issuecomment-290711238\n\nCurrently the new ice classes are not specific to sea water as they may form in non marine systems, but it would be good to confirm this especially for frazil ice." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000047", "lbl" : "frazil ice formation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A new ice formation process during which small, needle-like crystals consisting of nearly pure fresh water, form due to the freezing of open, turbulent, supercooled water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Frazil_ice#Formation", "https://nsidc.org/cryosphere/glossary/term/frazil" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000048", "lbl" : "thaw hole", "type" : "CLASS", "meta" : { "definition" : { "val" : "A channel which traverses an ice mass floating on a water body and bridges the atmosphere to the underlying water through its internal cavity.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary-terms/sea-ice" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "thaw holes" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000050", "lbl" : "atmosphere-exposed melt pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A melt pond which has a surface exposed to the atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Melt_pond" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0001-5812-6405" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000051", "lbl" : "ice-encased melt pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A melt pond which is completely encased in ice and thus not directly exposed to the atmosphere or underlying water.", "xrefs" : [ "https://phys.org/news/2017-01-arctic-ponds-meltwater-clogs-ice.html" ] }, "comments" : [ "In practice, there may be some openings which are small relative to the surface footprint of the meltpond." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0001-5812-6405" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000053", "lbl" : "intraglacial lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is comprised of meltwater located underneath or within a glacier.", "xrefs" : [ "https://www.researchgate.net/publication/258663667_Detection_of_a_subglacial_lake_in_Glacier_de_Tete_Rousse_Mont_Blanc_area_France", "https://www.researchgate.net/publication/313281555_Antarctic_subglacial_lakes_drain_through_sediment-floored_canals_Theory_and_model_testing_on_real_and_idealized_domains" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "intraglacial lakes" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add axioms to show that this is on the larger side in a size continuum between ice-encased meltponds and intraglacial lakes." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000054", "lbl" : "depositional process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which material entities are added to a landform or to a feature upon the landform." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000055", "lbl" : "desublimation of water vapour into ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "A desublimation process during which water vapour is frozen into water ice." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000056", "lbl" : "new ice formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice formation process during which water is frozen into a form of new ice such as frazil, grease ice, slush, or shuga.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary/term/new-ice" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Make this class the union of the following processes: frazil ice formation, grease ice formation process, slush formation process, and shuga formation process." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000057", "lbl" : "obsolete sea ice formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice formation process during which seawater is frozen into a sea ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#Formation" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "ENVO:03000044" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000058", "lbl" : "nilas formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea ice formation process during which new ice crystals freeze together, forming nilas, a thin, elastic, continuous, ice sheet of a transparent gray color.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice", "https://nsidc.org/cryosphere/glossary/term/nilas" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000059", "lbl" : "young ice formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea ice formation process during which water freezes to the bottom of an existing nilas ice floe creating a thicker ice floe known as young ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000060", "lbl" : "first year ice formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea ice formation process during which seawater freezes onto young ice during the cold season, forming first year ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice" ] }, "comments" : [ "First year ice that survives melting during spring and summer can transition to second year ice." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000061", "lbl" : "second year ice formation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea ice formation process during which seawater freezes onto first year ice during the cold season, forming second year sea ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice" ] }, "comments" : [ "Second year ice forms from first year ice which has previously survived one melt season." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000062", "lbl" : "multiyear ice formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea ice formation process during which seawater freezes into second year ice during the cold season, forming multiyear ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice" ] }, "comments" : [ "Multiyear ice forms from second year ice which has previously survived at least two melt seasons." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000063", "lbl" : "new ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water ice which is formed from freezing water and is suspended in a water body." }, "comments" : [ "sea ice types include frazil, grease ice, slush, and shuga. These new ice classes refer to both marine water and fresh water ice. If using this term for annotation, use it in conjunction with another envo term to express whether the ice is in a marine, freshwater, or other system." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Currently the new ice classes are not specific to sea water as they may form in non marine systems, but it would be good to confirm this especially for frazil ice." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000065", "lbl" : "ice floe", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which forms a cohesive and contiguous sheet of water ice, floating upon the surface of a water body.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary/term/ice-floe" ] }, "comments" : [ "Ice floes can exist in sea ice, in rivers or lakes. The WMO offers the following extent-based classification. Floe giant: Over 10 km across.\nFloe vast: 2-10 km across. Floe big: 500-2000 m across. Floe medium: 100-500 m across. Floe small: 20-100 m across. Ice cake: Less than 20 m across. Small ice cake: Less than 2 m across." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ice floes" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000066", "lbl" : "sea ice floe", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice floe which is formed from frozen sea water, and floats upon the surface of a marine water body.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary/term/ice-floe" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sea ice floes" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/Floe" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000067", "lbl" : "pancake ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea ice floe which has a rounded or circular shape and raised rims.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pancake_ice", "https://web.archive.org/web/20040712022508/http://ice-glaces.ec.gc.ca:80/App/WsvPageDsp.cfm?ID=10992&Lang=eng" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000068", "lbl" : "nilas", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea ice floe which is thin, elastic, continuous, and of a transparent gray color, which results from the freezing of new ice.", "xrefs" : [ "http://encyclopedia2.thefreedictionary.com/nilas", "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice", "https://nsidc.org/cryosphere/glossary/term/nilas" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000069", "lbl" : "young ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sea ice floe which is inflexible and thicker than nilas.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000071", "lbl" : "first year ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sea ice which has formed over a single freezing season.", "xrefs" : [ "http://nsidc.org/arcticseaicenews/tag/first-year-ice/", "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice", "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Sea ice develops from young ice; thickness from 0.3 to 2 meters (1 to 6.6 feet). Sea ice be subdivided into thin first-year ice (white ice), medium first-year ice, and thick first-year ice. First-year ice is distinguished from older ice primarily by having a higher salinity. Undeformed first-year ice differs from older ice in that it is smoother and lacks refrozen melt ponds. Characteristically level where undisturbed by pressure, but where ridges occur, they distinguished by being larger, more angular, and more porous than multiyear ridges." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "seasonal ice" } ], "xrefs" : [ { "val" : "http://sweetontology.net/realmCryo/SeasonalIce" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000072", "lbl" : "second year ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sea ice which is thicker than first year ice, and has survived a seasonal melting process.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000073", "lbl" : "multiyear ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sea ice which is thicker than second year ice, and has survived more than two seasonal melting process.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sea_ice#New_ice.2C_nilas_and_young_ice" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000074", "lbl" : "grease ice layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which consists of a thin aggregate of frazil ice crystals, which float upon the surface of a water body.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary/term/grease-ice" ] }, "comments" : [ "Within a marine system, grease ice makes the ocean surface resemble an oil slick." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000075", "lbl" : "shuga", "type" : "CLASS", "meta" : { "definition" : { "val" : "New ice, which is spongy, lumpy and opaque, and forms from water which freezes in an agitated water body.", "xrefs" : [ "http://encyclopedia2.thefreedictionary.com/shuga", "https://nsidc.org/cryosphere/glossary/term/shuga" ] }, "comments" : [ "These new ice classes refer to both marine water and fresh water ice. If using this term for annotation, use it in conjunction with another envo term to express whether the ice is in a marine, freshwater, or other system." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000076", "lbl" : "slush ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "A slurry of frazil, snow, and liquid water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Slush", "https://nsidc.org/cryosphere/glossary/term/slush" ] }, "comments" : [ "These new ice classes refer to both marine water and fresh water ice. If using this term for annotation, use it in conjunction with another envo term to express whether the ice is in a marine, freshwater, or other system." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000077", "lbl" : "slush ice layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which consists of slush ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Slush" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000078", "lbl" : "slush formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A new ice formation process in which slush ice is formed." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000079", "lbl" : "shuga formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A new ice formation process in which shuga is formed." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000082", "lbl" : "thermokarst lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater lake which fills a depression formed by the erosion of thermokarst caused by permafrost thaw.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermokarst" ] }, "comments" : [ "Continued thawing of the permafrost substrate can lead to the drainage and eventual disappearance of thermokarst lakes, leaving only the landform, thermokarst depression behind." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cave-in lake" }, { "pred" : "hasExactSynonym", "val" : "thaw lake" }, { "pred" : "hasExactSynonym", "val" : "thermokarst lakes" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000083", "lbl" : "methane-releasing thermokarst lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thermokarst lake through which methane gas released from thawing permafrost, or other methane stores, rises and escapes to the atmosphere.", "xrefs" : [ "http://www.sciencealert.com/photos-reveal-more-than-200-bright-blue-arctic-lakes-have-started-bubbling-with-methane-gas" ] }, "comments" : [ "On Earth, the bright blue appearance, in the light spectrum visible to humans, is due to increased abundances of microorganisms attracted to sulfur compounds associated with the methane release." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000084", "lbl" : "thermokarst depression", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geographic basin which is formed due to the erosion of thermokarst by meltwater released from thawing permafrost." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000085", "lbl" : "thermokarst", "type" : "CLASS", "meta" : { "definition" : { "val" : "An irregular land surface which consists of marshy hollows, hummocks, thermokarst depressions and thermokarst lakes formed from the erosion of ice-rich thawing permafrost areas.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermokarst" ] }, "comments" : [ "Thermokarst is usually found in Arctic or mountainous areas." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000086", "lbl" : "ice-bearing permafrost thawing process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A permafrost thawing process during which water-based ice or snow present in permafrost is converted into meltwater.", "xrefs" : [ "https://en.wikipedia.org/wiki/Permafrost" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000088", "lbl" : "methane-laden permafrost", "type" : "CLASS", "meta" : { "definition" : { "val" : "Permafrost which contains pockets of trapped methane gas.", "xrefs" : [ "http://www.nature.com/news/mysterious-siberian-crater-attributed-to-methane-1.15649", "http://www.sciencealert.com/7-000-huge-gas-bubbles-have-formed-under-siberia-and-could-explode-at-any-moment" ] }, "comments" : [ "Other hydrocarbon gasses such as carbon dioxide may also be present. These pockets can be sufficently large that the permafrost surface will undulate when pressure is applied." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bulgunyakh" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "It would probably be better to assert parthood between the permafrost and cavities filled with gas rather than the gases themselves." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000089", "lbl" : "permafrost crater derived from a methane explosion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A crater which is found in permafrost and formed as a result of an explosion fuelled by methane formerly contained in that permafrost.", "xrefs" : [ "http://www.nature.com/news/mysterious-siberian-crater-attributed-to-methane-1.15649", "http://www.sciencealert.com/7-000-huge-gas-bubbles-have-formed-under-siberia-and-could-explode-at-any-moment" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "gigantic funnel" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000090", "lbl" : "explosion process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which a material entity undergoes a rapid increase in volume, releasing gasses and various forms of energy, often including thermal, light and sound energy.", "xrefs" : [ "https://en.wikipedia.org/wiki/Explosion" ] }, "comments" : [ "Supersonic explosions are known as detonations and subsonic explosions as deflagrations." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "explosion" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000091", "lbl" : "permafrost methane explosion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An explosion during which methane-rich gas trapped in permafrost combusts.", "xrefs" : [ "http://www.nature.com/news/mysterious-siberian-crater-attributed-to-methane-1.15649", "http://www.sciencealert.com/7-000-huge-gas-bubbles-have-formed-under-siberia-and-could-explode-at-any-moment" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000092", "lbl" : "gas emission process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which a portion of gaseous environmental material is transported into the atmosphere.", "xrefs" : [ "https://en.wikipedia.org/wiki/Greenhouse_gas" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000093", "lbl" : "hydrocarbon gas emission process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gas emission process during which a portion of hydrocarbon gas is transported into the atmosphere.", "xrefs" : [ "https://www.epa.gov/ghgemissions/overview-greenhouse-gases" ] }, "comments" : [ "Some hydrocarbon gasses within the atmosphere contribute to the planetary green house gas effect by increasing absorption of solar energy." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000094", "lbl" : "methane gas emission process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydrocarbon gas emission process during which a portion of methane gas is transported into the atmosphere.", "xrefs" : [ "https://www.epa.gov/ghgemissions/overview-greenhouse-gases" ] }, "comments" : [ "Methane is emitted during the production and transport of coal, natural gas, and oil. Methane emissions also result from livestock and other agricultural practices and by the decay of organic waste in municipal solid waste landfills." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000095", "lbl" : "season generating process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process during which the intesity of stellar radiation received by a planet's surface varies in a cyclical regime due to the planet's orbital motion around the barycentre of a planetary system and/or the tilt of its rotational axis relative to its orbital plane." }, "comments" : [ "The seasons that are generated by this process are divisions of time between warm (maximal radiation exposure) and cold (minimum radiation exposure) extremes. Depending on the planet's makeup, the resulting seasonal dynamics may include ecological and meteorological cycles which may form the basis for further divisions of the cycle (e.g. rainy season, dry season, wildfire season)." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000096", "lbl" : "season", "type" : "CLASS", "meta" : { "definition" : { "val" : "A one-dimensional temporal region which is delimited by the occurrence of processes which serve as its delimiters." }, "subsets" : [ "\"envoAstro\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Season could be implemented as a subclass of one-dimensional temporal region, however, this will need further thought and discussion with BFO editors." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000097", "lbl" : "warm season", "type" : "CLASS", "meta" : { "definition" : { "val" : "A season during which the average temperature of a planetary part exceeds that of all other seasons it endures during a season generating process." }, "comments" : [ "The boundaries of seasons are typically fiat and should be defined on a data/information layer. This also pertains to the amount of time included when averaging measured values of qualities like temperature." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000098", "lbl" : "cold season", "type" : "CLASS", "meta" : { "definition" : { "val" : "A season during which the average temperature of a planetary part is below that of all other seasons it endures during a season generating process." }, "comments" : [ "The boundaries of seasons are typically fiat and should be defined on a data/information layer. This also pertains to the amount of time included when averaging measured values of qualities like temperature." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000099", "lbl" : "seasonal melting process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transformation process during which a material entity melts during a warm season." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000101", "lbl" : "solid-phase sintering", "type" : "CLASS", "meta" : { "definition" : { "val" : "A compaction process during which a material entity subjected to heat and/or pressure is compacted into a solid mass without undergoing melting.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sintering" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We should add the subclass axiom: 'has output' some ('environmental material' and 'has quality' some 'decreased porosity') once PATO:decreased porosity is available see ENVO issue #497\n\nAdditional axioms could also refer to object aggregates becoming objects within an environmental material." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000102", "lbl" : "glacial sintering", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sintering process during which snow is compacted into glacial ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Sintering" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Axioms will probably need to be updated if the axiomatisation of solid-phase sintering changes." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000103", "lbl" : "aeolian transport of snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "An aeolian transport process during which powdery snow is displaced and moved.", "xrefs" : [ "https://en.wikipedia.org/wiki/Snow#Drifting" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000104", "lbl" : "snow drift formation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An accumulation process during which a powdery snow carried on the wind settles on a solid surface, forming a mound." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "drifting of unsintered snow" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000105", "lbl" : "slab avalanche", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass wasting process during which slab snow rapidly moves down a sloping surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Snow#Avalanche" ] }, "comments" : [ "Slab avalanches account for most back-country fatalities." ], "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000106", "lbl" : "powdery snow avalanche", "type" : "CLASS", "meta" : { "definition" : { "val" : "An avalanche during which powdery snow rapidly flows down a sloping surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Snow#Avalanche" ] }, "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "powder snow avalanche" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000107", "lbl" : "wet snow avalanche", "type" : "CLASS", "meta" : { "definition" : { "val" : "An avalanche during which a suspension of water and snow flows down a sloping surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Snow#Avalanche" ] }, "comments" : [ "Wet snow avalanches travel at a lower velocity than other types of avalanches." ], "subsets" : [ "\"environmental_hazards\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000108", "lbl" : "slab snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "Snow which is cohesive, hard and overlies weaker snow.", "xrefs" : [ "http://www.fsavalanche.org/slab" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000110", "lbl" : "cryoform", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid astronomical body part which is primarily composed of a continuous mass of snow and/or ice." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Place holder class. Also the axiom should be changed to something along the lines of 'primairly composed of’ some ‘environmental material’ and ‘has quality’ frozen once PATO:frozen is imported." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000111", "lbl" : "snow mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass of snow." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "accumulation of snow" }, { "pred" : "hasBroadSynonym", "val" : "snow accumulation" } ], "xrefs" : [ { "val" : "http://sweetontology.net/phenCryo/Accumulation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000112", "lbl" : "snow drift", "type" : "CLASS", "meta" : { "definition" : { "val" : "An accumulation of powdery snow which was transported and deposited via a snow drifting process.", "xrefs" : [ "https://en.wikipedia.org/wiki/Snow#Drifting" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "snowdrift" }, { "pred" : "hasExactSynonym", "val" : "unsintered snow" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000113", "lbl" : "snow patch", "type" : "CLASS", "meta" : { "definition" : { "val" : "An accumulation of snow and firn which rests upon land." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "snowpatch" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000114", "lbl" : "seasonal snow patch", "type" : "CLASS", "meta" : { "definition" : { "val" : "A snow patch which forms during a cold season and melts away during the succeeding warm season." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "seasonal snowpatch" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Need to find a way of expression the fact that it 'ends during' some 'warm season' (but not with that axiom as that is for processes not a material entity)." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000115", "lbl" : "perennial snow patch", "type" : "CLASS", "meta" : { "definition" : { "val" : "A snow patch which persists through at least one seasonal cycle." }, "comments" : [ "A snow patch is defined as perennial if it survives two or more melt seasons." ], "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "perennial snowpatch" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Need to find a way of expression the fact that it has survived two or more melt seasons." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000116", "lbl" : "snowpack", "type" : "CLASS", "meta" : { "definition" : { "val" : "A snow mass which is large enough, and persists long enough, to undergo compaction under its own weight, leading to layer-like structural differentiation.", "xrefs" : [ "https://en.wikipedia.org/wiki/Snowpack" ] }, "comments" : [ "Snowpack is found in geographic regions experiencing cold weather for extended periods of time.", "The GCW analysis of multiple glossaries found eight definitions of snowpack, with many commonalities but also disagreements. Please see the corresponding report \"WMO GCW Nomenclature Assessment\" for more information." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "snow pack" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Given that SWEET considers the term to be a thickness and ENVO currently considers it a mass of snow. We have mismatch with the SWEET class, however, in ENVO we will take this term to be a mass of environmental material not a quality based on the harmonized GCW definition. See https://github.com/ESIPFed/sweet/issues/236#issue-805822974." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000117", "lbl" : "channel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structure which traverses a mass of one or more environmental materials, and encloses a roughly tubular site.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/channel" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Intended to be a top level class for wide variety of channel-like entities. It’s particulars may change once more subclasses are accumulated. This is distinct from 'channel of a watercourse', which is a depression." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000118", "lbl" : "atmosphere and water column exposed melt pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A melt pond which and is exposed to the atmosphere and to a lesser degree water underlying the ice mass which contains it." }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "open melt pond" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "It would be good to add an axiom such as 'continuous with' some 'water body'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0001-5812-6405" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000119", "lbl" : "water column exposed melt pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A melt pond which is formed close to that part of an ice mass which is in contact with some underlying water body, and which has channels connecting it to that water body." }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "It would be good to add an axiom such as 'continuous with' some 'water body'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0001-5812-6405" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000120", "lbl" : "subglacial lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is situated beneath a glacier.", "xrefs" : [ "https://en.wikipedia.org/wiki/Subglacial_lake" ] }, "subsets" : [ "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "subglacial lakes" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000121", "lbl" : "erosion through nivation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An erosion process during which rock or soil is removed or degraded due to alternative thawing and freezing of meltwater beneath and at the margins of snowbanks.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/nivation" ] }, "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000122", "lbl" : "planned burn", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fire which is planned and executed deliberately under human supervision.", "xrefs" : [ "https://en.wikipedia.org/wiki/Controlled_burn" ] }, "comments" : [ "Fire-stick farming was the practice of Indigenous Australians who regularly used fire to burn vegetation to facilitate hunting and to change the composition of plant and animal species in an area. Aboriginal people may have been able to aim the burning of the scrub to avoid growing areas. There may have been a ritual taboo against burning certain areas of jungle. This type of farming directly increased the food supply for Aboriginal people by promoting the growth of bush potatoes and other edible ground-level plants.", "Planned burns are conducted for a variety of reasons such combating or preventing uncontrolled wildfires in order by reducing the fuel load in a wooded or similar areas with combustible vegetation. Alternatively planned burns, such as those practiced by various indigenous people, are conducted for a variety of reasons including facilitating agriculture, hunting and or traveling. As well as managing populations of parasitic species or game animals by decreasing or increasing the size of their habitats respectively." ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "fire-stick farming" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-3884-3420" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000123", "lbl" : "concentration of nitrate and nitrite in liquid water", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of nitrate and nitrite when measured in liquid water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "liquid water nitrate and nitrite concentration" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000127", "lbl" : "acid rainfall", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water-based rainfall process during which water droplets with increased acidity fall towards a planetary surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Acid_rain" ] }, "comments" : [ "On Earth, the acidity of raindrops is typically increased through interactions of water molecules with sulfur dioxide or nitrogen oxide, released into the atmosphere by natural or anthropogenic processes." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "acid rain" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-3884-3420" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000128", "lbl" : "acidic water-based rain", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water-based rain which has increased acidity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Acid_rain" ] }, "comments" : [ "On Earth, the acidity of raindrops is typically increased through interactions of water molecules with sulfur dioxide or nitrogen oxide, released into the atmosphere by natural or anthropogenic processes." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "acid rain" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-3884-3420" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000129", "lbl" : "monsoon season", "type" : "CLASS", "meta" : { "definition" : { "val" : "A season during which changes in atmospheric circulation associated with the asymmetric heating of land and sea cause moisture to be brought inland by monsoon winds, leading to increased rainfall as moisture-laden air rises and cools over land.", "xrefs" : [ "https://en.wikipedia.org/wiki/Monsoon" ] }, "comments" : [ "On Earth, monsoon seasons typically occur in West Africa, Asia and Australia." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Pending decision of placement of season as one-dimensional temporal region, we should add axioms cross linking to monsoon winds, as well as increased prevalence of water-based rainfall." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-3884-3420" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000130", "lbl" : "monsoon wind", "type" : "CLASS", "meta" : { "definition" : { "val" : "An atmospheric wind during which air masses over an ocean flow towards a land mass, driven by disequilibria between land and ocean surface temperatures.", "xrefs" : [ "https://en.wikipedia.org/wiki/Monsoon", "https://www.merriam-webster.com/dictionary/monsoon" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-3884-3420" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000131", "lbl" : "grass fire", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fire which occurs in a grassland, combusting biomass stored in grasses as its primary fuel.", "xrefs" : [ "https://www.publish.csiro.au/book/5971/" ] }, "subsets" : [ "\"environmental_hazards\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-3884-3420" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000132", "lbl" : "firebreak", "type" : "CLASS", "meta" : { "definition" : { "val" : "A woodland clearing which is large enough to starve land fires of fuel, impeding their progress through wooded areas.", "xrefs" : [ "https://en.wikipedia.org/wiki/Firebreak" ] }, "comments" : [ "Firebreaks are typically elongated in shape and may be artificially constructed or result from a naturally occurring obstacle to a fire. Such obstacles include naturally occurring astronomical body parts such as a as rivers, lakes or canyons, or alternatively anthropologically constructed features such as roads." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fire break" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "https://orcid.org/0000-0002-3884-3420" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000133", "lbl" : "agricultural potting mixture", "type" : "CLASS", "meta" : { "definition" : { "val" : "An agricultural environmental material which 1) is composed of a mixture of materials such as peat, composted bark, sand, perlite, or compost, and 2) serves as a medium in which to grow plants.", "xrefs" : [ "https://en.wikipedia.org/wiki/Potting_soil" ] }, "comments" : [ "Potting soil can be composed of a wide range of materials in varying ratios, often containing little or no actual soil." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "potting soil" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000134", "lbl" : "WMO blizzard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blizzard which 1) lasts at least 3 hours, 2) combines below freezing temperatures and very strong wind, laden with blowing snow.", "xrefs" : [ "https://www.wmo.int/pages/prog/lsp/meteoterm_wmo_en.html" ] }, "comments" : [ "Blizzards typically reduces visibility to less than 1 km" ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-10-14T20:13:10.917Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000135", "lbl" : "NSIDC blizzard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blizzard which has 1) winds of 35 miles per hour (approximately 56 kilometers per hour), 2) lasts for a period of at least three hours, and 3) occurs in extremely cold temperatures.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary", "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The original definition has been edited to conform to ENVO's textual pattern. Subjective/observer-based differentia (e.g. visibility) have been moved to comments. The NSIDC definition notes that blizzards involve snow reducing visibility to less than one-quarter mile (0.4 km) and are associated with dangerous blizzard conditions." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-10-14T20:13:10.917Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000136", "lbl" : "winter blizzard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blizzard which occurs in winter.", "xrefs" : [ "http://www.physicalgeography.net/glossary.html" ] }, "comments" : [ "The original definition has been edited to conform to ENVO's textual pattern. Subjective/observer-based differentia (e.g. visibility) have been moved to comments." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-10-14T20:13:10.917Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000137", "lbl" : "freezing fog", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fog the droplets of which freeze upon contact with exposed objects, forming a coating of rime or glaze.", "xrefs" : [ "http://glossary.ametsoc.org/wiki/Main_Page", "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Freezing fog forms when the air temperature is below freezing and the water droplets in the fog become supercooled." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-10-14T20:13:10.917Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000138", "lbl" : "particle of snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A particle which is 1) primarily compposed of water ice, 2) on the order of 1 milimeter or less, 3) has a white and opaque appearance, and 4) is formed as a result of water droplets freezing during precipitation.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Precipitation in the form of very small, white opaque particles of ice; the solid equivalent of drizzle. They resemble snow pellets in external appearance, but are more flattened and elongated, and generally have diameters of less than 1 mm; they neither shatter nor bounce when they hit a hard surface. Descriptions of the physical structure of snow grains vary widely and include very fine, simple ice crystals; tiny, complex snow crystals; small, compact bundles of rime; and particles with a rime core and a fine glaze coating. It is agreed that snow grains usually fall in very small quantities, mostly from stratus clouds or from fog, and never in the form of a shower." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "grain of snow" }, { "pred" : "hasExactSynonym", "val" : "granule of snow" }, { "pred" : "hasExactSynonym", "val" : "snow grain" }, { "pred" : "hasExactSynonym", "val" : "snow granule" }, { "pred" : "hasExactSynonym", "val" : "snow particle" }, { "pred" : "hasRelatedSynonym", "val" : "granular snow" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Need to add a computable size constraint." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-11-18T20:22:03.870Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000139", "lbl" : "ice fog", "type" : "CLASS", "meta" : { "definition" : { "val" : "Fog which is composed of particles of ice.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The suspended particles may be partly ice crystals 20 to 100 micron in diameter, but chiefly, especially when dense, droxtals 12-20 micron in diameter. Ice fog is formed by direct freezing of supercooled water droplets with little growth directly from the vapor. It occurs at very low temperatures, and usually in clear, calm weather in high latitudes. The sun is usually visible and may cause halo phenomena or luminous pillars. Ice fog is rare at temperatures warmer than -30 °C, and increases in frequency with decreasing temperature until it is almost always present at air temperatures of -45 °C in the vicinity of a source of water vapor. Such sources are the open water of fast-flowing streams or of the sea, herds of animals, volcanoes, and especially products of combustion for heating or propulsion. At temperatures warmer than -30 °C, these sources can cause steam fog of liquid water droplets, which may turn into ice fog when cooled." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "frozen fog" }, { "pred" : "hasExactSynonym", "val" : "ice-crystal fog" }, { "pred" : "hasExactSynonym", "val" : "pogonip" }, { "pred" : "hasRelatedSynonym", "val" : "air hoar" }, { "pred" : "hasRelatedSynonym", "val" : "frost flakes" }, { "pred" : "hasRelatedSynonym", "val" : "frost fog" }, { "pred" : "hasRelatedSynonym", "val" : "rime fog" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "In future will add computable renditions of size and temperature constraints. The synonyms of this class can be quite confusing, as they reference entities like frost (which requires a surface for deposition). Might need to add a new droxtal class see https://glossary.ametsoc.org/wiki/Droxtal." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-11-18T20:48:37.965Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000140", "lbl" : "tundra climate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A climate which 1) has a mean temperature for the warmest month of less than 10°C (50°F), but higher than 0°C (32°F), 2) is not conducive to a permanent surficial cover of snow or ice, and 3) supports a tundra ecosystem.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "In W. Köppen's 1936 climatic classification it is one of the polar climates, defined as having a mean temperature for the warmest month of less than 10°C (50°F) (in contrast to snow forest and temperate rainy climates) but higher than 0°C (32°F) (which is the limit of perpetual frost climate). Tundra is designated ET. Tundra climate appears as a temperature province in C. W. Thornthwaite's 1931 classification." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Might need to add the Köppen climate classifications. Climate conditions might be obsoleted. Warmest month and mean temperature are operationally defined, will need to sort these out. Focusing on physical differential like surface cover would be preferable, (but maybe not practical)." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-11-18T21:04:41.822Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000141", "lbl" : "snow layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cryospheric layer which is primarily composed of snow.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Follows from the GCW's snow cover definition 2: In general, a layer of snow on the ground surface. Compare snowfield, snowpack.\n\nGiven the SWEET terms location in its heirarchy I think only the 3rd definition is meant." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "snow cover" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000142", "lbl" : "snow water equivalent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depth which inheres in a layer of liquid water derived from the complete melting a mass of snow contained in an area.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The quantification of snow water equivalent can be done through direct melting of snow in a defined area, or through the derivation of such a value from the processing of remote sensing data of, e.g., snow density and coverage." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "In an area of melted snow it's the thickness of acumulated water. This involves a processing step for measurement, may be more appropriate in OBI (if it extends beyond biomedicine)." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000143", "lbl" : "cryosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "An astronomical body part which is composed primarily of environmental materials in their frozen form.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The term generally refers to the portions of the Earth where water is in solid form, including snow cover, floating ice, glaciers, ice caps, ice sheets, seasonally frozen ground and perennially frozen ground (permafrost). The Cryosphere may be divided into the cryoatmosphere, the cryohydrosphere (snow cover, glaciers, and river, lake and sea Ice) and the cryolithosphere (perennially and seasonally cryotic ground, rock glacier). Some definitions consider the cryosphere to include any area of Earth which is sufficiently cold for pure water to freeze for at least a part of each year. It should be noted that \"Some authorities exclude the earth's atmosphere from the Earth's Cryosphere; others restrict the term Cryosphere to the regions of the earth's crust where Permafrost exists.\"\n\nDefinitions of Cryosphere come from several glossaries including:\n- PhysicalGeography.net http://physicalgeography.net/\n- van Everdingen, Robert, ed., 2005 (1998 revised May 2005). Multi-language glossary of permafrost and related ground-ice terms. Boulder, CO: National Snow and Ice Data Center/World Data Center for Glaciology. [https://globalcryospherewatch.org/reference/glossary_docs/Glossary_of_Permafrost_and_Ground-Ice_IPA_2005.pdf]\n- American Meteorological Society, 2015. Glossary of Meteorology [online], Available at: http://glossary.ametsoc.org/wiki/Main_Page. [Accessed 27/01/2017].\n- EU Climate-ADAPT (The European Climate Adaptation Platform), no date, Glossary, Available from: http://climate-adapt.eea.europa.eu/glossary\n- IPCC, 2014: Annex II: Glossary [Agard, J., Schipper, E. L. F., (ed.)]. In: Climate Change 2014: Impacts, Adaptation, and Vulnerability. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Birkmann, J., Campos, M., Dubeux, C., Nojiri, Y., Olsson, L., Osman-Elasha, B., Pelling, M., Prather, M. J., Rivera-Ferre M. G., Ruppel, O. C., Sallenger, A., Smith, K. R., St. Clair, A. L.,]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA. [Link]\n- NSIDC, The National Snow and Ice Data Center glossary is available at https://nsidc.org/cryosphere/glossary, Last accessed [26/01/2016].\n- Trombotto, D., P. Wainstein & L. Arenson, 2014, Guía Terminológica de la Geocriología Sudamericana” / “Terminological Guide of the South American Geocryology, 1a ed. 128 pp. [Link]\n- UNESCO-WMO, 2012, International Glossary of Hydrology, 3rd edition, WMO-No. 385. [Link]" ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "For the moment the definition links to liquid water but in the future we might need to link to other materials for other planets, e.g., Mars. Need to make this planet agnostic. Might want to not have the definition link to years as some astronomical body parts might not be in systems with years.\n\nNote that in a strict sense, rocks are also frozen but in a practical sense we use terms like \"solidified\". This maybe something to revist if we add more astrogelogical content." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000144", "lbl" : "planetary cryosphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cryosphere which is part of a planet." }, "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Replacement for ENVO:01000818" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000145", "lbl" : "snow-covered land", "type" : "CLASS", "meta" : { "definition" : { "val" : "Land which is covered or partially covered by snow.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The threshold at which land is considered covered by snow varies. Please define such thresholds on the instance level, or request a subclass of this class if a threshold you know of is used by a large community of practice or in an official definition. This is one of three classes representing the idea of snow cover in the GCW glossary in addition to depth of snow and snow cover. In the GCW this refers to 1. The areal extent of snow-covered ground, usually expressed as percent of total area in a given region." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "area of snow cover" }, { "pred" : "hasExactSynonym", "val" : "land covered by snow" }, { "pred" : "hasExactSynonym", "val" : "snow covered land" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000146", "lbl" : "water cooling", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transport process during which liquid water is circulated in the vicinity of a heat source in order to absorb thermal energy and transport it away form that source." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-9625-1899" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-4366-3088" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03000147", "lbl" : "thickness of snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "The thickness of some snow." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "snow thickness" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400001", "lbl" : "area of alpine tundra", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of tundra which is present in a region subject to alpine conditions.", "xrefs" : [ "https://orcid.org/0000-0002-4366-3088" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400002", "lbl" : "area of polar tundra", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area of tundra which is present in a region subject to polar conditions." } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400003", "lbl" : "snow cover", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area density which inheres in snow distributed over an area of a landmass or other substrate." }, "comments" : [ "1. The areal extent of snow-covered ground, usually expressed as percent of total area in a given region. 2. In general, a layer of snow on the ground surface. Compare snowfield, snowpack. 3. The depth of snow on the ground, usually expressed in inches or centimeters." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The superclass \"area density\" is somewhat awkward and this positioning requires further discussion." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400004", "lbl" : "heavy snowfall", "type" : "CLASS", "meta" : { "definition" : { "val" : "Snowfall which has an increased rate.", "xrefs" : [ "https://w1.weather.gov/glossary/index.php?word=HEAVY+SNOW" ] }, "comments" : [ "This generally means snowfall accumulating to 4 inches or more in depth in 12 hours or less; or snowfall accumulating to 6 inches or more in depth in 24 hours or less. In forecasts, snowfall amounts are expressed as a range of values, e.g., \"8 to 12 inches.\" However, in heavy snow situations where there is considerable uncertainty concerning the range of values, more appropriate phrases are used, such as \"...up to 12 inches...\" or alternatively \"...8 inches or more...\"." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "intense snowfall" }, { "pred" : "hasRelatedSynonym", "val" : "heavy snow" }, { "pred" : "hasRelatedSynonym", "val" : "intense snow" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400005", "lbl" : "ice pellet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which is 1) transparent or translucent, 2) rounded, spherically, or cylindrically shaped, and 3) less than 5 milimetres in diameter.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "They may be spherical, irregular, or (rarely) conical in shape. Ice pellets usually bounce when hitting hard ground and make a sound upon impact. They can fall as continuous precipitation or in showers. Now internationally recognized, ice pellets includes two basically different types of precipitation, known in the United States as 1) sleet or grains of ice, generally transparent, globular, solid grains of ice that have formed from the freezing of raindrops or the refreezing of largely melted snowflakes when falling through a below-freezing layer of air near the earth's surface; and 2) small hail, generally translucent particles, consisting of snow pellets encased in a thin layer of ice. The ice layer may form either by the accretion of droplets upon the snow pellet or by the melting and refreezing of the surface of the snow pellet." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "grain of ice" }, { "pred" : "hasRelatedSynonym", "val" : "ice grain" }, { "pred" : "hasRelatedSynonym", "val" : "sleet" }, { "pred" : "hasRelatedSynonym", "val" : "small hail" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400006", "lbl" : "lake-effect snowfall", "type" : "CLASS", "meta" : { "definition" : { "val" : "Snowfall which 1) is localized, 2) is convective, and 3) occurs as a result of a cold, dry air mass absorbing heat and moisture as it flows over a lake with warmer waters.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "The formation of lake-effect snow depends on multiple factors, effecting the thresholds of temperature needed in the air and water masses. In the United States this phenomenon is most noted along the south and east shores of the Great Lakes during arctic cold-air outbreaks." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lake effect snow" }, { "pred" : "hasExactSynonym", "val" : "lake-effect snow" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The factors involved in this process are complex, and expert input is needed to refine this. Similar input is needed to create bay-effect and ocean-effect snow. @Brandon: add axioms to relate this concept to proximity to a `lake`; perhaps using colocation and spatial region?" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400007", "lbl" : "lake-effect snow storm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A snowstorm during which intense lake-effect snowfall occurs.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Please see \"lake-effect snowfall\" for further definition. A lake effect snowstorm is a snowstorm occurring near or downwind from the shore of a lake resulting from the warming (destabilization) and moistening of relatively cold air during passage over a warm body of water." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lake effect snow storm" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Add axioms to nest the lake-effect snowfall process in this one" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400008", "lbl" : "lambing storm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A snowfall which occurs during springtime and is of low intensity.", "xrefs" : [ "https://glossary.ametsoc.org/wiki/Lambing_storm" ] }, "comments" : [ "This term is primarily used in England and refers to snowfall in lambing season. It is referred to as a \"storm\" as it may adversly affect or kill newborn lambs." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lamb storm" }, { "pred" : "hasExactSynonym", "val" : "lamb-blasts" }, { "pred" : "hasExactSynonym", "val" : "lamb-showers" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Link this to spring once seasons are added to ENVO" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Strictly, there is no increased rate of snowfall here, but of lamb death. We're not likely to add \"lamb-death storm\" to ENVO. Maybe AGRO would." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400009", "lbl" : "falling sleet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object aggregate which is primarily composed of particles of water in liquid, frozen, or partially frozen states.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "WMO METEOTERM notes that other regions define this as a sudden brief rainfall with wind and hail but they don't state what those other regions are.\n\nWMO, METEOTERM is available at https://www.wmo.int/pages/prog/lsp/meteoterm_wmo_en.html, Last accessed [26/01/2016]." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sleet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400010", "lbl" : "freezing rain", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water-based rain which is composed of supercooled water droplets, which freeze on contact with surfaces.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "There are communities which consider rain with droplets above the liquid-solid phase transition point of water to be freezing rain should they freeze on contact with a supercooled surface." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Could make a freezing rain process class to mirror this in the process hierarchy as subclass to hydrological precipitation process." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400011", "lbl" : "hail", "type" : "CLASS", "meta" : { "definition" : { "val" : "Precipitation which is composed primarily of hail stones.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "Individual units of hail are called hailstones. Thunderstorms that are characterized by strong updrafts, large liquid water contents, large cloud-drop sizes, and great vertical height are favorable to hail formation. The destructive effects of hailstorms upon plant and animal life, buildings and property, and aircraft in flight render them a prime object of weather modification studies. In aviation weather observations, hail is encoded A. Smaller particles of similar origin, formerly called small hail, may be classed as either ice pellets or snow pellets." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400012", "lbl" : "hail stone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which 1) occurs in a ball-shape or irregular lump, 2) has a minimum diameter of 5 millimeters (or 0.2 inches), and 3) is formed within convective clouds." }, "comments" : [ "Nearly always formed within cumulonimbus clouds. Typically have a diameter ranging between 5 and 50 millimeters." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400013", "lbl" : "falling snow", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object aggregate which is composed primarily of snow falling through an atmosphere." }, "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "snowfall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400014", "lbl" : "precipitation of sleet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydrological precipitation process during which water falls in both liquid and frozen form.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "comments" : [ "In nature, water-based precipitation will likely always have some liquid and solid/frozen components (especially in higher atmospheric layers) - sleet is generally composed of these phases in comparable proportions. Note that formation processes differ between sleet and other frozen precipitation. For example, hail, being larger in size than sleet or ice pellets, is formed by the accumulation of layers of freezing water in the clouds. Sleet, however, is formed due to temperature difference in the atmosphere" ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sleet" }, { "pred" : "hasExactSynonym", "val" : "sleet fall" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400015", "lbl" : "sleet pellet", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ice mass which is primarily composed of frozen or mostly frozen raindrops or refrozen partially melted snowflakes.", "xrefs" : [ "https://w1.weather.gov/glossary/index.php?word=sleet" ] }, "comments" : [ "The size of sleet pellets are considered to be, at most, the size of a pea, although thresholds vary across cultures." ], "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "sleet" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400016", "lbl" : "area of ice cover", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental zone which is covered or partially covered by ice.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736" ] }, "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03400017", "lbl" : "depth of water ice", "type" : "CLASS", "meta" : { "definition" : { "val" : "The depth of some water ice." }, "subsets" : [ "\"envoCryo\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-0337-8610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2282-7215" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-0632-7576" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0003-4808-4736" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-14T18:57:18.275Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03500001", "lbl" : "playground", "type" : "CLASS", "meta" : { "definition" : { "val" : "A park which has been designed for the recreation of children." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-11-05T15:57:48Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03500002", "lbl" : "public park", "type" : "CLASS", "meta" : { "definition" : { "val" : "A park which is owned by a governmental or state entity and which is accessible by its citizenry (i.e. the public)." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-11-05T15:59:13Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03500003", "lbl" : "public sports field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sports facility which has been constructed for sports that require large outdoor spaces and is owned by a governmental or state entity and which is accessible by its citizenry (i.e. the public)." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-11-05T16:00:15Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03500004", "lbl" : "bike path", "type" : "CLASS", "meta" : { "definition" : { "val" : "A constructed pavement which is intended for bicycle traffic" }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-11-05T16:01:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03500005", "lbl" : "anthropogenic litter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity which has been discarded outside waste management systems by humans or their technologies." }, "comments" : [ "Very large objects that are discarded are typically considered \"debris\", but this term is loosely defined and there are no standard size classifications which can be used to distinguish debris from litter." ], "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "basura antropogénica" }, { "pred" : "hasBroadSynonym", "val" : "litter" }, { "pred" : "hasBroadSynonym", "val" : "rifiuti antropogenici" }, { "pred" : "hasExactSynonym", "val" : "anthropogener Abfall" }, { "pred" : "hasExactSynonym", "val" : "menschengemachter Abfall" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-2908-3327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2019-11-05T16:02:41Z" } ] } }, { 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: { "val" : "A self-service shop offering a wide variety of food, beverages and household products, organized into sections.", "xrefs" : [ "https://en.wikipedia.org/wiki/Supermarket" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501291", "lbl" : "broiler", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an oven or a small stove used to broil food.", "xrefs" : [ "https://en.wiktionary.org/wiki/broiler" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "grill" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501292", "lbl" : "tote bin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portable, box-type industrial storage product used for the storage and handling or parts and materials, that may collapse to conserve space when not in use.", "xrefs" : [ "https://www.globalspec.com/learnmore/material_handling_packaging_equipment/material_handling_equipment/totes_bins" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "storage bin" }, { "pred" : "hasBroadSynonym", "val" : "storage box" }, { "pred" : "hasBroadSynonym", "val" : "tote" }, { "pred" : "hasExactSynonym", "val" : "tote box" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501293", "lbl" : "tote bag", "type" : "CLASS", "meta" : { "definition" : { "val" : "A large bag with parallel handles that emerge from the sides of its pouch.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tote_bag" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "bag" }, { "pred" : "hasBroadSynonym", "val" : "tote" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501294", "lbl" : "preprocessing plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A factory where raw or preprocessed materials are transformed into finished parts or products." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "preprocessing factory" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501295", "lbl" : "processing plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A factory where raw materials are treated or prepared for final processing.", "xrefs" : [ "https://www.collinsdictionary.com/dictionary/english/processing-plant" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "processing factory" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501296", "lbl" : "cheese processing plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A factory for processing, packaging, labelling, handling, and storing cheese." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cheese factory" }, { "pred" : "hasExactSynonym", "val" : "cheese plant" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501297", "lbl" : "meat processing plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A processing plant for slaughtering, processing, packaging, labelling, handling, and storing of food animal carcasses, parts of carcasses, and meat products.", "xrefs" : [ "https://www.ontario.ca/document/meat-plant-guidelines/part-6-operation-meat-plants" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "meat factory" }, { "pred" : "hasExactSynonym", "val" : "meat plant" }, { "pred" : "hasNarrowSynonym", "val" : "butchery" }, { "pred" : "hasNarrowSynonym", "val" : "freezing works" }, { "pred" : "hasNarrowSynonym", "val" : "meat packaging plant" }, { "pred" : "hasNarrowSynonym", "val" : "packinghouse" }, { "pred" : "hasNarrowSynonym", "val" : "slaughter plant" }, { "pred" : "hasNarrowSynonym", "val" : "slaughterhouse" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501298", "lbl" : "stable bandage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bandage wrap used on the lower legs of a horse.", "xrefs" : [ "https://en.wikipedia.org/wiki/Stable_bandage" ] }, "comments" : [ "A stable bandage runs from just below the knee or hock, to the bottom of the fetlock joint, and protects the cannon bone, tendons of the lower leg, and fetlock joint." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "stable bandage" }, { "pred" : "hasBroadSynonym", "val" : "standing bandage" }, { "pred" : "hasExactSynonym", "val" : "standing wrap" }, { "pred" : "hasNarrowSynonym", "val" : "stable gauze" }, { "pred" : "hasNarrowSynonym", "val" : "stall gauze" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501299", "lbl" : "charcuterie shop", "type" : "CLASS", "meta" : { "definition" : { "val" : "A delicatessen which prepares and sells preserved meat products." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "charcuterie" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501300", "lbl" : "manure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material consisting of organic matter from plants and/or animals that is used in agriculture as fertilizer.", "xrefs" : [ "https://en.wikipedia.org/wiki/Manure" ] }, "comments" : [ "Most manure consists of animal feces; other sources include compost and green manure." ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "animal manure" }, { "pred" : "hasNarrowSynonym", "val" : "compost" }, { "pred" : "hasNarrowSynonym", "val" : "farm slurry" }, { "pred" : "hasNarrowSynonym", "val" : "green manure" }, { "pred" : "hasNarrowSynonym", "val" : "liquid manure" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501301", "lbl" : "baseboard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building part consisting of a board covering the joint between the lowest part of an interior wall surface and the floor.", "xrefs" : [ "https://en.wikipedia.org/wiki/Baseboard" ] }, "comments" : [ "Its purpose is to cover the joint between the wall surface and the floor." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501302", "lbl" : "cork", "type" : "CLASS", "meta" : { "definition" : { "val" : "Plant matter consisting of an impermeable buoyant material, the phellem layer of bark tissue.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cork_(material)" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-5275-8866" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501303", "lbl" : "natural-based polymer", "type" : "CLASS", "meta" : { "definition" : { "val" : "Macromolecules that are obtained naturally from plants or animals.", "xrefs" : [ "https://www.sciencedirect.com/topics/materials-science/natural-polymer" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501304", "lbl" : "cellophane", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thin, transparent sheet made of regenerated cellulose.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cellophane" ] }, "comments" : [ "Cellophane is used for food packaging." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "Plastic Wrap" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501305", "lbl" : "pliofilm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Synthetic plastic which is composed of a glossy, moistureproof membrane made of rubber hydrochloride.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/Pliofilm" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501306", "lbl" : "mylar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A polyester film made from stretched polyethylene terephthalate (PET).", "xrefs" : [ "https://en.wikipedia.org/wiki/BoPET" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "BoPET (Biaxially-oriented polyethylene terephthalate)" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501307", "lbl" : "ceramic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid environmental material that is hard, brittle, heat-resistant and corrosion-resistant, made by shaping and then firing a nonmetallic mineral at a high temperature.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ceramic" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501309", "lbl" : "booth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which is an enclosure or compartment designed for service provision." }, "comments" : [ "\"an enclosure or compartment that allows privacy or seclusion, for example when voting, broadcasting or recording sound, or making a phone call.\" OED I like this one more - except it doesn't fit \"ticket booth\", \"gas station booth\" etc." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501310", "lbl" : "switch", "type" : "CLASS", "meta" : { "definition" : { "val" : "A device which can connect, disconnect, or divert current in an electrical circuit.", "xrefs" : [ "https://en.wikipedia.org/wiki/Switch" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501311", "lbl" : "environmental monitoring area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system where environmental monitoring processes are in effect." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501312", "lbl" : "environmental monitoring program area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental monitoring area which is under observation by humans belonging to organisations with a legislative mandate to monitor the area." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501313", "lbl" : "food production environmental monitoring zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental monitoring program area within a food production facility.", "xrefs" : [ "https://www.fda.gov/media/102633/download" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501314", "lbl" : "food production environmental monitoring zone 1", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object aggregate which comprises objects whose surfaces are in contact with food during its processing in a food production facility", "xrefs" : [ "https://www.fda.gov/media/102633/download" ] }, "comments" : [ "This can be axiomatised with \"'has part' min 1 'food contact surface'\" . This can also have the axiom \"'part of' some 'food production environmental monitoring zone'\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "Zone 1" }, { "pred" : "hasBroadSynonym", "val" : "environmental monitoring zone 1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501315", "lbl" : "food production environmental monitoring zone 2", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object aggregate which comprises objects whose surfaces are not in contact with food during its processing, but which are in close proximity to those in food production environmental monitoring zone 1.", "xrefs" : [ "https://www.fda.gov/media/102633/download" ] }, "comments" : [ "This can be axiomatised with \"'has part' min 1 'food contact surface'\" . This can also have the axiom \"'part of' some 'food production environmental monitoring zone'\". The threshold for \"close proximity\" can vary based on local or national legislation. 'adjacent to' axioms may also be used for neighbouring zones." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "Zone 2" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501316", "lbl" : "food production environmental monitoring zone 3", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object aggregate which comprises a facility's set of more remote non-food-processing-contact surfaces that are in or near the processing areas (food productions environmental monitoring zones 1 and 2) and could lead to their contamination, especially through human movement.", "xrefs" : [ "https://www.fda.gov/media/102633/download" ] }, "comments" : [ "This can be axiomatised with \"'has part' min 1 'food contact surface'\" . This can also have the axiom \"'part of' some 'food production environmental monitoring zone'\". The threshold for \"close proximity\" can vary based on local or national legislation. 'adjacent to' axioms may also be used for neighbouring zones." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "Zone 3" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501317", "lbl" : "food production environmental monitoring zone 4", "type" : "CLASS", "meta" : { "definition" : { "val" : "An object aggregate which comprises objects in proximity to food production environmental monitoring zone 3.", "xrefs" : [ "https://www.fda.gov/media/102633/download" ] }, "comments" : [ "This can be axiomatised with \"'has part' min 1 'food contact surface'\" . This can also have the axiom \"'part of' some 'food production environmental monitoring zone'\". The threshold for \"close proximity\" can vary based on local or national legislation. 'adjacent to' axioms may also be used for neighbouring zones." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "Zone 4" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501318", "lbl" : "hygienic food production area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system which is part of a food production facility and whose boundaries are defined by hygienic requirements.", "xrefs" : [ "https://doi.org/10.1016/B978-1-78242-447-5.00004-6" ] }, "comments" : [ "This class is more a convenience grouping class, but can be axiomatised if a hygienic assessment process is completed." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "hygienic zone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501319", "lbl" : "food prossessing non-production area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hygienic food production area which is not an immediate part of a food manufacturing process area.", "xrefs" : [ "https://doi.org/10.1016/B978-1-78242-447-5.00004-6" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501320", "lbl" : "food production low-risk contamination area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hygienic food production area containing products having a low risk of contamination.", "xrefs" : [ "https://doi.org/10.1016/B978-1-78242-447-5.00004-6" ] }, "comments" : [ "This class includes manufacturing areas in which raw materials and/or finished products (within their primary packaging) and packaging/labeling materials are received, sampled, or stored prior to dispatch." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501321", "lbl" : "food production medium-risk contamination area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hygienic food production area in which general food processing occurs.", "xrefs" : [ "https://doi.org/10.1016/B978-1-78242-447-5.00004-6" ] }, "comments" : [ "This class includes areas in which raw materials are received, sorted, and sampled; areas within the plant where products susceptible to contamination and/or microbial growth are processed, treated, or handled; areas in which animal carcasses are cut into fresh meat products and areas in which vegetables and produce are packed. Food processing that prepares products for cooking by the consumer (e.g., raw meats, fish, and vegetables) or produces RTE products that are effectively preserved (e.g., canned or baked products) will require procesing in medium-risk hygiene areas." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501322", "lbl" : "food production high-risk contamination area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hygienic food production area containing food products that are not subjected to subsequent microbial decontamination, and where there is a risk of pathogen or microbial spoilage growth.", "xrefs" : [ "https://doi.org/10.1016/B978-1-78242-447-5.00004-6" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5192-7047" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501323", "lbl" : "residential environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environment which provides long-term shelter for its inhabitants." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501324", "lbl" : "latex", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stable dispersion (emulsion) of polymer microparticles in an aqueous medium.", "xrefs" : [ "https://en.wikipedia.org/wiki/Latex" ] }, "comments" : [ "Latex is made by some plants, but synthetic latexes can be manufactured as well." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Natural rubber, India rubber, Gum elastic, Non-vulcanized rubber" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501325", "lbl" : "transport boat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A boat which is used to transport cargo or carry passengers." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501326", "lbl" : "bottle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A container which is typically made of glass or plastic and having a tapered neck, used primarily for holding liquids.", "xrefs" : [ "https://en.wiktionary.org/wiki/bottle" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501327", "lbl" : "utensil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hand tool for domestic use, especially in the kitchen.", "xrefs" : [ "https://en.wiktionary.org/wiki/utensil" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501328", "lbl" : "fork", "type" : "CLASS", "meta" : { "definition" : { "val" : "An eating utensil with spikes used to put solid food into the mouth, or to hold food down while cutting.", "xrefs" : [ "https://en.wiktionary.org/wiki/fork" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501329", "lbl" : "spoon", "type" : "CLASS", "meta" : { "definition" : { "val" : "An eating utensil with a scooped end and a long handle.", "xrefs" : [ "https://en.wiktionary.org/wiki/spoon" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501330", "lbl" : "cup", "type" : "CLASS", "meta" : { "definition" : { "val" : "A utensil which is a hand-sized container with an open top.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cup" ] }, "comments" : [ "A cup may be used to hold liquids for pouring or drinking, or to store solids for pouring." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-8844-9165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501331", "lbl" : "healthcare environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environment which is bounded by a healthcare facility in which health care services are provided by specialized staff and equipment." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501332", "lbl" : "occupational environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environment which is the product of a particular human occupational acitivity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "work environment" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501333", "lbl" : "child care environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environment which is designed for child care." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "childcare environment" }, { "pred" : "hasNarrowSynonym", "val" : "day care environment" }, { "pred" : "hasNarrowSynonym", "val" : "daycare environment" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501334", "lbl" : "child care facility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction in which child care services are provided to a human child by specialized staff and equipment.", "xrefs" : [ "https://en.wikipedia.org/wiki/Child_care" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "childcare facility" }, { "pred" : "hasNarrowSynonym", "val" : "day care facility" }, { "pred" : "hasNarrowSynonym", "val" : "daycare facility" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501335", "lbl" : "day care facility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A child care facility in which day care services are provided, by specialized staff and equipment, to a human child during the working day." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "daycare" }, { "pred" : "hasExactSynonym", "val" : "daycare facility" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501336", "lbl" : "place of worship", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction in which individuals or a group of people such as a congregation come to perform acts of devotion, veneration, or religious study.", "xrefs" : [ "https://en.wikipedia.org/wiki/Place_of_worship" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501337", "lbl" : "temple", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building reserved in which religious or spiritual rituals and activities such as prayer and sacrifice are performed.", "xrefs" : [ "https://en.wikipedia.org/wiki/Temple" ] }, "comments" : [ "\"The term typically used for such buildings belonging to all faiths where a more specific term such as church, mosque or synagogue is not generally used in English.\" [Wikipedia]" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501338", "lbl" : "human nursery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A child care facility in which child care services are provided to young children and babies." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501339", "lbl" : "household environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environment which is bounded by a human dwelling." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501340", "lbl" : "community service centre", "type" : "CLASS", "meta" : { "definition" : { "val" : "A public building in which health, recreation or other public services to a local community are provided." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501341", "lbl" : "community health centre", "type" : "CLASS", "meta" : { "definition" : { "val" : "A healthcare facility which is used by a group of general practitioners and nurses to provide healthcare services to people in a certain area.", "xrefs" : [ "https://en.wikipedia.org/wiki/Community_health_center" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "health center" }, { "pred" : "hasExactSynonym", "val" : "healthcare center" }, { "pred" : "hasNarrowSynonym", "val" : "cottage hospital" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501342", "lbl" : "dormitory", "type" : "CLASS", "meta" : { "definition" : { "val" : "A room which contains 1) a number of beds for sleeping and 2) often some other furniture and/or residential utilities.", "xrefs" : [ "https://en.wiktionary.org/wiki/dormitory" ] }, "comments" : [ "A dormitory is often used to describe student and backpacker accommodation of this kind." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501343", "lbl" : "first nations reserve", "type" : "CLASS", "meta" : { "definition" : { "val" : "A political entity which is defined by contract between the Canadian state (\"the Crown\") and a First Nations people.", "xrefs" : [ "https://en.wikipedia.org/wiki/Indian_reserve" ] }, "comments" : [ "\"[First Nations reserves] are not to be confused with land claims areas, which involve all of that First Nations' traditional lands: a much larger territory than any other reserve.\" [Wikipedia]" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501344", "lbl" : "insecure housing", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human dwelling which may be unsustainable over the long term for an inhabitant because of financial, livability, overcrowding or other factors.", "xrefs" : [ "https://www.healthypeople.gov/2020/topics-objectives/topic/social-determinants-health/interventions-resources/housing-instability" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501345", "lbl" : "temporary residence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human dwelling which is provided to one or more persons on a short-term basis." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-9578-0788" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-03-15T04:00:01.750Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03501346", "lbl" : "chopstick", "type" : "CLASS", "meta" : { "definition" : { "val" : "An eating utensil which is a thin stick used in equal length pairs to manipulate food and bring it into a mouth.", "xrefs" : [ "https://en.wikipedia.org/wiki/Chopsticks" ] }, "basicPropertyValues" : [ { "pred" : 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"http://purl.org/dc/elements/1.1/date", "val" : "2020-08-03T18:35:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "CHEBI:53243" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "CHEBI:53550" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "CHEBI:60027" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "CHEBI:60034" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "CHEBI:60737" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "CHEBI:61452" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "CHEBI:61642" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "ENVO:01000777" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510040", "lbl" : "stain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A preparation with dye or pigment used to deposit coloration to a substrate.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/stain" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-08-03T18:36:50Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510041", "lbl" : "wood stain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stain which has colorants dissolved and/or suspended in a vehicle or solvent, used to add color to wood.", "xrefs" : [ "https://en.wikipedia.org/wiki/Wood_stain" ] }, "comments" : [ "Wood stain is designed to add color to substrates, while still leaving some of the substrate visible." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2020-08-03T18:37:42Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510055", "lbl" : "rubber cement", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is composed of elastic polymers mixed in a solvent." }, "comments" : [ "Solvents typically used include acetone, hexane, heptane or toluene." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cow gum" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-12T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510056", "lbl" : "methyl cellulose paste", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is 1) composed primarily of methyl cellulose and water, and 2) formulated to fix wallpaper to walls." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "wallpaper adhesive" }, { "pred" : "hasExactSynonym", "val" : "wallpaper paste" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-12T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510057", "lbl" : "permanent hair dye", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is 1) manufactured and 2) primarily composed of hydrogen peroxide and ammonia, and 3) when applied to hair, can alter the natural hair pigments for 6-8 weeks." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "hair color" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-12T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510058", "lbl" : "pharmaceutical ink", "type" : "CLASS", "meta" : { "definition" : { "val" : "A colorant fluid which is 1) manufactured and 2) composed of alcohol, titanium dioxide, and propylene glycol." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-12T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510060", "lbl" : "gel ink", "type" : "CLASS", "meta" : { "definition" : { "val" : "A colorant fluid which is 1) manufactured and 2) composed of copper phthalocyanine, iron oxides, water, and biopolymers." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-12T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510061", "lbl" : "soy ink", "type" : "CLASS", "meta" : { "definition" : { "val" : "A colorant fluid which is 1) manufactured and 2) primarily composed of soybean oil, as well as pigment, resin, and wax." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-12T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510062", "lbl" : "aqueous inkjet printer ink", "type" : "CLASS", "meta" : { "definition" : { "val" : "A colorant fluid which is 1) manufactured, 2) primarily composed of water, as well as glycol, and dye, and 3) intended for use in inkjet printers." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-12T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510064", "lbl" : "emissions from petroleum combustion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is composed primarily of gases and particles produced by the combustion of petroleum fuels." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-12T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510065", "lbl" : "colorant fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid environmental material which 1) contains at least one substance which can act as a chemical colorant." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-15T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510066", "lbl" : "chemical colorant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A function which is realised by a chemical when applied to a material, such that it alters the material's colour." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-3410-4655" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7356-1779" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-15T15:10:14.018Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03510070", "lbl" : "toxic waste", "type" : "CLASS", "meta" : { "definition" : { "val" : "Waste which contains toxic components (e.g., heavy metals or radiation) which can cause harm to organisms and/or the environment.", "xrefs" : [ "https://en.wikipedia.org/wiki/Toxic_waste" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2022-01-18T17:35:02Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-7463-6306" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03520000", "lbl" : "low atmospheric level", "type" : "CLASS", "meta" : { "comments" : [ "A part of the troposphere which extends from the Earth's surface to 2 km (0 - 6500 ft) height." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low étage" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "To be revised when we have information about the real definition. The definitions given by WMO cloud atlas are entered as comment, as these are not the defining features of the levels but the result of whatever it is that defines the levels (I assume temperature, density, etc. but have not yet found clear information about this). The german wikipedia page notes layers that coincide with the extent of the low étage, however, I have not yet seen further mention of them elsewhere and am thus hesitant about adding them." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2996-719X" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03520001", "lbl" : "middle atmospheric level", "type" : "CLASS", "meta" : { "comments" : [ "A part of the troposphere which extends from 2 km to 4 km (6 500 – 13 000 ft) height in the polar region, from 2 km to 7 km (6 500 – 23 000 ft) height in the temperate region, and from 2 km to 8 km (6 500 – 25 000 ft) height in the tropical region." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "middle étage" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "To be revised when we have information about the real definition. The definitions given by WMO cloud atlas are entered as comment, as these are not the defining features of the levels but the result of whatever it is that defines the levels (I assume temperature, density, etc. but have not yet found clear information about this)." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2996-719X" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03520002", "lbl" : "high atmospheric level", "type" : "CLASS", "meta" : { "comments" : [ "A part of the troposphere which extends from 3 km to 8 km (10 000 – 25 000 ft) height in the polar region, from 5 km to 13 km (16 500 – 45 000 ft) height in the temperate region, and from 6 km to 18 km (20 000 – 60 000 ft) height in the tropical region." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high étage" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "To be revised when we have information about the real definition. The definitions given by WMO cloud atlas are entered as comment, as these are not the defining features of the levels but the result of whatever it is that defines the levels (I assume temperature, density, etc. but have not yet found clear information about this)." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2996-719X" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03520003", "lbl" : "cloud part", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of a cloud." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This definition is practical but may need refinement." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2996-719X" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03520004", "lbl" : "cloud base", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud part which is closest to the surface of the astronomical body local to the cloud." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2996-719X" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03520005", "lbl" : "cloud top", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cloud part which is furthest from the surface of the astronomical body local to the cloud." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2996-719X" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03520006", "lbl" : "supercooled water droplet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water droplet which exists at temperatures below 0°C (273.15K).", "xrefs" : [ "https://www.skybrary.aero/index.php/Supercooled_Water_Droplets" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2996-719X" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03520007", "lbl" : "snow crystal", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water ice crystal which is constituted by water molecules aligned in a hexagonal array.", "xrefs" : [ "http://www.snowcrystals.com/science/science.html", "https://www.athropolis.com/arctic-facts/fact-snow-crystal.htm", "https://www.noaa.gov/stories/how-do-snowflakes-form-science-behind-snow" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "snowflake" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2996-719X" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600000", "lbl" : "cleanroom", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building part which is maintained such that the number of foreign particulates within it is controlled.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cleanroom" ] }, "comments" : [ "The cleanliness level of a cleanroom is quantified by the number of particles per cubic meter at a predetermined molecule measure.\n\nCleanrooms are designed to maintain extremely low levels of particulates, such as dust, airborne organisms, or vaporized particles. Cleanroons are used in the manufacture of pharmaceutical items, integrated circuits, CRT, LCD, OLED and microLED displays." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "clean room" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-02T21:33:40.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600001", "lbl" : "chemically contaminated sediment", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sediment which contains some chemical contaminant.", "xrefs" : [ "https://en.wikipedia.org/wiki/Contamination" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "See https://github.com/EnvironmentOntology/envo/issues/1102 for a possible design pattern.\n\nUses undesirability standard, compared to polluted river's ecological impact standard. What is the relation to ENVO:00002114 'chemically enriched sediment'? Does 'element' in the definition refer to something found in the periosic table (like selenium) or the member of some set, aka an entity?" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600002", "lbl" : "cooling water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Liquid water which is a participant in a water cooling process.", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_cooling" ] }, "comments" : [ "Cooling water is commonly used for cooling automobile internal combustion engines and power stations." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-02T21:33:40.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600003", "lbl" : "drinking water pipeline network", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pipeline network which is used to transport drinking water to consumers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pipeline_transport" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "drinking water pipeline" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600004", "lbl" : "drinking water treatment plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "An industrial building in which water undergoes a purification process to make it fit for human consumption.", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_treatment" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "CM: drinking water treatment plant should have an edge connecting to its function or a process\nMAM: Like some yet-to-be-created sibling of pollution control ENVO:02500042 ? Or sibling of environment control function OBI:0000401? Can't find suitable function currently in ENVO. Add term and add axioms later" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-02T21:33:40.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600005", "lbl" : "electrical switch", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is capable of connecting or disconnecting the conducting path in an electrical circuit, interrupting the electric current or diverting it from one conductor to another.", "xrefs" : [ "https://en.wikipedia.org/wiki/Switch" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600006", "lbl" : "food waste", "type" : "CLASS", "meta" : { "definition" : { "val" : "A waste material which is primarily composed of uneaten food and removed from the food supply chain.", "xrefs" : [ "https://en.wikipedia.org/wiki/Food_waste" ] }, "comments" : [ "The causes of food waste or loss are numerous and can occur during production, processing, distribution, retail and consumption." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "food loss" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "does FoodOn want this?" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600007", "lbl" : "formation fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluid environmental material which is contained in geologic formations naturally.", "xrefs" : [ "https://en.wikipedia.org/wiki/Formation_fluid" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "assert contained in some child of astronmical body part? cavity? Parent class could use a better definition?" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600008", "lbl" : "intensive care unit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A building part which has been constructed to support the provision of intensive care medicine to patients with severe or life-threatening illnesses and injuries.", "xrefs" : [ "https://en.wikipedia.org/wiki/Intensive_care_unit" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "An ICU could be a part-of a hospital, but it would not be a subclass of a hospital. That's even reflected in the textual definition. THEREFORE parent class changed to building part.\n\nCould be in a hospital and related to some particular hospital department provides." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600009", "lbl" : "interstitial water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Liquid water which occurs naturally within the pores of rocks and sediments.", "xrefs" : [ "https://link.springer.com/chapter/10.1007/978-94-010-9488-7_14", "https://www.glossary.oilfield.slb.com/en/Terms/i/interstitial_water.aspx" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600010", "lbl" : "membrane bioreactor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bioreactor which has a membrane as a part", "xrefs" : [ "https://en.wikipedia.org/wiki/Membrane_bioreactor" ] }, "comments" : [ "It is widely used for municipal and industrial wastewater treatment. The membrane is usually used to perform microfiltration, ultrafiltration or osmosis, etc." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-02T21:33:40.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600011", "lbl" : "mineral horizon", "type" : "CLASS", "meta" : { "definition" : { "val" : "A soil horizon which is primarily composed of mineral material.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soil_horizon", "https://pikeconservation.org/soil-profile/#:~:text=The%20uppermost%20horizon%20is%20called,nutrients%20that%20enrich%20the%20soils" ] }, "comments" : [ "Usually less than 20% organic carbon. The term mineral horizon refers to surface soil/topsoil and subsoil layer of the soil. When user does not/could not refer to the topsoil or subsoil specifically, the broader term, mineral horizon can be used." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "ADDED 'composed primarily of' RO:0002473 mineral material 'ENVO:01000256'" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-02T21:33:40.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600012", "lbl" : "oil pipeline network", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pipeline network which is used to transport oil to consumers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pipeline_transport" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "oil pipeline" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600013", "lbl" : "bituminous sand", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which consists of either loose sands or partially consolidated sandstone, containing a naturally occurring mixture of sand, clay, and water, soaked with a dense and extremely viscous form of petroleum.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oil_sands" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "crude bitumen" }, { "pred" : "hasExactSynonym", "val" : "oil sands" }, { "pred" : "hasExactSynonym", "val" : "tar sands" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "TODO: create an astonomical body part 'bituminous sands\" and assert composed primarily of realtionship. Xref https://github.com/EnvironmentOntology/envo/issues/1154.\n\nTREATED THIS as a material entity. could add something like \"oil sands deposit\" as a geospatial location later." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600014", "lbl" : "pipeline network", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which is used to transport a material which is primarily composed of liquid or gas through a system of pipes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pipeline_transport" ] }, "comments" : [ "Pipeline networks typically materials either from 1) a production area to a market area for consumption, 2) a production area to an area for waste disposal." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Getting an example of use could be helpful. Are some environmental samples collected from the outside of a pipe or its fittings? Or taken from inside the pipe? Removing \"transport\" from the label may make the labels of sublasses more readable. However, \"pipeline\" alone could mean several unrelated things, like software pipelines. https://www.eia.gov/energyexplained/natural-gas/natural-gas-pipelines.php uses the term \"pipeline network\". ALSO could this be a transport feature?\n\nXref https://github.com/EnvironmentOntology/envo/issues/1111." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600015", "lbl" : "polluted river", "type" : "CLASS", "meta" : { "definition" : { "val" : "A river which has elevated levels of contaminants.", "xrefs" : [ "https://en.wikipedia.org/wiki/Pollution", "https://en.wikipedia.org/wiki/Water_pollution" ] }, "comments" : [ "The contaminants may cause adverse changes in the ecosystems associated with it." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Uses 'adverse to ecosystem standard'. Compare to undesirability standard in 'contaminated sediment'. See also 'polluted lake'." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600016", "lbl" : "saprolite", "type" : "CLASS", "meta" : { "definition" : { "val" : "Rock which is derived from bedrock through chemical weathering", "xrefs" : [ "https://en.wikipedia.org/wiki/Saprolite" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "add chemcical weathering term to improve axiomitization" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600017", "lbl" : "slurry", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is composed of insoluble solid particles suspended in a liquid.", "xrefs" : [ "https://en.wikipedia.org/wiki/Slurry", "https://www.dictionary.com/browse/slurry", "https://www.merriam-webster.com/dictionary/slurry" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "term requester also included and , but they may only be found in wikipedia's definition" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600018", "lbl" : "organic horizon", "type" : "CLASS", "meta" : { "definition" : { "val" : "A soil horizon which is composed primarily of organic matter.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soil_horizon", "https://pikeconservation.org/soil-profile/#:~:text=The%20uppermost%20horizon%20is%20called,nutrients%20that%20enrich%20the%20soils.", "https://soilsofcanada.ca/soil-formation/horizons.php" ] }, "comments" : [ "The organic matter is this layer is genreally derived from biomatter." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "soil organic layer" }, { "pred" : "hasExactSynonym", "val" : "organic surface layer" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "ADDED 'composed primarily of' RO:0002473 'soil organic matter' ENVO:04000008" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-02T21:33:40.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600019", "lbl" : "sugarcane vinasse", "type" : "CLASS", "meta" : { "definition" : { "val" : "Vinasse which is produced during the rectification and distillation of ethanol from sugar cane.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vinasse" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Might be nice to add an edge like 'derives from' RO:0001000 sugarcane or 'sugar cane plant' FOODON:03411378? Note that importing FOODON terms can bring in unexpected dependencies. Try again later!" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-02T21:33:40.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600020", "lbl" : "tailings dam", "type" : "CLASS", "meta" : { "definition" : { "val" : "An earth-filled dam which is used for the storage of mining operations byproducts, after separating the ore from the gangue.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tailings_dam" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "dam is a functional label. we suggest distributing the terms in this definition.\n\nMight also want to define a new term gangue." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600021", "lbl" : "tailings pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which is used as a storage area for mining tailings.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tailings#Tailings_dams_and_ponds" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "not placing under 'pond' class becasue contents may not be primarily be composed of water.\n\nconsider revising 'pond' semantics" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-04-05T16:38:47.162Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600022", "lbl" : "vinasse", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is formed as a liquid byproduct generated during the rectification and distillation of ethanol.", "xrefs" : [ "https://en.wikipedia.org/wiki/Vinasse", "https://www.frontiersin.org/articles/10.3389/fenrg.2017.00007/full" ] }, "comments" : [ "Vinasse is produced by the sugar or ethanol industry and can be produced at volumes as high as 20-fold of ethanol. It is typically sulfur-rich, low pH, dark-colored and odorous." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-02-02T21:33:40.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600030", "lbl" : "soil horizon", "type" : "CLASS", "meta" : { "definition" : { "val" : "A soil layer which is parallel to the soil surface and which has roughly homogenous physical, chemical and biological properties relative to the soil layers above or beneath it.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soil_horizon" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600031", "lbl" : "earth-filled dam", "type" : "CLASS", "meta" : { "definition" : { "val" : "An embankment dam which is primarily composed of compacted earth.", "xrefs" : [ "https://en.wikipedia.org/wiki/Embankment_dam" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "earthen dam" }, { "pred" : "hasBroadSynonym", "val" : "terrain dam" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600032", "lbl" : "embankment dam", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dam which is created by the placement and compaction of a complex semi-plastic mound of various compositions of soil, sand, clay, or rock.", "xrefs" : [ "https://en.wikipedia.org/wiki/Embankment_dam" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600033", "lbl" : "residential backyard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A yard which consists of land immediately adjacent to the back of a residential building", "xrefs" : [ "https://en.wikipedia.org/wiki/Backyard" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "back yard" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600034", "lbl" : "cay", "type" : "CLASS", "meta" : { "definition" : { "val" : "An island which is small, low in elevation, sandy, and located on the surface of a coral reef.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cay" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "caye" }, { "pred" : "hasRelatedSynonym", "val" : "key" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600035", "lbl" : "cold room", "type" : "CLASS", "meta" : { "definition" : { "val" : "A room which is maintained at lower than ambient temperatures.", "xrefs" : [ "https://blog.froztec.com/en/what-is-a-cold-room-and-why-do-you-need-it-for-your-products", "https://www.appropedia.org/Cold_room" ] }, "comments" : [ "Cold rooms are generally used as walk-in storage facilities or to perform tasks requiring cooler ambient temperatures." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chiller room" }, { "pred" : "hasExactSynonym", "val" : "cool room" }, { "pred" : "hasExactSynonym", "val" : "refrigerating chamber" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600036", "lbl" : "pathogen-suppressive soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which has properties that restrict a pathogen's ability to establish itself, persist, or cause disease that results in long-term harm.", "xrefs" : [ "https://www.frontiersin.org/articles/10.3389/fmicb.2017.02529/full", "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7953945/", "https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/suppressive-soils" ] }, "comments" : [ "The pathogenicity that is suppressed is typically directed towards plants, especially crops. Soils are typically classified as pathogen-suppressive if a pathogen 1) cannot establish itself or persist, 2) is able to establish itself, but causes little or no damage, or 3) is able to establishe itself, but only causes disease that does not result in long-term harm." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "disease-suppressive soil" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600037", "lbl" : "eutrophic pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pond which has nutrient-rich water.", "xrefs" : [ "https://en.wikipedia.org/wiki/Eutrophication" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600038", "lbl" : "experimental forest ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A forest ecosystem which is designated for research.", "xrefs" : [ "https://en.wikipedia.org/wiki/Experimental_forest" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600039", "lbl" : "fermentation pit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pit which has been constructed for use in fermentation processes that will yield alcoholic spirits.", "xrefs" : [ "https://en.wikipedia.org/wiki/Baijiu", "https://www.frontiersin.org/articles/10.3389/fmicb.2020.01223/full" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600040", "lbl" : "fermentation starter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which assists starting a fermentation process which is intended to prepare foods and alcoholic drinks.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fermentation_starter" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Daqu" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600041", "lbl" : "marine lake", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lake which is connected to a marine water body via tunnels or cracks in the soil.", "xrefs" : [ "https://en.wikipedia.org/wiki/Marine_lake" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600042", "lbl" : "marine lake water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Liquid water which is either part of or was removed from a marine lake.", "xrefs" : [ "https://en.wikipedia.org/wiki/Marine_lake" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600043", "lbl" : "meromictic pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pond which has layers of water that do not intermix.", "xrefs" : [ "https://en.wikipedia.org/wiki/Meromictic_lake" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600044", "lbl" : "organic farm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A farm which is managed using practices certified to be organic by a competent authority.", "xrefs" : [ "https://en.wikipedia.org/wiki/Organic_farming" ] }, "comments" : [ "What qualifies as an organic farm varies significantly across nations and subnational entities. In general, however, organic farming involves the use of biological pest control, mixed cropping, natural fertilisers, and the fostering of insect predators. Further, organic certification often requires that synthetic pesticides and fertilisers are not used." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600045", "lbl" : "plant pot", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is designed to function as a container for growing plants.", "xrefs" : [ "https://www.collinsdictionary.com/dictionary/english/plant-pot" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600046", "lbl" : "processed tobacco", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is produced by curing, subsequent aging, slow oxidation and degradation of carotenoids in tobacco leaves.", "xrefs" : [ "https://en.wikipedia.org/wiki/Curing_of_tobacco#Processes" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600047", "lbl" : "raceway pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pond which humans have constructed for the cultivation of algae.", "xrefs" : [ "https://en.wikipedia.org/wiki/Raceway_pond" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "algal pond" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600048", "lbl" : "shower curtain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is composed of flexible material and is intended to be hung such that it impedes the spray of water between a shower fixture and the rest of a room.", "xrefs" : [ "https://dictionary.cambridge.org/us/dictionary/english/shower-curtain" ] }, "comments" : [ "Shower curtains are typically made from plastic or another water resistant or waterproof material." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-06-24T03:53:29.138Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600049", "lbl" : "smokeless tobacco", "type" : "CLASS", "meta" : { "definition" : { "val" : "Processed tobacco which has been treated for use by placing it between the gum and cheek or lip, chewed, or sniffed, but not smoked.", "xrefs" : [ "https://en.wikipedia.org/wiki/Smokeless_tobacco" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", 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input or control to an information processing system by touching a display screen with a special stylus or one or more fingers.", "xrefs" : [ "https://en.wikipedia.org/wiki/Touchscreen" ] }, "comments" : [ "Touching the screen with multiple fingers is considered a multi-touch gesture." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600061", "lbl" : "shipwreck", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anthropogenic litter which consists of an abandoned ship's remains.", "xrefs" : [ "https://en.wikipedia.org/wiki/Shipwreck" ] }, "comments" : [ "A shipwreck can be found beached on land or sunken to the bottom of a body of water." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600062", "lbl" : "fountain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which supplies drinking water by squirting it into a basin or jets water into the air for a decorative or dramatic effect.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fountain" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600063", "lbl" : "tube well", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water well in which a long, 100–200 millimetres-wide, stainless steel tube or pipe is bored into an underground aquifer to lift water using a pump.", "xrefs" : [ "https://en.wikipedia.org/wiki/Tube_well" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600064", "lbl" : "microbialite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sedimentary rock which is made of carbonate mud whose formation is mediated by microbes in the benthic zone.", "xrefs" : [ "https://en.wikipedia.org/wiki/Microbialite" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600065", "lbl" : "spring water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which comes from a spring.", "xrefs" : [ "https://en.wikipedia.org/wiki/Spring_(hydrology)" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600066", "lbl" : "halite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A salt mass which consists of isometric crystals of sodium chloride (NaCl).", "xrefs" : [ "https://en.wikipedia.org/wiki/Halite" ] }, "comments" : [ "Typically colorless or white. Halite may also occur in various color including light blue, dark blue, purple, pink, red, orange, yellow or gray depending on inclusion of other materials, impurities, and structural or isotopic abnormalities in the crystals." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "rock salt" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600067", "lbl" : "neonatal intensive care unit", "type" : "CLASS", "meta" : { "definition" : { "val" : "An intensive care unit (ICU) specializing in the care of ill or premature newborn infants.", "xrefs" : [ "https://en.wikipedia.org/wiki/Neonatal_intensive_care_unit" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ICN" }, { "pred" : "hasExactSynonym", "val" : "NICU" }, { "pred" : "hasExactSynonym", "val" : "intensive care nursery" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600068", "lbl" : "ice wedge", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geological fracture which is formed during winter months by a narrow or thin piece of ice.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ice_wedge" ] }, "comments" : [ "The ice itself can measure up to 3–4 meters in length at ground level can extend downwards into the ground up to several meters." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600069", "lbl" : "nest of alligator", "type" : "CLASS", "meta" : { "definition" : { "val" : "An animal habitation which is built by alligators from plants and decomposing vegetation in order to protect their eggs from predators.", "xrefs" : [ "https://en.wikipedia.org/wiki/Nest", "https://new.smm.org/learn/activities/build-an-alligator-nest" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600070", "lbl" : "river plume", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oceanic front in which mixing of river discharge and saline seawater occurs.", "xrefs" : [ "https://en.wikipedia.org/wiki/River_plume" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600071", "lbl" : "cyanobacterial bloom", "type" : "CLASS", "meta" : { "definition" : { "val" : "A feature which arises from a rapid multiplication of cyanobacteria, causing marked visible discoloration of the water.", "xrefs" : [ "https://pubmed.ncbi.nlm.nih.gov/29946124/", "https://www.cdc.gov/habs/pdf/cyanobacteria_faq.pdf" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600072", "lbl" : "ophiolites", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planetary structural layer which consists of oceanic crust and the underlying upper mantle and has been uplifted and exposed above sea level.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oceanic_crust", "https://en.wikipedia.org/wiki/Ophiolite" ] }, "comments" : [ "Opholites are often emplaced onto continental crustal rocks" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600073", "lbl" : "contaminated land", "type" : "CLASS", "meta" : { "definition" : { "val" : "Land which has elevated levels of some contaminants or substances that are potentially hazardous to health or the environment.", "xrefs" : [ "https://en.wikipedia.org/wiki/Contaminated_land" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600074", "lbl" : "aquaculture farm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An agricultural aquatic ecosystem in which fish, crustaceans, mollusks, aquatic plants and algae are cultivated.", "xrefs" : [ "https://en.wikipedia.org/wiki/Aquaculture", "https://www.dictionary.com/browse/farm" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "aquaculture" }, { "pred" : "hasBroadSynonym", "val" : "aquafarming" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600075", "lbl" : "oil mill", "type" : "CLASS", "meta" : { "definition" : { "val" : "An industrial building in which oil-bearing seeds or vegetable materials are crushed and pressed with a grinding mill in order to extract oils.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oil_mill" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600076", "lbl" : "waste stabilization pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which confines wastewater in a depression enclosed by earthen structures.", "xrefs" : [ "https://en.wikipedia.org/wiki/Waste_stabilization_pond" ] }, "comments" : [ "Presumably the waste is detained prior to treatment." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "WSPs" }, { "pred" : "hasExactSynonym", "val" : "stabilization ponds" }, { "pred" : "hasExactSynonym", "val" : "waste stabilization lagoons" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600077", "lbl" : "photobioreactor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bioreactor which utilizes a light source to cultivate phototrophic microorganisms.", "xrefs" : [ "https://en.wikipedia.org/wiki/Photobioreactor" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600078", "lbl" : "oil refinery", "type" : "CLASS", "meta" : { "definition" : { "val" : "An industrial building in which crude oil is transformed and refined into useful products.", "xrefs" : [ "https://en.wikipedia.org/wiki/Oil_refinery" ] }, "comments" : [ "The useful products include petroleum naphtha, gasoline, diesel fuel, asphalt base, heating oil, kerosene, liquefied petroleum gas, jet fuel and fuel oils. Oil refineries are typically large, sprawling industrial complexes with extensive piping running throughout, carrying streams of fluids between large chemical processing units, such as distillation columns." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600079", "lbl" : "shredder", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is used for cutting crops, vegetables, wood, metal, paper documents, etc into small pieces.", "xrefs" : [ "https://dictionary.cambridge.org/us/dictionary/english/shredder", "https://www.dictionary.com/browse/shredder" ] }, "comments" : [ "A shredder could more specifically be consered a machine." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600080", "lbl" : "industrial park", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which is used for the purpose of industrial development.", "xrefs" : [ "https://en.wikipedia.org/wiki/Industrial_park" ] }, "comments" : [ "Industrial parks are usually located on the edges of, or outside, the main residential area of a city and that can be thought of as a more \"heavyweight\" version of a business park or office park, which has offices and light industry, rather than heavy industry." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : 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"https://link.springer.com/chapter/10.1007/978-94-011-1226-0_1" ] }, "comments" : [ "The presence or absence of fluids exerts a fundamental control on rheology." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600083", "lbl" : "mofetta", "type" : "CLASS", "meta" : { "definition" : { "val" : "A geological fracture, found near volacnoes in the final phase of thier activity, chiefly discharging carbon dioxide and possibly other vapors.", "xrefs" : [ "https://en.wikipedia.org/wiki/Mofetta" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600084", "lbl" : "lichen material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organic material which is derived from lichen mats.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lichen" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600085", "lbl" : "buoy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which floats in water and can be used a navigational marker among other purposes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Buoy" ] }, "comments" : [ "Buoy can be anchored (stationary) or allowed to drift with ocean currents." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600086", "lbl" : "water filter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is used to remove contaminants from water impeding the flow of particles or solutes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Water_filter" ] }, "comments" : [ "Fine physical barrier, a chemical process, or a biological process are applied in the water filter. Filters cleanse water to different extents for purposes such as providing agricultural irrigation, accessible drinking water, public and private aquariums, and the safe use of ponds and swimming pools." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600087", "lbl" : "greenhouse", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction which provides regulated climatic conditions for the growth of plants and whose walls and roof are made chiefly of transparent material, such as glass.", "xrefs" : [ "https://en.wikipedia.org/wiki/Greenhouse" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "glasshouse" }, { "pred" : "hasBroadSynonym", "val" : "hothouse" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6670-9157" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-07-03T00:22:16.764Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600090", "lbl" : "alcohol fermentation pit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fermentation pit which is constructed to facilitate the fermentation of alcoholic substances." }, "comments" : [ "Definition from 2021-08-05 call with Buttigieg, Duncan and Miller" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-9076-6066" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-9625-1899" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-08-09T15:00:00.000Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600091", "lbl" : "clay fermentation pit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fermentation pit which is constructed from clay." }, "comments" : [ "Definition from 2021-08-05 call with Buttigieg, Duncan and Miller" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-9076-6066" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-9625-1899" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-08-09T15:00:00.000Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600092", "lbl" : "artificial pond", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pond which has been constructed by humans or their technologies." }, "comments" : [ "Definition from 2021-08-05 call with Buttigieg, Duncan and Miller" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-9076-6066" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-9625-1899" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-08-09T15:00:00.000Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600093", "lbl" : "artificial satellite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A human construction that has intentionally been placed into orbit.", "xrefs" : [ "https://en.wikipedia.org/wiki/Satellite" ] }, "comments" : [ "Definition from 2021-08-05 call with Buttigieg, Duncan and Miller", "Not to be confused with a natural satellite like the earth's moon (https://en.wikipedia.org/wiki/Natural_satellite)" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-9076-6066" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0001-9625-1899" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2021-08-09T15:00:00.000Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600094", "lbl" : "stream pool", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water body which is created in a stream by local scour or impoundment and has some structural control.", "xrefs" : [ "https://data.neonscience.org/documents/10179/2093436/NEON.DOC.003044vD/6d60d722-b43e-4654-bca3-524527771e66" ] }, "comments" : [ "Pool water depth is above average for the stream. If if all the running water in the stream was shut off, areas in the stream that still hold water are pools. Pool water velocity is below average for the reach, causing fine sediments to deposit in pools. Pools are generally longer than they are wide (unless they are plunge pools), and are 1.5 x deeper at their maximum depth than they are at their crest" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "pool" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5004-3362" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2023-08-25T12:17:42.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600095", "lbl" : "stream run", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hydroform which is that part of a stream where water flows swiftly and uniformly with low surface water agitation.", "xrefs" : [ "https://data.neonscience.org/documents/10179/2093436/NEON.DOC.003044vD/6d60d722-b43e-4654-bca3-524527771e66" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "run" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5004-3362" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2023-08-25T12:17:42.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03600096", "lbl" : "step pool", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stream pool which is formed as a result of high-gradient, steep streams where water cascades over a rock or woody snag.", "xrefs" : [ "http://thanospapanicolaou.com/files/2013/01/step-pool.pdf", "https://data.neonscience.org/documents/10179/2093436/NEON.DOC.003044vD/6d60d722-b43e-4654-bca3-524527771e66" ] }, "comments" : [ "Due to the gradient and surrounding geology, this pattern continues down the stream: step (drop), pool, step, pool, etc." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-5004-3362" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2023-08-25T12:17:42.901Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605000", "lbl" : "periphytic biofilm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Biofilm consisting of a mixture of algae, cyanobacteria, microbes, and detritus.", "xrefs" : [ "https://data.neonscience.org/documents/10179/1883159/NEON.DOC.003044vE/05ca8fcc-33ba-a5b2-0e93-8f4001f38c37", "https://www.frontiersin.org/articles/10.3389/fmicb.2021.684903/full" ] }, "comments" : [ "Periphytic biofilm coats the submerged surfaces in most bodies of water" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Periphyton" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605001", "lbl" : "epilithon", "type" : "CLASS", "meta" : { "definition" : { "val" : "Periphyton colonizing rock substrata", "xrefs" : [ "https://data.neonscience.org/documents/10179/1883159/NEON.DOC.003044vE/05ca8fcc-33ba-a5b2-0e93-8f4001f38c37" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605002", "lbl" : "epipelon", "type" : "CLASS", "meta" : { "definition" : { "val" : "Periphyton colonizing silt substrata", "xrefs" : [ "https://data.neonscience.org/documents/10179/1883159/NEON.DOC.003044vE/05ca8fcc-33ba-a5b2-0e93-8f4001f38c37" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605003", "lbl" : "epiphyton", "type" : "CLASS", "meta" : { "definition" : { "val" : "Periphyton colonizing surface of aquatic plants", "xrefs" : [ "https://data.neonscience.org/documents/10179/1883159/NEON.DOC.003044vE/05ca8fcc-33ba-a5b2-0e93-8f4001f38c37" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605004", "lbl" : "epipsammon", "type" : "CLASS", "meta" : { "definition" : { "val" : "Periphyton colonizing sand substrata", "xrefs" : [ "https://data.neonscience.org/documents/10179/1883159/NEON.DOC.003044vE/05ca8fcc-33ba-a5b2-0e93-8f4001f38c37" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605005", "lbl" : "epixylon", "type" : "CLASS", "meta" : { "definition" : { "val" : "Periphyton colonizing woody substrata", "xrefs" : [ "https://data.neonscience.org/documents/10179/1883159/NEON.DOC.003044vE/05ca8fcc-33ba-a5b2-0e93-8f4001f38c37" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605006", "lbl" : "stream water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which is part of a stream." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-9076-6066" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2024-01-12T13:48:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605007", "lbl" : "freshwater stream", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stream which is composed primarily of fresh water." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-9076-6066" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2024-01-10T19:48:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605008", "lbl" : "freshwater stream biome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A freshwater stream ecosystem which is undergoing climactic ecological succession." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-9076-6066" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2024-01-10T19:19:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_03605009", "lbl" : "freshwater stream ecosystem", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecosystem in which the composition, structure, and function of resident ecological assemblages are primarily determined by a freshwater stream." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-9076-6066" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2024-01-10T19:18:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000000", "lbl" : "adfreezing", "type" : "CLASS", "meta" : { "definition" : { "val" : "Adfreezing is a freezing process during which two objects adhere to each other via ice.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/adfreezing" ] }, "subsets" : [ "\"envoNceas\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-03-04T18:47:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000001", "lbl" : "frost heaving process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Frost heaving is a process during which an upwards swelling of soil occurs due to freezing conditions caused by an increasing presence of ice as it grows towards the surface.", "xrefs" : [ "https://orcid.org/0000-0003-4808-4736", "https://en.wikipedia.org/wiki/Frost_heaving" ] }, "subsets" : [ "\"envoNceas\"", "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-03-04T20:17:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000002", "lbl" : "temperature of sea surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A water temperature which inheres in water close to the surface of an ocean or sea.", "xrefs" : [ "http://www.goosocean.org/components/com_oe/oe.php?task=download&id=34498&version=1.0&lang=1&format=1", "https://en.wikipedia.org/wiki/Sea_surface_temperature" ] }, "comments" : [ "The exact meaning of surface varies according to the measurement method used, but it is between 1 millimetre (0.04 in) and 20 metres (70 ft) below the sea surface." ], "subsets" : [ "\"envoEOVs\"", "\"envoMarine\"", "\"envoNceas\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ocean surface temperature" }, { "pred" : "hasExactSynonym", "val" : "sea surface temperature" }, { "pred" : "hasExactSynonym", "val" : "temperature of the ocean surface" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-03-06T00:50:17Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000003", "lbl" : "concentration of carbon dioxide in soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of carbon dioxide when measured in soil." }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-03-14T21:13:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000004", "lbl" : "concentration of carbon dioxide in air", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of carbon dioxide when measured in air." }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-03-14T21:24:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000005", "lbl" : "concentration of carbon dioxide in freshwater", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of carbon dioxide when measured in freshwater." }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-03-14T21:29:50Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000006", "lbl" : "concentration of carbon dioxide in seawater", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of carbon dioxide when measured in seawater." }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-03-14T21:35:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000007", "lbl" : "lake water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water which is part of a lake." }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-03-20T20:15:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000008", "lbl" : "soil organic matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organic material in soil, which consists of plant and animal residues at various stages of decomposition, cells and tissues of soil organisms, and substances synthesized by soil organisms.", "xrefs" : [ "https://en.wikipedia.org/wiki/Soil_organic_matter" ] }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-04-05T00:53:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000009", "lbl" : "active permafrost layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer which is composed of ground that is 1) subject to annual thawing and freezing and 2) present in areas underlain by permafrost.", "xrefs" : [ "https://nsidc.org/cryosphere/glossary/term/active-layer" ] }, "subsets" : [ "\"envoNceas\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "active layer of permafrost" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Potential synonyms are seasonal frost, frost zone, and mollisol. See issue #741 in GitHub for additional details. These synonyms should be validated in a cryohackathon." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-04-08T05:22:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000010", "lbl" : "soil surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface layer which is composed primarily of soil." }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-04-12T17:35:13Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000011", "lbl" : "bare soil surface layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A soil surface which is exposed to the troposphere, with no appreciable cover from vegetation or other material.", "xrefs" : [ "https://www.nrcs.usda.gov/wps/portal/nrcs/detail/tx/home/?cid=stelprdb1254158" ] }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-04-12T17:57:08Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000012", "lbl" : "particulate organic matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate environmental material which is composed primarily of organic material.", "xrefs" : [ "https://en.wikipedia.org/wiki/Particulate_organic_matter" ] }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible." }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-04-30T18:33:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000013", "lbl" : "particulate organic carbon", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate organic matter which is composed primarily of carbon.", "xrefs" : [ "https://serc.carleton.edu/microbelife/research_methods/biogeochemical/organic_carbon.html" ] }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-04-30T18:33:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000014", "lbl" : "particulate organic nitrogen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Particulate organic matter which is composed primarily of nitrogen." }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-04-30T18:33:45Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000015", "lbl" : "carbon sequestration process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which atmospheric carbon dioxide is captured and stored.", "xrefs" : [ "https://www.usgs.gov/faqs/what-carbon-sequestration?qt-news_science_products=0#qt-news_science_products" ] }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-07T23:28:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000016", "lbl" : "biotic carbon sequestration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A carbon sequestration process during which atmospheric carbon dioxide is captured and stored by biological processes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Biosequestration" ] }, "subsets" : [ "\"envoNceas\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-07T23:33:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000017", "lbl" : "geological carbon sequestration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A carbon sequestration process during which carbon dioxide is stored in underground geological formations.", "xrefs" : [ "https://www.usgs.gov/faqs/what-s-difference-between-geologic-and-biologic-carbon-sequestration?qt-news_science_products=0#qt-news_science_products" ] }, "subsets" : [ "\"envoNceas\"" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "abiotic carbon sequestration" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-07T23:33:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_04000018", "lbl" : "carbon sequestration by the ocean carbonate system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A carbon sequestration process during which carbon dioxide is stored in the carbonate system of an ocean.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ocean_storage_of_carbon_dioxide" ] }, "subsets" : [ "\"envoNceas\"" ], "xrefs" : [ { "val" : "SDGIO:00010072" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1264-1166" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2019-06-11T20:49:49Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105002", "lbl" : "thermoplasticity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A disposition inhering in a bearer by virtue of that bearer's ability to, repeatedly, become plastic on heating and harden again on cooling.", "xrefs" : [ "https://www.lexico.com/en/definition/thermoplastic", "https://www.merriam-webster.com/dictionary/thermoplastic" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "termoplasticità" }, { "pred" : "hasExactSynonym", "val" : "熱塑性" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-27T09:10:14Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105003", "lbl" : "thermoplastic material", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental material which is capable of, repeatedly, becoming plastic when heated and hardening again when cooled.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermoplastic", "https://www.lexico.com/en/definition/thermoplastic" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-27T09:45:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105004", "lbl" : "thermosetting disposition", "type" : "CLASS", "meta" : { "definition" : { "val" : "A disposition which inheres in materials capable of becoming rigid when cured by heating.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermosetting_polymer" ] }, "subsets" : [ "\"envoPlastics\"@zh" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "熱固性" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-27T13:46:52Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105005", "lbl" : "thermoset polymer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A polymer which has been irreversibly hardened by heat-induced curing.", "xrefs" : [ "https://en.wikipedia.org/wiki/Thermosetting_polymer" ] }, "comments" : [ "Prior to curing, thermoset materials often occur as a soft solid or viscous liquid prepolymer or resin. In the literature, those are often referred to thermosetting resins.\nDuring curing process, well-defined and irreversible chemical networks form in three dimensions thus giving the thermosets a strong and rigid structure that can be added to other materials to increase strength." ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "thermoset material" }, { "pred" : "hasExactSynonym", "val" : "thermoset" }, { "pred" : "hasExactSynonym", "val" : "thermoset plastic" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-27T13:51:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105006", "lbl" : "piece of plastic foam", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which has a matrix- or sponge-like structure with numerous, hollow internal spaces.", "xrefs" : [ "https://doi.org/10.1016/B978-185617431-2/50011-6", "https://doi.org/10.1533/9780857093967.2.309" ] }, "comments" : [ "Depending on the type of plastic used and the organisation of the foam, a piece of plastic foam can show elastic properties (even if the plastic it is made out of does not have elastic properties)." ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Plastikschaumstück" }, { "pred" : "hasExactSynonym", "val" : "Schaumstoffstück" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-04T13:42:05Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105007", "lbl" : "plastic film", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which is flexible, thin, and planar.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "comments" : [ "The edge can be either smooth or angular." ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Plastikfolie" }, { "pred" : "hasExactSynonym", "val" : "pellicola di plastica" }, { "pred" : "hasExactSynonym", "val" : "película de plástico" }, { "pred" : "hasNarrowSynonym", "val" : "Kunststofffolie" }, { "pred" : "hasRelatedSynonym", "val" : "plastic membrane" }, { "pred" : "hasRelatedSynonym", "val" : "plastic sheet" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-04T13:58:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105008", "lbl" : "plastic fragment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which 1) is hard, 2) has an irregular shape, and 3) has broken off of a larger piece of plastic.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "comments" : [ "To avoid ambiguity, we are being stricter with the \"has broken off of a larger piece of plastic\" aspect compared to the GESAMP report, which originally stated \"having appearance of being broken down from a larger piece of litter\"." ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Plastikfragment" }, { "pred" : "hasExactSynonym", "val" : "fragmento de plástico" }, { "pred" : "hasExactSynonym", "val" : "frammento di plastica" }, { "pred" : "hasExactSynonym", "val" : "plastic flake" }, { "pred" : "hasExactSynonym", "val" : "plastic granule" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-04T14:37:37Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105009", "lbl" : "plastic line", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which is linear and flexible.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "plastic fibre" }, { "pred" : "hasExactSynonym", "val" : "plastic filament" }, { "pred" : "hasExactSynonym", "val" : "plastic strand" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-04T14:40:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105010", "lbl" : "plastic pellet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which is 1) hard, 2) has a smooth external surface, and 3) has a roughly spherical or granular shape.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mermaid's tears" }, { "pred" : "hasExactSynonym", "val" : "pellet de plástico" }, { "pred" : "hasExactSynonym", "val" : "pellet di plastica" }, { "pred" : "hasExactSynonym", "val" : "resin bead" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-04T14:42:15Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105011", "lbl" : "water column", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid astronomical body part which 1) vertically spans a water body and 2) has fiat boundaries approximating a columnar shape.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/water%20column" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Wassersäule" }, { "pred" : "hasExactSynonym", "val" : "colonna d'acqua" }, { "pred" : "hasExactSynonym", "val" : "columna de agua" }, { "pred" : "hasExactSynonym", "val" : "水層" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-05T12:26:45Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105012", "lbl" : "biota", "type" : "CLASS", "meta" : { "definition" : { "val" : "A collection of organisms which inhabits the same region, ecosystem, or time period.", "xrefs" : [ "https://www.lexico.com/definition/biota" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Biota" }, { "pred" : "hasExactSynonym", "val" : "biota" }, { "pred" : "hasExactSynonym", "val" : "biota" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This term is also requested on the PCO. Once it is added in PCO we will obsolete it in ENVO and replace it with the PCO terms." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-05T12:32:21Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105013", "lbl" : "marine biota", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biota which inhabits a marine ecosystem.", "xrefs" : [ "https://en.wikipedia.org/wiki/Marine_life" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Meeresbiota" }, { "pred" : "hasExactSynonym", "val" : "biota marino" }, { "pred" : "hasExactSynonym", "val" : "biota marino" }, { "pred" : "hasExactSynonym", "val" : "marine life" }, { "pred" : "hasExactSynonym", "val" : "ocean life" }, { "pred" : "hasExactSynonym", "val" : "sea life" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This term is also requested on the PCO. Once it is added in PCO we will obsolete it in ENVO and replace it with the PCO terms." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-05T12:34:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105014", "lbl" : "biodegradation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biological process during which a material entity is broken down.", "xrefs" : [ "https://doi.org/10.1351%2FPAC-REC-10-12-04" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Biodegradation" }, { "pred" : "hasExactSynonym", "val" : "Biologischer Abbauprozess" }, { "pred" : "hasExactSynonym", "val" : "biodegradación" }, { "pred" : "hasExactSynonym", "val" : "biodegradazione" }, { "pred" : "hasExactSynonym", "val" : "生物分解" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-06T12:15:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105015", "lbl" : "biodegradation of plastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biodegradation process during which plastic is broken down.", "xrefs" : [ "https://doi.org/10.1016/j.matpr.2020.06.096" ] }, "comments" : [ "Biodegradation of plastic will lead to reduce molecular weight of that plastic." ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Biologischer Plastikabbauprozess" }, { "pred" : "hasExactSynonym", "val" : "biodegradación del plástico" }, { "pred" : "hasExactSynonym", "val" : "biodegradazione della plastica" }, { "pred" : "hasExactSynonym", "val" : "biological degradation of plastics" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-06T12:17:43Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105016", "lbl" : "foamed plastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plastic which has a matrix- or sponge-like structure with numerous, hollow internal spaces.", "xrefs" : [ "https://doi.org/10.1016/B978-185617431-2/50011-6", "https://doi.org/10.1533/9780857093967.2.309" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cellular polymers" }, { "pred" : "hasBroadSynonym", "val" : "expanded polymers" }, { "pred" : "hasExactSynonym", "val" : "geschäumter Kunststoff" }, { "pred" : "hasExactSynonym", "val" : "plastic foam" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T12:26:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105019", "lbl" : "quality of a foam", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality which inheres in a liquid or solid bearer by virtue of that bearer trapping a gas in a colloidal suspension throughout its volume.", "xrefs" : [ "https://en.wikipedia.org/wiki/Foam" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This term is also requested on the PATO. Once it is added in PATO we will obsolete it in ENVO and replace it with the PATO terms." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-11T11:07:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105020", "lbl" : "ingestion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A feeding behavior during which material is taken into the body of an organism.", "xrefs" : [ "https://en.wikipedia.org/wiki/Ingestion" ] }, "comments" : [ "Note that ingestion is not limited to materials which provide nutrition to an organism; indigestible or otherwise biologically inaccessible particles may also be ingested by organisms. Ingestion is also not limited to organisms with a mouth and digestive tract, as single-celled organisms like amoebae ingest material with their cell membrane.\nhttps://github.com/EnvironmentOntology/envo/pull/1153" ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "(Nahrungs)aufnahme" }, { "pred" : "hasExactSynonym", "val" : "Ingestion" }, { "pred" : "hasExactSynonym", "val" : "ingestione" }, { "pred" : "hasExactSynonym", "val" : "ingestión" }, { "pred" : "hasExactSynonym", "val" : "攝食" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-11T14:09:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105021", "lbl" : "adsorption", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which material adheres to a solid or liquid surface.", "xrefs" : [ "https://en.wikipedia.org/wiki/Adsorption", "https://www.merriam-webster.com/dictionary/adsorption" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Adsorption" }, { "pred" : "hasExactSynonym", "val" : "adsorbimento" }, { "pred" : "hasExactSynonym", "val" : "adsorción" }, { "pred" : "hasExactSynonym", "val" : "吸附" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-11T14:20:33Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105022", "lbl" : "fouling", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material accumulation process during which material builds up on a solid surface such that a function of that surface, or the object it is a part of, is impaired.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fouling", "https://www.corrosionpedia.com/definition/540/fouling" ] }, "comments" : [ "Following BFO:function semantics, this suggests that the functions of the object of which the surface is a part are affected in their realisation in one or more processes." ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Fouling" }, { "pred" : "hasExactSynonym", "val" : "incrostazione" }, { "pred" : "hasExactSynonym", "val" : "incrustación" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-11T19:24:44Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105023", "lbl" : "biofouling", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fouling process during which biological matter accumulates on a solid surface.", "xrefs" : [ "https://doi.org/10.1098/rsta.2011.0502" ] }, "comments" : [ "The biological matter can be microscale (e.g. biofilms created by microorganism) and macroscale (created by macroorganism)." ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bio-incrostazione" }, { "pred" : "hasExactSynonym", "val" : "bio-incrustación" }, { "pred" : "hasExactSynonym", "val" : "biological fouling" }, { "pred" : "hasNarrowSynonym", "val" : "Makrofouling" }, { "pred" : "hasNarrowSynonym", "val" : "Mikrofouling" }, { "pred" : "hasRelatedSynonym", "val" : "Bewuchs" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-11T19:26:55Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105024", "lbl" : "adhesion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system process during which two dissimilar materials attach to one another.", "xrefs" : [ "https://en.wikipedia.org/wiki/Adhesion", "https://www.biolinscientific.com/blog/what-is-adhesion" ] }, "comments" : [ "The attachment is usually firm, and several mechanisms (mechanical, chemical, dispersive, diffusive, and electrostatic) have been proposed.\n\nThis class is related to - but distinct from - those classes listed below:\nhttp://purl.obolibrary.org/obo/NCIT_C17597\nhttp://purl.obolibrary.org/obo/GO_0022610\nhttp://purl.obolibrary.org/obo/APO_0000288" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We'll relocate this in a hierarchy of similar processes later. We'll add different types of adhesion (mechanical, chemical, dispersive, diffusive, and electrostatic) as subclasses in later revisions." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-12T19:18:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105025", "lbl" : "cohesion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system process during which the molecules of similar materials are electrically attracted to one another, leading to the formation and maintenance of a microscopic structure holding the materials together.", "xrefs" : [ "https://en.wikipedia.org/wiki/Cohesion_(chemistry)" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-12T19:22:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105026", "lbl" : "granule of plastic foam", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic foam which has a near-spherical or granular shape.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "comments" : [ "These granules are usually white or opaque but can be any color." ], "subsets" : [ "\"envoPlastics\"@en" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-13T14:28:02Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105027", "lbl" : "fragmentation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system process during which a material entity breaks into pieces or parts.", "xrefs" : [ "https://www.oxfordlearnersdictionaries.com/definition/english/fragmentation?q=fragmentation" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Fragmentierung" }, { "pred" : "hasExactSynonym", "val" : "fragmentación" }, { "pred" : "hasExactSynonym", "val" : "frammentazione" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-13T14:48:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105028", "lbl" : "fragmentation due to weathering", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fragmentation process which is caused by weathering." }, "comments" : [ "Some example of materials that undergo fragmentation due to weathering are rocks and plastics." ], "subsets" : [ "\"envoPlastics\"@en" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-13T14:48:17Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105101", "lbl" : "plastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environnmental material which 1) is composed primarily of polymers with high molecular mass and 2) once deformed does not spontaneously return to its original shape.", "xrefs" : [ "https://readanddigest.com/what-is-plastic/", "https://www.britannica.com/science/plastic#ref82461", "https://www.lexico.com/definition/plastic" ] }, "comments" : [ "\"High molecular mass\" can be ambiguous as it does not set a threshold for what is considered \"high\". Here we make no commitment to a threshold." ], "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Plastik" }, { "pred" : "hasExactSynonym", "val" : "plastica" }, { "pred" : "hasExactSynonym", "val" : "塑膠" }, { "pred" : "hasNarrowSynonym", "val" : "Kunststoff" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-07T14:40:26Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105102", "lbl" : "megaplastic particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which is greater than 1 metre in its longest dimension.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "comments" : [ "This classification is based on the thresholds detailed in GESAMP report # 99 on recommendation from the SDG 14 indicator team." ], "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-08T13:55:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105103", "lbl" : "macroplastic particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which is between 25 and 1000 millimetres in its longest dimension.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "comments" : [ "This classification is based on the thresholds detailed in GESAMP report # 99 on recommendation from the SDG 14 indicator team. While the definition is in accordance with the common use of this term (as per GESAMP report # 99), alternative size classifications exist and are detailed in the same report. An alternative classification is a piece of plastic which is between 25 and 50 millimetres in its longest dimension." ], "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-08T14:01:58Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105104", "lbl" : "mesoplastic particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which is between 5 and 25 millimetres in its longest dimension.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "comments" : [ "This classification is based on the thresholds detailed in GESAMP report # 99 on recommendation from the SDG 14 indicator team. While the definition is in accordance with the common use of this term (as per GESAMP report # 99), alternative size classifications exist. Alternatives classifications are a piece of plastic which is less than 25 millimetres in its longest dimension, or a piece of plastic which is between 1 and 25 millimetres in its longest dimension." ], "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-08T14:04:53Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105105", "lbl" : "nanoplastic particle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A piece of plastic which has a diameter less than 1 micrometre.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "comments" : [ "This classification is based on the thresholds detailed in GESAMP report # 99 on recommendation from the SDG 14 indicator team. While the definition is in accordance with the common use of this term (as per GESAMP report # 99), alternative size classifications exist. An alternative classification is a piece of plastic which has a diameter less than 100 nanometres. The GESAMP report states that it assumes a spherical shape for this size classification, which was understood to mean the generalised form of diameter, i.e. the largest distance between two points belonging to an object." ], "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-08T14:07:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105106", "lbl" : "plastisphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an astronomical body which includes, as parts, all the entities which are composed primarily of plastic and which are within the gravitational sphere of influence of that body.", "xrefs" : [ "https://doi.org/10.3390/environments7100073" ] }, "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Plastiksphäre" }, { "pred" : "hasExactSynonym", "val" : "plastisfera" }, { "pred" : "hasExactSynonym", "val" : "plastisfera" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-04-27T08:42:44Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105107", "lbl" : "marine anthropogenic litter", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anthropogenic litter which is present in the marine environment.", "xrefs" : [ "http://www.gesamp.org/publications/guidelines-for-the-monitoring-and-assessment-of-plastic-litter-in-the-ocean" ] }, "comments" : [ "Very large objects that are discarded are typically considered \"debris\", but this term is loosely defined and there are no standard size classifications which can be used to distinguish debris from litter." ], "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "海洋廢棄物" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-04T14:07:44Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105108", "lbl" : "littering", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environmental process during which waste is improperly disposed of into the environment.", "xrefs" : [ "https://doi.org/10.3390/environments7100073" ] }, "comments" : [ "Very large objects that are discarded are typically considered \"debris\", but this term is loosely defined and there are no standard size classifications which can be used to distinguish debris from litter." ], "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-04T14:13:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105109", "lbl" : "litter role", "type" : "CLASS", "meta" : { "definition" : { "val" : "A role which 1) inheres in a material entity 2) is realised when that entity is discarded outside waste management systems by humans or their technologies." }, "subsets" : [ "\"envoPlastics\"@en" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-05T14:15:43Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105110", "lbl" : "manufactured plastisphere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plastisphere which is composed primarily of manufactured plastic." }, "subsets" : [ "\"envoPlastics\"@en" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-06T12:41:22Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105111", "lbl" : "natural plastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "Plastic which is composed primarily of polymers produced by processes whose agents do not include humans or their technologies." }, "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The corresponding subclass axiom will be added in the second phase of this project." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T09:09:37Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105112", "lbl" : "synthetic plastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plastic which is composed primarily of polymers produced by a manufacturing process." }, "subsets" : [ "\"envoPlastics\"", "\"envoPolar\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "manufactured plastic" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The corresponding subclass axiom will be added in the second phase of this project." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T09:12:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105113", "lbl" : "fishing", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned environmental usage process during which any number of fish are caught by humans or their technologies.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fishing", "https://www.lexico.com/definition/fishing" ] }, "subsets" : [ "\"envoPlastics\"@en" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "angeln" }, { "pred" : "hasExactSynonym", "val" : "fischen" }, { "pred" : "hasExactSynonym", "val" : "pesca" }, { "pred" : "hasExactSynonym", "val" : "pesca" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T17:56:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105114", "lbl" : "ghost fishing", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anthropogenic environmental process during which abandoned, lost, or discarded fishing gear attracts and entangles organisms." }, "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "While not driven by humans directly, ghost fishing is a downstream result of their intentional actions." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T18:00:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105115", "lbl" : "fishing gear", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product which is used for fishing.", "xrefs" : [ "https://en.wikipedia.org/wiki/Fishing_tackle" ] }, "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Angelausrüstung" }, { "pred" : "hasExactSynonym", "val" : "Angelzubehör" }, { "pred" : "hasExactSynonym", "val" : "Fischereiausrüstung" }, { "pred" : "hasExactSynonym", "val" : "attrezzo di pesca" }, { "pred" : "hasExactSynonym", "val" : "equipo de pesca" }, { "pred" : "hasExactSynonym", "val" : "fishing tackle" }, { "pred" : "hasExactSynonym", "val" : "漁具" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T18:01:58Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105116", "lbl" : "discarded fishing gear", "type" : "CLASS", "meta" : { "definition" : { "val" : "Abandoned fishing gear which was intentionally left unmaintained and uncontrolled by its custodian.", "xrefs" : [ "https://www.oxfordlearnersdictionaries.com/definition/english/discard_1" ] }, "comments" : [ "In the literature, including GESAMP Report #99, this term is often referenced as part of abandoned, lost or otherwise discarded fishing gear (ALDFG)." ], "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "entsorgte Angelausrüstung" }, { "pred" : "hasBroadSynonym", "val" : "equipo de pesca desechado" }, { "pred" : "hasExactSynonym", "val" : "attrezzo di pesca scartato" }, { "pred" : "hasExactSynonym", "val" : "weggeworfene Angelausrüstung" }, { "pred" : "hasExactSynonym", "val" : "weggeworfene Fischerreiausrüstung" }, { "pred" : "hasExactSynonym", "val" : "weggeworfenes Angelzubehör" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "In the future some role semantics for \"abandoned\", \"lost\", and \"discarded\" could be set up." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T18:06:28Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105117", "lbl" : "abandoned fishing gear", "type" : "CLASS", "meta" : { "definition" : { "val" : "Fishing gear which is not under the control of or maintained by its custodian.", "xrefs" : [ "https://www.merriam-webster.com/dictionary/abandoned" ] }, "comments" : [ "In the literature, including GESAMP Report #99, this term is often referenced as part of abandoned, lost or otherwise discarded fishing gear (ALDFG)." ], "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "In the future some role semantics for \"abandoned\", \"lost\", and \"discarded\" could be set up." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T18:11:07Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105118", "lbl" : "lost fishing gear", "type" : "CLASS", "meta" : { "definition" : { "val" : "Abandoned fishing gear which was unintentionally left unmaintained and uncontrolled by its custodian.", "xrefs" : [ "https://www.oxfordlearnersdictionaries.com/definition/english/lost_1?q=lost" ] }, "comments" : [ "In the literature, including GESAMP Report #99, this term is often referenced as part of abandoned, lost or otherwise discarded fishing gear (ALDFG)." ], "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "attrezzo di pesca perso" }, { "pred" : "hasExactSynonym", "val" : "equipo de pesca perdido" }, { "pred" : "hasExactSynonym", "val" : "verschollene Angelausrüstung" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "In the future some role semantics for \"abandoned\", \"lost\", and \"discarded\" could be set up." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T18:13:31Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105119", "lbl" : "weathering", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material transformation process during which the properties of a material are changed as a result of in situ exposure to atmospheric processes.", "xrefs" : [ "https://en.wikipedia.org/wiki/Weathering", "https://www.britannica.com/science/weathering-geology" ] }, "comments" : [ "The term \"weathering\" should not be confused with \"erosion\", which is the removal and transport of environmental material away from a site via exogenic processes." ], "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Verwitterung" }, { "pred" : "hasExactSynonym", "val" : "meteorización" }, { "pred" : "hasExactSynonym", "val" : "meteorizzazione" }, { "pred" : "hasExactSynonym", "val" : "風化(作用)" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T18:39:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105120", "lbl" : "entanglement process", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environmental system process during which material entities become entrapped, wrapped, twisted, entwined, or otherwise caught in one another.", "xrefs" : [ "https://www.lexico.com/definition/entangle" ] }, "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "Verfangen" }, { "pred" : "hasBroadSynonym", "val" : "Verhedderung" }, { "pred" : "hasBroadSynonym", "val" : "Verstrickung" }, { "pred" : "hasExactSynonym", "val" : "proceso de enredamiento" }, { "pred" : "hasExactSynonym", "val" : "processo di impigliamento" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T18:43:55Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105121", "lbl" : "entanglement of organisms in marine debris", "type" : "CLASS", "meta" : { "definition" : { "val" : "An entanglement process during which organisms become entrapped in anthropogenic marine debris." }, "comments" : [ "Examples of marine debris include boating gear, or fishing gear (active or derelict). Marine debris may be in water or on land." ], "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We've added anthropogenic litter as an input, as the threshold between litter and debris is ambigious. See the notes on anthropogenic litter" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-07T18:47:14Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105122", "lbl" : "biopolymer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A polymer which is the output of a biological process.", "xrefs" : [ "http://purl.obolibrary.org/obo/NCIT_C73478" ] }, "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-10T10:54:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105123", "lbl" : "synthetic polymer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A polymer which is the output of a manufacturing process.", "xrefs" : [ "http://purl.obolibrary.org/obo/NCIT_C82130" ] }, "subsets" : [ "\"envoPlastics\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-10T10:56:03Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105124", "lbl" : "coastal 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: "A manufacturing process which includes plastic as one of its specified outputs.", "xrefs" : [ "https://en.wikipedia.org/wiki/Plastics_industry" ] }, "subsets" : [ "\"envoPlastics\"" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Plastikherstellung" }, { "pred" : "hasExactSynonym", "val" : "plastic production" }, { "pred" : "hasExactSynonym", "val" : "producción de plástico" }, { "pred" : "hasExactSynonym", "val" : "produzione di plastica" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-2996-719X" }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-8166-0486" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0003-1072-8081" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-05-11T08:17:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105126", "lbl" : "weathering of plastic", "type" : 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"http://purl.obolibrary.org/obo/ENVO_06105203", "lbl" : "water table depth", "type" : "CLASS", "meta" : { "definition" : { "val" : "An elevation which inheres in a water table by virture of its vertical distance from a land surface." }, "comments" : [ "While called \"depth\", this is not the depth of the water table but rather how far it is below a reference plane, usually the soil surface. 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"soil albedo", "type" : "CLASS", "meta" : { "definition" : { "val" : "Albedo which inheres in soil." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-20T00:53:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105233", "lbl" : "dry soil albedo", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil albedo which inheres in dry soil." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-20T00:55:55Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105234", "lbl" : "moist soil albedo", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil albedo which inheres in moist soil." }, "comments" : [ "This could be axiomatised with PATO:wet, but that isn't likely to map neatly to \"moist\"." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-20T00:58:06Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105236", "lbl" : "exchangeable ion", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ion which is 1) adsorbed onto the surfaces of materials with an opposing charge, 2) are readily displaced by other ions, 3) may be displaced and absorbed by organisms.", "xrefs" : [ "https://www.encyclopedia.com/earth-and-environment/ecology-and-environmentalism/environmental-studies/exchangeable-ions", "https://lawr.ucdavis.edu/classes/ssc219/biogeo/exchca.htm" ] }, "comments" : [ "The exchangeable ion pool is the dominant storage pool for calcium, magnesium, and potassium ions. 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Soil CEC is measured in millequivalents per 100 grams of soil (meq/100g). A meq is the number of ions which total a specific quantity of electrical charges. Common soil cations include: calcium (Ca++), magnesium (Mg++), potassium (K+), ammonium (NH4+), hydrogen (H+) and sodium (Na+)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CEC" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-2627-0696" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-22T16:39:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105241", "lbl" : "soil drainage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A drainage process during which liquid water is transported away from soil.", "xrefs" : [ "https://doi.org/10.1016/B0-12-348530-4/00352-0" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-22T17:12:04Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105242", "lbl" : "basic cation exchange capacity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cation exchange capacity which inheres in an environmental material by virtue of the material's ability to adsorb basic exchangeable cations.", "xrefs" : [ "https://extension.uga.edu/publications/detail.html?number=C1040" ] }, "comments" : [ "The basic cation exchange capacity is often expressed as the percentage of the total exchangeable cations which are basic, known as the percentage base saturation. The percentage base saturation is expressed as follows: %BS = [(Ca2+ + Mg2+ + K+)/CEC] × 100" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "BS" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-22T17:32:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105265", "lbl" : "net shortwave radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Energy which has been absorbed by an astronomical body or its parts following that body's irradiation by shortwave radiation from a star.", "xrefs" : [ "http://disc.gsfc.nasa.gov/hydrology/data-holdings/parameters/net_shrtwave_rad.shtml" ] }, "comments" : [ "Despite the label, this is not a shortwave radiation process, but the energy that is absorbed from one. This term is used to describe, e.g., the energy absorbed from insolation and stored by the Earth. Gross shortwave radiation would also include shortwave radiation reflected back into space by clouds, aerosols, and solid surfaces with high albedo." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "absorbed shortwave radiation" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-23T03:51:41Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105266", "lbl" : "soil layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer that is composed primarily of soil." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8461-9745" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105267", "lbl" : "soil profile characterization", "type" : "CLASS", "meta" : { "definition" : { "val" : "A planned process during which a soil profile is examined and the soil horizons that compose it are described.", "xrefs" : [ "http://www.ctahr.hawaii.edu/mauisoil/a_profile.aspx" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-23T04:10:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105268", "lbl" : "treated wastewater", "type" : "CLASS", "meta" : { "definition" : { "val" : "Waste water which was converted into an effluent that can be either returned to the water cycle with minimal environmental issues or reused.", "xrefs" : [ "https://www.usgs.gov/special-topics/water-science-school/science/wastewater-treatment-water-use" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-23T04:16:42Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105269", "lbl" : "desalinated water", "type" : "CLASS", "meta" : { "definition" : { "val" : "Saline water from which minerals have been removed to produce fresh water suitable for human consumption or irrigation.", "xrefs" : [ "https://www.usgs.gov/special-topics/water-science-school/science/desalination" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-23T04:26:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105271", "lbl" : "soil texture", "type" : "CLASS", "meta" : { "definition" : { "val" : "Texture which inheres in soil." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0002-2627-0696" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T21:49:12Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105272", "lbl" : "loamy sand", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soil which is primarily composed of sand with silt and clay in progressively smaller proportions.", "xrefs" : [ "https://www.fao.org/fishery/docs/CDrom/FAO_Training/FAO_Training/General/x6706e/x6706e06.htm" ] }, "comments" : [ "Some authorities consider this a soil type, composed of 70-86% of sand, 0-30% of silt and 0-15% of clay. Others consider this a soil material that contains at the upper limit 85 to 90% sand, and the percentage of silt plus 1.5 times the percentage of clay is not less than 15, at the lower limit it contains not less than 70 to 85% sand, and the percentage of silt plus twice the percentage of clay does not exceed 30." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:01:51Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105273", "lbl" : "fine sand", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sand which is composed primarily of fine particles." }, "comments" : [ "Thresholds for what particle size is considered \"fine\" vary by region and authority, as well as the tolerance for proportions of other particle sizes." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0002-2627-0696" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:04:18Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105274", "lbl" : "sandy loam", "type" : "CLASS", "meta" : { "definition" : { "val" : "Loam which has a high proportion of sand in its composition." }, "comments" : [ "Some authorities consider sandy loam to be a soil composed of 50-70% sand, 0-50% silt, and 0-20% clay. Others, a soil material that contains either 20% or less clay, with a percentage of silt plus twice the percentage of clay that exceeds 30, and 52% or more sand; or less than 7% clay, less than 50% silt, and between 43% and 52% sand." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:08:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105275", "lbl" : "silty loam", "type" : "CLASS", "meta" : { "definition" : { "val" : "Loam which has a high proportion of silt in its composition." }, "comments" : [ "Some authorities consider silt loam to be a soil composed of 20-50% of sand, 74-88% silt and 0-27% of clay.", "USDA textural classes of soils" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0002-2627-0696" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:10:33Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105276", "lbl" : "sandy clay loam", "type" : "CLASS", "meta" : { "definition" : { "val" : "Clay loam which has a high proportion of sand in its composition." }, "comments" : [ "Some authorities consider sandy clay loam to be a soil composed of 45-80% sand, 0-28% silt, and 20-35% clay." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:11:57Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105277", "lbl" : "clay loam", "type" : "CLASS", "meta" : { "definition" : { "val" : "Loam which has a high proportion of clay in its composition." }, "comments" : [ "Some authorities consider clay loam to be a soil composed of 20-45% sand, 15-52% silt, and 27 to 40% clay." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Interestingly, some instances of this class may not actually conform to the definition of loam, by having roughly unequal proportions of sand and silt and quite a large proportion of clay." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:12:30Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105278", "lbl" : "silty clay loam", "type" : "CLASS", "meta" : { "definition" : { "val" : "Clay loam which has a high proportion of silt in its composition." }, "comments" : [ "Some authorities consider silty clay loam to be a soil composed of 0-20% of sand, 40-73 of silt and 27-40% of clay." ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:13:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105279", "lbl" : "sandy clay", "type" : "CLASS", "meta" : { "definition" : { "val" : "Clay which has a high proportion of sand in its composition." }, "comments" : [ "Some authorities consider sandy clay to be a soil composed of 45-65% of sand, 0-20% of silt and 35-55% of clay. If the proportion of sand exceeds that of clay, it is unclear whether this is still considered clay (due to other properties) or whether a new class \"clay sand\" should be created." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "If this is a soil (in which case the differntia must be made clear) it should be moved (or a new class created) and labelled 'sandy clay soil'." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:13:44Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105280", "lbl" : "silty clay", "type" : "CLASS", "meta" : { "definition" : { "val" : "Clay which has a high proportion of silt in its composition." }, "comments" : [ "Some authorities consider this a soil composed of 0-20% of sand, 40-60% of silt and 40-60% of clay. If the proportion of silt exceeds that of clay, it is unclear whether this is still considered clay (due to other properties) or whether a new class \"clay silt\" should be created." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "If this is a soil (in which case the differntia must be made clear) it should be moved (or a new class created) and labelled 'silty clay soil'." }, { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2021-12-26T22:14:11Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105300", "lbl" : "wastewater treatment process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A recycling process during which wastewater is treated" }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8461-9745" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105301", "lbl" : "desalination process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A recycling process during which the dissolved mineral salts in water are removed" }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8461-9745" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105302", "lbl" : "field capacity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration of liquid water in soil arrived at after water which is not retained by the soil has drained away.", "xrefs" : [ "https://en.wikipedia.org/wiki/Field_capacity", "https://www.civilengineeringterms.com/engineering-hydrology/field-capacity-permanent-wilting-point-available-water/" ] }, "comments" : [ "The determination of field capacity is variable and multiple methods to do so exist. Even in a given soil, the value of field capacity is variable, but serves as a useful measure of its water-holding capacity. Field capacity is often characterized by measuring water content after wetting a soil profile, covering it (to prevent evaporation) and monitoring the change soil moisture in the profile. Water content when the rate of change is relatively small is indicative of when drainage ceases and is called field capacity, it is also termed drained upper limit (DUL). This measure of field capacity is well-correlated with field capacity determined by applying −33 kPa (or −0.33 bar) of hydraulic head or suction pressure (less in sandy soils) to a portion of soil and subsequently measuring the bulk water content it retains.Field capacity is usually naturally arrived at 2–3 days after rain or irrigation in pervious soils of uniform structure and texture." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "drained upper limit" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/contributor", "val" : "https://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0002-8461-9745" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105303", "lbl" : "permanent wilting point", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration of liquid water in soil at or below which a plant will wilt and no longer recover its turgidity when placed in a water saturated atmosphere.", "xrefs" : [ "https://www.civilengineeringterms.com/engineering-hydrology/field-capacity-permanent-wilting-point-available-water/", "https://en.wikipedia.org/wiki/Permanent_wilting_point" ] }, "comments" : [ "The type of plant and soil are sources of variation for values of this concentration. The physical definition of the wilting point is conventionally measured as the water content at −1,500 kPa (−15 bar) of suction pressure, or negative hydraulic head." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "PWP" }, { "pred" : "hasExactSynonym", "val" : "wilting point" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0002-8461-9745" }, { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-6284-4821" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_06105304", "lbl" : "water-holding capacity of soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "Water-holding capacity which inheres in some soil.", "xrefs" : [ "https://www.canr.msu.edu/news/why_is_soil_water_holding_capacity_important" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "soil water-holding capacity" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0002-8461-9745" }, { "pred" : "http://purl.org/dc/terms/creator", "val" : "https://orcid.org/0000-0001-6284-4821" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_08000001", "lbl" : "axilla skin environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment that is determined by an axilla skin.", "xrefs" : [ "GOC:TermGenie" ] }, "subsets" : [ "\"envoMeo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "TermGenie" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-12-15T22:32:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_08000002", "lbl" : "mouth environment", "type" : "CLASS", "meta" : { "definition" : { "val" : "An environment that is determined by a mouth.", "xrefs" : [ "GOC:TermGenie" ] }, "subsets" : [ "\"envoMeo\"" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "TermGenie" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2015-04-10T23:34:03Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000001", "lbl" : "solubility of carbon atom in environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "The solubility of a carbon atom when measured in environmental material." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "environmental material carbon atom solubility" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000002", "lbl" : "solubility of carbon atom in soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "The solubility of a carbon atom when measured in soil." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "soil carbon atom solubility" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000003", "lbl" : "solubility of carbon atom in water", "type" : "CLASS", "meta" : { "definition" : { "val" : "The solubility of a carbon atom when measured in water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "water carbon atom solubility" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000004", "lbl" : "amount of carbon atom in environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "The amount of a carbon atom when measured in environmental material." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "environmental material carbon atom amount" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000005", "lbl" : "amount of carbon atom in soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "The amount of a carbon atom when measured in soil." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "soil carbon atom amount" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000006", "lbl" : "amount of carbon atom in water", "type" : "CLASS", "meta" : { "definition" : { "val" : "The amount of a carbon atom when measured in water." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "water carbon atom amount" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000007", "lbl" : "concentration of carbon atom in environmental material", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of a carbon atom when measured in environmental material." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "environmental material carbon atom concentration" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000008", "lbl" : "concentration of carbon atom in soil", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of a carbon atom when measured in soil." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "soil carbon atom concentration" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_09000009", "lbl" : "concentration of carbon atom in water", "type" : "CLASS", "meta" : { "definition" : { "val" : "The concentration of a carbon atom when measured in water." }, "synonyms" : [ { "pred" : 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It will also requre new class creation in GO process for deeper semantics." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_1000747", "lbl" : "exudation of carbohydrates", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process in which carbohydrates are transported from the interior of an organism to its surroundings." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Class for testing with marine mucilage." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_1000748", "lbl" : "island formation process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process which results in the formation of an island." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Addressing Issue #268. This top-level class may be converted to an inferred class." } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_1000749", "lbl" : "microcontinental island", "type" : "CLASS", "meta" : { "definition" : { "val" : "An island created when a continent is rifted.", "xrefs" : [ "https://en.wikipedia.org/wiki/Island" ] }, "comments" : [ "\"Examples are Madagascar and Socotra off Africa, the Kerguelen Islands, New Caledonia, New Zealand, and some of the Seychelles.\" https://en.wikipedia.org/wiki/Island" ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_1000750", "lbl" : "depositional island", "type" : "CLASS", "meta" : { "definition" : { "val" : "An island formed by deposition of solid material such as sand or small rocks where a water current loses some of its carrying capacity.", "xrefs" : [ "https://en.wikipedia.org/wiki/Island" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_1000751", "lbl" : "barrier island", "type" : "CLASS", "meta" : { "definition" : { "val" : "An island formed by the accumulation of sand deposited by sea currents on a continental shelves", "xrefs" : [ "https://en.wikipedia.org/wiki/Island" ] } } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_2000000", "lbl" : "chemical product", "type" : "CLASS", "meta" : { "definition" : { "val" : "A manufactured product that is some mixture of chemicals created through some chemical engineering process", "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-27T10:32:07Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_2000001", "lbl" : "creosote", "type" : "CLASS", "meta" : { "definition" : { "val" : "The portion of chemical products obtained by the distillation of a tar that remains heavier than water, notably useful for its anti-septic and preservative properties", "xrefs" : [ "https://en.wikipedia.org/wiki/Creosote" ] }, "xrefs" : [ { "val" : "https://en.wikipedia.org/wiki/Creosote" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-27T10:35:14Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_2000002", "lbl" : "industrial wastewate treatment plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wastewater treatment plant that treates industrial wastewater. 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A nest has many functions such as providing a protected living space and water conservation (through controlled condensation).", "xrefs" : [ "https://en.wikipedia.org/wiki/Termite#Nests" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "termite nest" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-27T04:49:24Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ENVO" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_2000007", "lbl" : "biochar", "type" : "CLASS", "meta" : { "definition" : { "val" : "charcoal that is used as a soil amendment.", "xrefs" : [ "https://en.wikipedia.org/wiki/Biochar" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "https://orcid.org/0000-0002-6601-2165" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-11-03T19:28:29Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/ENVO_2000008", "lbl" : "lignite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A soft, brown, combustible, sedimentary rock formed from naturally compressed peat.", "xrefs" : [ "https://en.wikipedia.org/wiki/Lignite" ] }, "comments" : [ "It is considered the lowest rank of coal due to its relatively low heat content. 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Note that this category should avoid items that mention a particular species of fish or shellfish." }, "comments" : [ "SIREN DB annotation:\n* derives from 'skeletal meat part' (http://purl.obolibrary.org/obo/FOODON_03420175)\n " ], "subsets" : [ "\"subset_siren\"" ], "xrefs" : [ { "val" : "SUBSET_SIREN:F15173" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Damion Dooley" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://en.wikipedia.org/wiki/Fish_products" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03315302", "lbl" : "cocoa food product", "type" : "CLASS", "meta" : { "comments" : [ "SIREN DB annotation:\n* derives from 'seed, skin present, germ present' 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Artificially sweetened fruit jelly must contain no less than 55% fruit ingredient by weight." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0209" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400213", "lbl" : "fudge (us cfr)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soft candy prepared by boiling milk, sugar, salt and optional ingredients to the soft-ball stage (238 degrees F.)." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0213" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400231", "lbl" : "margarine (us cfr)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Food product having functional characteristics similar to those of butter; it is in plastic form or liquid emulsion and contains not less than 80% fat whose origin is vegetable or rendered animal carcass fats or a mixture of these as well as other optional ingredients specified by 21 CFR 166.110." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0231" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400257", "lbl" : "fruit or vegetable product (us cfr)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Fruits and vegetables in all forms. [FDA CFSAN 1995]" }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0257" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400289", "lbl" : "USA agency food product type", "type" : "CLASS", "meta" : { "definition" : { "val" : "Food group having common consumption, functional or manufacturing characteristics, e.g. *FRUIT OR VEGETABLE PRODUCT*, *DAIRY PRODUCT*, *CONFECTIONARY*, *PREPARED FOOD PRODUCT*, etc. [FDA CFSAN 1995]" }, "comments" : [ "LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0289" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400293", "lbl" : "soft candy (us cfr)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Candy prepared by cooking a mixture of water, sugars and optional ingredients to a temperature of 250 degrees F. or less." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0293" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400294", "lbl" : "butter product analog (us cfr)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Food product having functional characteristics similar to a butter product; it may be nutritionally equivalent or inferior to the product it purports to resemble." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0294" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "butter substitute" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "butter, imitation" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "imitation butter" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400352", "lbl" : "international agency food product type", "type" : "CLASS", "meta" : { "definition" : { "val" : "Renamed from *PRODUCT TYPE, CODEX ALIMENTARIUS* in LanguaL 2008." }, "comments" : [ "LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0352" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400356", "lbl" : "European Union agency food product type", "type" : "CLASS", "meta" : { "comments" : [ "LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0356" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400361", "lbl" : "agency food product type", "type" : "CLASS", "meta" : { "definition" : { "val" : "An agency food product type is a class of food product defined by an agency or consortium." }, "comments" : [ "This class is designed to hold 3rd party food classification schemes which are being mapped to FoodOn classes using the 'has member' relation. The two hierarchies are not melded into a subclass polyhierarchy because of possible logical inconsistencies in the agency schemes. The hierarchies of agency schemes are as true to their agency representation as possible." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0361" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Damion Dooley" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400643", "lbl" : "Codex Alimentarius classification of food and feed commodities", "type" : "CLASS", "meta" : { "definition" : { "val" : "Codex Alimentarius, Volume 2 - 1993, Section 2: Pesticide Residues in Food.\n\nThe Codex Classification of food and animal feed commodities moving in trade and the description of the various items and groups of food and animal feedstuffs included in the present document have been developed by the Codex Committee on Pesticide Residues. It was first adopted by the 18th Session of the Codex Alimentarius Commission, (1989).\n\nThe Codex Classification includes food commodities and animal feedstuffs for which Codex maximum residue limits will not necessarily be established. The Classification is intended to be as complete a listing of food commodities in trade as possible, classified into groups on the basis of the commodity's similar potential for pesticide residues.\n\nThe Classification may also be appropriate for other purposes such as setting maximum levels for other types of residues or for other contaminants in food. The Codex Classification should be consulted in order to obtain a precise description of the food or animal feed commodities and, especially, in cases where Codex maximum residue limits have been set for groups of food and groups of animal feedstuffs. The Codex Classification is intended to promote harmonization of the terms used to describe commodities which are subject to maximum residue limits and of the approach to grouping commodities with similar potential for residue for which a common group maximum residue limit can be set." }, "comments" : [ "LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0643" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400644", "lbl" : "a. primary food commodities of plant origin (ccpr)", "type" : "CLASS", "meta" : { "comments" : [ "LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0644" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400650", "lbl" : "02 vegetables (ccpr)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Vegetables are foods derived from many different kinds of plants mostly annual and usually cultivated, commonly known by custom and tradition as \"vegetables\".\nIn several countries, some of these commodities grown on large areas are distinguished as \"field crops\" or arable crops e.g. sugar beet. For the sake of convenience in this guide such crops are classified under Type 2 Vegetables.\nExposure to pesticides is dependent on the particular part of the plant used for food and the growing practices.\nVegetables may be consumed in whole or in part and in the form of fresh, dried or processed foods." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0650" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400680", "lbl" : "015 pulses (vd) (ccpr)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Pulses are derived from the mature seeds naturally or artificially dried, of leguminous plants known as beans (dry) and peas (dry).\nThe seeds in the pods are protected from most pesticides applied during the growing season except pesticides which show a systemic action. The dried beans and peas however are often exposed to post-harvest treatments.\nThe dry pulses are consumed after processing or household cooking." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0680" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400777", "lbl" : "eurofir food classification", "type" : "CLASS", "meta" : { "comments" : [ "LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0777" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400801", "lbl" : "seafood or related product (eurofir)", "type" : "CLASS", "meta" : { "definition" : { "val" : "The group includes marine or freshwater fish, molluscs, crustaceans, and other fauna such as reptiles, insects or frogs not in the “Meats” group. The group also includes seafood product analogs and seafood-based sausage or luncheon meat as well as such products as squid ink and clam juice." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0801" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400803", "lbl" : "seafood product (eurofir)", "type" : "CLASS", "meta" : { "definition" : { "val" : "includes fish offal; a food product whose predominant constituent is fish (e.g. dried and salted fish, smoked fish, canned fish, pickled fish, restructured fish and fish analogues, surimi; fish paste, pâté)." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0803" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400840", "lbl" : "beverage (non-milk) (eurofir)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Alcoholic or non-alcoholic beverage; excludes milk and milk-based beverages." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0840" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400842", "lbl" : "non alcoholic beverage (eurofir)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Beverage containing no more than 0.5% alcohol; it may be flavoured, sweetened or carbonated; includes soft drinks and steeped beverages; excludes milk in all forms, fruit juices and vegetable juices." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0842" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400845", "lbl" : "coffee, tea, cocoa or infusion (eurofir)", "type" : "CLASS", "meta" : { "definition" : { "val" : "Beverage prepared by extracting flavour and other components from food sources by percolation and/or immersion in water, usually at near-boiling temperature. The group includes coffee (e.g. instant coffee, coffee and chicory essence), tea, herbal tea (e.g. green tea, black tea, tisane), cocoa beverage and beverage powder." }, "comments" : [ "LanguaL curation note: Renamed from *COFFEE, TEA, COCOA (EUROFIR)* (LanguaL 2010)." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0845" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "infusion" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "steeped beverage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400852", "lbl" : "miscellaneous food product (eurofir)", "type" : "CLASS", "meta" : { "definition" : { "val" : "EFG group 32, Eurocode-2 group 12." }, "comments" : [ "LanguaL curation note: Use for foods and ingredients that could not fit into any of the above classes." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0852" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400861", "lbl" : "prepared food product (eurofir)", "type" : "CLASS", "meta" : { "definition" : { "val" : "This subgroup includes multicomponent meals, sauces, retail salads, desserts, soups, snacks and other foods where similarity of the product type is more significant than the source of the principal ingredient(s)." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0861" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "soup, sauce or miscellaneous food product" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400865", "lbl" : "soup (eurofir)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid food made by simmering meat, poultry, seafood or vegetables, being clear or thickened to the consistency of a thin puree or having milk or cream added, and often containing pieces of solid food such as meat, shellfish, pasta or vegetables. Soup takes precedence over other food products. Examples are egg and lemon soup, oxtail soup, fish soup, rice soup, lentil soup, minestrone, cherry soup." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0865" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400874", "lbl" : "GS1 Global Product Classification (GPC)", "type" : "CLASS", "meta" : { "definition" : { "val" : "The Global System 1 (GS1) Global Product Classification (GPC) is a system that gives buyers and sellers a common language for grouping products in the same way, everywhere in the world.$br/$\nThe GS1 GPC classification in facet A is currently updated based on June 2017 release of GS1 GPC Standard for Food/Beverage/Tobacco, except for codes pertaining to tobacco. See the GS1 site for details [https://www.gs1.org/standards/gpc]." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0874" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://www.gs1.org/docs/gdsn/support/it/GDSN_Mandatory_Attributes_Simplified_TK.ppt" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://www.gs1.org/docs/gdsn/tiig/3_1/GDSN_Trade_Item_Implementation_Guide.pdf" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400960", "lbl" : "50220000 - cereal/grain/pulse products (gs1 gpc)", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0960" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03400969", "lbl" : "50221200 - processed cereal products (gs1 gpc)", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A0969" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03401061", "lbl" : "50190000 - prepared/preserved foods (gs1 gpc)", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A1061" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03401095", "lbl" : "50192900 - pasta/noodles (gs1 gpc)", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A1095" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03401270", "lbl" : "U.S. code of federal regulations, title 21 food product type", "type" : "CLASS", "meta" : { "definition" : { "val" : "Food and Drugs, title 21, Code of Federal Regulations. Original food classification in LanguaL." }, "comments" : [ "LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=A1270" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://www.ecfr.gov/cgi-bin/text-idx?SID=87f720ce0d0b6c4548f4bbfd1f8e4c3d&mc=true&tpl=/ecfrbrowse/Title21/21chapterI.tpl" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03411009", "lbl" : "polysaccharide-producing plant", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=B1009" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03411013", "lbl" : "plant used for producing extract or concentrate", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=B1013" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03411016", "lbl" : "starch-producing plant", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=B1016" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03411048", "lbl" : "carbohydrate-producing plant", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=B1048" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03412344", "lbl" : "devils tongue plant", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=B2344" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "amorphophallus konjac" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "amorphophallus rivieri" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "hydrosme rivieri" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "leopard palm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03412637", "lbl" : "konjac plant", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=B2637" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "amorphophallus rivieri var. konjac" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03420108", "lbl" : "sugar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A broad term that includes the nutritive sweeteners dextrose, fructose, galactose, lactose, maltose and sucrose, which are simple carbohydrates with molecules composed of one or two saccharide units. Note that on a product label or in a recipe, 'sugar' means *SUCROSE* and should be so indexed. Use the broad term *SUGAR* only if the specific sugar used is not known or not listed in the vocabulary." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=C0108" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03420152", "lbl" : "carbohydrate extract, concentrate, or isolate", "type" : "CLASS", "meta" : { "definition" : { "val" : "Extract, concentrate or isolate high in sugar, oligosaccharide or polysaccharide." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=C0152" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03420156", "lbl" : "brown sugar", "type" : "CLASS", "meta" : { "definition" : { "val" : "Soft sugar whose crystals are covered by a film of refined dark syrup that imparts color, flavor, and moisture." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=C0156" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03420228", "lbl" : "extract, concentrate or isolate of plant or animal", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical-chemical component separated from the food source or its parts by extraction, centrifugation, filtration, heat processing, expressing or a similar process. The separated component may be converted through further processing. If this is done, the final substance is indexed. A water-extracted component may remain in aqueous dispersion. The extract, concentrate or isolate is indexed in preference to the anatomic part from which it is derived. For example, peanut oil is indexed under *PEANUT* combined wih *FAT OR OIL* rather than with *SEED OR KERNEL*. On the other hand, fruit and vegetable juices can be indexed under *FRUIT JUICE OR NECTAR* or *VEGETABLE JUICE* (A. PRODUCT TYPE); therefore the anatomic part of the plant should be indexed." }, "comments" : [ "Damion Dooley's note: Items in this branch will be merged into foodon food product branch." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=C0228" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03420244", "lbl" : "mammalian milk whey", "type" : "CLASS", "meta" : { "definition" : { "val" : "The serum or watery part of milk that is separated from the thicker or more coagulable part or curd, espcially in the process of making cheese; it contains lactose, minerals and lactalbumin." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "whey" } ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=C0244" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03420307", "lbl" : "seed oil", "type" : "CLASS", "meta" : { "definition" : { "val" : "The oil produced by pressing or extracting lipids from plant seeds (e.g. grapeseed oil, rapeseed oil, linseed oil) /AM" }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=C0307" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03430109", "lbl" : "food (liquid, low viscosity)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A liquid that flows very easily at room temperature. Examples are: water, apple juice, sherry, acidophilus milk, whipping cream and some heavy liqueurs. The range of low viscosity liquid spans sucrose solutions between 0 and 45% solids (viscosity range from 1 to 10 centipoise). Prefer 'solid pieces' factor term to 'small particles' if both appear in the food." }, "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=E0109" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "liquid, thin" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03430130", "lbl" : "food (liquid)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A state of matter between a solid and a gas, in which a substance has the capacity to flow and conforms to the shape of the container. Liquids range from water to honey, corresponding to a range in viscosity (or apparent viscosity) from 1 to 500 centipoise (viscosity is a measure of a liquid's resistance to flow). Products that are pourable but have a higher viscosity are *SEMILIQUID*." }, "comments" : [ "SIREN DB annotation:\n* has quality 'liquid' (http://purl.obolibrary.org/obo/FOODON_03430130)\n " ], "xrefs" : [ { "val" : "SUBSET_SIREN:F5105" }, { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=E0130" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "val" : "fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03460156", "lbl" : "obsolete: molasses added", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/CHEBI_83163" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03460177", "lbl" : "plant seed or nut food product", "type" : "CLASS", "meta" : { "comments" : [ "LanguaL curation note: With the exception of peanut (see *PEANUT OR PEANUT BUTTER ADDED*), used when a nut or seed ingredient is the second ingredient in order of predominance." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=H0177" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This disjunction is provided for food indexers who used the LanguaL category per guidelines. Currently, by specifying the more specific nut or seed as ingredient instead, this category can be inferred." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "nut or seed added" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03460231", "lbl" : "chocolate or cocoa", "type" : "CLASS", "meta" : { "comments" : [ "LanguaL curation note: Used when chocolate or cocoa is added at any level or when chocolate is used as a coating." ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=H0231" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000122" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "chocolate or cocoa added" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/FOODON_03460263", "lbl" : "vegetable fat or oil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fat or oil derived from vegetable material" }, "comments" : [ "This is a convenience class inherited from LanguaL" ], "xrefs" : [ { "val" : "http://www.langual.org/langual_thesaurus.asp?termid=H0263" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000122" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Damion Dooley" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "vegetable fat or oil added" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://langual.org" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0003008", "lbl" : "system process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "organ system process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0006091", "lbl" : "generation of precursor metabolites and energy", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0006807", "lbl" : "nitrogen compound metabolic process", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0007588", "lbl" : "excretion", "type" : "CLASS", "meta" : { "definition" : { "val" : "The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds." } } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007610", "lbl" : "behavior", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0007631", "lbl" : "feeding behavior", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0008150", "lbl" : "biological_process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "biological process" }, { "pred" : "hasExactSynonym", "val" : "physiological process" }, { "pred" : "hasRelatedSynonym", "val" : "single organism process" }, { "pred" : "hasRelatedSynonym", "val" : "single-organism process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008152", "lbl" : "metabolic process", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0009058", "lbl" : "biosynthetic process", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0009060", "lbl" : "aerobic respiration", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0009061", "lbl" : "anaerobic respiration", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0009987", "lbl" : "cellular process", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0015947", "lbl" : "methane metabolic process", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0015948", "lbl" : "methanogenesis", "type" : "CLASS", "meta" : { "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0015975", "lbl" : "energy derivation by oxidation of reduced inorganic compounds", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0015979", "lbl" : "photosynthesis", "type" : "CLASS", "meta" : { "subsets" : [ "\"envoPolar\"" ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0015980", "lbl" : "energy derivation by oxidation of organic compounds", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0019329", "lbl" : "ammonia oxidation", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0019331", "lbl" : "anaerobic respiration, using ammonium as electron donor", "type" : "CLASS", "meta" : { "subsets" : [ 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force." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000051", "lbl" : "morphology", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000052", "lbl" : "shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "relational shape quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000057", "lbl" : "occurrence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "temporal" }, { "pred" : "hasExactSynonym", "val" : "incidence" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000058", "lbl" : "odor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000060", "lbl" : "spatial pattern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "distribution" }, { "pred" : "hasRelatedSynonym", "val" : "pattern" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000068", "lbl" : "qualitative", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000069", "lbl" : "deviation (from_normal)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000070", "lbl" : "amount", "type" : "CLASS", "meta" : { "definition" : { "val" : "The number of entities of this type that are part of the whole organism." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "presence or absence in organism" }, { "pred" : "hasExactSynonym", "val" : "quantitative" }, { "pred" : "hasRelatedSynonym", "val" : "count in organism" }, { "pred" : "hasRelatedSynonym", "val" : "number" }, { "pred" : "hasRelatedSynonym", "val" : "presence" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000080", "lbl" : "amplitude", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000085", "lbl" : "sensitivity toward", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sensitivity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000117", "lbl" : "size", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000122", "lbl" : "length", "type" : "CLASS", "meta" : { "definition" : { "val" : "A 1-D extent quality which is equal to the distance between two points." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000125", "lbl" : "mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000136", "lbl" : "closure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000140", "lbl" : "position", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "location" }, { "pred" : "hasExactSynonym", "val" : "placement" }, { "pred" : "hasExactSynonym", "val" : "relational spatial quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000141", "lbl" : "structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "conformation" }, { "pred" : "hasExactSynonym", "val" : "relational structural quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000146", "lbl" : "temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality of the thermal energy of a system." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000150", "lbl" : "texture", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000161", "lbl" : "rate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000165", "lbl" : "time", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality in which events occur in sequence." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000169", "lbl" : "viability", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000303", "lbl" : "increased speed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A speed which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high speed" }, { "pred" : "hasRelatedSynonym", "val" : "fast speed" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000304", "lbl" : "decreased speed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A speed which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "slow" }, { "pred" : "hasExactSynonym", "val" : "slow speed" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000308", "lbl" : "old", "type" : "CLASS", "meta" : { "definition" : { "val" : "An age which is relatively high." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000309", "lbl" : "young", "type" : "CLASS", "meta" : { "definition" : { "val" : "An age which is relatively low." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000318", "lbl" : "blue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000323", "lbl" : "white", "type" : "CLASS", "meta" : { "definition" : { "val" : "An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "whitish" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000330", "lbl" : "irregular spatial pattern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000337", "lbl" : "colorless", "type" : "CLASS", "meta" : { "definition" : { "val" : "A color quality inhering in a bearer by virtue of the bearer's lacking color." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "unpigmented" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000365", "lbl" : "down", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000366", "lbl" : "left", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000367", "lbl" : "right", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000370", "lbl" : "up", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000380", "lbl" : "increased frequency", "type" : "CLASS", "meta" : { "definition" : { "val" : "A frequency which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high frequency" }, { "pred" : "hasRelatedSynonym", "val" : "frequent" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000381", "lbl" : "decreased frequency", "type" : "CLASS", "meta" : { "definition" : { "val" : "A frequency which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low frequency" }, { "pred" : "hasRelatedSynonym", "val" : "infrequent" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000386", "lbl" : "hard", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hardness quality of being rigid and resistant to pressure." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "firm" }, { "pred" : "hasRelatedSynonym", "val" : "impenetrable" }, { "pred" : "hasRelatedSynonym", "val" : "tough" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000402", "lbl" : "branched", "type" : "CLASS", "meta" : { "definition" : { "val" : "A branchiness quality inhering in a bearer by virtue of the bearer's having branches." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ramified" }, { "pred" : "hasExactSynonym", "val" : "ramiform" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000404", "lbl" : "coiled", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "spiral" }, { "pred" : "hasRelatedSynonym", "val" : "helical" }, { "pred" : "hasRelatedSynonym", "val" : "helicoid" }, { "pred" : "hasRelatedSynonym", "val" : "helicoidal" }, { "pred" : "hasRelatedSynonym", "val" : "helix-shaped" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000405", "lbl" : "curled", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000406", "lbl" : "curved", "type" : "CLASS", "meta" : { "definition" : { "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "bowing" }, { "pred" : "hasRelatedSynonym", "val" : "curled" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000407", "lbl" : "flat", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "plate-like" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000411", "lbl" : "circular", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "round" }, { "pred" : "hasRelatedSynonym", "val" : "rounded" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000428", "lbl" : "sporadic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000438", "lbl" : "invariant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "uniform" }, { "pred" : "hasRelatedSynonym", "val" : "constant" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000440", "lbl" : "regular spatial pattern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000467", "lbl" : "present", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's existence." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "present in organism" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000573", "lbl" : "increased length", "type" : "CLASS", "meta" : { "definition" : { "val" : "A length quality which is relatively large." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "long" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000574", "lbl" : "decreased length", "type" : "CLASS", "meta" : { "definition" : { "val" : "A length quality which is relatively small." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "short" }, { "pred" : "hasRelatedSynonym", "val" : "shortened" }, { "pred" : "hasRelatedSynonym", "val" : "stubby" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000586", "lbl" : "increased size", "type" : "CLASS", "meta" : { "definition" : { "val" : "A size quality which is relatively high." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "big" }, { "pred" : "hasRelatedSynonym", "val" : "enlarged" }, { "pred" : "hasRelatedSynonym", "val" : "expanded" }, { "pred" : "hasRelatedSynonym", "val" : "great" }, { "pred" : "hasRelatedSynonym", "val" : "large" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000587", "lbl" : "decreased size", "type" : "CLASS", "meta" : { "definition" : { "val" : "A size quality which is relatively low." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "hypoplasia" }, { "pred" : "hasNarrowSynonym", "val" : "underdeveloped" }, { "pred" : "hasRelatedSynonym", "val" : "reduced" }, { "pred" : "hasRelatedSynonym", "val" : "small" }, { "pred" : "hasRelatedSynonym", "val" : "tiny" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000591", "lbl" : "increased thickness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thickness which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high thickness" }, { "pred" : "hasExactSynonym", "val" : "stout" }, { "pred" : "hasExactSynonym", "val" : "thickened" }, { "pred" : "hasRelatedSynonym", "val" : "thick" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000592", "lbl" : "decreased thickness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thickness which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low thickness" }, { "pred" : "hasRelatedSynonym", "val" : "slender" }, { "pred" : "hasRelatedSynonym", "val" : "thin" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000595", "lbl" : "increased volume", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volume which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high volume" }, { "pred" : "hasRelatedSynonym", "val" : "large volume" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000596", "lbl" : "decreased volume", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volume which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low volume" }, { "pred" : "hasRelatedSynonym", "val" : "small volume" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000599", "lbl" : "decreased width", "type" : "CLASS", "meta" : { "definition" : { "val" : "A width which is relatively small." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "narrow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000600", "lbl" : "increased width", "type" : "CLASS", "meta" : { "definition" : { "val" : "A width which is relatively large." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "broad" }, { "pred" : "hasRelatedSynonym", "val" : "wide" }, { "pred" : "hasRelatedSynonym", "val" : "wide/broad" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000608", "lbl" : "closed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "blocked" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000609", "lbl" : "closure incomplete", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000610", "lbl" : "open", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000618", "lbl" : "bilateral", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000619", "lbl" : "crowded", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000622", "lbl" : "erect", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "upright" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000629", "lbl" : "misrouted", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000631", "lbl" : "prostrate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000634", "lbl" : "unilateral", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000642", "lbl" : "fused with", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fused" }, { "pred" : "hasExactSynonym", "val" : "fused to" }, { "pred" : "hasRelatedSynonym", "val" : "coalesced" }, { "pred" : "hasRelatedSynonym", "val" : "joined with" }, { "pred" : "hasRelatedSynonym", "val" : "merged with" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000689", "lbl" : "continuous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "uninterrupted" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000690", "lbl" : "discontinuous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "interrupted" }, { "pred" : "hasRelatedSynonym", "val" : "intermittent" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000701", "lbl" : "smooth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000911", "lbl" : "decreased rate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rate which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "slow rate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000912", "lbl" : "increased rate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rate which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fast rate" }, { "pred" : "hasExactSynonym", "val" : "high rate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000915", "lbl" : "thickness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000918", "lbl" : "volume", "type" : "CLASS", "meta" : { "definition" : { "val" : "A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000921", "lbl" : "width", "type" : "CLASS", "meta" : { "definition" : { "val" : "A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "breadth" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000946", "lbl" : "oblong", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000947", "lbl" : "elliptic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ellipse-shaped" }, { "pred" : "hasExactSynonym", "val" : "ellipsoid" }, { "pred" : "hasExactSynonym", "val" : "elliptical" }, { "pred" : "hasRelatedSynonym", "val" : "oval" }, { "pred" : "hasRelatedSynonym", "val" : "ovoid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000952", "lbl" : "brown", "type" : "CLASS", "meta" : { "definition" : { "val" : "A color consisting of dark orange, red, of very low intensity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000957", "lbl" : "opacity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An optical quality which obtains by virtue of the ability of the bearer to absorb visible light." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000963", "lbl" : "opaque", "type" : "CLASS", "meta" : { "definition" : { "val" : "A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "non-transparent" }, { "pred" : "hasRelatedSynonym", "val" : "clouding" }, { "pred" : "hasRelatedSynonym", "val" : "cloudy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000964", "lbl" : "transparent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A optical quality inhering in a bearer by virtue of the bearer's lacking opacity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "clear" }, { "pred" : "hasExactSynonym", "val" : "hyaline" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000967", "lbl" : "undulate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "undulated" }, { "pred" : "hasExactSynonym", "val" : "undulating" }, { "pred" : "hasExactSynonym", "val" : "waved" }, { "pred" : "hasExactSynonym", "val" : "wavy" }, { "pred" : "hasRelatedSynonym", "val" : "rippled" }, { "pred" : "hasRelatedSynonym", "val" : "sinuate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000970", "lbl" : "permeability", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000973", "lbl" : "porosity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structure quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000982", "lbl" : "permeable", "type" : "CLASS", "meta" : { "definition" : { "val" : "A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "porous" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000983", "lbl" : "impermeable", "type" : "CLASS", "meta" : { "definition" : { "val" : "A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000984", "lbl" : "porous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000985", "lbl" : "non-porous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000992", "lbl" : "viscosity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality of a fluid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000998", "lbl" : "viscous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001018", "lbl" : "physical quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "relational physical quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001019", "lbl" : "mass density", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "density" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001023", "lbl" : "momentum", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's velocity multiplied by its mass." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001025", "lbl" : "pressure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001028", "lbl" : "acceleration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001029", "lbl" : "efficiency", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001030", "lbl" : "flux", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality that exists by virtue of the rate of flow of the bearer across a given surface." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001031", "lbl" : "elasticity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001154", "lbl" : "elongated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001159", "lbl" : "concentrated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001161", "lbl" : "diluted", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration which relatively low." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001162", "lbl" : "increased concentration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration which is higher relative to the normal or average." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high concentration" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001163", "lbl" : "decreased concentration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration which is lower relative to the normal or average." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low concentration" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001164", "lbl" : "dense", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001171", "lbl" : "elastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001172", "lbl" : "inelastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001191", "lbl" : "medial to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001193", "lbl" : "lateral to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lateral" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001195", "lbl" : "proximal to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001199", "lbl" : "linear", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001201", "lbl" : "Y-shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001208", "lbl" : "odorless", "type" : "CLASS", "meta" : { "definition" : { "val" : "An odor quality inhering in a bearer by virtue of the bearer's lacking odour." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001227", "lbl" : "variant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "variable" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001230", "lbl" : "strength", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's power or force." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001234", "lbl" : "distal to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "distal" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001236", "lbl" : "process quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality which inheres in an process." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "quality of a process" }, { "pred" : "hasExactSynonym", "val" : "quality of occurrent" }, { "pred" : "hasExactSynonym", "val" : "quality of process" }, { "pred" : "hasExactSynonym", "val" : "relational quality of occurrent" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001241", "lbl" : "physical object quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality which inheres in a continuant." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "monadic quality of a continuant" }, { "pred" : "hasExactSynonym", "val" : "multiply inhering quality of a physical entity" }, { "pred" : "hasExactSynonym", "val" : "quality of a continuant" }, { "pred" : "hasExactSynonym", "val" : "quality of a single physical entity" }, { "pred" : "hasExactSynonym", "val" : "quality of an object" }, { "pred" : "hasExactSynonym", "val" : "quality of continuant" }, { "pred" : "hasNarrowSynonym", "val" : "monadic quality of an object" }, { "pred" : "hasNarrowSynonym", "val" : "monadic quality of continuant" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001291", "lbl" : "electromagnetic (EM) radiation quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001292", "lbl" : "full-spectrum EM radiation quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "An EM radiation quality that is independent of the EM wavelength range." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001294", "lbl" : "radiation reflective quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001295", "lbl" : "albedo", "type" : "CLASS", "meta" : { "definition" : { "val" : "A reflective quality restricted to a particular wavelength." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001296", "lbl" : "luminous flux", "type" : "CLASS", "meta" : { "definition" : { "val" : "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001300", "lbl" : "optical quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001303", "lbl" : "variability", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "variability of a physical quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001305", "lbl" : "increased temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high temperature" }, { "pred" : "hasExactSynonym", "val" : "hot" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001306", "lbl" : "decreased temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cold" }, { "pred" : "hasExactSynonym", "val" : "low temperature" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001309", "lbl" : "duration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "period" }, { "pred" : "hasRelatedSynonym", "val" : "time" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001323", "lbl" : "area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001332", "lbl" : "amorphous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001351", "lbl" : "area density", "type" : "CLASS", "meta" : { "definition" : { "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001353", "lbl" : "volumetric density", "type" : "CLASS", "meta" : { "definition" : { "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001354", "lbl" : "translucent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001360", "lbl" : "filamentous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001367", "lbl" : "lobate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001410", "lbl" : "striated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001411", "lbl" : "structured", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001412", "lbl" : "unstructured", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001413", "lbl" : "angular velocity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001420", "lbl" : "buoyancy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001422", "lbl" : "dead", "type" : "CLASS", "meta" : { "definition" : { "val" : "A viability quality inhering in a bearer by virtue of the cessation of the bearer's life." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001428", "lbl" : "medium acidity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001429", "lbl" : "acidic", "type" : "CLASS", "meta" : { "definition" : { "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001430", "lbl" : "alkaline", "type" : "CLASS", "meta" : { "definition" : { "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001432", "lbl" : "decayed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001435", "lbl" : "attachment quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001442", "lbl" : "wholeness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001444", "lbl" : "broken", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's components no longer being in a single contiguous unit." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fragmented" }, { "pred" : "hasNarrowSynonym", "val" : "fractured" }, { "pred" : "hasRelatedSynonym", "val" : "cracked" }, { "pred" : "hasRelatedSynonym", "val" : "hemorrhaged" }, { "pred" : "hasRelatedSynonym", "val" : "split" }, { "pred" : "hasRelatedSynonym", "val" : "torn" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001447", "lbl" : "calcified", "type" : "CLASS", "meta" : { "definition" : { "val" : "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "calcareous" }, { "pred" : "hasNarrowSynonym", "val" : "calcification" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001453", "lbl" : "detached from", "type" : "CLASS", "meta" : { "definition" : { "val" : "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "detached" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001454", "lbl" : "sensitivity to oxygen", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001455", "lbl" : "aerobic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001456", "lbl" : "anaerobic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's independence on oxygen." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001472", "lbl" : "decreased depth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depth which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low depth" }, { "pred" : "hasExactSynonym", "val" : "shallow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001475", "lbl" : "increased position", "type" : "CLASS", "meta" : { "definition" : { "val" : "A position which is relatively high." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "high position" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001476", "lbl" : "decreased position", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional which is relatively low." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "low position" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001481", "lbl" : "sloped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001485", "lbl" : "condensed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "compact" }, { "pred" : "hasExactSynonym", "val" : "compressed" }, { "pred" : "hasExactSynonym", "val" : "squashed" }, { "pred" : "hasRelatedSynonym", "val" : "dense" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001499", "lbl" : "spherical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "globular" }, { "pred" : "hasRelatedSynonym", "val" : "rotund" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001509", "lbl" : "functionality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s)." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001510", "lbl" : "functional", "type" : "CLASS", "meta" : { "definition" : { "val" : "A functionality quality held by the bearer when the latter is able to perform a regular function(s)." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001522", "lbl" : "sound speed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001536", "lbl" : "solubility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001543", "lbl" : "flexibility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001544", "lbl" : "flexible", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bendy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001545", "lbl" : "inflexible", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "stiff" }, { "pred" : "hasRelatedSynonym", "val" : "stiffness" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001546", "lbl" : "quality of a solid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "solidity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001547", "lbl" : "quality of a gas", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gaseous" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001548", "lbl" : "quality of a liquid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "liquidity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001559", "lbl" : "having extra function", "type" : "CLASS", "meta" : { "definition" : { "val" : "A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "having supernumerary functions" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001562", "lbl" : "decreased mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass which is lower than normal or average." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low mass" }, { "pred" : "hasExactSynonym", "val" : "small mass" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001563", "lbl" : "increased mass", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mass which is higher than normal or average." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high mass" }, { "pred" : "hasExactSynonym", "val" : "large mass" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001566", "lbl" : "distributed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "diffuse" }, { "pred" : "hasExactSynonym", "val" : "scattered" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001574", "lbl" : "flow rate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's motion characteristic." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001575", "lbl" : "decreased pressure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pressure which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low pressure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001576", "lbl" : "increased pressure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pressure which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high pressure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001583", "lbl" : "decreased variability", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low variability" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001584", "lbl" : "increased variability", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high variability" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001585", "lbl" : "conductivity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001591", "lbl" : "curvature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001594", "lbl" : "arched", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001595", "lbl" : "depth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimension." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001596", "lbl" : "increased depth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depth quality which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "deep" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001598", "lbl" : "protruding", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "protruding" }, { "pred" : "hasExactSynonym", "val" : "relational protruding quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001608", "lbl" : "patchy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001617", "lbl" : "deformed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "disfigured" }, { "pred" : "hasRelatedSynonym", "val" : "distorted" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001624", "lbl" : "decreased functionality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s)." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "dysfunction" }, { "pred" : "hasBroadSynonym", "val" : "dysfunctional" }, { "pred" : "hasExactSynonym", "val" : "having decreased function" }, { "pred" : "hasExactSynonym", "val" : "lacks function of type" }, { "pred" : "hasExactSynonym", "val" : "low functionality" }, { "pred" : "hasExactSynonym", "val" : "partial functionality" }, { "pred" : "hasRelatedSynonym", "val" : "impaired" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001625", "lbl" : "increased functionality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high functionality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001629", "lbl" : "aggregated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "clumped" }, { "pred" : "hasExactSynonym", "val" : "clustered" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001630", "lbl" : "dispersed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001632", "lbl" : "anterior to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "preceding" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001645", "lbl" : "protruding into", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001646", "lbl" : "protruding out of", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "extruding from" }, { "pred" : "hasRelatedSynonym", "val" : "exits through" }, { "pred" : "hasRelatedSynonym", "val" : "exposed" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001648", "lbl" : "circumference", "type" : "CLASS", "meta" : { "definition" : { "val" : "An 1-D extent quality which is equal to the length of the closed curve of a circle." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001652", "lbl" : "alignment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001653", "lbl" : "aligned with", "type" : "CLASS", "meta" : { "definition" : { "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "aligned" }, { "pred" : "hasRelatedSynonym", "val" : "aligned to" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001654", "lbl" : "misaligned with", "type" : "CLASS", "meta" : { "definition" : { "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "misaligned" }, { "pred" : "hasExactSynonym", "val" : "unaligned with" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001655", "lbl" : "osmolarity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001657", "lbl" : "increased osmolarity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A osmolarity which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high osmolarity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001671", "lbl" : "increased distribution", "type" : "CLASS", "meta" : { "definition" : { "val" : "A distribution which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high distribution" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001672", "lbl" : "decreased distribution", "type" : "CLASS", "meta" : { "definition" : { "val" : "A distribution which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low distribution" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001675", "lbl" : "decreased efficiency", "type" : "CLASS", "meta" : { "definition" : { "val" : "An efficiency which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low efficiency" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001676", "lbl" : "increased efficiency", "type" : "CLASS", "meta" : { "definition" : { "val" : "An efficiency which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high efficiency" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001678", "lbl" : "efficient", "type" : "CLASS", "meta" : { "definition" : { "val" : "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001682", "lbl" : "magnetism", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001685", "lbl" : "magnetic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001687", "lbl" : "elevation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001688", "lbl" : "increased elevation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An elevation which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high elevation" }, { "pred" : "hasRelatedSynonym", "val" : "elevated" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001689", "lbl" : "decreased elevation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An elevation which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low elevation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001693", "lbl" : "increased viscosity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A viscosity which relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high viscosity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001708", "lbl" : "1-D extent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in one dimension." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "1-D size" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001709", "lbl" : "2-D extent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "2-D size" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001710", "lbl" : "3-D extent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "3D size" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001711", "lbl" : "perimeter", "type" : "CLASS", "meta" : { "definition" : { "val" : "An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001712", "lbl" : "increased perimeter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A perimeter which is relatively high." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001713", "lbl" : "decreased perimeter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A perimeter which is relatively low." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001729", "lbl" : "shedability", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entity by natural process." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001730", "lbl" : "deciduous (generic)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001731", "lbl" : "deciduous (plant)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a plant by virtue of the bearer's disposition to shed foliage." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001732", "lbl" : "non-deciduous (any body part)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001733", "lbl" : "evergreen (plant)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a plant by virtue of the bearer's disposition to retain foliage." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001734", "lbl" : "semi-deciduous(plant)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001739", "lbl" : "radiation quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001740", "lbl" : "activity (of a radionuclide)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "radioactivity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001741", "lbl" : "radioactive", "type" : "CLASS", "meta" : { "definition" : { "val" : "A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001756", "lbl" : "heat conductivity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "thermal conduction" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001757", "lbl" : "electrical conductivity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001759", "lbl" : "granular", "type" : "CLASS", "meta" : { "definition" : { "val" : "A composition quality inhering in a bearer by virtue of the bearer's containing granules." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001779", "lbl" : "decreased strength", "type" : "CLASS", "meta" : { "definition" : { "val" : "A strength which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "weak" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001781", "lbl" : "irregular thickness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thickness quality which lacks pattern." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001788", "lbl" : "increased mass density", "type" : "CLASS", "meta" : { "definition" : { "val" : "A density which is higher relative to the normal or average." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high density" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001789", "lbl" : "domed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001790", "lbl" : "decreased mass density", "type" : "CLASS", "meta" : { "definition" : { "val" : "A density which is lower relative to the normal or average." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low density" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001792", "lbl" : "left side of", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001793", "lbl" : "right side of", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001794", "lbl" : "coiling", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001799", "lbl" : "ruffled", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001822", "lbl" : "wetness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001823", "lbl" : "wet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001824", "lbl" : "dry", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001825", "lbl" : "increased wetness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wetness quality that is relatively high." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001826", "lbl" : "decreased wetness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wetness quality that is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low wetness" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001838", "lbl" : "decreased fluid flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flow that is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low flow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001839", "lbl" : "increased fluid flow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluid flow that is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high flow" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001842", "lbl" : "acidity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pH" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001844", "lbl" : "increased acidity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An acidity which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high acidity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001846", "lbl" : "tangled", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001854", "lbl" : "vertical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001855", "lbl" : "horizontal", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001857", "lbl" : "concave", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality in a bearer by virtue of the bearer's curving inward." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001865", "lbl" : "spheroid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "sphericality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001873", "lbl" : "cylindrical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "rod-like" }, { "pred" : "hasExactSynonym", "val" : "rod-shaped" }, { "pred" : "hasNarrowSynonym", "val" : "tubulate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001879", "lbl" : "U-shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "horseshoe shaped" }, { "pred" : "hasNarrowSynonym", "val" : "horseshoe" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001884", "lbl" : "hydrophobicity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001885", "lbl" : "hydrophobic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001886", "lbl" : "hydrophilicity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001887", "lbl" : "hydrophilic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001890", "lbl" : "tripartite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "trifurcate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001899", "lbl" : "decreased circumference", "type" : "CLASS", "meta" : { "definition" : { "val" : "A circumference which is relatively low." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001900", "lbl" : "front", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001901", "lbl" : "back", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "lbl" : "unidirectional", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's having one direction only." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001903", "lbl" : "bi-directional", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's having two directions." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001904", "lbl" : "circling direction", "type" : "CLASS", "meta" : { "definition" : { "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001906", "lbl" : "movement quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's participation in movement." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001925", "lbl" : "surface feature shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001933", "lbl" : "opposite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001935", "lbl" : "obtuse", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "roundish" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001956", "lbl" : "variability of size", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001957", "lbl" : "decreased variability of size", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability of size which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low variability of size" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001958", "lbl" : "increased variability of size", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability of size which is relatively high." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high variability of size" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001960", "lbl" : "interdigitated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001977", "lbl" : "angular", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "angulate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001985", "lbl" : "frozen", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001986", "lbl" : "dissolved", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's passing into solution." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001995", "lbl" : "organismal quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality that inheres in an entire organism or part of an organism." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001997", "lbl" : "decreased amount", "type" : "CLASS", "meta" : { "definition" : { "val" : "An amount which is relatively low." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "decreased number" }, { "pred" : "hasExactSynonym", "val" : "present in fewer numbers in organism" }, { "pred" : "hasRelatedSynonym", "val" : "decreased" }, { "pred" : "hasRelatedSynonym", "val" : "reduced" }, { "pred" : "hasRelatedSynonym", "val" : "subnumerary" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002005", "lbl" : "concavity", "type" : "CLASS", "meta" : { "definition" : { "val" : "Surface shape that refers to the inward or outward curvature of the surface." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002006", "lbl" : "2-D shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "2-D projection" }, { "pred" : "hasRelatedSynonym", "val" : "cross-sectional" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002007", "lbl" : "convex 3-D shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002008", "lbl" : "concave 3-D shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002009", "lbl" : "branchiness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002014", "lbl" : "structure, cavities", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002021", "lbl" : "conical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cone-shaped" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002057", "lbl" : "increased area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area which is relatively high." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002058", "lbl" : "decreased area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area which is relatively low." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002062", "lbl" : "physical quality of a process", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002063", "lbl" : "columnar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002064", "lbl" : "fenestrated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002067", "lbl" : "stratification", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002068", "lbl" : "stratified", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002078", "lbl" : "hollow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002080", "lbl" : "broken into two pieces", "type" : "CLASS", "meta" : { "definition" : { "val" : "A broken quality inhering in a bearer by virtue of the bearer's being separated into two contiguous wholes." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002103", "lbl" : "infiltrative", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "infiltrating" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002107", "lbl" : "peripheral", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002121", "lbl" : "trabecular", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's structure resembling an irregular meshwork with cross-linking struts." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002124", "lbl" : "laminar", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002138", "lbl" : "edibility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "edibleness" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002139", "lbl" : "edible", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002140", "lbl" : "inedible", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002141", "lbl" : "irregular density", "type" : "CLASS", "meta" : { "definition" : { "val" : "A density quality which lacks pattern." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002143", "lbl" : "sloped downward", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002165", "lbl" : "drooping", "type" : "CLASS", "meta" : { "definition" : { "val" : "To bent or hang downwards." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sagging" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002173", "lbl" : "misaligned towards", "type" : "CLASS", "meta" : { "definition" : { "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002174", "lbl" : "misaligned away from", "type" : "CLASS", "meta" : { "definition" : { "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002180", "lbl" : "straight", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002181", "lbl" : "displaced", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue the bearer's being changed in position." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002182", "lbl" : "molecular quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "relational molecular quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002198", "lbl" : "quality of a substance", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of its constitution." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002212", "lbl" : "slender", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "gracile" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002215", "lbl" : "falciform", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "falcate" }, { "pred" : "hasExactSynonym", "val" : "hooked" }, { "pred" : "hasExactSynonym", "val" : "scythe-shaped" }, { "pred" : "hasExactSynonym", "val" : "sickle-shaped" }, { "pred" : "hasExactSynonym", "val" : "unciform" }, { "pred" : "hasExactSynonym", "val" : "uncinate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002219", "lbl" : "fan-shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer that is shaped in the form of a fan." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fan-like" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002224", "lbl" : "V-shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002233", "lbl" : "far from", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "distant from" }, { "pred" : "hasExactSynonym", "val" : "remote from" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002242", "lbl" : "velocity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002243", "lbl" : "fluid flow rate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "volume flow rate" }, { "pred" : "hasExactSynonym", "val" : "volumetric flow rate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002253", "lbl" : "platelike", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "plate-like" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002254", "lbl" : "flattened", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "compressed" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002255", "lbl" : "grooved", "type" : "CLASS", "meta" : { "definition" : { "val" : "Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "channeled" }, { "pred" : "hasRelatedSynonym", "val" : "creased" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002260", "lbl" : "semi erect", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "semi upright" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002266", "lbl" : "3-D shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape that inheres in a 3 dimensional entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002267", "lbl" : "edge shape", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002268", "lbl" : "centered", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002269", "lbl" : "accumulation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality of the collection or massing of one physical object within another physical object." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "pooled" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002270", "lbl" : "increased accumulation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "accumulated" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002271", "lbl" : "decreased accumulation", "type" : "CLASS", "meta" : { "definition" : { "val" : "An accumulation which is relative low." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002272", "lbl" : "parallel to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002292", "lbl" : "transient", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "transient structure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002299", "lbl" : "tubular", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cylindrical shape that is hollow." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tube like" }, { "pred" : "hasExactSynonym", "val" : "tube-shaped" }, { "pred" : "hasExactSynonym", "val" : "tubulate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002300", "lbl" : "increased quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality that has a value that is increased compared to normal or average." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002301", "lbl" : "decreased quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality that has a value that is decreased compared to normal or average." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002302", "lbl" : "decreased process quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a process that has a value that is decreased compared to normal or average." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002303", "lbl" : "decreased object quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of an object that has a value that is decreased compared to normal or average." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002304", "lbl" : "increased process quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a process that has a value that is increased compared to normal or average." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002305", "lbl" : "increased object quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of an object that has a value that is increased compared to normal or average." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002311", "lbl" : "fimbriated", "type" : "CLASS", "meta" : { "definition" : { "val" : "Having a fringe or border of hairlike or fingerlike projections." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002318", "lbl" : "superelliptic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt" }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Lamé curve" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002323", "lbl" : "temporal distribution quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temporal distribution pattern of process occurrences within a regulation/reference process." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002335", "lbl" : "tholiform", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002349", "lbl" : "basal to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002350", "lbl" : "cauline to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002352", "lbl" : "herbaceous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002359", "lbl" : "broad", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002374", "lbl" : "fluctuating", "type" : "CLASS", "meta" : { "definition" : { "val" : "Recurrent and often more or less cyclic alteration." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002386", "lbl" : "anvil", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anvil shaped" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002416", "lbl" : "sunken", "type" : "CLASS", "meta" : { "definition" : { "val" : "Flattened from above downward; below the normal level or the level of the surrounding parts." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002425", "lbl" : "exposed", "type" : "CLASS", "meta" : { "definition" : { "val" : "Open to view or not covered by another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002433", "lbl" : "sculpted surface", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002435", "lbl" : "abutting", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "abut" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002436", "lbl" : "offset", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002440", "lbl" : "ornamentation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002441", "lbl" : "ornamented", "type" : "CLASS", "meta" : { "definition" : { "val" : "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002443", "lbl" : "level with", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002453", "lbl" : "eroding", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002463", "lbl" : "extends to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002471", "lbl" : "increased velocity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002472", "lbl" : "decreased velocity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002483", "lbl" : "external to", "type" : "CLASS", "meta" : { "definition" : { "val" : "Positional quality in which an entity is located outside of another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002513", "lbl" : "oblique to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002518", "lbl" : "flush", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002521", "lbl" : "funnel-shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0005001", "lbl" : "variability of count", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "variable number" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0005005", "lbl" : "radiating", "type" : "CLASS", "meta" : { "definition" : { "val" : "Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0005011", "lbl" : "continuous with", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0010001", "lbl" : "disconnected", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015009", "lbl" : "humidity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015010", "lbl" : "increased humidity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An increase in humidity." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "humid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015011", "lbl" : "decreased humidity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An decrease in humidity." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015021", "lbl" : "combustibility", "type" : "CLASS", "meta" : { "definition" : { "val" : "The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015022", "lbl" : "increased combustibility", "type" : "CLASS", "meta" : { "definition" : { "val" : "An increase in combustibility." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "combustible" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015030", "lbl" : "plume-shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "feather-shaped" }, { "pred" : "hasExactSynonym", "val" : "plumed" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0040008", "lbl" : "fringed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0040009", "lbl" : "bowl shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045001", "lbl" : "normal object quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of an object that has a value that is normal or average." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045040", "lbl" : "normal position", "type" : "CLASS", "meta" : { "definition" : { "val" : "A position which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045044", "lbl" : "normal pressure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pressure which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045050", "lbl" : "normal size", "type" : "CLASS", "meta" : { "definition" : { "val" : "A size quality which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045051", "lbl" : "normal area", "type" : "CLASS", "meta" : { "definition" : { "val" : "An area which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045052", "lbl" : "normal depth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depth quality which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045060", "lbl" : "normal volume", "type" : "CLASS", "meta" : { "definition" : { "val" : "A volume which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045061", "lbl" : "normal width", "type" : "CLASS", "meta" : { "definition" : { "val" : "A width which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045063", "lbl" : "normal speed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A speed which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045079", "lbl" : "normal velocity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A velocity which is relatively normal or average" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045090", "lbl" : "cardinal direction", "type" : "CLASS", "meta" : { "definition" : { "val" : "The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045091", "lbl" : "north", "type" : "CLASS", "meta" : { "definition" : { "val" : "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045092", "lbl" : "east", "type" : "CLASS", "meta" : { "definition" : { "val" : "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045093", "lbl" : "south", "type" : "CLASS", "meta" : { "definition" : { "val" : "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045094", "lbl" : "west", "type" : "CLASS", "meta" : { "definition" : { "val" : "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0050000", "lbl" : "rate of occurence", "type" : "CLASS", "meta" : { "definition" : { "val" : "The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)" } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0055003", "lbl" : "increased rate of occurrence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rate of occurrence that is relatively high." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0055004", "lbl" : "decreased rate of occurrence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rate of occurrence that is relatively low." } } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0070060", "lbl" : "quality of interaction of a substance with electromagnetic radiation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a substance on which or through which electromagnetic radiation impinges or traverses with respect to radiation. This substance quality changes the quality of the incident radiation with respect to any of: intensity, direction, scatter and wavelength." } } }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000000", "lbl" : "collection of organisms", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity that consists of two or more organisms, viruses, or viroids." }, "comments" : [ "May be of the same or different species." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "group of organism" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "organism collection" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000001", "lbl" : "population of organisms", "type" : "CLASS", "meta" : { "definition" : { "val" : "A collection of organisms, all of the same species, that live in the same place." }, "comments" : [ "It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population of organisms. \n\nClasses for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "ISBN:0878932739" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000002", "lbl" : "ecological community", "type" : "CLASS", "meta" : { "definition" : { "val" : "A multi-species collection of organisms of at least two different species, living in a particular area. Must have at least two populations of different species as members." }, "comments" : [ "Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community." ], "subsets" : [ "\"envoPolar\"" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "multispecies community" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "ISBN:0865423504" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000018", "lbl" : "single-species collection of organisms", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000120" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "collection of organisms of the same species" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000029", "lbl" : "multi-species collection of organisms", "type" : "CLASS", "meta" : { "definition" : { "val" : "A collection of organisms that consists of two or more organisms from at least two species." }, "comments" : [ "" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000123" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say \"('has member' only ('member of' min 2 'species as a collection of organisms'))\"." } ] } }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000031", "lbl" : "organismal entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity that is one or more organisms, viruses or viroids." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000120" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000051", "lbl" : "multi-species collection of microbes", "type" : "CLASS", "meta" : { "definition" : { "val" : "A multi-species collection of organisms that consists of two or more microbes from at least two species." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "https://orcid.org/0000-0001-8815-0078" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PCO_1000004", "lbl" : "microbial community", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ecological community which is composed of co-existing populations of microbial organisms that interact, directly or indirectly, such that they impact one another's ecological fitness." }, "comments" : [ "The definition of a microbial species is deeply debated, however, units of phylogenetic and functional diversity are recognised with respect to their varying roles in an ecosystem. In turn, there exist multiple operational definitions of microbial community, such as local, phenomenological, and indexical communities. This class seeks to capture microbial communities in a very broad sense, as collections of phylogenetically and functionally divergent microbial organisms co-existing, potentially interacting, and competing for niche space in the same ecosystem over a period of time in which their causal footprints overlap one another." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "microbiota" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A class for a collection of organisms considered \"microbial\" and an accompanying quality in PATO (e.g. \"microscopic\") would be useful to better axiomatise this class. See https://github.com/PopulationAndCommunityOntology/pco/issues/22" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "http://orcid.org/0000-0002-4366-3088" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://dx.doi.org/10.1038/ismej.2009.88" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0000003", "lbl" : "whole plant", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant structure (PO:0005679) which is a whole organism.", "xrefs" : [ "POC:curators" ] }, "comments" : [ "Examples include plant embryo (PO:0009009), megagametophyte (PO:0025279) and microgametophyte (PO:0025280)." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet", "http://purl.obolibrary.org/obo/po#reference" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "genet (broad)" }, { "pred" : "hasBroadSynonym", "val" : "ramet (broad)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "planta entera (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物体全体 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasNarrowSynonym", "val" : "bush (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "frutex (narrow)", "xrefs" : [ "FNA:e4dde193-57f7-4ab9-9d25-96b4ca0088ba" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Plural", "pred" : "hasNarrowSynonym", "val" : "frutices (narrow)", "xrefs" : [ "FNA:ec8c2064-2a67-43d7-8e14-aecfef5cf33b" ] }, { "pred" : "hasNarrowSynonym", "val" : "gametophyte (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "herb (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "liana (narrow)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Plural", "pred" : "hasNarrowSynonym", "val" : "prothalli (narrow)", "xrefs" : [ "FNA:4b610104-1bb0-4c6b-9bb9-e3cc61d11ac0" ] }, { "pred" : "hasNarrowSynonym", "val" : "prothallium (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "prothallus (narrow)", "xrefs" : [ "FNA:f8f31520-e4bc-4430-9274-8dd3cee7ffd8" ] }, { "pred" : "hasNarrowSynonym", "val" : "seedling (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "shrub (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "sporophyte (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "suffrutex (narrow)", "xrefs" : [ "FNA:99508f62-7116-4e2b-90c0-19ff55ebd967" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Plural", "pred" : "hasNarrowSynonym", "val" : "suffrutices (narrow)", "xrefs" : [ "FNA:ba1b1bd5-75bd-4195-b11c-3aba08da08c2" ] }, { "pred" : "hasNarrowSynonym", "val" : "tree (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "vine (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "woody clump (narrow)", "xrefs" : [ "FNA:c1ccca7d-2a98-4a9d-8603-c34b551935e0" ] }, { "pred" : "hasRelatedSynonym", "val" : "clonal colony (related)" }, { "pred" : "hasRelatedSynonym", "val" : "colony (related)" } ], "xrefs" : [ { "val" : "PO_GIT:538" }, { "val" : "PO_GIT:69" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0000022", "lbl" : "plant cuticle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of plant substance (PO:0025161) composed of cutin (PO:0025385), a polyester matrix of hydroxy- and hydroxy epoxy fatty acids C16 and C18 chains, embedded and overlayed with cuticular wax (PO:0025386) and forming a layer on the surface of a plant epidermis (PO:0005679).", "xrefs" : [ "ISBN:0471245208", "POC:Laurel_Cooper" ] }, "comments" : [ "The plant cuticle is produced in and secreted by epidermal cells (PO:0004013) of leaves (PO:0025034), stems (PO:0009047), fruits (PO:0009001), and other aerial plant structures. It has as parts an inner cuticle proper (PO:0025387) and an outer layer of epicuticular wax (PO:0025388)." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cuticle (broad)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "cutícula (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物クチクラ (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:416" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0000037", "lbl" : "shoot axis apex", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shoot axis (PO:0025029) that is the most distal part of a shoot system (PO:0009006) and has as parts a shoot apical meristem (PO:0020148) and the youngest primordia (PO:0025127).", "xrefs" : [ "POC:curators" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#reference" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "ápice del epiblasto (epiblastema) (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "シュート頂、茎頂 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:234" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0000112", "lbl" : "shoot axis epidermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of shoot system epidermis (PO:0006035) that is part of a shoot axis (PO:0025029).", "xrefs" : [ "POC:Laurel_Cooper", "POC:curators" ] }, "comments" : [ "Can occur on a stem or branch." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "epidermis del eje del tallo (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "シュート軸表皮 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasNarrowSynonym", "val" : "branch epidermis (narrow)" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0000225", "lbl" : "peripheral zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of meristem tissue (PO:0009013) which is the organogenic region of the meristem, characterized by higher rates of cell division.", "xrefs" : [ "ISBN:0521288959", "TAIR_curator:Leonore_Reiser" ] }, "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "zona periférica (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "周辺帯 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "peripheral meristem (related)" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0004010", "lbl" : "meristematic cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A native plant cell (PO:0025606) synthesizing protoplasm and producing new cells by division and with only a primary cell wall.", "xrefs" : [ "ISBN:0471245208", "POC:Laurel_Cooper" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#CL" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "célula meristemática (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "stem cell (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "分裂組織細胞 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "CL:0000034" }, { "val" : "PO_GIT:272" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0005029", "lbl" : "root primordium", "type" : "CLASS", "meta" : { "definition" : { "val" : "A primordium (PO:0025127) that develops from a root anlagen (PO:0025433) and is committed to the development of a root (PO:0009005).", "xrefs" : [ "ISBN:0521288959", "POC:curators" ] }, "comments" : [ "A root primordium may arise from cells of a pericycle (PO:0006203) in a root in most seed plant (pericyclic lateral root primordium; PO:0025492), from cells of an endodermis (PO:0000252) in ferns and some seed plants (non-pericyclic lateral root primordium: PO:0025493), or from cells of a shoot axis (PO:0025029), in the case of a basal root primordium (PO:0025479) or shoot-borne root primordium (PO:0025480). Transition from root primordium to root occurs with the formation of a root cap (PO:0020123), shortly after the development of a root apical meristem (PO:0020147)." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of root primordium tissue (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "primordio de raíz (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "root primordia (exact, plural)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "根原基（可視的） (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:467" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0005679", "lbl" : "epidermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of plant tissue (PO:0009007) composed of epidermal cells (PO:0004013) that develops from the protoderm (PO:0006210) and covers the surface of a plant structure (PO:0009011).", "xrefs" : [ "POC:curators" ] }, "comments" : [ "The epidermis can be composed of one or more layers of cells. In some species of vascular plants, the epidermis, which is a primary tissue, is replaced by periderm, which is secondary tissue, later in development. The epidermis can also include trichomes, stomatal pores, root hairs, and rhizoids." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dermal tissue (exact)" }, { "pred" : "hasExactSynonym", "val" : "epidermal layer (exact)" }, { "pred" : "hasExactSynonym", "val" : "epidermides (exact, plural)", "xrefs" : [ "FNA:35df04e5-fde5-465e-b79e-ae7d5e1537bb" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "epidermis (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "epidermises (exact, plural)", "xrefs" : [ "FNA:0d1bd0e6-c039-4de3-a162-68299a2f342a" ] }, { "pred" : "hasExactSynonym", "val" : "portion of epidermal tissue (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "表皮 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "multiseriate epidermis (related)" } ], "xrefs" : [ { "val" : "PO_GIT:109" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0006001", "lbl" : "phyllome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lateral plant organ (PO:0009008) produced by a shoot apical meristem (PO:0020148).", "xrefs" : [ "POC:curators" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet", "http://purl.obolibrary.org/obo/po#reference" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "filoma (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "フィロム、葉(的）器官 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0006016", "lbl" : "leaf epidermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of phyllome epidermis (PO:0025157) that is part of a leaf (PO:0025034).", "xrefs" : [ "POC:curators" ] }, "comments" : [ "If you are annotating to this term, please add an additional annotation to vascular leaf (PO:0009025) or non-vascular leaf (PO:0025075), depending on the species. All annotations for angiosperms, gymnosperms, and pteridophytes should go to vascular leaf and all annotations for bryophytes should go to non-vascular leaf." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "epidermis de la hoja (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "foliage leaf epidermis (exact)" }, { "pred" : "hasExactSynonym", "val" : "phyllid epidermis (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "葉表皮 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0006035", "lbl" : "shoot system epidermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of epidermis (PO:0005679) that is part of a shoot system (PO:0009006) and arises from the meristem L1 layer (PO:0009020).", "xrefs" : [ "ISBN:0471245208", "POC:Laurel_Cooper", "POC:curators" ] }, "comments" : [ "Often interrupted by stomatal complexes (PO:0002000) and other structures. The shoot system epidermis is different from the root epidermis (PO:0006036) in its origin, function and structure." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "epidermis del epiblasto (epiblastema) (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "シュート表皮 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:111" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0006036", "lbl" : "root epidermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of epidermis (PO:0005679) that is part of a root (PO:0009005).", "xrefs" : [ "ISBN:0080374913" ] }, "comments" : [ "The root epidermis is different from the shoot epidermis in its origin, function and structure." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "epidermis de la raíz (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "根表皮 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "epiblem (related)" }, { "pred" : "hasRelatedSynonym", "val" : "rhizodermis (related)" } ], "xrefs" : [ { "val" : "PO_GIT:111" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PO:0006037" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0006079", "lbl" : "shoot system meristem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of meristem tissue (PO:0009013) that is part of a shoot system (PO:0009006).", "xrefs" : [ "Gramene:Pankaj_Jaiswal", "POC:Laurel_Cooper" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "meristema del epiblasto (epiblastema) (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "シュート分裂組織 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:472" }, { "val" : "PO_GIT:583" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0006210", "lbl" : "protoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of meristem tissue (PO:0009013) that is the outer layer of an apical meristem (PO:0020144), or the outer layer of a plant embryo proper (PO:0000001), and gives rise to a portion of epidermis (PO:0005679).", "xrefs" : [ "ISBN:0471245208", "POC:Laurel_Cooper" ] }, "comments" : [ "A protoderm may or may not arise from independent initial cells (PO:0004011). Some researchers also refer to it as an epidermis in a meristematic state." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of protoderm tissue (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "protodermis (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "前表皮、原表皮 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "dermatogen cell (related)" } ], "xrefs" : [ { "val" : "PO_GIT:125" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0007033", "lbl" : "whole plant development stage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant structure development stage (PO:0009012) that has as primary participant a whole plant (PO:0000003).", "xrefs" : [ "POC:curators" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Solanaceae whole plant growth stages (SGN:0000001) (related)" }, { "pred" : "hasRelatedSynonym", "val" : "cereal plant growth stage ontology (GRO:0007199) (related)" }, { "pred" : "hasRelatedSynonym", "val" : "maize growth stage (GRO:0007002) (related)" }, { "pred" : "hasRelatedSynonym", "val" : "plant growth stages in Arabidopsis (TAIR:0000021) (related)" }, { "pred" : "hasRelatedSynonym", "val" : "rice growth stage (GRO:0007040) (related)" }, { "pred" : "hasRelatedSynonym", "val" : "sorghum growth stage (GRO:0007124) (related)" }, { "pred" : "hasRelatedSynonym", "val" : "wheat, barley and oat growth stage (GRO:0007156) (related)" } ], "xrefs" : [ { "val" : "PO_GIT:390" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_structure_development_stage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009002", "lbl" : "plant cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell which is a plant structure (PO:0009011).", "xrefs" : [ "GO:0005623", "POC:curators" ] }, "comments" : [ "Applies to cells that are living or dead at maturity (e.g., fiber cell or tracheid) and includes any external encapsulating structures (if present) such as the plasma membrane and the plant-type cell wall. Definition of cell GO:0005623: \"The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope\". GO:0009505. Definition of plant-type cell wall (GO:0009505): A more or less rigid structure lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances, synonym; exact: cellulose and pectin-containing cell wall." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#CL", "http://purl.obolibrary.org/obo/po#TraitNet", "http://purl.obolibrary.org/obo/po#reference" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cell (broad)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "célula vegetal (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物細胞 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "GO:0005623" }, { "val" : "PO_GIT:56" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009005", "lbl" : "root", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant axis (PO:0025004) that lacks shoot axis nodes (PO:0005004) and usually grows indeterminately.", "xrefs" : [ "ISBN:978-0879015329", "ISBN:9780964022157", "NYBG:Brandon_Sinn", "NYBG:Dario_Cavaliere", "POC:Laurel_Cooper", "POC:curators" ] }, "comments" : [ "Roots function in the absorption of water and inorganic nutrients, anchoring the plant body to the substrate and supporting it, storage of food and nutrients, and vegetative reproduction. The roots of most vascular plant species enter into symbiosis with soil-borne microorganisms. Roots are usually positively geotropic and found underground, although there are many exceptions such as the aerial roots of orchids. Roots often form secondary thickening from the root lateral meristem (PO:0006308). Commonly thought of as one of the three basic parts of the plant body, along with the shoot axis (PO:0025029) and leaves (PO:0025034)." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#Angiosperm", "http://purl.obolibrary.org/obo/po#Gymnosperms", "http://purl.obolibrary.org/obo/po#Maize", "http://purl.obolibrary.org/obo/po#Musa", "http://purl.obolibrary.org/obo/po#Potato", "http://purl.obolibrary.org/obo/po#Rice", "http://purl.obolibrary.org/obo/po#Tomato", "http://purl.obolibrary.org/obo/po#TraitNet", "http://purl.obolibrary.org/obo/po#reference" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "raíz (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "radices (exact, plural)", "xrefs" : [ "FNA:3c46e84c-23e4-416b-91cd-2f7c42e4b13d" ] }, { "pred" : "hasExactSynonym", "val" : "radix (exact)", "xrefs" : [ "FNA:e6315684-fc99-4976-b39d-b356c4b7e7fd" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "根 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasNarrowSynonym", "val" : "aerial root (narrow)" }, { "pred" : "hasNarrowSynonym", "val" : "climbing root (narrow)", "xrefs" : [ "FNA:bf0ce902-e91c-401a-92a8-26b20142ce5f" ] } ], "xrefs" : [ { "val" : "PO_GIT:578" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PO:0003006" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009006", "lbl" : "shoot system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A collective plant organ structure (PO:0025007) that produces shoot-borne portions of meristem tissue (PO:0009013) and the plant structures (PO:0009011) that arise from them.", "xrefs" : [ "POC:Laurel_Cooper", "POC:curators" ] }, "comments" : [ "The shoot system is generally used to refer to the above-ground plant parts, although some plants have parts of their shoot system underground. For example, a rhizome (PO:0004542), bulb (PO:0025356), a corm (PO:0025355) or a subterranean tuber (PO:0004547), as in Solanum tuberosum (potato) or yam, are all part of the shoot system." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet", "http://purl.obolibrary.org/obo/po#reference" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "sistema de epiblasto (epiblastema) (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "シュート系、苗条系 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasNarrowSynonym", "val" : "tree crown (narrow)" }, { "pred" : "hasRelatedSynonym", "val" : "Poaceae crown (related)" }, { "pred" : "hasRelatedSynonym", "val" : "shoot (related)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Plural", "pred" : "hasRelatedSynonym", "val" : "thalli (related)", "xrefs" : [ "FNA:d1431b5c-7b86-46a0-8d3c-bd426fe12c85" ] }, { "pred" : "hasRelatedSynonym", "val" : "thallus (related)", "xrefs" : [ "FNA:02756ad4-a09c-48d7-8754-903254e557a9" ] } ], "xrefs" : [ { "val" : "PO_GIT:135" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009007", "lbl" : "portion of plant tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant structure (PO:0009011) that consists predominantly of similarly specialized plant cells (PO:0009002) of one or more types.", "xrefs" : [ "POC:curators", "TAIR_curator:Leonore_Reiser" ] }, "comments" : [ "A portion of plant tissue may contain one or several types of cells that are organized in a specific spatial arrangement into a structural unit (which includes a mass of callus) and may include an intercellular matrix. May include other types of isolated cells, such as idioblasts." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet", "http://purl.obolibrary.org/obo/po#reference" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "portion of tissue (broad)" }, { "pred" : "hasBroadSynonym", "val" : "tissue (broad)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "porción de un tejido vegetal (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物組織の一部 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "plant tissue (related)" } ], "xrefs" : [ { "val" : "PO_GIT:59" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009008", "lbl" : "plant organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "A multi-tissue plant structure (PO:0025496) that is a functional unit, is a proper part of a whole plant (PO:0000003), and includes portions of plant tissue (PO:0009007) of at least two different types that derive from a common developmental path.", "xrefs" : [ "POC:curators" ] }, "comments" : [ "Examples include stem (PO:0009047), leaf (PO:0025034), and root (PO:0009005). May include individual plant cells (PO:0009002) that are not part of a portion of plant tissue (e.g., idioblasts, PO:0000283). A plant organ may have one or more different plant organs as parts, such as a sporophyll (PO:0009026) that may have as part a sporangium (PO:0025094) or a carpel (PO:0009030) that may have as part a plant ovule (PO:0020003)." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "organ (broad)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "órgano vegetal (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物 器官 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "compound plant organ (related)" }, { "pred" : "hasRelatedSynonym", "val" : "simple plant organ (related)", "xrefs" : [ "PATO:01503" ] } ], "xrefs" : [ { "val" : "PO_GIT:55" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009011", "lbl" : "plant structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant anatomical entity (PO:0025131) that is, or was, part of a plant, or was derived from a part of a plant.", "xrefs" : [ "CARO:0000003", "POC:curators" ] }, "comments" : [ "'Part' includes both proper parts and the whole plant. CARO:0000003 'connected anatomical structure' is defined as: Material anatomical entity that is a single connected structure with inherent 3D shape, generated by coordinated expression of the organism's own genome." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "estructura vegetal (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物 構造 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:57" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009012", "lbl" : "plant structure development stage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes.", "xrefs" : [ "BFO:0000003", "GO:0032502", "POC:curators" ] }, "comments" : [ "Refers to GO:0032502 'developmental process', which includes growth, differentiation, and senescence, and BFO:0000003 'ocurrent'." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "etapa de desarrollo de estructura vegetal (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "plant growth and development stage (exact)" }, { "pred" : "hasRelatedSynonym", "val" : "Arabidopsis growth (related)", "xrefs" : [ "TAIR:0000205" ] } ], "xrefs" : [ { "val" : "PO_GIT:185" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PO:0007021" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_structure_development_stage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009013", "lbl" : "portion of meristem tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of plant tissue (PO:0009007) in which plant cells (PO:0009002) have retained their embryonic characteristics, or have reverted to them secondarily, and that divide to produce new cells that can undergo differentiation to form mature tissues, i.e. they have a capacity for morphogenesis and growth.", "xrefs" : [ "APweb:Glossary", "Gramene:Pankaj_Jaiswal" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "meristem (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "meristema (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "meristematic tissue (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "分裂組織 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:472" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0009020", "lbl" : "meristem L1 layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of meristem tissue (PO:0009013) that is the outermost layer of a shoot apical meristem (PO:0020148) and gives rise to a shoot system epidermis (PO:0006035).", "xrefs" : [ "Gramene:Pankaj_Jaiswal", "PMID:11283725", "PMID:12221985", "POC:Laurel_Cooper" ] }, "comments" : [ "The cells of the meristem L1 layer divide in a strictly anticlinical fashion." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "meristema L1 (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "分裂組織 L1 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "tunica (related)" } ], "xrefs" : [ { "val" : "PO_GIT:150" }, { "val" : "PO_GIT:576" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0020144", "lbl" : "apical meristem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A maximal portion of meristem tissue (PO:0009013) located at a shoot apex (PO:0000037) or root tip (PO:0000025).", "xrefs" : [ "Gramene:Pankaj_Jaiswal", "POC:Laurel_Cooper", "POC:curators" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "promeristem (broad)" }, { "pred" : "hasExactSynonym", "val" : "AM (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "meristema apical (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "頂端分裂組織 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "primary meristem (related)" } ], "xrefs" : [ { "val" : "PO_GIT:579" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0020148", "lbl" : "shoot apical meristem", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shoot system meristem (PO:0006079) formed at the apex of the shoot axis (PO:0025029), including those originating from an axillary bud meristem (PO:0000232).", "xrefs" : [ "POC:Laurel_Cooper", "UMSL_curator:fz" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "promeristem (broad)" }, { "pred" : "hasExactSynonym", "val" : "SAM (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "meristema apical del epiblasto (epiblastema) (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "茎頂分裂組織 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "primary shoot meristem (related)" } ], "xrefs" : [ { "val" : "PO_GIT:472" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025004", "lbl" : "plant axis", "type" : "CLASS", "meta" : { "definition" : { "val" : "An axial plant organ (PO:0009008).", "xrefs" : [ "POC:curators" ] }, "comments" : [ "Includes roots and shoots." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "eje de la planta (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "plant axes (exact, plural)", "xrefs" : [ "FNA:2355281f-ab10-4ae2-a3d8-672cace068a8" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物軸（軸柱） (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-01T03:44:41Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025007", "lbl" : "collective plant organ structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A collective plant structure (PO:0025497) that is a proper part of a whole plant (PO:0000003), and is composed of two or more adjacent plant organs (PO:0009008) and the associated portions of plant tissue (PO:0009007).", "xrefs" : [ "POC:curators" ] }, "comments" : [ "Organs can be of the same type or different types. Examples include flower (PO:0009046), perianth (PO:0009058), and inflorescence (PO:0009049). See also collective organ part structure (PO:0025269), for plant structures composed of parts of multiple organs, but no complete plant organs. This was formerly named collective plant structure." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "estructura vegetal colectiva de órgano (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "集合植物器官構造 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:63" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-02-09T04:12:11Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025025", "lbl" : "root system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A collective plant organ structure (PO:0025007) that produces root meristems (PO:0006085), the plant structures (PO:0009011) that arise from them and the parts thereof.", "xrefs" : [ "POC:Laurel_Cooper", "POC:curators" ] }, "comments" : [ "Generally the below ground portion of a vascular plant." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "root (broad)", "xrefs" : [ "FNA:b7ce680b-c6ed-4d2e-81e6-66970f7deff9" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "sistema de raíz (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "根系 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:136" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-01T02:11:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025029", "lbl" : "shoot axis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant axis (PO:0025004) that is part of a shoot system (PO:0009006).", "xrefs" : [ "POC:curators" ] }, "comments" : [ "Often bears leaves and branches. In vascular plants, has at least one node and one internode." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#Angiosperm", "http://purl.obolibrary.org/obo/po#Arabidopsis", "http://purl.obolibrary.org/obo/po#Maize", "http://purl.obolibrary.org/obo/po#Poaceae", "http://purl.obolibrary.org/obo/po#Rice", "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "caullome (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "eje del epiblasto (epiblastema) (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "シュート軸 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] }, { "pred" : "hasRelatedSynonym", "val" : "shoot (related)" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-01T03:46:35Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025034", "lbl" : "leaf", "type" : "CLASS", "meta" : { "definition" : { "val" : "A phyllome (PO:0006001) that is not associated with a reproductive structure.", "xrefs" : [ "POC:curators" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "hoja (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "葉 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:274" }, { "val" : "PO_GIT:301" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-12T01:31:44Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025127", "lbl" : "primordium", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of meristem tissue (PO:0009013) that has as parts protoderm (PO:0006210) and sub-epidermal meristematic tissue and is committed to the development of a particular plant structure (PO:0009011).", "xrefs" : [ "POC:curators" ] }, "comments" : [ "A primordium appears as a protrusion and is the first distinct form of a plant organ (PO:0009008), cardinal organ part (PO:0025001), or collective plant organ structure (PO:0025007). The transition from a primordium to the plant structure it develops into is marked by the development of non-meristematic cells, although meristematic cells may be present after the transition." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of primordial tissue (exact)" }, { "pred" : "hasExactSynonym", "val" : "portion of primordium tissue (exact)" }, { "pred" : "hasExactSynonym", "val" : "primordia (exact, plural)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "primordio (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "原基（可視的） (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:186" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-15T09:10:22Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025128", "lbl" : "phyllome primordium", "type" : "CLASS", "meta" : { "definition" : { "val" : "A primordium (PO:0025127) that develops from a phyllome anlagen (PO:0025430) and is part of a shoot apex (PO:0000037) and is committed to the development of a phyllome (PO:0006001).", "xrefs" : [ "PMID:11572953", "POC:curators" ] }, "comments" : [ "The transition from phyllome primordium to phyllome occurs when the first non-meristematic tissue develops begins to develop." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "phyllome primordia (exact, plural)" }, { "pred" : "hasExactSynonym", "val" : "portion of phyllome primordium tissue (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "primordio del filoma (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "フィロム原基（可視的） (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:466" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-15T09:27:11Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025131", "lbl" : "plant anatomical entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical entity that is or was part of a plant.", "xrefs" : [ "BFO:0000004", "CARO:0000000", "POC:curators" ] }, "comments" : [ "Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "entidad anatómica vegetal (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物 解剖学（形態）的実体 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:224" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-15T11:41:38Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025157", "lbl" : "phyllome epidermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of shoot system epidermis (PO:0006035) that is part of a phyllome (PO:0006001).", "xrefs" : [ "POC:Laurel_Cooper", "POC:curators" ] }, "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "epidermis del filoma (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "フィロム表皮 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-15T02:32:53Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025161", "lbl" : "portion of plant substance", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of organism substance that is or was part of a plant.", "xrefs" : [ "CARO:0000004", "POC:curators" ] }, "comments" : [ "Refers to organism substance (CARO:0000004) which is defined as: Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism's own genome. For plants, the word \"body\" refers to a whole plant, or part thereof. Includes substances such as latex, xylem sap, phloem sap, resin, mucilage, oil, cuticle, cutin, and sporopollenin." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "porción de sustancia vegetal (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物を構成する物質の一部 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:206" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-11-18T07:32:44Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025337", "lbl" : "life of whole plant stage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A maximal whole plant development stage.", "xrefs" : [ "POC:curators" ] }, "comments" : [ "There are only two types of life of whole plant. Every life of a whole plant is either a maximal gametophyte stage or a maximal sporophyte stage." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "vida de la planta entera (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物体の一生 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:230" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-19T10:54:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_structure_development_stage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025385", "lbl" : "cutin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of plant substance (PO:0025161) that is the inner layer of a plant cuticle (PO:0000022), and is composed of a polyester matrix of hydroxy- and hydroxy epoxy fatty acid C16 and C18 chains.", "xrefs" : [ "PMID:12467640", "POC:curators" ] }, "comments" : [ "Cutin is the insoluble, covalently cross-linked polymer that forms an electron dense layer over the epidermal cells (PO:0004013) of an aerial plant structure." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cutin matrix (broad)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "クチン (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:416" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-06T02:53:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025386", "lbl" : "cuticular wax", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of plant substance (PO:0025161) comprised predominantly of very long chain aliphatic lipids and is part of a plant cuticle (PO:0000022).", "xrefs" : [ "PMID:12467640", "PO_Ref:00010" ] }, "comments" : [ "Also includes triterpenoids and minor secondary metabolites, such as sterols and flavonoids. May be embedded within or external to the layer of cutin of the cuticle proper. Phenotypically, wax is distinguished as the glaucous or whitish bloom on a part of a plant shoot system that corresponds to crystalloid epicuticular wax with light scattering capacity." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "cera cuticular (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "クチクラワックス (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:416" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-06T02:57:22Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025387", "lbl" : "plant cuticle proper", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of plant substance (PO:0025161) that is the inner layer of a plant cuticle (PO:0000022), composed primarily of cutin (PO:0025385), embedded and overlayed with cuticular wax (PO:0025386).", "xrefs" : [ "PMID:12467640", "POC:Laurel_Cooper" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cuticle proper (broad)" }, { "pred" : "hasBroadSynonym", "val" : "cutin matrix (broad)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "cutícula propia de la planta (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物クチクラproper (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:416" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-06T03:06:02Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025430", "lbl" : "phyllome anlagen", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of meristem tissue (PO:0009013) that is part of a peripheral zone (PO:0000225) of a shoot apical meristem (PO:0020148) and will give rise to a phyllome primordium (PO:0025128).", "xrefs" : [ "POC:Laurel_Cooper", "POC:curators" ] }, "comments" : [ "The phyllome anlagen is only detectable by gene expression, not morphology." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "phyllome meristem (broad)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "フィロム原基 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:427" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-02-07T08:20:10Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025433", "lbl" : "root anlagen", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of meristem tissue (PO:0009013) that is committed to the development of a root primordium (PO:0005029).", "xrefs" : [ "POC:curators" ] }, "comments" : [ "Only detectable by gene expression, not morphology. May arise in a pericycle (PO:0006203), as for lateral roots in most seed plants, an endodermis (PO:0000252), as for lateral roots in ferns, or from parenchyma cells (PO:0000074) that are part a shoot axis (PO:0025029), in the case of a basal root (PO:0025002) or shoot-borne root (PO:0000042)." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "precursor de raí (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "根原基 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:427" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-02-08T01:00:56Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025496", "lbl" : "multi-tissue plant structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant structure (PO:0009011) that has as parts two or more portions of plant tissue (PO:0009007) of at least two different types and which through specific morphogenetic processes forms a single structural unit demarcated by primarily bona-fide boundaries from other structural units of different types.", "xrefs" : [ "CARO:0000055", "POC:curators" ] }, "comments" : [ "Most multi-tissue plant structures have at least a small connection to other plant structures via a fiat boundary, such as where a leaf (PO:0025034) connects to a shoot axis (PO:0025029), a petal (PO:0009032) connects to a receptacle (PO:0009064), or a branch (PO:0025073) connects to a stem (PO:0009047). Refers to CARO:0000055 multi-tissue structure, def'n: Anatomical structure that has as parts two or more portions of tissue of at least two different types, and which through specific morphogenetic processes, form a single distinct structural unit demarcated by bona-fide boundries from other structural units of differnt types." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "estructura vegetal con múltiples tejidos (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "複数の組織からなる植物構造 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:480" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-06-11T14:57:00Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025497", "lbl" : "collective plant structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant structure (PO:0009011) that is a proper part of a whole plant (PO:0000003) and includes two or more adjacent plant organs (PO:0009008) or adjacent cardinal organ parts (PO:0025001), along with any associated portions of plant tissue (PO:0009007).", "xrefs" : [ "POC:curators" ] }, "comments" : [ "This is a parent term to describe both collective organ part structure (PO:0025269) (e.g. septum), as well as collective plant organ structure (PO:0025007) (which was formerly named collective plant structure), for example shoot system (PO:0009006)." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "estructura vegetal colectiva (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "集合的植物構造 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:479" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-06-11T15:09:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025538", "lbl" : "plant sap", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of plant substance (PO:0025161) that is an aqueous solution that can be transported through the apoplast (GO:0048046) or symplast (GO:0055044).", "xrefs" : [ "POC:Laurel_Cooper" ] }, "comments" : [ "Plant sap should not be confused with latex, resins or plant cell cytoplasm." ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "savia de la planta (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "植物液 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "GO:0048046" }, { "val" : "GO:0055044" }, { "val" : "PO_GIT:530" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-05T17:15:40Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025603", "lbl" : "plant resin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of plant substance (PO:0025161) that consists of a complex mixture of organic aromatic compounds such as mono-, sesqui-, and diterpenoids.", "xrefs" : [ "PMID:11337413", "POC:Laurel_Cooper" ] }, "comments" : [ "Plant resins are often produced by Gymnosperms but not restricted to those plants. In the conifers, plant resins are constitutively and inducibly produced through the secretory activity of resin cells (PO:0025604), and can be exuded through a resin canal (PO:0005665) to a site of injury or predator attack." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#Gymnosperms" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pitch (exact)" }, { "pred" : "hasRelatedSynonym", "val" : "oleoresin (related)" } ], "xrefs" : [ { "val" : "CHEBI:24913" }, { "val" : "CHEBI:26873" }, { "val" : "PO_GIT:587" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-04-10T09:51:14Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0025606", "lbl" : "native plant cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A plant cell (PO:0009002) that is either part of a multicellular whole plant (PO:0000003) 'in vivo' or a unicellular organism 'in natura' (i.e. part of a natural environment).", "xrefs" : [ "POC:Laurel_Cooper" ] }, "comments" : [ "A native plant cell is one that is not grown or maintained in vitro, nor part of an in vitro plant structure (PO:0000004)." ], "xrefs" : [ { "val" : "PO_GIT:586" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Laurel_Cooper" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-05-13T16:51:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_anatomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PO_0028002", "lbl" : "sporophyte development stage", "type" : "CLASS", "meta" : { "definition" : { "val" : "A whole plant development stage (PO:0007033) that has as primary participant a whole plant (PO:0000003) during the interval between fertilization (or apogamy) and death.", "xrefs" : [ "POC:curators" ] }, "comments" : [ "A whole plant (PO:0000003) in the sporophyte development stage usually has twice the chromosome complement of a plant in the gametophytic phase, but may not in the case of apogamy. Examples of apogamy include both naturally occurring instances (such as sporophytes arising form haploid cells as in bryophytes or ferns) as well as in vitro instances (such as haploid embryo culture or in vitro fusion of non-gamete cells or protoplasts). During the sporophyte development stage, a plant may produce meiospores by meiosis." ], "subsets" : [ "http://purl.obolibrary.org/obo/po#TraitNet" ], "synonyms" : [ { "synonymType" : "http://purl.obolibrary.org/obo/po#Spanish", "pred" : "hasExactSynonym", "val" : "fase esporofítica (Spanish, exact)", "xrefs" : [ "POC:Maria_Alejandra_Gandolfo" ] }, { "pred" : "hasExactSynonym", "val" : "sporophytic development stage (exact)" }, { "pred" : "hasExactSynonym", "val" : "sporophytic phase (exact)" }, { "pred" : "hasExactSynonym", "val" : "sporphyte phase (exact)" }, { "synonymType" : "http://purl.obolibrary.org/obo/po#Japanese", "pred" : "hasExactSynonym", "val" : "胞子体発生過程 (Japanese, exact)", "xrefs" : [ "NIG:Yukiko_Yamazaki" ] } ], "xrefs" : [ { "val" : "PO_GIT:139" }, { "val" : "PO_GIT:68" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "rwalls" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-15T02:56:11Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "plant_structure_development_stage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000052", "lbl" : "characteristic of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." }, "comments" : [ "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "inheres in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this fragility is a characteristic of this vase" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this red color is a characteristic of this apple" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "inheres_in" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000053", "lbl" : "has characteristic", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Inverse of characteristic_of" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "bearer of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this apple is bearer of this red color" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this vase is bearer of this fragility" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "bearer_of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is bearer of" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000056", "lbl" : "participates in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "participates in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this blood clot participates in this blood coagulation" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this input material (or this output material) participates in this process" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this investigator participates in this investigation" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "participates_in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000057", "lbl" : "has participant", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "has participant" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this blood coagulation has participant this blood clot" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this investigation has participant this investigator" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this process has participant this input material (or this output material)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_participant" }, { "pred" : "http://purl.org/dc/elements/1.1/source", "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000058", "lbl" : "is concretized as", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000059", "lbl" : "concretizes", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000079", "lbl" : "function of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence" }, "comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this catalysis function is a function of this enzyme" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "function_of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is function of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000080", "lbl" : "quality of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" }, "comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this red color is a quality of this apple" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A quality inheres in its bearer at all times for which the quality exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is quality of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "quality_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000081", "lbl" : "role of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" }, "comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this investigator role is a role of this person" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is role of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "role_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000085", "lbl" : "has function", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_function" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000086", "lbl" : "has quality", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this apple has quality this red color" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000087", "lbl" : "has role", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this person has role this investigator role (more colloquially: this person has this role of investigator)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has_role" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000091", "lbl" : "has disposition", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence" } } }, { "id" : "http://purl.obolibrary.org/obo/RO_0000092", "lbl" : "disposition of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of has disposition" }, "comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ], "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0001000", "lbl" : "derives from", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this cell derives from this parent cell (cell division)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this nucleus derives from this parent nucleus (nuclear division)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "derives_from" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0001001", "lbl" : "derives into", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this parent cell derives into this cell (cell division)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this parent nucleus derives into this nucleus (nuclear division)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "derives_into" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0001015", "lbl" : "location of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "is location of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my head is the location of my brain" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this cage is the location of this rat" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "location_of" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0001018", "lbl" : "contained in", "type" : "PROPERTY", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "contained in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "contained_in" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0001019", "lbl" : "contains", "type" : "PROPERTY", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "contains" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0001025", "lbl" : "located in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "located in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my brain is located in my head" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this rat is located in this cage" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "located_in" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://purl.org/dc/elements/1.1/source", "val" : "http://www.obofoundry.org/ro/#OBO_REL:located_in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0001900", "lbl" : "temporal interpretation", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context." }, "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002007", "lbl" : "bounding layer of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "X outer_layer_of Y iff:\n. X :continuant that bearer_of some PATO:laminar\n. X part_of Y\n. exists Z :surface\n. X has_boundary Z\n. Z boundary_of Y\n\nhas_boundary: http://purl.obolibrary.org/obo/RO_0002002\nboundary_of: http://purl.obolibrary.org/obo/RO_0002000" }, "comments" : [ "A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane." ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002008", "lbl" : "coincident with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relation that holds between two linear structures that are approximately parallel to each other for their entire length and where either the two structures are adjacent to each other or one is part of the other." }, "comments" : [ "Example: if we define region of chromosome as any subdivision of a chromosome along its long axis, then we can define a region of chromosome that contains only gene x as 'chromosome region' that coincident_with some 'gene x', where the term gene X corresponds to a genomic sequence." ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Note from NCEAS meeting: consider changing primary label" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002013", "lbl" : "has regulatory component activity", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-05-24T09:30:46Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002014", "lbl" : "has negative regulatory component activity", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." }, "comments" : [ "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-05-24T09:31:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002015", "lbl" : "has positive regulatory component activity", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." }, "comments" : [ "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-05-24T09:31:17Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002017", "lbl" : "has component activity", "type" : "PROPERTY", "meta" : { "comments" : [ "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-05-24T09:44:33Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002018", "lbl" : "has component process", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-05-24T09:49:21Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002022", "lbl" : "directly regulated by", "type" : "PROPERTY", "meta" : { "comments" : [ "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-09-17T13:52:24Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002023", "lbl" : "directly negatively regulated by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-09-17T13:52:38Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002024", "lbl" : "directly positively regulated by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-09-17T13:52:47Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002025", "lbl" : "has effector activity", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", "xrefs" : [ "GOC:dos" ] }, "comments" : [ "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-09-22T14:14:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002084", "lbl" : "during which ends", "type" : "PROPERTY", "meta" : { "comments" : [ "Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range." ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002085", "lbl" : "encompasses", "type" : "PROPERTY", "meta" : { "comments" : [ "Previously had ID http://purl.obolibrary.org/obo/RO_0002124 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "di" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002086", "lbl" : "ends after", "type" : "PROPERTY", "meta" : { "comments" : [ "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002087", "lbl" : "immediately preceded by", "type" : "PROPERTY", "meta" : { "comments" : [ "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "starts_at_end_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002088", "lbl" : "during which starts", "type" : "PROPERTY", "meta" : { "comments" : [ "Previously had ID http://purl.obolibrary.org/obo/RO_0002123 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range." ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002090", "lbl" : "immediately precedes", "type" : "PROPERTY", "meta" : { "comments" : [ "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "ends_at_start_of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "meets" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002575", "val" : "http://purl.obolibrary.org/obo/BFO_0000063" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002091", "lbl" : "starts during", "type" : "PROPERTY", "meta" : { "comments" : [ "X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y))" ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "io" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002092", "lbl" : "happens during", "type" : "PROPERTY", "meta" : { "comments" : [ "X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y))" ], "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "d" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "during" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002093", "lbl" : "ends during", "type" : "PROPERTY", "meta" : { "comments" : [ "X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y). " ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "o" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "overlaps" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002131", "lbl" : "overlaps", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x overlaps y if and only if there exists some z such that x has part z and z part of y" }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002150", "lbl" : "continuous with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "X continuous_with Y if and only if X and Y share a fiat boundary." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "connected to" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "The label for this relation was previously connected to. I relabeled this to \"continuous with\". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "FMA:85972" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002151", "lbl" : "partially overlaps", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x partially overlaps y iff there exists some z such that z is part of x and z is part of y, and it is also the case that neither x is part of y or y is part of x" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We would like to include disjointness axioms with part_of and has_part, however this is not possible in OWL2 as these are non-simple properties and hence cannot appear in a disjointness axiom" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "proper overlaps" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000426", "val" : "(forall (?x ?y) \n\t(iff \n\t\t(proper_overlaps ?x ?y)\n\t\t(and \n\t\t\t(overlaps ?x ?y)\n\t\t\t(not (part_of ?x ?y)) \n\t\t\t(not (part_of ?y ?x)))))" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002162", "lbl" : "in taxon", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed." }, "comments" : [ "Connects a biological entity to its taxon of origin." ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Jennifer Deegan" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/17921072" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20973947" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002163", "lbl" : "spatially disjoint from", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A is spatially_disjoint_from B if and only if they have no parts in common" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. " }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", "val" : "BFO_0000051 exactly 0 (BFO_0000050 some ?Y)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002170", "lbl" : "connected to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002176", "lbl" : "connects", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "The M8 connects Glasgow and Edinburgh" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002177", "lbl" : "attached to part of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "attached to part of (anatomical structure to anatomical structure)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002179", "lbl" : "drains", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Relation between an collecting structure and another structure, where the collecting structure acts as a conduit channeling fluid, substance or energy away from the other structure." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between a vein and an anatomical structure" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002180", "lbl" : "has component", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002202", "lbl" : "develops from", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" }, "comments" : [ "This is the transitive form of the develops from relation" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Melissa Haendel" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Terry Meehan" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002203", "lbl" : "develops into", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of develops from" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Terry Meehan" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002207", "lbl" : "directly develops from", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y." }, "comments" : [ "TODO - add child relations from DOS" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "has developmental precursor" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "FBbt" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002575", "val" : "http://purl.obolibrary.org/obo/RO_0002202" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002210", "lbl" : "directly develops into", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of directly develops from" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "developmental precursor of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002211", "lbl" : "regulates (processual)", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Hill" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Tanya Berardini" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "GO" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "regulates (processual)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", "val" : "false" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002212", "lbl" : "negatively regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "negatively regulates (process to process)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004050", "val" : "http://purl.obolibrary.org/obo/RO_0002211" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002213", "lbl" : "positively regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "positively regulates (process to process)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004049", "val" : "http://purl.obolibrary.org/obo/RO_0002211" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002215", "lbl" : "capable of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has function realized in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002216", "lbl" : "capable of part of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has function in" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ro/docs/reflexivity/" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002217", "lbl" : "obsolete actively participates in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "OBSOLETE x actively participates in y if and only if x participates in y and x realizes some active role" }, "comments" : [ "Obsoleted as the inverse property was obsoleted." ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "agent in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/RO_0002608" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002218", "lbl" : "obsolete has active participant", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "OBSOLETE x has participant y if and only if x realizes some active role that inheres in y" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has agent" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/RO_0002500" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002219", "lbl" : "surrounded by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002220", "lbl" : "adjacent to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x adjacent to y if and only if x and y share a boundary." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "The epidermis layer of a vertebrate is adjacent to the dermis." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This relation acts as a join point with BSPO" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002221", "lbl" : "surrounds", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of surrounded by" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002222", "lbl" : "temporally related to", "type" : "PROPERTY", "meta" : { "comments" : [ "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." }, { "pred" : "http://purl.org/dc/terms/source", "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002223", "lbl" : "starts", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of starts with" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "Allen" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002224", "lbl" : "starts with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "started by" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002225", "lbl" : "develops from part of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x develops from part of y if and only if there exists some z such that x develops from z and z is part of y" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002226", "lbl" : "develops in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x develops_in y if x is located in y whilst x is developing" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "EHDAA2" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "Jonathan Bard, EHDAA2" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002229", "lbl" : "ends", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of ends with" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002230", "lbl" : "ends with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "finished by" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002231", "lbl" : "has start location", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "starts with process that occurs in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002232", "lbl" : "has end location", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "ends with process that occurs in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002233", "lbl" : "has input", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "consumes" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002234", "lbl" : "has output", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "produces" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002254", "lbl" : "has developmental contribution from", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x has developmental contribution from y iff x has some part z such that z develops from y" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002255", "lbl" : "developmentally contributes to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of has developmental contribution from" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002258", "lbl" : "developmentally preceded by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" }, "comments" : [ "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "false" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002263", "lbl" : "acts upstream of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002264", "lbl" : "acts upstream of or within", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "affects" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002286", "lbl" : "developmentally succeeded by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Inverse of developmentally preceded by" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002287", "lbl" : "part of developmental precursor of", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002295", "lbl" : "results in developmental progression of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://wiki.geneontology.org/index.php/Ontology_extensions" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002297", "lbl" : "results in formation of", "type" : "PROPERTY", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "GOC:mtg_berkeley_2013" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002303", "lbl" : "has habitat", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs." }, "comments" : [ "A population of xs will possess adaptations (either evolved naturally or via artifical selection) which permit it to exist and grow in y." ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Hydrozoa (NCBITaxon_6074) SubClassOf 'has habitat' some 'Hydrozoa habitat'\nwhere\n'Hydrozoa habitat' SubClassOf overlaps some ('marine environment' (ENVO_00000569) and 'freshwater environment' (ENVO_01000306) and 'wetland' (ENVO_00000043)) and 'has part' some (freshwater (ENVO_00002011) or 'sea water' (ENVO_00002149)) -- http://eol.org/pages/1795/overview" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Pier Buttigieg" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "adapted for living in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002304", "lbl" : "causally upstream of, positive effect", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q." }, "comments" : [ "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" ], "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0004049", "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "pred" : "http://purl.org/dc/terms/creator", "val" : "cjm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002305", "lbl" : "causally upstream of, negative effect", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0004050", "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "pred" : "http://purl.org/dc/terms/creator", "val" : "cjm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002314", "lbl" : "characteristic of part of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "inheres in part of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ro/docs/reflexivity/" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002320", "lbl" : "evolutionarily related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds via some environmental process" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002321", "lbl" : "ecologically related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002323", "lbl" : "mereotopologically related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A mereological relationship or a topological relationship" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002324", "lbl" : "developmentally related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002326", "lbl" : "contributes to", "type" : "PROPERTY", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002327", "lbl" : "enables", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c enables p iff c is capable of p and c acts to execute p." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "catalyzes" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "executes" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "has" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is catalyzing" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is executing" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002328", "lbl" : "functionally related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002329", "lbl" : "part of structure that is capable of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "false" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002331", "lbl" : "involved in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved_in p if and only if c enables some process p', and p' is part of p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "actively involved in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "enables part of" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://wiki.geneontology.org/index.php/Involved_in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002333", "lbl" : "enabled by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of enables" }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002334", "lbl" : "regulated by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of regulates" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "regulated by (processual)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002335", "lbl" : "negatively regulated by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of negatively regulates" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002336", "lbl" : "positively regulated by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of positively regulates" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002350", "lbl" : "member of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "is member of is a mereological relation between a item and a collection." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "An organism that is a member of a population of organisms" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is member of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "member part of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "SIO" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002351", "lbl" : "has member", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "has member is a mereological relation between a collection and an item." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "SIO" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002352", "lbl" : "input of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of has input" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002353", "lbl" : "output of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of has output" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002354", "lbl" : "formed as result of", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002371", "lbl" : "attached to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a" }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "attached to (anatomical structure to anatomical structure)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002375", "lbl" : "in branching relationship with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004036", "val" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ro/docs/branching_part_of.png" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "https://github.com/obophenotype/uberon/issues/170" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002376", "lbl" : "tributary of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x tributary_of y if and only if x a channel for the flow of a substance into y, where y is larger than x. If x and y are hydrographic features, then y is the main stem of a river, or a lake or bay, but not the sea or ocean. If x and y are anatomical, then y is a vein." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Deschutes River tributary_of Columbia River" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "inferior epigastric vein tributary_of external iliac vein" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "drains into" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "drains to" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "tributary channel of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://en.wikipedia.org/wiki/Tributary" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.medindia.net/glossary/venous_tributary.htm" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (veins, arteries)" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://dbpedia.org/ontology/drainsTo" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://en.wikipedia.org/wiki/Tributary" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002377", "lbl" : "distributary of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x distributary_of y if and only if x is capable of channeling the flow of a substance to y, where y channels less of the substance than x" }, "comments" : [ "This is both a mereotopological relationship and a relationship defined in connection to processes. It concerns both the connecting structure, and how this structure is disposed to causally affect flow processes" ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "Deschutes River distributary_of Little Lava Lake" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "branch of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "distributary channel of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://en.wikipedia.org/wiki/Distributary" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002379", "lbl" : "spatially coextensive with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x spatially_coextensive_with y if and inly if x and y have the same location" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A lump of clay and a statue" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002384", "lbl" : "has developmental potential involving", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002385", "lbl" : "has potential to developmentally contribute to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002387", "lbl" : "has potential to develop into", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002388", "lbl" : "has potential to directly develop into", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002404", "lbl" : "causally downstream of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of upstream of" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002405", "lbl" : "immediately causally downstream of", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002407", "lbl" : "indirectly positively regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "indirectly activates" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002579", "val" : "http://purl.obolibrary.org/obo/RO_0002213" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002409", "lbl" : "indirectly negatively regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "indirectly inhibits" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002579", "val" : "http://purl.obolibrary.org/obo/RO_0002212" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002410", "lbl" : "causally related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.", "xrefs" : [ "https://en.wikipedia.org/wiki/Causality" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative?\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002411", "lbl" : "causally upstream of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002412", "lbl" : "immediately causally upstream of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002575", "val" : "http://purl.obolibrary.org/obo/RO_0002411" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002418", "lbl" : "causally upstream of or within", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "affects" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "influences (processual)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002427", "lbl" : "causally downstream of or within", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of causally upstream of or within" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002428", "lbl" : "involved in regulation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002429", "lbl" : "involved in positive regulation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004049", "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002430", "lbl" : "involved in negative regulation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004050", "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002431", "lbl" : "involved in or involved in regulation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "OWL does not allow defining object properties via a Union" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "involved in or reguates" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002432", "lbl" : "is active in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", "xrefs" : [ "GOC:cjm", "GOC:dos" ] }, "comments" : [ "" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "enables activity in" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A protein that enables activity in a cytosol." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "executes activity in" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002434", "lbl" : "interacts with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "in pairwise interaction with" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Considering relabeling as 'pairwise interacts with'" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" }, { "pred" : "http://www.w3.org/2004/02/skos/core#closeMatch", "val" : "http://purl.obolibrary.org/obo/MI_0914" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002436", "lbl" : "molecularly interacts with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "binds" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "molecularly binds with" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ECO_0000353" }, { "pred" : "http://www.w3.org/2004/02/skos/core#closeMatch", "val" : "http://purl.obolibrary.org/obo/MI_0915" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002437", "lbl" : "biotically interacts with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "An interaction relationship in which at least one of the partners is an organism and the other is either an organism or an abiotic entity with which the organism interacts." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "interacts with on organism level" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://dx.doi.org/10.1016/j.ecoinf.2014.08.005" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://eol.org/schema/terms/interactsWith" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002438", "lbl" : "trophically interacts with", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "An interaction relationship in which the partners are related via a feeding relationship." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://dx.doi.org/10.1016/j.ecoinf.2014.08.005" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002447", "lbl" : "phosphorylates", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Axiomatization to GO to be added later" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002448", "lbl" : "directly regulates activity of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.\n\nA and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "molecularly controls" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Vasundra Touré" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002449", "lbl" : "directly negatively regulates activity of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. \nFor example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "molecularly decreases activity of" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Vasundra Touré" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "directly inhibits" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002450", "lbl" : "directly positively regulates activity of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. \nFor example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "molecularly increases activity of" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Vasundra Touré" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "directly activates" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002457", "lbl" : "acquires nutrients from", "type" : "PROPERTY", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Intended to be used when the target of the relation is not itself consumed, and does not have integral parts consumed, but provided nutrients in some other fashion." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002464", "lbl" : "helper property (not for use in curation)", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002469", "lbl" : "provides nutrients for", "type" : "PROPERTY", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002473", "lbl" : "composed primarily of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002479", "lbl" : "has part that occurs in", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002481", "lbl" : "is kinase activity", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002494", "lbl" : "transformation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002495", "lbl" : "immediate transformation of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002575", "val" : "http://purl.obolibrary.org/obo/RO_0002494" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002500", "lbl" : "causal agent in process", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002501", "lbl" : "causal relation between processes", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002502", "lbl" : "depends on", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/BFO_0000169" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002503", "lbl" : "towards", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "q towards e2 if and only if q is a relational quality such that q inheres-in some e, and e != e2 and q is dependent on e2" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "This relation is provided in order to support the use of relational qualities such as 'concentration of'; for example, the concentration of C in V is a quality that inheres in V, but pertains to C." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002506", "lbl" : "causal relation between entities", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002507", "lbl" : "determined by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "A coral reef environment is determined by a particular coral reef" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.ncbi.nlm.nih.gov/pubmed/24330602" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "determined by (system to material entity)" }, { "pred" : "http://purl.org/dc/terms/creator", "val" : "Chris Mungall" }, { "pred" : "http://purl.org/dc/terms/creator", "val" : "Pier Buttigieg" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002508", "lbl" : "determines", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "inverse of determined by" }, "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "determines (material entity to system)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002509", "lbl" : "determined by part of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002559", "lbl" : "causally influenced by", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "causally influenced by (entity-centric)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002563", "lbl" : "interaction relation helper property", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002564", "lbl" : "molecular interaction relation helper property", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002566", "lbl" : "causally influences", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size)." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Vasundra Touré" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "causally influences (entity-centric)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002567", "lbl" : "biomechanically related to", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relation that holds between elements of a musculoskeletal system or its analogs." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes." } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002574", "lbl" : "participates in a biotic-biotic interaction with", "type" : "PROPERTY", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://dx.doi.org/10.1016/j.ecoinf.2014.08.005" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002577", "lbl" : "system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity consisting of multiple components that are causally integrated." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://www.jbiomedsem.com/content/4/1/43" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002578", "lbl" : "directly regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p directly regulates q iff p is immediately causally upstream of q and p regulates q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "directly regulates (processual)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002575", "val" : "http://purl.obolibrary.org/obo/RO_0002211" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002581", "lbl" : "is a defining property chain axiom", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL" } } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002582", "lbl" : "is a defining property chain axiom where second argument is reflexive", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R." } } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002584", "lbl" : "has part structure that is capable of", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002595", "lbl" : "causal relation between material entity and a process", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002596", "lbl" : "capable of regulating", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "pyrethroid -> growth" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002597", "lbl" : "capable of negatively regulating", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002598", "lbl" : "capable of positively regulating", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "renin -> arteriolar smooth muscle contraction" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002608", "lbl" : "process has causal agent", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Inverse of 'causal agent in process'" }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002629", "lbl" : "directly positively regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "directly positively regulates (process to process)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004049", "val" : "http://purl.obolibrary.org/obo/RO_0002578" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0002630", "lbl" : "directly negatively regulates", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q." }, "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "directly negatively regulates (process to process)" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0004050", "val" : "http://purl.obolibrary.org/obo/RO_0002578" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0003000", "lbl" : "produces", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." }, "comments" : [ "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." ], "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Melissa Haendel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0003001", "lbl" : "produced by", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "a produced_by b iff some process that occurs_in b has_output a." }, "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Melissa Haendel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0004028", "lbl" : "realized in response to stimulus", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-26T19:45:49Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0004031", "lbl" : "enables subfunction", "type" : "PROPERTY", "meta" : { "definition" : { "val" : "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-01-25T23:20:13Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0004032", "lbl" : "acts upstream of or within, positive effect", "type" : "PROPERTY", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0004049", "val" : "http://purl.obolibrary.org/obo/RO_0002264" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-01-26T23:49:30Z" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0004033", "lbl" : "acts 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"2018-01-26T23:53:22Z" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0004046", "lbl" : "causally upstream of or within, negative effect", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0004050", "val" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2018-03-13T23:55:05Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/RO_0004047", "lbl" : "causally upstream of or within, positive effect", "type" : "PROPERTY", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0004049", "val" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "pred" : 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In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "regio oralis" }, { "pred" : "hasNarrowSynonym", "val" : "adult mouth" }, { "pred" : "hasRelatedSynonym", "val" : "cavital oralis" }, { "pred" : "hasRelatedSynonym", "val" : "cavitas oris" }, { "pred" : "hasRelatedSynonym", "val" : "cavum oris" }, { "pred" : "hasRelatedSynonym", "val" : "mouth cavity" }, { "pred" : "hasRelatedSynonym", "val" : "oral region" }, { "pred" : "hasRelatedSynonym", "val" : "oral vestibule" }, { "pred" : "hasRelatedSynonym", "val" : "rima oris" }, { "pred" : "hasRelatedSynonym", "val" : "stoma" }, { "pred" : "hasRelatedSynonym", "val" : "stomatodaeum" }, { "pred" : "hasRelatedSynonym", "val" : "trophic apparatus" }, { "pred" : "hasRelatedSynonym", "val" : "vestibule of mouth" }, { "pred" : "hasRelatedSynonym", "val" : "vestibulum oris" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000166", "lbl" : "oral opening", "type" : "CLASS", "meta" : { "definition" : { "val" : "The orifice that connects the mouth to the exterior of the body." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "oral fissure" }, { "pred" : "hasExactSynonym", "val" : "oral orifice" }, { "pred" : "hasRelatedSynonym", "val" : "mouth" }, { "pred" : "hasRelatedSynonym", "val" : "oral part of face" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000172", "lbl" : "vomit", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid consisting of the expulsed contents of the stomach disgorged through the mouth or nose that happens as a result of a vomit reflex." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vomitus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000173", "lbl" : "amniotic fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "acqua amnii" }, { "pred" : "hasRelatedSynonym", "val" : "liquor amnii" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000174", "lbl" : "excreta", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of organism substance that is the product of an excretion process that will be eliminated from the body. An excretion process is elimination by an organism of the waste products that arise as a result of metabolic activity." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "excreted substance" }, { "pred" : "hasExactSynonym", "val" : "portion of excreted substance" }, { "pred" : "hasExactSynonym", "val" : "waste substance" }, { "pred" : "hasRelatedSynonym", "val" : "excretion" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000175", "lbl" : "pleural effusion", "type" : "CLASS", "meta" : { "definition" : { "val" : "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000176", "lbl" : "oronasal secretion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bodily fluid secreted from the body via the mouth or nose." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "oronasal discharge" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000177", "lbl" : "pus", "type" : "CLASS", "meta" : { "definition" : { "val" : "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "purulent exudate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000178", "lbl" : "blood", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluid that is composed of blood plasma and erythrocytes." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of blood" }, { "pred" : "hasExactSynonym", "val" : "vertebrate blood" }, { "pred" : "hasRelatedSynonym", "val" : "whole blood" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000179", "lbl" : "haemolymphatic fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "blood or blood analog" }, { "pred" : "hasRelatedSynonym", "val" : "circulating fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000307", "lbl" : "blastula", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blastula embryo" }, { "pred" : "hasRelatedSynonym", "val" : "blastosphere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000323", "lbl" : "late embryo", "type" : "CLASS", "meta" : { "definition" : { "val" : "An embryo that is at the late embryonic stage; this stage covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "fetus" }, { "pred" : "hasRelatedSynonym", "val" : "embryo late growth stage" }, { "pred" : "hasRelatedSynonym", "val" : "embryo late stage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000328", "lbl" : "gut wall", "type" : "CLASS", "meta" : { "definition" : { "val" : "The wall of the digestive tract. This encompasses all parts of the digestive tract with the exception of the lumen (cavity)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "digestive tract wall" }, { "pred" : "hasExactSynonym", "val" : "wall of digestive tract" }, { "pred" : "hasExactSynonym", "val" : "wall of gut" }, { "pred" : "hasRelatedSynonym", "val" : "wall of alimentary tract" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000344", "lbl" : "mucosa", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ part" }, { "pred" : "hasExactSynonym", "val" : "mucosal region" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "organ mucosa" }, { "pred" : "hasRelatedSynonym", "val" : "region of mucosa" }, { "pred" : "hasRelatedSynonym", "val" : "tunica mucosa" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000349", "lbl" : "limbic system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "visceral brain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000383", "lbl" : "musculature of body", "type" : "CLASS", "meta" : { "definition" : { "val" : "The subdivision of the musculoskeletal system that consists of all the muscles of the body[VSAO, modified]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscle system" }, { "pred" : "hasExactSynonym", "val" : "muscle system of body" }, { "pred" : "hasExactSynonym", "val" : "muscular system" }, { "pred" : "hasExactSynonym", "val" : "musculature system" }, { "pred" : "hasExactSynonym", "val" : "set of all muscles" }, { "pred" : "hasExactSynonym", "val" : "set of muscles of body" }, { "pred" : "hasExactSynonym", "val" : "vertebrate muscular system" }, { "pred" : "hasRelatedSynonym", "val" : "muskelsystem" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000456", "lbl" : "secretion of exocrine gland", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of organism substance that is produced by exocrine glands." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "secretion" }, { "pred" : "hasExactSynonym", "val" : "bodily secretion" }, { "pred" : "hasExactSynonym", "val" : "exocrine gland fluid/secretion" }, { "pred" : "hasExactSynonym", "val" : "secreted substance" }, { "pred" : "hasRelatedSynonym", "val" : "exocrine gland fluid" }, { "pred" : "hasRelatedSynonym", "val" : "exocrine gland fluid or secretion" }, { "pred" : "hasRelatedSynonym", "val" : "exocrine gland secretion" }, { "pred" : "hasRelatedSynonym", "val" : "external secretion" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000463", "lbl" : "organism substance", "type" : "CLASS", "meta" : { "definition" : { "val" : "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "body fluid or substance" }, { "pred" : "hasExactSynonym", "val" : "body substance" }, { "pred" : "hasExactSynonym", "val" : "organism substance" }, { "pred" : "hasExactSynonym", "val" : "portion of body substance" }, { "pred" : "hasExactSynonym", "val" : "portion of organism substance" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000464", "lbl" : "anatomical space", "type" : "CLASS", "meta" : { "definition" : { "val" : "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "lumen" }, { "pred" : "hasBroadSynonym", "val" : "space" }, { "pred" : "hasExactSynonym", "val" : "lumen space" }, { "pred" : "hasRelatedSynonym", "val" : "anatomical spaces" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000465", "lbl" : "material anatomical entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical entity that has mass." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000466", "lbl" : "immaterial anatomical entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical entity that has no mass." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "immaterial physical anatomical entity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000467", "lbl" : "anatomical system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "system" }, { "pred" : "hasExactSynonym", "val" : "body system" }, { "pred" : "hasExactSynonym", "val" : "connected anatomical system" }, { "pred" : "hasExactSynonym", "val" : "organ system" }, { "pred" : "hasRelatedSynonym", "val" : "anatomical systems" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000468", "lbl" : "multicellular organism", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that is an individual member of a species and consists of more than one cell." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "organism" }, { "pred" : "hasExactSynonym", "val" : "multi-cellular organism" }, { "pred" : "hasRelatedSynonym", "val" : "Koerper" }, { "pred" : "hasRelatedSynonym", "val" : "body" }, { "pred" : "hasRelatedSynonym", "val" : "whole body" }, { "pred" : "hasRelatedSynonym", "val" : "whole organism" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000475", "lbl" : "organism subdivision", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anatomic region" }, { "pred" : "hasRelatedSynonym", "val" : "body part" }, { "pred" : "hasRelatedSynonym", "val" : "body region" }, { "pred" : "hasRelatedSynonym", "val" : "cardinal body part" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000476", "lbl" : "acellular anatomical structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "acellular anatomical structures" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000477", "lbl" : "anatomical cluster", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical group that has its parts adjacent to one another." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000478", "lbl" : "extraembryonic structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "extra-embryonic structure" }, { "pred" : "hasRelatedSynonym", "val" : "extraembryonic structures" }, { "pred" : "hasRelatedSynonym", "val" : "extraembryonic tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000479", "lbl" : "tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of tissue" }, { "pred" : "hasExactSynonym", "val" : "tissue portion" }, { "pred" : "hasNarrowSynonym", "val" : "simple tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000481", "lbl" : "multi-tissue structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "multi-tissue structures" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000483", "lbl" : "epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "portion of epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000484", "lbl" : "simple cuboidal epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Unilaminar epithelium that consists of a single layer of cuboidal cells." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelium simplex cuboideum" }, { "pred" : "hasRelatedSynonym", "val" : "simple cuboidal epithelia" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000485", "lbl" : "simple columnar epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "columnar epithelium" }, { "pred" : "hasBroadSynonym", "val" : "columnar epithlium" }, { "pred" : "hasExactSynonym", "val" : "epithelium simplex columnare" }, { "pred" : "hasExactSynonym", "val" : "simple columnar epithelium" }, { "pred" : "hasRelatedSynonym", "val" : "simple columnar epithelia" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000486", "lbl" : "multilaminar epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "stratified epithelium" }, { "pred" : "hasRelatedSynonym", "val" : "laminated epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000488", "lbl" : "atypical epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium that consists of epithelial cells not arranged in one ore more layers." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "heterogenous epithelium" }, { "pred" : "hasRelatedSynonym", "val" : "atypical epithelia" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000489", "lbl" : "cavitated compound organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "Compound organ that contains one or more macroscopic anatomical spaces." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cavitated organ" }, { "pred" : "hasRelatedSynonym", "val" : "cavitated compound organs" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000490", "lbl" : "unilaminar epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "simple epithelium" }, { "pred" : "hasRelatedSynonym", "val" : "unilaminar epithelia" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000910", "lbl" : "chyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "A semifluid mass of partly digested food expelled by the stomach into the duodenum." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chymus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000911", "lbl" : "chyle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000912", "lbl" : "mucus", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000913", "lbl" : "interstitial fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "intercellular fluid" }, { "pred" : "hasExactSynonym", "val" : "tissue fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000915", "lbl" : "thoracic segment of trunk", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of trunk that lies between the head and the abdomen." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "thorax" }, { "pred" : "hasRelatedSynonym", "val" : "anterior subdivision of trunk" }, { "pred" : "hasRelatedSynonym", "val" : "upper body" }, { "pred" : "hasRelatedSynonym", "val" : "upper trunk" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000922", "lbl" : "embryo", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "embryonic organism" }, { "pred" : "hasRelatedSynonym", "val" : "developing organism" }, { "pred" : "hasRelatedSynonym", "val" : "developmental tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000923", "lbl" : "germ layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "embryonic tissue" }, { "pred" : "hasExactSynonym", "val" : "germinal layer" }, { "pred" : "hasNarrowSynonym", "val" : "primary germ layer" }, { "pred" : "hasRelatedSynonym", "val" : "embryonic germ layer" }, { "pred" : "hasRelatedSynonym", "val" : "embryonic germ layers" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000924", "lbl" : "ectoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "embryonic ectoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000925", "lbl" : "endoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "entoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000926", "lbl" : "mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "The middle germ layer of the embryo, between the endoderm and ectoderm." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "embryonic mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "entire mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "mesodermal mantle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000930", "lbl" : "stomodeum", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anterior part of the embryonic digestive tract that develops into a mouth. The stomodeum includes as parts an invagination of the ectoderm and the stomodeal cavity." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "stomodeal-hypophyseal primordium" }, { "pred" : "hasExactSynonym", "val" : "mouth primordium" }, { "pred" : "hasExactSynonym", "val" : "primitive oral cavity" }, { "pred" : "hasExactSynonym", "val" : "stomatodeum" }, { "pred" : "hasExactSynonym", "val" : "stomodaeum" }, { "pred" : "hasRelatedSynonym", "val" : "mouth pit" }, { "pred" : "hasRelatedSynonym", "val" : "oral ectoderm" }, { "pred" : "hasRelatedSynonym", "val" : "oral pit" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000948", "lbl" : "heart", "type" : "CLASS", "meta" : { "definition" : { "val" : "A myogenic muscular circulatory organ found in the vertebrate cardiovascular system composed of chambers of cardiac muscle. It is the primary circulatory organ." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chambered heart" }, { "pred" : "hasExactSynonym", "val" : "vertebrate heart" }, { "pred" : "hasNarrowSynonym", "val" : "branchial heart" }, { "pred" : "hasRelatedSynonym", "val" : "cardium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000955", "lbl" : "brain", "type" : "CLASS", "meta" : { "definition" : { "val" : "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "encephalon" }, { "pred" : "hasRelatedSynonym", "val" : "suprasegmental levels of nervous system" }, { "pred" : "hasRelatedSynonym", "val" : "suprasegmental structures" }, { "pred" : "hasRelatedSynonym", "val" : "synganglion" }, { "pred" : "hasRelatedSynonym", "val" : "the brain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000965", "lbl" : "lens of camera-type eye", "type" : "CLASS", "meta" : { "definition" : { "val" : "Transparent part of camera-type eye that helps to refract light to be focused on the retina." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "camera-type eye lens" }, { "pred" : "hasExactSynonym", "val" : "eye lens" }, { "pred" : "hasExactSynonym", "val" : "lens" }, { "pred" : "hasExactSynonym", "val" : "lens crystallina" }, { "pred" : "hasRelatedSynonym", "val" : "crystalline lens" }, { "pred" : "hasRelatedSynonym", "val" : "lenses" }, { "pred" : "hasRelatedSynonym", "val" : "ocular lens" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000966", "lbl" : "retina", "type" : "CLASS", "meta" : { "definition" : { "val" : "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "inner layer of eyeball" }, { "pred" : "hasExactSynonym", "val" : "retina of camera-type eye" }, { "pred" : "hasExactSynonym", "val" : "tunica interna of eyeball" }, { "pred" : "hasRelatedSynonym", "val" : "Netzhaut" }, { "pred" : "hasRelatedSynonym", "val" : "retinas" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000970", "lbl" : "eye", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ that detects light." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "light-detecting organ" }, { "pred" : "hasRelatedSynonym", "val" : "visual apparatus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000982", "lbl" : "skeletal joint", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "articulation" }, { "pred" : "hasBroadSynonym", "val" : "joint" }, { "pred" : "hasRelatedSynonym", "val" : "articular joint" }, { "pred" : "hasRelatedSynonym", "val" : "joints" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000990", "lbl" : "reproductive system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that has as its parts the organs concerned with reproduction." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "genital system" }, { "pred" : "hasNarrowSynonym", "val" : "genitalia" }, { "pred" : "hasRelatedSynonym", "val" : "Geschlechtsorgan" }, { "pred" : "hasRelatedSynonym", "val" : "animal reproductive system" }, { "pred" : "hasRelatedSynonym", "val" : "genital tract" }, { "pred" : "hasRelatedSynonym", "val" : "organa genitalia" }, { "pred" : "hasRelatedSynonym", "val" : "reproductive tissue" }, { "pred" : "hasRelatedSynonym", "val" : "reproductive tract" }, { "pred" : "hasRelatedSynonym", "val" : "systemata genitalia" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0000991", "lbl" : "gonad", "type" : "CLASS", "meta" : { "definition" : { "val" : "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gonada" }, { "pred" : "hasRelatedSynonym", "val" : "gonads" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001003", "lbl" : "skin epidermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "The outer epithelial layer of the skin that is superficial to the dermis." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "epidermis" }, { "pred" : "hasBroadSynonym", "val" : "skin" }, { "pred" : "hasExactSynonym", "val" : "vertebrate epidermis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001004", "lbl" : "respiratory system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Functional system which consists of structures involved in respiration." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "respiratory system" }, { "pred" : "hasRelatedSynonym", "val" : "Atmungssystem" }, { "pred" : "hasRelatedSynonym", "val" : "apparatus respiratorius" }, { "pred" : "hasRelatedSynonym", "val" : "systema respiratorium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001007", "lbl" : "digestive system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "alimentary system" }, { "pred" : "hasRelatedSynonym", "val" : "alimentary tract" }, { "pred" : "hasRelatedSynonym", "val" : "gastrointestinal system" }, { "pred" : "hasRelatedSynonym", "val" : "gut" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001008", "lbl" : "renal system", "type" : "CLASS", "meta" : { "definition" : { "val" : "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "excretory system" }, { "pred" : "hasExactSynonym", "val" : "systema urinaria" }, { "pred" : "hasExactSynonym", "val" : "systema urinarium" }, { "pred" : "hasExactSynonym", "val" : "urinary system" }, { "pred" : "hasExactSynonym", "val" : "urinary tract" }, { "pred" : "hasRelatedSynonym", "val" : "renal or urinary system" }, { "pred" : "hasRelatedSynonym", "val" : "renal/urinary system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001009", "lbl" : "circulatory system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "systema cardiovasculare" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001013", "lbl" : "adipose tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of connective tissue composed of adipocytes enmeshed in areolar tissue." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fat" }, { "pred" : "hasExactSynonym", "val" : "fat tissue" }, { "pred" : "hasExactSynonym", "val" : "fatty tissue" }, { "pred" : "hasRelatedSynonym", "val" : "adipose" }, { "pred" : "hasRelatedSynonym", "val" : "bodyfat" }, { "pred" : "hasRelatedSynonym", "val" : "fatty depot" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001015", "lbl" : "musculature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of the muscular system corresponding to a subdisivision of an organism." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscle group" }, { "pred" : "hasExactSynonym", "val" : "muscles set" }, { "pred" : "hasExactSynonym", "val" : "musculature" }, { "pred" : "hasExactSynonym", "val" : "musculi" }, { "pred" : "hasExactSynonym", "val" : "set of muscles" }, { "pred" : "hasExactSynonym", "val" : "set of skeletal muscles" }, { "pred" : "hasRelatedSynonym", "val" : "muscle system" }, { "pred" : "hasRelatedSynonym", "val" : "muscles" }, { "pred" : "hasRelatedSynonym", "val" : "musculature system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001016", "lbl" : "nervous system", "type" : "CLASS", "meta" : { "definition" : { "val" : "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neurological system" }, { "pred" : "hasNarrowSynonym", "val" : "nerve net" }, { "pred" : "hasRelatedSynonym", "val" : "systema nervosum" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001017", "lbl" : "central nervous system", "type" : "CLASS", "meta" : { "definition" : { "val" : "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CNS" }, { "pred" : "hasExactSynonym", "val" : "systema nervosum centrale" }, { "pred" : "hasNarrowSynonym", "val" : "cerebrospinal axis" }, { "pred" : "hasRelatedSynonym", "val" : "neuraxis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001021", "lbl" : "nerve", "type" : "CLASS", "meta" : { "definition" : { "val" : "An enclosed, cable-like bundle of axons in the peripheral nervous system originating in a nerve root in the central nervous system (or a condensed nervous structure) connecting with peripheral structures." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nerves" }, { "pred" : "hasExactSynonym", "val" : "peripheral nerve" }, { "pred" : "hasRelatedSynonym", "val" : "neural subtree" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001032", "lbl" : "sensory system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "organa sensuum" }, { "pred" : "hasExactSynonym", "val" : "sense organ subsystem" }, { "pred" : "hasExactSynonym", "val" : "sense organs" }, { "pred" : "hasExactSynonym", "val" : "sense organs set" }, { "pred" : "hasExactSynonym", "val" : "sensory subsystem" }, { "pred" : "hasExactSynonym", "val" : "sensory systems" }, { "pred" : "hasRelatedSynonym", "val" : "organa sensuum" }, { "pred" : "hasRelatedSynonym", "val" : "sensory organ system" }, { "pred" : "hasRelatedSynonym", "val" : "set of sense organs" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001041", "lbl" : "foregut", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anterior subdivision of a digestive tract." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "praeenteron" }, { "pred" : "hasRelatedSynonym", "val" : "proenteron" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001046", "lbl" : "hindgut", "type" : "CLASS", "meta" : { "definition" : { "val" : "The caudalmost subdivision of a digestive tract." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "metenteron" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001048", "lbl" : "primordium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt, Hartenstein, V. (2004)]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "bud" }, { "pred" : "hasRelatedSynonym", "val" : "future organ" }, { "pred" : "hasRelatedSynonym", "val" : "placode" }, { "pred" : "hasRelatedSynonym", "val" : "primordia" }, { "pred" : "hasRelatedSynonym", "val" : "rudiment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001049", "lbl" : "neural tube", "type" : "CLASS", "meta" : { "definition" : { "val" : "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "neural primordium" }, { "pred" : "hasRelatedSynonym", "val" : "presumptive central nervous system" }, { "pred" : "hasRelatedSynonym", "val" : "tubus neuralis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001062", "lbl" : "anatomical entity", "type" : "CLASS", "meta" : { "definition" : { "val" : "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001084", "lbl" : "skin of head", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone of skin that is part of a head [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult head zone of skin" }, { "pred" : "hasExactSynonym", "val" : "head skin" }, { "pred" : "hasExactSynonym", "val" : "head zone of skin" }, { "pred" : "hasExactSynonym", "val" : "zone of skin of adult head" }, { "pred" : "hasExactSynonym", "val" : "zone of skin of head" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001085", "lbl" : "skin of trunk", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone of skin that is part of a trunk [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "torso zone of skin" }, { "pred" : "hasExactSynonym", "val" : "trunk skin" }, { "pred" : "hasExactSynonym", "val" : "trunk zone of skin" }, { "pred" : "hasExactSynonym", "val" : "zone of skin of torso" }, { "pred" : "hasExactSynonym", "val" : "zone of skin of trunk" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001087", "lbl" : "pleural fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "Transudate contained in the pleural cavity." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001088", "lbl" : "urine", "type" : "CLASS", "meta" : { "definition" : { "val" : "Excretion that is the output of a kidney." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001089", "lbl" : "sweat", "type" : "CLASS", "meta" : { "definition" : { "val" : "Secretion produced by a sweat gland." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "skin exudate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001090", "lbl" : "synovial fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "Joint fluid is a transudate of plasma that is actively secreted by synovial cells." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "joint fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001135", "lbl" : "smooth muscle tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Muscle tissue which is unstriated, composed primarily of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle" }, { "pred" : "hasExactSynonym", "val" : "textus muscularis nonstriatus" }, { "pred" : "hasNarrowSynonym", "val" : "visceral muscle" }, { "pred" : "hasNarrowSynonym", "val" : "visceral muscle tissue" }, { "pred" : "hasRelatedSynonym", "val" : "textus muscularis levis; textus muscularis nonstriatus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001242", "lbl" : "intestinal mucosa", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mucosal layer that lines the intestine." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bowel mucosa" }, { "pred" : "hasExactSynonym", "val" : "bowel mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "bowel mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "bowel organ mucosa" }, { "pred" : "hasExactSynonym", "val" : "intestine mucosa" }, { "pred" : "hasExactSynonym", "val" : "intestine mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "intestine mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "intestine organ mucosa" }, { "pred" : "hasExactSynonym", "val" : "mucosa of bowel" }, { "pred" : "hasExactSynonym", "val" : "mucosa of intestine" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of bowel" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of intestine" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of bowel" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of intestine" }, { "pred" : "hasExactSynonym", "val" : "organ mucosa of bowel" }, { "pred" : "hasExactSynonym", "val" : "organ mucosa of intestine" }, { "pred" : "hasExactSynonym", "val" : "tunica mucosa intestini" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001262", "lbl" : "wall of intestine", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical wall that is part of a intestine [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anatomical wall of bowel" }, { "pred" : "hasExactSynonym", "val" : "anatomical wall of intestine" }, { "pred" : "hasExactSynonym", "val" : "bowel anatomical wall" }, { "pred" : "hasExactSynonym", "val" : "bowel wall" }, { "pred" : "hasExactSynonym", "val" : "intestinal wall" }, { "pred" : "hasExactSynonym", "val" : "intestine anatomical wall" }, { "pred" : "hasExactSynonym", "val" : "intestine wall" }, { "pred" : "hasExactSynonym", "val" : "wall of bowel" }, { "pred" : "hasRelatedSynonym", "val" : "bowel wall" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001277", "lbl" : "intestinal epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelial layer that lines the intestine." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bowel epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "bowel epithelium" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of bowel" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of intestine" }, { "pred" : "hasExactSynonym", "val" : "epithelium of bowel" }, { "pred" : "hasExactSynonym", "val" : "epithelium of intestine" }, { "pred" : "hasExactSynonym", "val" : "intestine epithelial tissue" }, { "pred" : "hasNarrowSynonym", "val" : "villous epithelium" }, { "pred" : "hasRelatedSynonym", "val" : "intestine epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001353", "lbl" : "anal region", "type" : "CLASS", "meta" : { "definition" : { "val" : "The anus and surrounding regions. Encompasses both internal and external regions, where present." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "posterior" }, { "pred" : "hasRelatedSynonym", "val" : "posterior end of organism" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001359", "lbl" : "cerebrospinal fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CSF" }, { "pred" : "hasExactSynonym", "val" : "cerebral spinal fluid" }, { "pred" : "hasRelatedSynonym", "val" : "liquor cerebrospinalis" }, { "pred" : "hasRelatedSynonym", "val" : "spinal fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001418", "lbl" : "skin of thorax", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone of skin that is part of a thorax [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "thoracic skin" }, { "pred" : "hasExactSynonym", "val" : "thorax skin" }, { "pred" : "hasExactSynonym", "val" : "thorax zone of skin" }, { "pred" : "hasExactSynonym", "val" : "zone of skin of thorax" }, { "pred" : "hasRelatedSynonym", "val" : "upper body skin" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001421", "lbl" : "pectoral girdle region", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organism subdivision that includes the pectoral girdle skeleton and associated soft tissue. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: There are only two instances in an organism, right and left pectoral girdle regions." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cingulum membri superioris" }, { "pred" : "hasExactSynonym", "val" : "girdle - pectoral" }, { "pred" : "hasNarrowSynonym", "val" : "cingulum membri superioris" }, { "pred" : "hasNarrowSynonym", "val" : "shoulder girdle" }, { "pred" : "hasNarrowSynonym", "val" : "upper limb girdle" }, { "pred" : "hasRelatedSynonym", "val" : "pectoral girdle" }, { "pred" : "hasRelatedSynonym", "val" : "pectoral region" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001422", "lbl" : "facial lymphatic vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lymphatic vessel that is part of a face [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "buccal lymphatic vessel" }, { "pred" : "hasExactSynonym", "val" : "face lymph vessel" }, { "pred" : "hasExactSynonym", "val" : "face lymphatic vessel" }, { "pred" : "hasExactSynonym", "val" : "lymph vessel of face" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vessel of face" }, { "pred" : "hasRelatedSynonym", "val" : "FL" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001425", "lbl" : "pectoral lymphatic vessel", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "PL" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001434", "lbl" : "skeletal system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "skeleton system" }, { "pred" : "hasNarrowSynonym", "val" : "set of all bones and joints" }, { "pred" : "hasRelatedSynonym", "val" : "Skelettsystem" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001444", "lbl" : "subdivision of head", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "head subdivision" }, { "pred" : "hasRelatedSynonym", "val" : "head region" }, { "pred" : "hasRelatedSynonym", "val" : "region of head" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001456", "lbl" : "face", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of the head that has as parts the layers deep to the surface of the anterior surface, including the mouth, eyes, and nose (when present). In vertebrates, this includes the facial skeleton and structures superficial to the facial skeleton (cheeks, mouth, eyeballs, skin of face, etc)." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "facia/facies" }, { "pred" : "hasRelatedSynonym", "val" : "visage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001473", "lbl" : "lymphatic vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lymph vessel" }, { "pred" : "hasRelatedSynonym", "val" : "vas lymphaticum" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001474", "lbl" : "bone element", "type" : "CLASS", "meta" : { "definition" : { "val" : "Skeletal element that is composed of bone tissue." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bone organ" }, { "pred" : "hasRelatedSynonym", "val" : "bone" }, { "pred" : "hasRelatedSynonym", "val" : "bones" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001555", "lbl" : "digestive tract", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tube extending from the mouth to the anus." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "gut" }, { "pred" : "hasExactSynonym", "val" : "digestive tube" }, { "pred" : "hasExactSynonym", "val" : "enteric tract" }, { "pred" : "hasNarrowSynonym", "val" : "alimentary canal" }, { "pred" : "hasNarrowSynonym", "val" : "alimentary tract" }, { "pred" : "hasRelatedSynonym", "val" : "digestive canal" }, { "pred" : "hasRelatedSynonym", "val" : "gut tube" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001605", "lbl" : "ciliary muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "The ciliary muscle is a ring of smooth muscle in the middle layer of the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "musculus ciliarus" }, { "pred" : "hasRelatedSynonym", "val" : "Bowman`s muscles" }, { "pred" : "hasRelatedSynonym", "val" : "ciliaris" }, { "pred" : "hasRelatedSynonym", "val" : "musculus ciliaris" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001606", "lbl" : "muscle of iris", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "iris muscle" }, { "pred" : "hasExactSynonym", "val" : "iris muscle organ" }, { "pred" : "hasExactSynonym", "val" : "muscle organ of iris" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001630", "lbl" : "muscle organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "muscle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001708", "lbl" : "jaw skeleton", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of skeleton which includes upper and lower jaw skeletons." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "jaw" }, { "pred" : "hasExactSynonym", "val" : "jaw cartilage" }, { "pred" : "hasExactSynonym", "val" : "mandibular arch skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "anterior splanchnocranium" }, { "pred" : "hasRelatedSynonym", "val" : "jaws" }, { "pred" : "hasRelatedSynonym", "val" : "mandibular arch" }, { "pred" : "hasRelatedSynonym", "val" : "oral jaw skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "pharyngeal arch 1 skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "visceral arch 1" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001710", "lbl" : "lower jaw region", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mandibular part of mouth" }, { "pred" : "hasRelatedSynonym", "val" : "lower part of mouth" }, { "pred" : "hasRelatedSynonym", "val" : "mandibular series" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001766", "lbl" : "anterior chamber of eyeball", "type" : "CLASS", "meta" : { "definition" : { "val" : "The space in the eye, filled with aqueous humor, and bounded anteriorly by the cornea and a small portion of the sclera and posteriorly by a small portion of the ciliary body, the iris, and part of the crystalline lens." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anterior chamber" }, { "pred" : "hasExactSynonym", "val" : "anterior chamber of eye" }, { "pred" : "hasExactSynonym", "val" : "camera anterior" }, { "pred" : "hasExactSynonym", "val" : "eye anterior chamber" }, { "pred" : "hasRelatedSynonym", "val" : "camera anterior bulbi" }, { "pred" : "hasRelatedSynonym", "val" : "camera anterior bulbi oculi" }, { "pred" : "hasRelatedSynonym", "val" : "camera oculi anterior" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001768", "lbl" : "uvea", "type" : "CLASS", "meta" : { "definition" : { "val" : "The pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tunica vasculosa of eyeball" }, { "pred" : "hasExactSynonym", "val" : "uvea" }, { "pred" : "hasExactSynonym", "val" : "uveal tract" }, { "pred" : "hasRelatedSynonym", "val" : "pars iridica retinae" }, { "pred" : "hasRelatedSynonym", "val" : "tunica vasculatis oculi" }, { "pred" : "hasRelatedSynonym", "val" : "tunica vasculosa bulbi" }, { "pred" : "hasRelatedSynonym", "val" : "vascular layer of eyeball" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001769", "lbl" : "iris", "type" : "CLASS", "meta" : { "definition" : { "val" : "The adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "anterior uvea" }, { "pred" : "hasRelatedSynonym", "val" : "irides" }, { "pred" : "hasRelatedSynonym", "val" : "irises" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001775", "lbl" : "ciliary body", "type" : "CLASS", "meta" : { "definition" : { "val" : "The thickened portion of the vascular tunic, which lies between the choroid and the iris, composed of ciliary muscle and ciliary processes." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ocular ciliary body" }, { "pred" : "hasRelatedSynonym", "val" : "anterior uvea" }, { "pred" : "hasRelatedSynonym", "val" : "ciliary bodies" }, { "pred" : "hasRelatedSynonym", "val" : "corpus ciliare" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001776", "lbl" : "optic choroid", "type" : "CLASS", "meta" : { "definition" : { "val" : "Vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "choroid" }, { "pred" : "hasExactSynonym", "val" : "choroid coat" }, { "pred" : "hasExactSynonym", "val" : "choroidea" }, { "pred" : "hasExactSynonym", "val" : "eye choroid" }, { "pred" : "hasExactSynonym", "val" : "posterior uvea" }, { "pred" : "hasRelatedSynonym", "val" : "chorioid" }, { "pred" : "hasRelatedSynonym", "val" : "choroidea" }, { "pred" : "hasRelatedSynonym", "val" : "optic choroid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001778", "lbl" : "ciliary epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "A double layer covering the ciliary body that produces aqueous humor." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ciliary body epithelium" }, { "pred" : "hasExactSynonym", "val" : "epithelium of ciliary body" }, { "pred" : "hasExactSynonym", "val" : "ocular ciliary epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001796", "lbl" : "aqueous humor of eyeball", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thick watery refractive medium that fills the space between the lens and the cornea[WP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "aqueous humor" }, { "pred" : "hasExactSynonym", "val" : "aqueous humour" }, { "pred" : "hasExactSynonym", "val" : "humor aquosus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001797", "lbl" : "vitreous humor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "portion of vitreous humor" }, { "pred" : "hasExactSynonym", "val" : "humor vitreous" }, { "pred" : "hasExactSynonym", "val" : "humor vitreus" }, { "pred" : "hasExactSynonym", "val" : "vitreous" }, { "pred" : "hasExactSynonym", "val" : "whole portion of vitreous humor" }, { "pred" : "hasRelatedSynonym", "val" : "humoral fluid" }, { "pred" : "hasRelatedSynonym", "val" : "ocular fluid" }, { "pred" : "hasRelatedSynonym", "val" : "vitreous fluid" }, { "pred" : "hasRelatedSynonym", "val" : "vitreous humour" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001798", "lbl" : "vitreous body", "type" : "CLASS", "meta" : { "definition" : { "val" : "Gelatinous mucoid tissue that is composed of vitreous humor and fills the cavity behind the crystalline lens of the eye and in front of the retina[MP,modified]." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001799", "lbl" : "vitreous chamber of eyeball", "type" : "CLASS", "meta" : { "definition" : { "val" : "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "camera postrema" }, { "pred" : "hasExactSynonym", "val" : "camera postrema bulbi oculi" }, { "pred" : "hasExactSynonym", "val" : "camera vitrea" }, { "pred" : "hasExactSynonym", "val" : "camera vitrea bulbi" }, { "pred" : "hasExactSynonym", "val" : "postremal chamber" }, { "pred" : "hasExactSynonym", "val" : "postremal chamber of eyeball" }, { "pred" : "hasExactSynonym", "val" : "vitreous chamber" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001801", "lbl" : "anterior segment of eyeball", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any of the parts of the eye that lie in front of, or ventral to, the lens (inclusive)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anterior eye segment" }, { "pred" : "hasExactSynonym", "val" : "anterior segment eye" }, { "pred" : "hasExactSynonym", "val" : "anterior segment of eye" }, { "pred" : "hasExactSynonym", "val" : "anterior segment of the eye" }, { "pred" : "hasExactSynonym", "val" : "eye anterior segment" }, { "pred" : "hasExactSynonym", 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consists of the muscular and skeletal systems." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "musculo-skeletal system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002217", "lbl" : "synovial joint", "type" : "CLASS", "meta" : { "definition" : { "val" : "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "articulatio synoviale" }, { "pred" : "hasExactSynonym", "val" : "diarthroses" }, { "pred" : "hasExactSynonym", "val" : "diarthrosis" }, { "pred" : "hasExactSynonym", "val" : "diarthrosis joint" }, { "pred" : "hasRelatedSynonym", "val" : "diarthrodial joints" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002271", "lbl" : "periventricular zone of hypothalamus", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hypothalamus periventricular zone" }, { "pred" : "hasExactSynonym", "val" : "zona periventricularis hypothalamicae" }, { "pred" : "hasRelatedSynonym", "val" : "periventricular zone of the hypothalamus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002285", "lbl" : "telencephalic ventricle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A brain ventricle that is part of a telencephalon. In mammals and species with an evaginated telencephalon, this is one of a pair of lateral structures, one in each hemisphere." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricles" }, { "pred" : "hasExactSynonym", "val" : "telencephalic ventricle" }, { "pred" : "hasExactSynonym", "val" : "telencephalon lateral ventricle" }, { "pred" : "hasRelatedSynonym", "val" : "forebrain ventricle" }, { "pred" : "hasRelatedSynonym", "val" : "lateral ventricle of brain" }, { "pred" : "hasRelatedSynonym", "val" : "tectal ventricle" }, { "pred" : "hasRelatedSynonym", "val" : "telencephalic ventricles" }, { "pred" : "hasRelatedSynonym", "val" : "telencephalic vesicle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002297", "lbl" : "cerumen", "type" : "CLASS", "meta" : { "definition" : { "val" : "The yellow or brown waxy secretions produced by vestigial apocrine sweat glands in the external ear canal[MESH]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ear wax" }, { "pred" : "hasExactSynonym", "val" : "earwax" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002307", "lbl" : "choroid plexus of lateral ventricle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Part of choroid plexus contained in the lateral ventricle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chorioid plexus of cerebral hemisphere of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "chorioid plexus of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "choroid plexus telencephalic ventricle" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle chorioid plexus of cerebral hemisphere" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle choroid plexus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002308", "lbl" : "nucleus of brain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neural nucleus that is part of the brain." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brain nucleus" }, { "pred" : "hasRelatedSynonym", "val" : "brain nuclei" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002329", "lbl" : "somite", "type" : "CLASS", "meta" : { "definition" : { "val" : "Somites are spheres of epithelial cells that form sequentially along the anterior-posterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "mesodermal cluster" }, { "pred" : "hasRelatedSynonym", "val" : "epimere" }, { "pred" : "hasRelatedSynonym", "val" : "epimere mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "epithelial somite" }, { "pred" : "hasRelatedSynonym", "val" : "somites" }, { "pred" : "hasRelatedSynonym", "val" : "somitic mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "somitus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002342", "lbl" : "neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A specialized region of ectoderm found between the neural ectoderm (neural plate) and non-neural ectoderm and composed of highly migratory pluripotent cells that delaminate in early embryonic development from the dorsal neural tube and give rise to an astounding variety of differentiated cell types[MP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "NC" }, { "pred" : "hasRelatedSynonym", "val" : "crista neuralis" }, { "pred" : "hasRelatedSynonym", "val" : "neural crest material" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002346", "lbl" : "neurectoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Embryonic ectoderm that gives rise to nervous tissue." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neural ectoderm" }, { "pred" : "hasExactSynonym", "val" : "neuroectoderm" }, { "pred" : "hasRelatedSynonym", "val" : "epithelium tubi neuralis; neuroectoderma" }, { "pred" : "hasRelatedSynonym", "val" : "neuaral ectoderm" }, { "pred" : "hasRelatedSynonym", "val" : "presumptive central nervous system" }, { "pred" : "hasRelatedSynonym", "val" : "ventral neurogenic region" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002384", "lbl" : "connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus" }, { "pred" : "hasRelatedSynonym", "val" : "Bindegewebe" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002385", "lbl" : "muscle tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscular tissue" }, { "pred" : "hasExactSynonym", "val" : "portion of muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "textus muscularis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002390", "lbl" : "hematopoietic system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that is involved in the production of hematopoietic cells." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "haematological system" }, { "pred" : "hasExactSynonym", "val" : "haemopoietic system" }, { "pred" : "hasExactSynonym", "val" : "organa haemopoietica" }, { "pred" : "hasRelatedSynonym", "val" : "Blutbildungssystem" }, { "pred" : "hasRelatedSynonym", "val" : "haematopoietic system" }, { "pred" : "hasRelatedSynonym", "val" : "hematological system" }, { "pred" : "hasRelatedSynonym", "val" : "hematolymphoid system" }, { "pred" : "hasRelatedSynonym", "val" : "hemopoietic system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002391", "lbl" : "lymph", "type" : "CLASS", "meta" : { "definition" : { "val" : "Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system through lymph capillaries[WP]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lympha" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002405", "lbl" : "immune system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002416", "lbl" : "integumental system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "integumentary system" }, { "pred" : "hasRelatedSynonym", "val" : "body surface" }, { "pred" : "hasRelatedSynonym", "val" : "dermal system" }, { "pred" : "hasRelatedSynonym", "val" : "external covering of organism" }, { "pred" : "hasRelatedSynonym", "val" : "integumentum commune" }, { "pred" : "hasRelatedSynonym", "val" : "organism surface" }, { "pred" : "hasRelatedSynonym", "val" : "surface" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002424", "lbl" : "oral epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of the mouth and lines the oral cavity, typically stratified squamous, and may be para-, ortho- or non- keratinized. Primary barrier between oral environment and deeper tissues." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelium of mucosa of mouth" }, { "pred" : "hasExactSynonym", "val" : "epithelium of oral mucosa" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002443", "lbl" : "choroidal blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a choroid [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vessel of choroid" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of choroid coat" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of choroidea" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of posterior uvea" }, { "pred" : "hasExactSynonym", "val" : "choroid blood vessel" }, { "pred" : "hasExactSynonym", "val" : "choroid blood vessels" }, { "pred" : "hasExactSynonym", "val" : "choroid blood vessels set" }, { "pred" : "hasExactSynonym", "val" : "choroid coat blood vessel" }, { "pred" : "hasExactSynonym", "val" : "choroidea blood vessel" }, { "pred" : "hasExactSynonym", "val" : "posterior uvea blood vessel" }, { "pred" : "hasExactSynonym", "val" : "vasa sanguinea choroideae" }, { "pred" : "hasRelatedSynonym", "val" : "set of choroid blood vessels" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002465", "lbl" : "lymphoid system", "type" : "CLASS", "meta" : { "definition" : { "val" : "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system[WP]." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "lymphatic system" }, { "pred" : "hasRelatedSynonym", "val" : "lymphatic circulatory system" }, { "pred" : "hasRelatedSynonym", "val" : "lymphatic drainage system" }, { "pred" : "hasRelatedSynonym", "val" : "systema lymphoideum" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002481", "lbl" : "bone tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "calcium tissue" }, { "pred" : "hasExactSynonym", "val" : "osseous tissue" }, { "pred" : "hasExactSynonym", "val" : "osteogenic tissue" }, { "pred" : "hasNarrowSynonym", "val" : "mineralized bone tissue" }, { "pred" : "hasRelatedSynonym", "val" : "bone" }, { "pred" : "hasRelatedSynonym", "val" : "portion of bone tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002506", "lbl" : "iris epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a iris [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelial tissue of iris" }, { "pred" : "hasExactSynonym", "val" : "epithelium of iris" }, { "pred" : "hasExactSynonym", "val" : "epithelium pigmentosum (iris)" }, { "pred" : "hasExactSynonym", "val" : "epithelium pigmentosum iridis" }, { "pred" : "hasExactSynonym", "val" : "iris epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "iris epithelium" }, { "pred" : "hasExactSynonym", "val" : "pigmented epithelium of iris" }, { "pred" : "hasRelatedSynonym", "val" : "iris pigmented epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002532", "lbl" : "epiblast (generic)", "type" : "CLASS", "meta" : { "definition" : { "val" : "In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epiblast" }, { "pred" : "hasRelatedSynonym", "val" : "blastocyst" }, { "pred" : "hasRelatedSynonym", "val" : "ectoblast" }, { "pred" : "hasRelatedSynonym", "val" : "epiblastus" }, { "pred" : "hasRelatedSynonym", "val" : "primitive ectoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002535", "lbl" : "gill", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002539", "lbl" : "pharyngeal arch", "type" : "CLASS", "meta" : { "definition" : { "val" : "One of a series of paired bulges that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pharyngeal arches" }, { "pred" : "hasNarrowSynonym", "val" : "branchial arch" }, { "pred" : "hasRelatedSynonym", "val" : "arcus pharyngei" }, { "pred" : "hasRelatedSynonym", "val" : "visceral arch" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002546", "lbl" : "cranial placode", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ectodermal placode" }, { "pred" : "hasBroadSynonym", "val" : "placode" }, { "pred" : "hasExactSynonym", "val" : "ectodermal cranial placode" }, { "pred" : "hasRelatedSynonym", "val" : "cranial placodes" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002553", "lbl" : "anatomical cavity", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cavity" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0002616", "lbl" : "regional part of brain", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical divisons of the brain according to one or more criteria, e.g. cytoarchitectural, gross anatomy. Parts may be contiguous in 3D or not, e.g., basal ganglia." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anatomical structure of brain" }, { "pred" : "hasExactSynonym", "val" : "biological structure of brain" }, { "pred" : "hasExactSynonym", "val" : "brain anatomical structure" }, { "pred" : "hasExactSynonym", "val" : "brain biological structure" }, { "pred" : "hasExactSynonym", "val" : "brain part" }, { "pred" : "hasExactSynonym", "val" : "neuraxis segment" }, { "pred" : "hasExactSynonym", "val" : "neuroanatomical region" }, { "pred" : "hasExactSynonym", "val" : "segment of brain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003037", "lbl" : "septum", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wall, dividing a cavity or structure into smaller ones[WP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "septa" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003056", "lbl" : "pre-chordal neural plate", "type" : "CLASS", "meta" : { "definition" : { "val" : "The portion of neural plate anterior to the mid-hindbrain junction." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "anterior neural plate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003059", "lbl" : "presomitic mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "segmental plate" }, { "pred" : "hasExactSynonym", "val" : "unsegmented paraxial mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "PSM" }, { "pred" : "hasRelatedSynonym", "val" : "presumptive somite mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "somitogenic mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "somitomeric mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "unsegmented mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003061", "lbl" : "blood island", "type" : "CLASS", "meta" : { "definition" : { "val" : "Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP, unvetted]." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "ventral lateral plate mesoderm" }, { "pred" : "hasExactSynonym", "val" : "blood islands" }, { "pred" : "hasRelatedSynonym", "val" : "VBI" }, { "pred" : "hasRelatedSynonym", "val" : "caudal hematopoietic tissue" }, { "pred" : "hasRelatedSynonym", "val" : "posterior ICM" }, { "pred" : "hasRelatedSynonym", "val" : "posterior blood island" }, { "pred" : "hasRelatedSynonym", "val" : "ventral blood island" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003063", "lbl" : "prechordal plate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A horseshoe-shaped thickening of the endoderm at the cranial (rostral) end of the primitive streak formed by the involution of Spemann's organizer cells which, together with the notochord, induces the formation of the neural plate from the overlying ectodermal cells and contributes mesodermal type cells to the surrounding tissue." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "head mesenchyme" }, { "pred" : "hasBroadSynonym", "val" : "head mesoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003064", "lbl" : "intermediate mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "IM" }, { "pred" : "hasRelatedSynonym", "val" : "intermediate mesenchyme" }, { "pred" : "hasRelatedSynonym", "val" : "intermediate plate" }, { "pred" : "hasRelatedSynonym", "val" : "intermediate plate mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "mesenchyma intermedium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003068", "lbl" : "axial mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "chordamesoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003071", "lbl" : "eye primordium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "eye placode" }, { "pred" : "hasExactSynonym", "val" : "occular primordium" }, { "pred" : "hasExactSynonym", "val" : "ocular primordium" }, { "pred" : "hasExactSynonym", "val" : "optic placode" }, { "pred" : "hasExactSynonym", "val" : "optic placode of camera-type eye" }, { "pred" : "hasExactSynonym", "val" : "optic primordium" }, { "pred" : "hasRelatedSynonym", "val" : "eye anlage" }, { "pred" : "hasRelatedSynonym", "val" : "eye field" }, { "pred" : "hasRelatedSynonym", "val" : "optic field" }, { "pred" : "hasRelatedSynonym", "val" : "optic placodes" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003072", "lbl" : "optic cup", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "eye cup" }, { "pred" : "hasRelatedSynonym", "val" : "eyecup" }, { "pred" : "hasRelatedSynonym", "val" : "ocular cup" }, { "pred" : "hasRelatedSynonym", "val" : "ophtalmic cup" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003073", "lbl" : "lens placode", "type" : "CLASS", "meta" : { "definition" : { "val" : "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lens placodes" }, { "pred" : "hasRelatedSynonym", "val" : "placoda lentis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003075", "lbl" : "neural plate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lamina neuralis" }, { "pred" : "hasRelatedSynonym", "val" : "presumptive central nervous system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003077", "lbl" : "paraxial mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "paraxial mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "somitic mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "mesoderma paraxiale" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003080", "lbl" : "anterior neural tube", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003081", "lbl" : "lateral plate mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "LPM" }, { "pred" : "hasExactSynonym", "val" : "lateral mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "lateral plate" }, { "pred" : "hasRelatedSynonym", "val" : "lateral plate mesenchyme" }, { "pred" : "hasRelatedSynonym", "val" : "mesoderma laminae lateralis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003084", "lbl" : "heart primordium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cardiac field" }, { "pred" : "hasRelatedSynonym", "val" : "fused heart primordium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003089", "lbl" : "sclerotome", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sclerotomes" }, { "pred" : "hasRelatedSynonym", "val" : "sclerotomus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003099", "lbl" : "cranial neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "Neural crest cells (NCCs) originating in the anterior part of the developing embryo and residing between the mid-diencephalon and the forming hindbrain; cranial NCCs migrate dorsolaterally to form the craniofacial mesenchyme that differentiates into various craniofacial cartilages and bones, cranial neurons, glia, and connective tissues of the face; these cells enter the pharyngeal pouches and arches where they give rise to thymic cells, bones of the middle ear and jaw (mandible), and the odontoblasts of the tooth primordia; like their counterparts in the trunk, cranial NCCs also contribute to the developing peripheral nervous system, along with the pigmented cell (i.e. melanocyte) lineage." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CNC" }, { "pred" : "hasExactSynonym", "val" : "cephalic neural crest" }, { "pred" : "hasExactSynonym", "val" : "cranial NCC population" }, { "pred" : "hasExactSynonym", "val" : "head NCC population" }, { "pred" : "hasRelatedSynonym", "val" : "crista neuralis cranialis" }, { "pred" : "hasRelatedSynonym", "val" : "head crest" }, { "pred" : "hasRelatedSynonym", "val" : "head neural crest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003102", "lbl" : "surface structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that overlaps the outer epithelial layer and is adjacent to the space surrounding the organism." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anatomical surface feature" }, { "pred" : "hasRelatedSynonym", "val" : "surface feature" }, { "pred" : "hasRelatedSynonym", "val" : "surface region" }, { "pred" : "hasRelatedSynonym", "val" : "surface structures" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003103", "lbl" : "compound organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003104", "lbl" : "mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of tissue composed of mesenchymal cells (motile cells that develop from epthelia via an epithelial to mesenchymal transition) and surrounding extracellular material. Mesenchyme has different embryological origins in different metazoan taxa - in many invertebrates it derives in whole or part from ectoderm. In vertebrates it derives largely from mesoderm, and sometimes the terms are used interchangeably, e.g. lateral plate mesoderm/mesenchyme." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchymal tissue" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme tissue" }, { "pred" : "hasExactSynonym", "val" : "portion of mesenchymal tissue" }, { "pred" : "hasExactSynonym", "val" : "portion of mesenchyme tissue" }, { "pred" : "hasRelatedSynonym", "val" : "mesenchyma" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003128", "lbl" : "cranium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Upper portion of the skull that excludes the mandible (when present in the organism)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bones of cranium" }, { "pred" : "hasExactSynonym", "val" : "ossa cranii" }, { "pred" : "hasExactSynonym", "val" : "set of bones of cranium" }, { "pred" : "hasExactSynonym", "val" : "skull minus mandible" }, { "pred" : "hasExactSynonym", "val" : "upper part of skull" }, { "pred" : "hasRelatedSynonym", "val" : "calvarium" }, { "pred" : "hasRelatedSynonym", "val" : "epicranial plate" }, { "pred" : "hasRelatedSynonym", "val" : "skeletal system of head" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003129", "lbl" : "skull", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cranial skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "skeletal system of head" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003133", "lbl" : "reproductive organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ involved in reproduction." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "genital organ" }, { "pred" : "hasExactSynonym", "val" : "reproductive system organ" }, { "pred" : "hasExactSynonym", "val" : "sex organ" }, { "pred" : "hasRelatedSynonym", "val" : "genitalia" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003219", "lbl" : "shell septum", "type" : "CLASS", "meta" : { "definition" : { "val" : "Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003236", "lbl" : "epithelium of lower jaw", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a lower jaw [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelial tissue of lower jaw" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of ventral mandibular arch" }, { "pred" : "hasExactSynonym", "val" : "epithelium of ventral mandibular arch" }, { "pred" : "hasExactSynonym", "val" : "lower jaw epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "lower jaw epithelium" }, { "pred" : "hasExactSynonym", "val" : "ventral mandibular arch epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "ventral mandibular arch epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003258", "lbl" : "endoderm of foregut", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endoderm that is part of a foregut [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "foregut endoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003260", "lbl" : "endoderm of hindgut", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endoderm that is part of a hindgut [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hindgut endoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003278", "lbl" : "skeleton of lower jaw", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of the skeleton that corresponds to the lower part of the mouth. The lower jaw skeleton includes the following elements, when present: lower jaw teeth, the mandible and other lower jaw bones, and Meckel's cartilage." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "lower jaw" }, { "pred" : "hasBroadSynonym", "val" : "mandible" }, { "pred" : "hasExactSynonym", "val" : "lower jaw skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "mandibles" }, { "pred" : "hasRelatedSynonym", "val" : "mandibular series" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003304", "lbl" : "mesoderm blood island", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood island that is part of a mesoderm." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesoderm blood islands" }, { "pred" : "hasRelatedSynonym", "val" : "mesenchyme blood island" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003314", "lbl" : "eye mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a developing camera-type eye." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchyme of eye" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003324", "lbl" : "mesenchyme of lower jaw", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a developing lower jaw [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lower jaw mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme of ventral mandibular arch" }, { "pred" : "hasExactSynonym", "val" : "ventral mandibular arch mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003343", "lbl" : "mucosa of oral region", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mucosa that is part of a oral opening [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mucosa of oral opening" }, { "pred" : "hasExactSynonym", "val" : "mucosa of oral part of face" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of oral opening" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of oral part of face" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of oral region" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of subdivision of mouth" }, { "pred" : "hasExactSynonym", "val" : "mucosa of subdivision of mouth" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of oral opening" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of oral part of face" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of oral region" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of subdivision of mouth" }, { "pred" : "hasExactSynonym", "val" : "oral opening mucosa" }, { "pred" : "hasExactSynonym", "val" : "oral opening mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "oral opening mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "oral opening organ mucosa" }, { "pred" : "hasExactSynonym", "val" : "oral part of face mucosa" }, { "pred" : "hasExactSynonym", "val" : "oral part of face mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "oral part of face mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "oral part of face organ mucosa" }, { "pred" : "hasExactSynonym", "val" : "oral region mucosa" }, { "pred" : "hasExactSynonym", "val" : "oral region mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "oral region mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "oral region organ mucosa" }, { "pred" : "hasExactSynonym", "val" : "organ mucosa of oral opening" }, { "pred" : "hasExactSynonym", "val" : "organ mucosa of oral part of face" }, { "pred" : "hasExactSynonym", "val" : "organ mucosa of oral region" }, { "pred" : "hasExactSynonym", "val" : "organ mucosa of subdivision of mouth" }, { "pred" : "hasExactSynonym", "val" : "subdivision of mouth mucosa" }, { "pred" : "hasExactSynonym", "val" : "subdivision of mouth mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "subdivision of mouth mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "subdivision of mouth organ mucosa" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003350", "lbl" : "epithelium of mucosa", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer of epithelial cells on the surface of the mucosa." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lamina epithelialis mucosa" }, { "pred" : "hasRelatedSynonym", "val" : "lamina epithelialis mucosae" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003353", "lbl" : "epithelium of hindgut", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a hindgut [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelial tissue of hindgut" }, { "pred" : "hasExactSynonym", "val" : "hindgut epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "hindgut epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003386", "lbl" : "smooth muscle of eye", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any of the striated muscles that move the eye and include: superior rectus, inferior rectus, medial rectus, lateral rectus, superior oblique, inferior oblique, retractor bulbi." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ocular smooth muscle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003426", "lbl" : "dermis adipose tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "An adipose tissue that is part of a dermis [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adipose tissue of dermis" }, { "pred" : "hasExactSynonym", "val" : "dermis fat tissue" }, { "pred" : "hasExactSynonym", "val" : "dermis fatty tissue" }, { "pred" : "hasExactSynonym", "val" : "fat tissue of dermis" }, { "pred" : "hasExactSynonym", "val" : "fatty tissue of dermis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003439", "lbl" : "nerve of trunk region", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nerve that is part of the trunk region of the body (not to be confused with a nerve trunk)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nerve of torso" }, { "pred" : "hasExactSynonym", "val" : "nerve of trunk" }, { "pred" : "hasExactSynonym", "val" : "torso nerve" }, { "pred" : "hasRelatedSynonym", "val" : "trunk nerve" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003456", "lbl" : "respiratory system lymphatic vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lymphatic vessel that is part of a respiratory system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius lymph vessel" }, { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius lymphatic vessel" }, { "pred" : "hasExactSynonym", "val" : "lymph vessel of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "lymph vessel of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vessel of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vessel of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "respiratory system lymph vessel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003457", "lbl" : "head bone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a head [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult head bone" }, { "pred" : "hasExactSynonym", "val" : "adult head bone organ" }, { "pred" : "hasExactSynonym", "val" : "bone of adult head" }, { "pred" : "hasExactSynonym", "val" : "bone of head" }, { "pred" : "hasExactSynonym", "val" : "bone organ of adult head" }, { "pred" : "hasExactSynonym", "val" : "bone organ of head" }, { "pred" : "hasExactSynonym", "val" : "head bone organ" }, { "pred" : "hasRelatedSynonym", "val" : "craniofacial bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003462", "lbl" : "facial bone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a facial skeleton [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bone of facial skeleton" }, { "pred" : "hasExactSynonym", "val" : "facial bone" }, { "pred" : "hasExactSynonym", "val" : "facial skeleton bone" }, { "pred" : "hasRelatedSynonym", "val" : "bone of viscerocranium" }, { "pred" : "hasRelatedSynonym", "val" : "viscerocranium bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003463", "lbl" : "trunk bone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a trunk [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bone of torso" }, { "pred" : "hasExactSynonym", "val" : "bone of trunk" }, { "pred" : "hasExactSynonym", "val" : "bone organ of torso" }, { "pred" : "hasExactSynonym", "val" : "bone organ of trunk" }, { "pred" : "hasExactSynonym", "val" : "torso bone" }, { "pred" : "hasExactSynonym", "val" : "torso bone organ" }, { "pred" : "hasExactSynonym", "val" : "trunk bone organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003496", "lbl" : "head blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a head [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult head blood vessel" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of adult head" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of head" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003498", "lbl" : "heart blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a heart [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vessel of heart" }, { "pred" : "hasRelatedSynonym", "val" : "cardiac blood vessel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003499", "lbl" : "brain blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a brain [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vessel of brain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003501", "lbl" : "retina blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a retina [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vessel of inner layer of eyeball" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of retina" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of tunica interna of eyeball" }, { "pred" : "hasExactSynonym", "val" : "inner layer of eyeball blood vessel" }, { "pred" : "hasExactSynonym", "val" : "retinal blood vessel" }, { "pred" : "hasExactSynonym", "val" : "tunica interna of eyeball blood vessel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003504", "lbl" : "respiratory system blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a respiratory system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius blood vessel" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of respiratory system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003511", "lbl" : "iris blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a iris [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vessel of iris" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003513", "lbl" : "trunk blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a trunk [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vessel of torso" }, { "pred" : "hasExactSynonym", "val" : "blood vessel of trunk" }, { "pred" : "hasExactSynonym", "val" : "torso blood vessel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003528", "lbl" : "brain gray matter", "type" : "CLASS", "meta" : { "definition" : { "val" : "A gray matter that is part of a brain [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brain grey matter" }, { "pred" : "hasExactSynonym", "val" : "brain grey substance" }, { "pred" : "hasExactSynonym", "val" : "gray matter of brain" }, { "pred" : "hasExactSynonym", "val" : "grey matter of brain" }, { "pred" : "hasExactSynonym", "val" : "grey substance of brain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003566", "lbl" : "head connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of connective tissue that is part of a head [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adult head connective tissue" }, { "pred" : "hasExactSynonym", "val" : "adult head portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "adult head textus connectivus" }, { "pred" : "hasExactSynonym", "val" : "connective tissue of adult head" }, { "pred" : "hasExactSynonym", "val" : "connective tissue of head" }, { "pred" : "hasExactSynonym", "val" : "head portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "head textus connectivus" }, { "pred" : "hasExactSynonym", "val" : "portion of connective tissue of adult head" }, { "pred" : "hasExactSynonym", "val" : "portion of connective tissue of head" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus of adult head" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus of head" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003570", "lbl" : "respiratory system connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of connective tissue that is part of a respiratory system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius connective tissue" }, { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius textus connectivus" }, { "pred" : "hasExactSynonym", "val" : "connective tissue of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "connective tissue of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "portion of connective tissue of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "portion of connective tissue of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "respiratory system portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "respiratory system textus connectivus" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus of respiratory system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003585", "lbl" : "dermis connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of connective tissue that is part of a dermis [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "connective tissue of dermis" }, { "pred" : "hasExactSynonym", "val" : "dermis portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "dermis textus connectivus" }, { "pred" : "hasExactSynonym", "val" : "portion of connective tissue of dermis" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus of dermis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003586", "lbl" : "trunk connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of connective tissue that is part of a trunk [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "connective tissue of torso" }, { "pred" : "hasExactSynonym", "val" : "connective tissue of trunk" }, { "pred" : "hasExactSynonym", "val" : "portion of connective tissue of torso" }, { "pred" : "hasExactSynonym", "val" : "portion of connective tissue of trunk" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus of torso" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus of trunk" }, { "pred" : "hasExactSynonym", "val" : "torso connective tissue" }, { "pred" : "hasExactSynonym", "val" : "torso portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "torso textus connectivus" }, { "pred" : "hasExactSynonym", "val" : "trunk portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "trunk textus connectivus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003714", "lbl" : "neural tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nerve tissue" }, { "pred" : "hasExactSynonym", "val" : "nervous tissue" }, { "pred" : "hasExactSynonym", "val" : "portion of neural tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003729", "lbl" : "mouth mucosa", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mucous membrane that lines the mouth." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mouth mucosa" }, { "pred" : "hasExactSynonym", "val" : "mouth mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "mouth organ mucosa" }, { "pred" : "hasExactSynonym", "val" : "mucosa of mouth" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of mouth" }, { "pred" : "hasExactSynonym", "val" : "oral mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "oral part of viscerocranial mucosa" }, { "pred" : "hasExactSynonym", "val" : "tunica mucosa oris" }, { "pred" : "hasRelatedSynonym", "val" : "buccal mucosa" }, { "pred" : "hasRelatedSynonym", "val" : "mucosal lining of mouth" }, { "pred" : "hasRelatedSynonym", "val" : "oral mucosa" }, { "pred" : "hasRelatedSynonym", "val" : "tunica mucosa oris" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003824", "lbl" : "nerve of thoracic segment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nerve that is part of a thorax [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nerve of thorax" }, { "pred" : "hasExactSynonym", "val" : "thoracic segment nerve" }, { "pred" : "hasExactSynonym", "val" : "thorax nerve" }, { "pred" : "hasRelatedSynonym", "val" : "upper body nerve" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003827", "lbl" : "thoracic segment bone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a thorax [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bone of thorax" }, { "pred" : "hasExactSynonym", "val" : "bone organ of thorax" }, { "pred" : "hasExactSynonym", "val" : "thorax bone" }, { "pred" : "hasExactSynonym", "val" : "thorax bone organ" }, { "pred" : "hasRelatedSynonym", "val" : "upper body bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003831", "lbl" : "respiratory system muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any muscle organ that is part of a respiratory system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius muscle organ" }, { "pred" : "hasExactSynonym", "val" : "muscle organ of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "muscle organ of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "respiratory system muscle organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003834", "lbl" : "thoracic segment blood vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel that is part of a thorax [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vessel of thorax" }, { "pred" : "hasExactSynonym", "val" : "thorax blood vessel" }, { "pred" : "hasRelatedSynonym", "val" : "upper body blood vessel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003837", "lbl" : "thoracic segment connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of connective tissue that is part of a thorax [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "connective tissue of thorax" }, { "pred" : "hasExactSynonym", "val" : "portion of connective tissue of thorax" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus of thorax" }, { "pred" : "hasExactSynonym", "val" : "thorax connective tissue" }, { "pred" : "hasExactSynonym", "val" : "thorax portion of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "thorax textus connectivus" }, { "pred" : "hasRelatedSynonym", "val" : "upper body connective tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003852", "lbl" : "rhombencephalon neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neural crest that has_potential_to_developmentally_contribute_to a hindbrain." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neural crest hindbrain" }, { "pred" : "hasExactSynonym", "val" : "rhombencephalic neural crest" }, { "pred" : "hasRelatedSynonym", "val" : "rhombomere neural crest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003855", "lbl" : "gonad mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a developing gonad [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gonada mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme of gonad" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme of gonada" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003911", "lbl" : "choroid plexus epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "The epithelial component of the choroid plexus. Consists of cuboidal epithelial cells surrounding a core of capillaries and loose connective tissue." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "choroid plexus epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of chorioid plexus of cerebral hemisphere" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of choroid plexus" }, { "pred" : "hasExactSynonym", "val" : "epithelium of choroid plexus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003914", "lbl" : "epithelial tube", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelial or endothelial tube" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003929", "lbl" : "digestive tract epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that lines the lumen of the digestive tract." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "digestive tract epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of digestive tract" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of gut" }, { "pred" : "hasExactSynonym", "val" : "epithelium of digestive tract" }, { "pred" : "hasExactSynonym", "val" : "epithelium of gut" }, { "pred" : "hasExactSynonym", "val" : "gastrodermis" }, { "pred" : "hasExactSynonym", "val" : "gut epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "gut epithelium" }, { "pred" : "hasRelatedSynonym", "val" : "alimentary tract epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0003947", "lbl" : "brain ventricle/choroid plexus", "type" : "CLASS", "meta" : { "definition" : { "val" : "The brain ventricles or their associated choroid plexuses." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004016", "lbl" : "dermatome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cutis plate" }, { "pred" : "hasExactSynonym", "val" : "dermatomal mesenchyme" }, { "pred" : "hasRelatedSynonym", "val" : "epimere mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "mesenchyma dermatomiale" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004086", "lbl" : "brain ventricle", "type" : "CLASS", "meta" : { "definition" : { "val" : "One of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brain ventricles" }, { "pred" : "hasExactSynonym", "val" : "cerebral ventricle" }, { "pred" : "hasExactSynonym", "val" : "region of ventricular system of brain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004088", "lbl" : "orbital region", "type" : "CLASS", "meta" : { "definition" : { "val" : "The subdivision of the face that includes the eye (eyeball plus adnexa such as eyelids) and the orbit of the skull and associated parts of the face such as the eyebrows, if present." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "content of orbital part of eye" }, { "pred" : "hasExactSynonym", "val" : "eye region" }, { "pred" : "hasExactSynonym", "val" : "orbital part of face" }, { "pred" : "hasRelatedSynonym", "val" : "ocular and peri-ocular region" }, { "pred" : "hasRelatedSynonym", "val" : "ocular region" }, { "pred" : "hasRelatedSynonym", "val" : "orbital content" }, { "pred" : "hasRelatedSynonym", "val" : "orbital part of eye" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004111", "lbl" : "anatomical conduit", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any tube, opening or passage that connects two distinct anatomical spaces." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "foramen" }, { "pred" : "hasNarrowSynonym", "val" : "foramina" }, { "pred" : "hasRelatedSynonym", "val" : "opening" }, { "pred" : "hasRelatedSynonym", "val" : "ostia" }, { "pred" : "hasRelatedSynonym", "val" : "ostium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004118", "lbl" : "vasculature of iris", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vasculature that is part of a iris [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "iris blood vessels" }, { "pred" : "hasExactSynonym", "val" : "iris vascular network" }, { "pred" : "hasExactSynonym", "val" : "iris vasculature" }, { "pred" : "hasExactSynonym", "val" : "vascular network of iris" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004119", "lbl" : "endoderm-derived structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that develops (entirely or partially) from the endoderm." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004120", "lbl" : "mesoderm-derived structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that develops (entirely or partially) from the mesoderm." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesodermal derivative" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004121", "lbl" : "ectoderm-derived structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that develops (entirely or partially) from the ectoderm." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ectodermal deriviative" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004122", "lbl" : "genitourinary system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "urogenital system" }, { "pred" : "hasRelatedSynonym", "val" : "GU tract" }, { "pred" : "hasRelatedSynonym", "val" : "UG tract" }, { "pred" : "hasRelatedSynonym", "val" : "Urogenitalsystem" }, { "pred" : "hasRelatedSynonym", "val" : "genito-urinary system" }, { "pred" : "hasRelatedSynonym", "val" : "genitourinary tract" }, { "pred" : "hasRelatedSynonym", "val" : "urogenital tract" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004128", "lbl" : "optic vesicle", "type" : "CLASS", "meta" : { "definition" : { "val" : "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "evagination" }, { "pred" : "hasRelatedSynonym", "val" : "eye vesicle" }, { "pred" : "hasRelatedSynonym", "val" : "ocular vesicle" }, { "pred" : "hasRelatedSynonym", "val" : "optic vesicles" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004139", "lbl" : "cardiogenic plate", "type" : "CLASS", "meta" : { "definition" : { "val" : "The first recognizable structure derived from the heart field." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "myocardial plate" }, { "pred" : "hasRelatedSynonym", "val" : "cardiac crescent" }, { "pred" : "hasRelatedSynonym", "val" : "cardiogenic crescent" }, { "pred" : "hasRelatedSynonym", "val" : "heart rudiment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004140", "lbl" : "primary heart field", "type" : "CLASS", "meta" : { "definition" : { "val" : "A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "first heart field" }, { "pred" : "hasExactSynonym", "val" : "primary heart field" }, { "pred" : "hasRelatedSynonym", "val" : "FHF" }, { "pred" : "hasRelatedSynonym", "val" : "PHF" }, { "pred" : "hasRelatedSynonym", "val" : "heart field" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004141", "lbl" : "heart tube", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial tube that will give rise to the mature heart." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "embryonic heart tube" }, { "pred" : "hasExactSynonym", "val" : "endocardial heart tube" }, { "pred" : "hasExactSynonym", "val" : "endocardial tube" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004151", "lbl" : "cardiac chamber", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cardiac chamber surrounds an enclosed cavity within the heart." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chamber of heart" }, { "pred" : "hasExactSynonym", "val" : "heart chamber" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004177", "lbl" : "hemopoietic organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organ that is part of the hematopoietic system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "haematological system organ" }, { "pred" : "hasExactSynonym", "val" : "haemopoietic system organ" }, { "pred" : "hasExactSynonym", "val" : "hematopoeitic organ" }, { "pred" : "hasExactSynonym", "val" : "hematopoietic system organ" }, { "pred" : "hasExactSynonym", "val" : "organ of haematological system" }, { "pred" : "hasExactSynonym", "val" : "organ of haemopoietic system" }, { "pred" : "hasExactSynonym", "val" : "organ of hematopoietic system" }, { "pred" : "hasExactSynonym", "val" : "organ of organa haemopoietica" }, { "pred" : "hasExactSynonym", "val" : "organa haemopoietica organ" }, { "pred" : "hasNarrowSynonym", "val" : "hematopoeitic or lymphoid organ" }, { "pred" : "hasNarrowSynonym", "val" : "lymph organ" }, { "pred" : "hasNarrowSynonym", "val" : "lymphoid organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004185", "lbl" : "endodermal part of digestive tract", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portions of the gut that is derived from endoderm." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "endodermal gut" }, { "pred" : "hasExactSynonym", "val" : "gut endoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004221", "lbl" : "intestine smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of smooth muscle tissue that is part of a intestine [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bowel involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "bowel non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "bowel smooth muscle" }, { "pred" : "hasExactSynonym", "val" : "bowel smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "intestine involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "intestine non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "intestine smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "involuntary muscle of bowel" }, { "pred" : "hasExactSynonym", "val" : "involuntary muscle of intestine" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of bowel" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of intestine" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of bowel" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of intestine" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of bowel" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of intestine" }, { "pred" : "hasRelatedSynonym", "val" : "intestinal muscularis" }, { "pred" : "hasRelatedSynonym", "val" : "intestinal smooth muscle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004225", "lbl" : "respiratory system smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of smooth muscle tissue that is part of a respiratory system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "respiratory smooth muscle" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of respiratory system" }, { "pred" : "hasRelatedSynonym", "val" : "airway smooth muscle" }, { "pred" : "hasRelatedSynonym", "val" : "airway smooth muscle cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004226", "lbl" : "gastrointestinal system smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of smooth muscle tissue that is part of a digestive system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of gastrointestinal system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004231", "lbl" : "anal region smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of smooth muscle tissue that is part of an anal region [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anal part of perineum involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "anal part of perineum non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "anal part of perineum smooth muscle" }, { "pred" : "hasExactSynonym", "val" : "anal part of perineum smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "anal region involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "anal region non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "anal region smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "anal triangle involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "anal triangle non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "anal triangle smooth muscle" }, { "pred" : "hasExactSynonym", "val" : "anal triangle smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "involuntary muscle of anal part of perineum" }, { "pred" : "hasExactSynonym", "val" : "involuntary muscle of anal region" }, { "pred" : "hasExactSynonym", "val" : "involuntary muscle of anal triangle" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of anal part of perineum" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of anal region" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of anal triangle" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of anal part of perineum" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of anal region" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of anal triangle" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of anal part of perineum" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of anal region" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of anal triangle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004232", "lbl" : "lymphatic vessel smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of smooth muscle tissue that is part of a lymphatic vessel [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "involuntary muscle of lymph vessel" }, { "pred" : "hasExactSynonym", "val" : "involuntary muscle of lymphatic vessel" }, { "pred" : "hasExactSynonym", "val" : "lymph vessel involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "lymph vessel non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "lymph vessel smooth muscle" }, { "pred" : "hasExactSynonym", "val" : "lymph vessel smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vessel involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vessel non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vessel smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of lymph vessel" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of lymphatic vessel" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of lymph vessel" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of lymphatic vessel" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of lymph vessel" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of lymphatic vessel" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004234", "lbl" : "iris smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of smooth muscle tissue that is part of a iris [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "involuntary muscle of iris" }, { "pred" : "hasExactSynonym", "val" : "iridial smooth muscle" }, { "pred" : "hasExactSynonym", "val" : "iris involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "iris non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "iris smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of iris" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of iris" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of iris" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004237", "lbl" : "blood vessel smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Smooth muscle found within, and composing the majority of the wall of blood vessels." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vessel involuntary muscle" }, { "pred" : "hasExactSynonym", "val" : "blood vessel non-striated muscle" }, { "pred" : "hasExactSynonym", "val" : "blood vessel smooth muscle tissue" }, { "pred" : "hasExactSynonym", "val" : "involuntary muscle of blood vessel" }, { "pred" : "hasExactSynonym", "val" : "non-striated muscle of blood vessel" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle of blood vessel" }, { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of blood vessel" }, { "pred" : "hasExactSynonym", "val" : "vascular smooth muscle" }, { "pred" : "hasExactSynonym", "val" : "vascular smooth muscle tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004253", "lbl" : "skin muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any muscle organ that is part of a skin of body [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "integumental system muscle" }, { "pred" : "hasExactSynonym", "val" : "muscle of integumental system" }, { "pred" : "hasExactSynonym", "val" : "muscle organ of skin" }, { "pred" : "hasExactSynonym", "val" : "skin muscle organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004274", "lbl" : "lateral ventricle choroid plexus epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "A choroid plexus epithelium that is part of a lateral ventricle [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "chorioid plexus of cerebral hemisphere epithelium of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "choroid plexus epithelial tissue of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "choroid plexus epithelium of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of choroid plexus of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "epithelium of choroid plexus of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle chorioid plexus of cerebral hemisphere epithelium" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle choroid plexus epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle epithelial tissue of choroid plexus" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle epithelium of chorioid plexus of cerebral hemisphere" }, { "pred" : "hasExactSynonym", "val" : "lateral ventricle epithelium of choroid plexus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004277", "lbl" : "eye muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A muscle that is part of the eye region." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004288", "lbl" : "skeleton", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "set of all bones" }, { "pred" : "hasExactSynonym", "val" : "set of bones of body" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004290", "lbl" : "dermomyotome", "type" : "CLASS", "meta" : { "definition" : { "val" : "The bilaminar epithelium formed from the myotome and dermatome." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "dermamyotome" }, { "pred" : "hasRelatedSynonym", "val" : "dermomyotomes" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004291", "lbl" : "heart rudiment", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "heart cone" }, { "pred" : "hasExactSynonym", "val" : "rudimentary heart" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004296", "lbl" : "respiratory system lymphatic vessel smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lymphatic vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "smooth muscle of lymph vessel of respiratory system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004297", "lbl" : "respiratory system blood vessel smooth muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "smooth muscle tissue of blood vessel of respiratory system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004362", "lbl" : "pharyngeal arch 1", "type" : "CLASS", "meta" : { "definition" : { "val" : "The first of the series of pharyngeal arches that develop into jaw bones or their homologs, and their associated nerves and arteries." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "1st pharyngeal arch" }, { "pred" : "hasExactSynonym", "val" : "branchial arch 1" }, { "pred" : "hasExactSynonym", "val" : "first branchial arch" }, { "pred" : "hasExactSynonym", "val" : "first pharyngeal arch" }, { "pred" : "hasExactSynonym", "val" : "first visceral arch" }, { "pred" : "hasExactSynonym", "val" : "mandibular arch" }, { "pred" : "hasExactSynonym", "val" : "visceral arch 1" }, { "pred" : "hasRelatedSynonym", "val" : "1st arch" }, { "pred" : "hasRelatedSynonym", "val" : "1st visceral arch" }, { "pred" : "hasRelatedSynonym", "val" : "arcus pharyngeus primus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004456", "lbl" : "entire sense organ system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sum of all sensory systems in an organism." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sense organ system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004464", "lbl" : "musculature of thorax", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any collection of muscles that is part of a thorax [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscle group of thorax" }, { "pred" : "hasExactSynonym", "val" : "muscles of thorax" }, { "pred" : "hasExactSynonym", "val" : "musculi thoracis" }, { "pred" : "hasExactSynonym", "val" : "set of muscles of thorax" }, { "pred" : "hasExactSynonym", "val" : "thoracic musculature" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004471", "lbl" : "musculature of pectoral girdle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of the musculature of the body in the pectoral girdle region. Includes pectoral and shoulder muscles." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscle group of pectoral girdle" }, { "pred" : "hasExactSynonym", "val" : "pectoral girdle muscles" }, { "pred" : "hasExactSynonym", "val" : "pectoral girdle musculature" }, { "pred" : "hasExactSynonym", "val" : "set of muscles of pectoral girdle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004473", "lbl" : "musculature of face", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any collection of muscles that is part of a face." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "entire facial musculature" }, { "pred" : "hasExactSynonym", "val" : "facial muscles" }, { "pred" : "hasExactSynonym", "val" : "muscle group of face" }, { "pred" : "hasExactSynonym", "val" : "musculi faciei" }, { "pred" : "hasRelatedSynonym", "val" : "set of facial muscles" }, { "pred" : "hasRelatedSynonym", "val" : "set of muscles of face" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004479", "lbl" : "musculature of trunk", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any collection of muscles that is part of a trunk [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscle group of trunk" }, { "pred" : "hasExactSynonym", "val" : "set of muscles of trunk" }, { "pred" : "hasRelatedSynonym", "val" : "muscular system of trunk" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004521", "lbl" : "vasculature of muscle organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vasculature that is part of a muscle organ [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscular organ vasculature" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004522", "lbl" : "vasculature of musculoskeletal system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vasculature that is part of a musculoskeletal system [Automatically generated definition]." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004529", "lbl" : "anatomical projection", "type" : "CLASS", "meta" : { "definition" : { "val" : "A projection or outgrowth of tissue from a larger body or organ." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "anatomical process" }, { "pred" : "hasBroadSynonym", "val" : "process" }, { "pred" : "hasExactSynonym", "val" : "processus" }, { "pred" : "hasExactSynonym", "val" : "projection" }, { "pred" : "hasNarrowSynonym", "val" : "flange" }, { "pred" : "hasNarrowSynonym", "val" : "flanges" }, { "pred" : "hasNarrowSynonym", "val" : "lamella" }, { "pred" : "hasNarrowSynonym", "val" : "lamellae" }, { "pred" : "hasNarrowSynonym", "val" : "lamina" }, { "pred" : "hasNarrowSynonym", "val" : "laminae" }, { "pred" : "hasNarrowSynonym", "val" : "organ process" }, { "pred" : "hasNarrowSynonym", "val" : "papilla" }, { "pred" : "hasNarrowSynonym", "val" : "process of organ" }, { "pred" : "hasNarrowSynonym", "val" : "processes" }, { "pred" : "hasNarrowSynonym", "val" : "projection" }, { "pred" : "hasNarrowSynonym", "val" : "projections" }, { "pred" : "hasNarrowSynonym", "val" : "ridge" }, { "pred" : "hasNarrowSynonym", "val" : "ridges" }, { "pred" : "hasNarrowSynonym", "val" : "shelf" }, { "pred" : "hasNarrowSynonym", "val" : "shelves" }, { "pred" : "hasRelatedSynonym", "val" : "anatomical protrusion" }, { "pred" : "hasRelatedSynonym", "val" : "protrusion" }, { "pred" : "hasRelatedSynonym", "val" : "spine" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004535", "lbl" : "cardiovascular system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that has as its parts the heart and blood vessels." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "CV system" }, { "pred" : "hasRelatedSynonym", "val" : "Herz und Gefaesssystem" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004536", "lbl" : "lymph vasculature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lymphatic trunks and ducts" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vasculature" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vessel network" }, { "pred" : "hasExactSynonym", "val" : "lymphatic vessels set" }, { "pred" : "hasExactSynonym", "val" : "set of lymphatic vessels" }, { "pred" : "hasExactSynonym", "val" : "trunci et ductus lymphatici" }, { "pred" : "hasRelatedSynonym", "val" : "lymph vessels" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004537", "lbl" : "blood vasculature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vascular network consisting of blood vessels." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood vascular network" }, { "pred" : "hasExactSynonym", "val" : "set of blood vessels" }, { "pred" : "hasRelatedSynonym", "val" : "blood system" }, { "pred" : "hasRelatedSynonym", "val" : "blood vessel system" }, { "pred" : "hasRelatedSynonym", "val" : "blood vessels" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004716", "lbl" : "conceptus", "type" : "CLASS", "meta" : { "definition" : { "val" : "The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "embryo plus adnexa" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004731", "lbl" : "neuromere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neural tube metameric segment" }, { "pred" : "hasExactSynonym", "val" : "neural tube segment" }, { "pred" : "hasExactSynonym", "val" : "neuromere" }, { "pred" : "hasExactSynonym", "val" : "neuromeres" }, { "pred" : "hasRelatedSynonym", "val" : "neural metamere" }, { "pred" : "hasRelatedSynonym", "val" : "neural segment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004732", "lbl" : "segmental subdivision of nervous system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "neuromere" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004734", "lbl" : "gastrula", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organism at the gastrula stage." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gastrula embryo" }, { "pred" : "hasRelatedSynonym", "val" : "blastocystis trilaminaris" }, { "pred" : "hasRelatedSynonym", "val" : "tri-laminar disc" }, { "pred" : "hasRelatedSynonym", "val" : "tri-laminar disk" }, { "pred" : "hasRelatedSynonym", "val" : "trilaminar blastocyst" }, { "pred" : "hasRelatedSynonym", "val" : "trilaminar blastoderm" }, { "pred" : "hasRelatedSynonym", "val" : "trilaminar disc" }, { "pred" : "hasRelatedSynonym", "val" : "trilaminar disk" }, { "pred" : "hasRelatedSynonym", "val" : "trilaminar germ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004755", "lbl" : "skeletal tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004756", "lbl" : "dermal skeletal element", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dermis-derived entity that is made of skeletal tissue." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "dermal element" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004765", "lbl" : "skeletal element", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004766", "lbl" : "cranial bone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a cranium." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cranium bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004768", "lbl" : "bone of lower jaw", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any bone that is part of the lower jaw skeleton. This includes (when present): the dentary/mandible, the articular, the splenial, the suprangular." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lower jaw bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004770", "lbl" : "articular system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that consists of all the joints of the body." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "joint system" }, { "pred" : "hasExactSynonym", "val" : "set of all joints of body" }, { "pred" : "hasRelatedSynonym", "val" : "set of all joints" }, { "pred" : "hasRelatedSynonym", "val" : "set of joints of body" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004785", "lbl" : "respiratory system mucosa", "type" : "CLASS", "meta" : { "definition" : { "val" : "The mucous membrane lining the respiratory tract." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius mucosa" }, { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "mucosa of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "mucosa of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "respiratory system mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "respiratory system mucous membrane" }, { "pred" : "hasRelatedSynonym", "val" : "laryngeal mucous membrane" }, { "pred" : "hasRelatedSynonym", "val" : "respiratory mucosa" }, { "pred" : "hasRelatedSynonym", "val" : "respiratory tract mucosa" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004786", "lbl" : "gastrointestinal system mucosa", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mucosa that is part of a gastrointestinal system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "digestive tract mucosa" }, { "pred" : "hasExactSynonym", "val" : "gut mucosa" }, { "pred" : "hasExactSynonym", "val" : "gut mucuous membrane" }, { "pred" : "hasExactSynonym", "val" : "mucosa of gut" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004797", "lbl" : "blood vessel layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any of the tissue layers that comprise a blood vessel. Examples: tunica media, tunica adventitia." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004807", "lbl" : "respiratory system epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a respiratory system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "apparatus respiratorius epithelium" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "epithelium of apparatus respiratorius" }, { "pred" : "hasExactSynonym", "val" : "epithelium of respiratory system" }, { "pred" : "hasExactSynonym", "val" : "respiratory system epithelial tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004808", "lbl" : "gastrointestinal system epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a digestive system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "digestive system epithelial tissue" }, { "pred" : "hasExactSynonym", "val" : "digestive system epithelium" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of digestive system" }, { "pred" : "hasExactSynonym", "val" : "epithelial tissue of gastrointestinal system" }, { "pred" : "hasExactSynonym", "val" : "epithelium of digestive system" }, { "pred" : "hasExactSynonym", "val" : "epithelium of gastrointestinal system" }, { "pred" : "hasExactSynonym", "val" : "gastrointestinal system epithelial tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004864", "lbl" : "vasculature of retina", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vasculature that is part of a retina [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "retina vasculature" }, { "pred" : "hasExactSynonym", "val" : "retina vasculature of camera-type eye" }, { "pred" : "hasExactSynonym", "val" : "retinal blood vessels" }, { "pred" : "hasExactSynonym", "val" : "retinal blood vessels set" }, { "pred" : "hasExactSynonym", "val" : "retinal vasculature" }, { "pred" : "hasExactSynonym", "val" : "set of blood vessels of retina" }, { "pred" : "hasExactSynonym", "val" : "set of retinal blood vessels" }, { "pred" : "hasExactSynonym", "val" : "vasa sanguinea retinae" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004872", "lbl" : "splanchnic layer of lateral plate mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "visceral mesoderm" }, { "pred" : "hasExactSynonym", "val" : "inner layer of lateral plate mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "splanchnic mesoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004902", "lbl" : "urogenital sinus epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "UGE" }, { "pred" : "hasExactSynonym", "val" : "epithelium of urogenital sinus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004905", "lbl" : "articulation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical cluster that connects two or more adjacent skeletal elements or hardened body parts." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "joint" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004906", "lbl" : "ectodermal part of digestive tract", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of the gut that is derived from ectoderm." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ectodermal gut" }, { "pred" : "hasExactSynonym", "val" : "gut ectoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004909", "lbl" : "epithelium of gonad", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium surrounding a gonad." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gonad epithelium" }, { "pred" : "hasExactSynonym", "val" : "gonadal epithelium" }, { "pred" : "hasRelatedSynonym", "val" : "gonadal sheath" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004921", "lbl" : "subdivision of digestive tract", "type" : "CLASS", "meta" : { "definition" : { "val" : "A proximal-distal subdivision of the digestive tract." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "alimentary system subdivision" }, { "pred" : "hasRelatedSynonym", "val" : "intestinal tract" }, { "pred" : "hasRelatedSynonym", "val" : "segment of intestinal tract" }, { "pred" : "hasRelatedSynonym", "val" : "subdivision of alimentary system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0004923", "lbl" : "organ component layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of a wall of an organ that forms a layer." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005057", "lbl" : "immune organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ that is part of a immune system [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "immune system organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005061", "lbl" : "neural groove", "type" : "CLASS", "meta" : { "definition" : { "val" : "The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005062", "lbl" : "neural fold", "type" : "CLASS", "meta" : { "definition" : { "val" : "One of the two elevated edges of the neural groove[GO,MP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "medullary fold" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005068", "lbl" : "neural rod", "type" : "CLASS", "meta" : { "definition" : { "val" : "A solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "neural tube rod" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005085", "lbl" : "ectodermal placode", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "epithelial placode" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005090", "lbl" : "muscle structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "musculus" }, { "pred" : "hasRelatedSynonym", "val" : "muscle" }, { "pred" : "hasRelatedSynonym", "val" : "muscle element" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005156", "lbl" : "reproductive structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any anatomical structure that is part of the reproductive system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "reproductive system element" }, { "pred" : "hasExactSynonym", "val" : "reproductive system structure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005157", "lbl" : "epithelial fold", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial sheet bent on a linear axis." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005162", "lbl" : "multi cell part structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "multi-cell-component structure" }, { "pred" : "hasExactSynonym", "val" : "multi-cell-part structure" }, { "pred" : "hasRelatedSynonym", "val" : "cell part cluster" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005177", "lbl" : "trunk region element", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ or element that part of the trunk region. The trunk region can be further subdividied into thoracic (including chest and thoracic cavity) and abdominal (including abdomen and pelbis) regions." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "trunk organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005178", "lbl" : "thoracic cavity element", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ or element that is in the thoracic cavity. Examples: lung, heart, longus colli." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "thoracic cavity organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005181", "lbl" : "thoracic segment organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ that part of the thoracic segment region. This region can be further subdividied chest and thoracic cavity regions." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "upper body organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005253", "lbl" : "head mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cephalic mesenchyme" }, { "pred" : "hasRelatedSynonym", "val" : "cranial mesenchyme" }, { "pred" : "hasRelatedSynonym", "val" : "desmocranium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005256", "lbl" : "trunk mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a developing trunk." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "trunk and cervical mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005281", "lbl" : "ventricular system of central nervous system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord[WP]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CNS ventricular system" }, { "pred" : "hasExactSynonym", "val" : "ventricular system" }, { "pred" : "hasExactSynonym", "val" : "ventricular system of neuraxis" }, { "pred" : "hasRelatedSynonym", "val" : "ventricle system" }, { "pred" : "hasRelatedSynonym", "val" : "ventriculi cerebri" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005282", "lbl" : "ventricular system of brain", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brain ventricular system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005283", "lbl" : "tela choroidea", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structure found in the walls of the ventricles of the brain, consisting of part of the meninges (pia mater in mammals) plus ependyma[cjm]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "tela chorioidea" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005289", "lbl" : "tela choroidea of telencephalic ventricle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Tela chorioidea that lines the telencephalic ventricle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tela chorioidea of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "tela chorioidea of telencephalic ventricle" }, { "pred" : "hasExactSynonym", "val" : "tela chorioidea telencephalic ventricle" }, { "pred" : "hasExactSynonym", "val" : "tela choroidea (ventriculi lateralis)" }, { "pred" : "hasExactSynonym", "val" : "tela choroidea of lateral ventricle" }, { "pred" : "hasExactSynonym", "val" : "tela choroidea telencephalic ventricle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005291", "lbl" : "embryonic tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of tissue that is part of an embryo." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "portion of embryonic tissue" }, { "pred" : "hasRelatedSynonym", "val" : "developing tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005292", "lbl" : "extraembryonic tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "extra-embryonic tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005358", "lbl" : "ventricle of nervous system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A layer in the central nervous system that lines system of communicating cavities in the brain and spinal cord." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ventricular layer" }, { "pred" : "hasRelatedSynonym", "val" : "region of wall of ventricular system of neuraxis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005388", "lbl" : "photoreceptor array", "type" : "CLASS", "meta" : { "definition" : { "val" : "An array of photoreceptors and any supporting cells found in an eye." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "light-sensitive tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005389", "lbl" : "transparent eye structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "lens" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005409", "lbl" : "alimentary part of gastrointestinal system", "type" : "CLASS", "meta" : { "definition" : { "val" : "The part of the digestive system that excludes the hepatobiliary system." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "GI tract" }, { "pred" : "hasRelatedSynonym", "val" : "alimentary system" }, { "pred" : "hasRelatedSynonym", "val" : "alimentary tract" }, { "pred" : "hasRelatedSynonym", "val" : "gastro-intestinal system" }, { "pred" : "hasRelatedSynonym", "val" : "gastroenterological system" }, { "pred" : "hasRelatedSynonym", "val" : "gastrointestinal (GI) tract" }, { "pred" : "hasRelatedSynonym", "val" : "gastrointestinal system" }, { "pred" : "hasRelatedSynonym", "val" : "gastrointestinal tract" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005423", "lbl" : "developing anatomical structure", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "developing structure" }, { "pred" : "hasRelatedSynonym", "val" : "developmental structure" }, { "pred" : "hasRelatedSynonym", "val" : "developmental tissue" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005426", "lbl" : "lens vesicle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of tissue that gives rise to the lens." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "hollow lens vesicle" }, { "pred" : "hasNarrowSynonym", "val" : "solid lens vesicle" }, { "pred" : "hasRelatedSynonym", "val" : "immature lens" }, { "pred" : "hasRelatedSynonym", "val" : "lens mass" }, { "pred" : "hasRelatedSynonym", "val" : "presumptive lens" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005498", "lbl" : "primitive heart tube", "type" : "CLASS", "meta" : { "definition" : { "val" : "Multi-tissue structure that arises from the heart rudiment and will become the heart tube." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "primitive heart tube" }, { "pred" : "hasNarrowSynonym", "val" : "early primitive heart tube" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005564", "lbl" : "gonad primordium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of tissue that gives rise to the immature gonad." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "future gonad" }, { "pred" : "hasExactSynonym", "val" : "gonadal primordium" }, { "pred" : "hasExactSynonym", "val" : "primitive gonad" }, { "pred" : "hasExactSynonym", "val" : "undifferentiated gonad" }, { "pred" : "hasRelatedSynonym", "val" : "immature gonad" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005598", "lbl" : "trunk somite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A somite that is part of a trunk." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005629", "lbl" : "vascular plexus", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vascular network formed by frequent anastomoses between the blood vessels (arteries or veins) of a part." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "plexus vasculosus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005638", "lbl" : "anterior chamber epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a anterior chamber of eyeball." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005656", "lbl" : "lens vesicle epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a lens vesicle." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005744", "lbl" : "bone foramen", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "foramen" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005764", "lbl" : "acellular membrane", "type" : "CLASS", "meta" : { "definition" : { "val" : "An acellular anatomical structure that is the bounding layer of a anatomical structure." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005769", "lbl" : "basement membrane of epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An acellular membrane that is part of the epithelium, lies adjacent to the epithelial cells, and is the fusion of the the basal lamina and the reticular lamina." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "basement membrane of connective tissue" }, { "pred" : "hasExactSynonym", "val" : "membrana basalis" }, { "pred" : "hasRelatedSynonym", "val" : "basement membrane" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005856", "lbl" : "developing mesenchymal condensation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A delimited region of dense mesenchyme within looser mesenchyme." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchyme condensation" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005867", "lbl" : "mandibular prominence", "type" : "CLASS", "meta" : { "definition" : { "val" : "The paired ventral prominences formed by bifurcation of the first pharyngeal arches in the embryo; the two prominences unite ventrally and fuse to form the mandible and lower lip." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "mandibular process" }, { "pred" : "hasRelatedSynonym", "val" : "mandibular 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Examples: urothelium, transitional epithelium of ureter, epithelium of prostatic gland.[FMA]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "endoderm-derived epithelium" }, { "pred" : "hasExactSynonym", "val" : "endoepithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005944", "lbl" : "axial skeleton plus cranial skeleton", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of skeleton which consists of cranial skeleton, set of all vertebrae, set of all ribs and sternum[FMA, modified]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "skeleton axiale" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005983", "lbl" : "heart layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "The laminar structure of the heart." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0005985", "lbl" : "coronary vessel", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006003", "lbl" : "integumentary adnexa", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure embedded in or located in the integument that is part of the integumental system. Examples: hair, follicles, skin glands, claws, nails, feathers." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "body hair or bristle" }, { "pred" : "hasRelatedSynonym", "val" : "adnexae cutis" }, { "pred" : "hasRelatedSynonym", "val" : "skin adnexa" }, { "pred" : "hasRelatedSynonym", "val" : "skin adnexal structure" }, { "pred" : "hasRelatedSynonym", "val" : "skin appendage" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006211", "lbl" : "buccopharyngeal membrane", "type" : "CLASS", "meta" : { "definition" : { "val" : "The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "oral membrane" }, { "pred" : "hasRelatedSynonym", "val" : "oral plate" }, { "pred" : "hasRelatedSynonym", "val" : "oropharyngeal membrane" }, { "pred" : "hasRelatedSynonym", "val" : "pharyngeal membrane" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006222", "lbl" : "future diencephalon", "type" : "CLASS", "meta" : { "definition" : { "val" : "The foremost region of the future forebrain that develops into the diencephalon." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "presumptive diencephalon" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006238", "lbl" : "future brain", "type" : "CLASS", "meta" : { "definition" : { "val" : "The embryonic precursor of the brain." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brain rudiment" }, { "pred" : "hasExactSynonym", "val" : "presumptive brain" }, { "pred" : "hasNarrowSynonym", "val" : "encephalon" }, { "pred" : "hasRelatedSynonym", "val" : "embryonic brain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006240", "lbl" : "future forebrain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A presumptive structure that has the potential to develop into a forebrain." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "future prosencephalon" }, { "pred" : "hasExactSynonym", "val" : "presumptive forebrain" }, { "pred" : "hasExactSynonym", "val" : "presumptive prosencephalon" }, { "pred" : "hasRelatedSynonym", "val" : "prosencephalon" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006264", "lbl" : "mouth-foregut junction", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical junctions that overlaps the mouth and foregut." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006284", "lbl" : "early prosencephalic vesicle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Future brain vesicle that gives rise to telencephalic ventricle/lateral ventricles and 3rd ventricle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "prosencephalic vesicle" }, { "pred" : "hasNarrowSynonym", "val" : "preevaginated forebrain vesicle" }, { "pred" : "hasRelatedSynonym", "val" : "forebrain ventricle" }, { "pred" : "hasRelatedSynonym", "val" : "forebrain vesicle" }, { "pred" : "hasRelatedSynonym", "val" : "prosencephalic ventricle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006311", "lbl" : "chamber of eyeball", "type" : "CLASS", "meta" : { "definition" : { "val" : "A segment of the eyeball that is filled with refractive media." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "eye chamber" }, { "pred" : "hasExactSynonym", "val" : "eyeball chamber" }, { "pred" : "hasRelatedSynonym", "val" : "chamber of eye" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006312", "lbl" : "ocular refractive media", "type" : "CLASS", "meta" : { "definition" : { "val" : "Body substance in a liquid or semi-solid state in the eyeball which serves to refract light." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006314", "lbl" : "bodily fluid", "type" : "CLASS", "meta" : { "definition" : { "val" : "Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "fluid" }, { "pred" : "hasExactSynonym", "val" : "body fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006539", "lbl" : "mammary gland fluid/secretion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A substance that is secreted by a mammary gland. The substance may differ depending on phase, with colostrum produced during pregancy/early lactation, and milk produced afterwards." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "lactiferous gland fluid" }, { "pred" : "hasRelatedSynonym", "val" : "lactiferous gland secretion" }, { "pred" : "hasRelatedSynonym", "val" : "mammary gland fluid" }, { "pred" : "hasRelatedSynonym", "val" : "mammary gland secreted fluid" }, { "pred" : "hasRelatedSynonym", "val" : "mammary gland secretion" }, { "pred" : "hasRelatedSynonym", "val" : "secretion of mammary gland" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006555", "lbl" : "excretory tube", "type" : "CLASS", "meta" : { "definition" : { "val" : "A tube that is part of a excretory system." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006558", "lbl" : "lymphatic part of lymphoid system", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ system subdivision that is a network of vessels capable of removing accumulating protein and fluid from the interstitial space and returning it to the vascular space. In some species, this network is connected to the immune system via lymph nodes and lymphocyte-producing organs, with the whole being the lymphoid system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lymphatic system" }, { "pred" : "hasExactSynonym", "val" : "lymphatic tree system" }, { "pred" : "hasRelatedSynonym", "val" : "lymporeticular system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006562", "lbl" : "pharynx", "type" : "CLASS", "meta" : { "definition" : { "val" : "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "anterior part of foregut" }, { "pred" : "hasRelatedSynonym", "val" : "pharyngeal tube" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006568", "lbl" : "hypothalamic nucleus", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleus of brain that is part of a hypothalamus." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nucleus of hypothalamus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006569", "lbl" : "diencephalic nucleus", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleus of brain that is part of a diencephalon." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006595", "lbl" : "presumptive endoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Presumptive structure of the blastula that will develop into endoderm." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006596", "lbl" : "presumptive blood", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "future blood" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006598", "lbl" : "presumptive structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Portion of embryonic tissue determined by fate mapping to become a structure." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "future structure" }, { "pred" : "hasExactSynonym", "val" : "presumptive structures" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006601", "lbl" : "presumptive ectoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Presumptive structure of the blastula that will develop into ectoderm." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "presumptive epidermis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006603", "lbl" : "presumptive mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Presumptive structure of the blastula that will develop into mesoderm." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006612", "lbl" : "shell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rigid covering that envelops an object." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006876", "lbl" : "vasculature of organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "A vasculature that is part of a organ." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "organ vasculature" }, { "pred" : "hasExactSynonym", "val" : "set of blood vessels of organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006904", "lbl" : "head mesenchyme from mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "A head mesenchyme that develops_from a mesoderm." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "head mesenchyme derived from mesoderm" }, { "pred" : "hasExactSynonym", "val" : "head mesenchyme from head mesoderm" }, { "pred" : "hasExactSynonym", "val" : "head mesenchyme from mesoderm" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme derived from head mesoderm" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme from head mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "cranial mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "head mesoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006905", "lbl" : "mandibular process mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a mandibular prominence." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchyme of mandibular process" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme of mandibular prominence" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0006965", "lbl" : "vascular cord", "type" : "CLASS", "meta" : { "definition" : { "val" : "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007005", "lbl" : "cardiogenic splanchnic mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "The splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cardiogenic splanchnopleure" }, { "pred" : "hasRelatedSynonym", "val" : "cardiac mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "cardiogenic mesoderm" }, { "pred" : "hasRelatedSynonym", "val" : "cardiogenic region" }, { "pred" : "hasRelatedSynonym", "val" : "heart primordia" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007010", "lbl" : "cleaving embryo", "type" : "CLASS", "meta" : { "definition" : { "val" : "Organism at the cleavage stage." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007026", "lbl" : "presumptive gut", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "future digestive tract" }, { "pred" : "hasExactSynonym", "val" : "future digestive tube" }, { "pred" : "hasExactSynonym", "val" : "future gut" }, { "pred" : "hasExactSynonym", "val" : "primitive gut" 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}, { "pred" : "hasExactSynonym", "val" : "head neural crest derived mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007237", "lbl" : "1st arch mandibular component", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ventral pharyngeal arch 1" }, { "pred" : "hasRelatedSynonym", "val" : "ventral mandibular arch" }, { "pred" : "hasRelatedSynonym", "val" : "ventral visceral arch 1" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007245", "lbl" : "nuclear complex of neuraxis", "type" : "CLASS", "meta" : { "definition" : { "val" : "Gray matter of the central nervous system which is a collection of clustered nuclei." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cluster of neural nuclei" }, { "pred" : "hasRelatedSynonym", "val" : "neural nuclei" }, { "pred" : "hasRelatedSynonym", "val" : "nuclear complex" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007282", "lbl" : "presumptive segmental plate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A presumptive structure that has the potential to develop into a presomitic mesoderm." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "presumptive segmental plates" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007284", "lbl" : "presumptive neural plate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A presumptive structure that has the potential to develop into a neural plate." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "prospective neuroectoderm" }, { "pred" : "hasExactSynonym", "val" : "prospective vegetal ectoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007285", "lbl" : "presumptive paraxial mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "The part of the blastula that has the potential to develop into a paraxial mesoderm." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "future paraxial mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "future paraxial mesoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007376", "lbl" : "outer epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epidermis" }, { "pred" : "hasExactSynonym", "val" : "epidermis (sensu Metazoa)" }, { "pred" : "hasExactSynonym", "val" : "outer epidermal layer" }, { "pred" : "hasExactSynonym", "val" : "outer epithelial layer" }, { "pred" : "hasRelatedSynonym", "val" : "hypoderm" }, { "pred" : "hasRelatedSynonym", "val" : "hypodermis" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007383", "lbl" : "enveloping layer of ectoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Outermost layer of cells surrounding the embryo." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "EVL" }, { "pred" : "hasExactSynonym", "val" : "enveloping layer" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007500", "lbl" : "epithelial tube open at both ends", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial tube open at both ends that allows fluid flow." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007503", "lbl" : "epithelial vesicle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A closed epithelium with a lumen." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007524", "lbl" : "dense mesenchyme tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme with little extracellular matrix." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007530", "lbl" : "migrating mesenchyme population", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchymal cells that are migrating." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007625", "lbl" : "pigment epithelium of eye", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "eye pigment epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007651", "lbl" : "anatomical junction", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that connects two structures." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "junction" }, { "pred" : "hasExactSynonym", "val" : "anatomical junction" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007688", "lbl" : "anlage", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "field" }, { "pred" : "hasExactSynonym", "val" : "developmental field" }, { "pred" : "hasRelatedSynonym", "val" : "future organ" }, { "pred" : "hasRelatedSynonym", "val" : "organ field" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007719", "lbl" : "bone of reproductive organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a reproductive organ." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "baculum" }, { "pred" : "hasRelatedSynonym", "val" : "os penis/os clitoris" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007779", "lbl" : "transudate", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any bodily fluid that has passed through a membrane such as the capillary wall, as a result of unbalanced hydrostatic and osmotic forces." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "plasma ultrafiltrate" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007794", "lbl" : "secretion of serous gland", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any fluid produced by a serous gland." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "serous fluid" }, { "pred" : "hasExactSynonym", "val" : "serosal fluid" }, { "pred" : "hasExactSynonym", "val" : "serous gland fluid" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007798", "lbl" : "vascular system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical system that consists of all blood and lymph vessels." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007811", "lbl" : "craniocervical region", "type" : "CLASS", "meta" : { "definition" : { "val" : "The anteriormost subdivision of the body that includes the head, jaws, pharyngeal region and the neck (if present). In vertebrates this is the subdivision that includes the cervical vertebrae." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cephalic area" }, { "pred" : "hasRelatedSynonym", "val" : "cephalic part of animal" }, { "pred" : "hasRelatedSynonym", "val" : "cephalic region" }, { "pred" : "hasRelatedSynonym", "val" : "head and neck" }, { "pred" : "hasRelatedSynonym", "val" : "head or neck" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007823", "lbl" : "appendage girdle region", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "girdle" }, { "pred" : "hasBroadSynonym", "val" : "girdle region" }, { "pred" : "hasRelatedSynonym", "val" : "fin girdle" }, { "pred" : "hasRelatedSynonym", "val" : "fin girdle region" }, { "pred" : "hasRelatedSynonym", "val" : "limb girdle" }, { "pred" : "hasRelatedSynonym", "val" : "limb girdle region" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007828", "lbl" : "girdle bone/zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a appendage girdle region." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "girdle bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007829", "lbl" : "pectoral girdle bone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a pectoral girdle region." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bone of pectoral girdle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007831", "lbl" : "pectoral girdle skeleton", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of a limb or fin skeleton consisting of bones which connects the upper limb or fin to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle. In those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]. Examples: There are only two instances, right and left pectoral girdle skeletons." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "skeletal parts of pectoral girdle" }, { "pred" : "hasExactSynonym", "val" : "skeleton of pectoral girdle" }, { "pred" : "hasRelatedSynonym", "val" : "cingulum pectorale" }, { "pred" : "hasRelatedSynonym", "val" : "pectoral girdle" }, { "pred" : "hasRelatedSynonym", "val" : "scapular girdle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0007914", "lbl" : "bone of craniocervical region", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a craniocervical region." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "head or neck bone" }, { "pred" : "hasRelatedSynonym", "val" : "cranial bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0008114", "lbl" : "joint of girdle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A skeletal joint that is part of a appendage girdle region." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "girdle joint" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0008229", "lbl" : "craniocervical region musculature", "type" : "CLASS", "meta" : { "definition" : { "val" : "Musculature system of the pharyngeal and head regions." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "head or neck muscle" }, { "pred" : "hasRelatedSynonym", "val" : "head muscles" }, { "pred" : "hasRelatedSynonym", "val" : "head or neck muscle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0008814", "lbl" : "pharyngeal arch system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A transient embryonic complex that comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming, which may include (depending on species) the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear[GO,modified]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "embryonic pharyngeal complex" }, { "pred" : "hasExactSynonym", "val" : "pharyngeal apparatus" }, { "pred" : "hasExactSynonym", "val" : "pharyngeal system" }, { "pred" : "hasRelatedSynonym", "val" : "pharyngeal arch complex" }, { "pred" : "hasRelatedSynonym", "val" : "pharyngeal arch region" }, { "pred" : "hasRelatedSynonym", "val" : "pharyngeal arches and clefts" }, { "pred" : "hasRelatedSynonym", "val" : "pharyngeal complex" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0008816", "lbl" : "embryonic head", "type" : "CLASS", "meta" : { "definition" : { "val" : "A head that is part of a embryo." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0008823", "lbl" : "neural tube derived brain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A brain that develops_from a neural tube." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "vertebrate brain" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0008998", "lbl" : "vasculature of brain", "type" : "CLASS", "meta" : { "definition" : { "val" : "System pertaining to blood vessels in the brain." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "brain vasculature" }, { "pred" : "hasExactSynonym", "val" : "cerebrovascular system" }, { "pred" : "hasExactSynonym", "val" : "intracerebral vasculature" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009142", "lbl" : "entire embryonic mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Sum total of mesenchyme in the embryo." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009145", "lbl" : "pharyngeal region of foregut", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pharyngeal region" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009472", "lbl" : "axilla", "type" : "CLASS", "meta" : { "definition" : { "val" : "The axilla is the area directly under the joint where the forelimb connects to the shoulder." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "arm pit" }, { "pred" : "hasExactSynonym", "val" : "armpit" }, { "pred" : "hasExactSynonym", "val" : "axillary region" }, { "pred" : "hasExactSynonym", "val" : "regio axillaris" }, { "pred" : "hasRelatedSynonym", "val" : "armpits" }, { "pred" : "hasRelatedSynonym", "val" : "axilla" }, { "pred" : "hasRelatedSynonym", "val" : "axillae" }, { "pred" : "hasRelatedSynonym", "val" : "axillary region" }, { "pred" : "hasRelatedSynonym", "val" : "oxter" }, { "pred" : "hasRelatedSynonym", "val" : "underarm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009479", "lbl" : "ectoderm of buccopharyngeal membrane", "type" : "CLASS", "meta" : { "definition" : { "val" : "An ectoderm that is part of a buccopharyngeal membrane." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009480", "lbl" : "endoderm of buccopharyngeal membrane", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endoderm that is part of a buccopharyngeal membrane." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009494", "lbl" : "pharyngeal arch mesenchymal region", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of mesenchymal tissue associated with an individual pharyngeal arch." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "branchial arch mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "pharyngeal arch mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009503", "lbl" : "mesenchyme of hindgut", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a developing hindgut." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hindgut associated mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009521", "lbl" : "anal membrane endodermal component", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endoderm that is part of a anal region." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009569", "lbl" : "subdivision of trunk", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "region of trunk" }, { "pred" : "hasExactSynonym", "val" : "trunk subdivision" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009584", "lbl" : "1st arch mandibular mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a 1st arch mandibular component." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchymal region of mandibular component of first pharyngeal arch" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme of mandibular component" }, { "pred" : "hasRelatedSynonym", "val" : "mandibular component mesenchyme" }, { "pred" : "hasRelatedSynonym", "val" : "mandibular mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009610", "lbl" : "forebrain neural plate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neural plate that develops_from a future forebrain." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009618", "lbl" : "trunk paraxial mesoderm", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "trunk and cervical paraxial mesenchyme" }, { "pred" : "hasRelatedSynonym", "val" : "trunk paraxial mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009663", "lbl" : "telencephalic nucleus", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleus of brain that is part of a telencephalon." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009676", "lbl" : "early telencephalic vesicle", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "early telencephalic vesicle" }, { "pred" : "hasRelatedSynonym", "val" : "early telencephalic ventricle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009751", "lbl" : "cardiac mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "heart mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009846", "lbl" : "embryonic cloacal epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a embryonic cloaca." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cloacal epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009881", "lbl" : "anterior lateral plate mesoderm", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ALPM" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009891", "lbl" : "facial mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a developing face." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "face mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "mesenchyme of face" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0009920", "lbl" : "optic neural crest", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010000", "lbl" : "multicellular anatomical structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that has more than one cell as a part." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "multicellular structure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010042", "lbl" : "1st arch mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a pharyngeal arch 1." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchyme of 1st arch" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010046", "lbl" : "entire pharyngeal arch associated mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "associated mesenchyme of pharyngeal region" }, { "pred" : "hasExactSynonym", "val" : "entire branchial arch associated mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "pharyngeal arch associated mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010064", "lbl" : "open anatomical space", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical space with at least one opening to another space or the exterior." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010077", "lbl" : "cuboidal epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium consisting of cuboidal epithelial cells." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010083", "lbl" : "future dermis", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that has the potential to develop into a dermis." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010188", "lbl" : "protuberance", "type" : "CLASS", "meta" : { "definition" : { "val" : "A roughly circular bulge in a surface." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010225", "lbl" : "thalamic complex", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010230", "lbl" : "eyeball of camera-type eye", "type" : "CLASS", "meta" : { "definition" : { "val" : "The core globe-shaped component of the camera-type eye." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bulbus oculi" }, { "pred" : "hasExactSynonym", "val" : "eye globe" }, { "pred" : "hasExactSynonym", "val" : "eyeball" }, { "pred" : "hasRelatedSynonym", "val" : "eye" }, { "pred" : "hasRelatedSynonym", "val" : "globe" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010252", "lbl" : "1st arch mandibular mesenchyme from neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a neural crest and is part of a 1st arch mandibular mesenchyme." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010258", "lbl" : "mesenchyme from rhombencephalic neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a rhombencephalon neural crest." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010259", "lbl" : "1st arch mesenchyme from neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a neural crest and is part of a 1st arch mesenchyme." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchyme derived from neural crest of mesenchyme of 1st arch" }, { "pred" : "hasExactSynonym", "val" : "neural crest derived arch 1 mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "pharyngeal arch 1 mesenchyme from neural crest" }, { "pred" : "hasRelatedSynonym", "val" : "branchial arch 1 mesenchyme from neural crest" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010303", "lbl" : "extraembryonic epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a extraembryonic structure." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "extra-embryonic epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010312", "lbl" : "immature eye", "type" : "CLASS", "meta" : { "definition" : { "val" : "Developing anatomical structure that develops into the eyeball and associated structures." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "future eye" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010313", "lbl" : "neural crest-derived structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that develops from the neural crest." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010314", "lbl" : "structure with developmental contribution from neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical structure that has some part that develops from the neural crest." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010316", "lbl" : "germ layer / neural crest", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010321", "lbl" : "skeletal element of eye region", "type" : "CLASS", "meta" : { "definition" : { "val" : "A skeletal element that is part of a orbital region." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "eye skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "ocular skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "skeletal element of orbital region" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010323", "lbl" : "cranial skeletal system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "cranial skeleton" }, { "pred" : "hasNarrowSynonym", "val" : "osteocranium" }, { "pred" : "hasRelatedSynonym", "val" : "cranium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010336", "lbl" : "mandibular process mesenchyme from neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a neural crest and is part of a mandibular process mesenchyme." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010337", "lbl" : "mandibular process mesenchyme from head mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a mandibular process mesenchyme." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010339", "lbl" : "1st arch mandibular mesenchyme from head mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mandibular mesenchyme." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010341", "lbl" : "1st arch mesenchyme from head mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mesenchyme." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchyme derived from head mesoderm of mesenchyme of 1st arch" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010359", "lbl" : "pharyngeal arch mesenchyme from neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a neural crest and is part of a entire pharyngeal arch associated mesenchyme." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "arch mesenchyme from neural crest" }, { "pred" : "hasExactSynonym", "val" : "branchial arch mesenchyme from neural crest" }, { "pred" : "hasExactSynonym", "val" : "neural crest derived arch mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010360", "lbl" : "pharyngeal arch mesenchyme from head mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a entire pharyngeal arch associated mesenchyme." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "arch mesenchyme from head mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "branchial arch mesenchyme from head mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "head mesenchyme derived arch mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010371", "lbl" : "ecto-epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium composed of cells that develops from the ectoderm[FMA,modified]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ectoderm-derived epithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010427", "lbl" : "ciliary processes", "type" : "CLASS", "meta" : { "definition" : { "val" : "The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ciliary processes" }, { "pred" : "hasExactSynonym", "val" : "ciliary processes set" }, { "pred" : "hasExactSynonym", "val" : "processus ciliares" }, { "pred" : "hasExactSynonym", "val" : "set of ciliary processes" }, { "pred" : "hasRelatedSynonym", "val" : "ciliary process" }, { "pred" : "hasRelatedSynonym", "val" : "processus ciliares" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010707", "lbl" : "appendage girdle complex", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organism subdivision that includes both an appendage and its associated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "appendage complex" }, { "pred" : "hasExactSynonym", "val" : "appendage-girdle complex" }, { "pred" : "hasExactSynonym", "val" : "appendage/girdle complex" }, { "pred" : "hasExactSynonym", "val" : "girdle plus limb or fin" }, { "pred" : "hasRelatedSynonym", "val" : "limb" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010708", "lbl" : "pectoral complex", "type" : "CLASS", "meta" : { "definition" : { "val" : "Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "pectoral appendage/girdle complex" }, { "pred" : "hasExactSynonym", "val" : "pectoral girdle plus anterior limb or fin" }, { "pred" : "hasExactSynonym", "val" : "pectoral girdle plus pectoral limb or fin" }, { "pred" : "hasRelatedSynonym", "val" : "upper limb" }, { "pred" : "hasRelatedSynonym", "val" : "upper limb and pectoral girdle" }, { "pred" : "hasRelatedSynonym", "val" : "upper limb and shoulder" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010719", "lbl" : "girdle skeleton", "type" : "CLASS", "meta" : { "definition" : { "val" : "The subdivision of the skeleton of either the pectoral or pelvic girdle." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "skeleton of girdle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010740", "lbl" : "bone of appendage girdle complex", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "bone of extended limb/fin region" }, { "pred" : "hasRelatedSynonym", "val" : "limb bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010741", "lbl" : "bone of pectoral complex", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone that is part of a pectoral complex. Examples: scapula, manus phalanx, any carpal bone, any bone of the pectoral fin." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "wing bone" }, { "pred" : "hasRelatedSynonym", "val" : "bone of forelimb or pectoral fin or pectoral girdle" }, { "pred" : "hasRelatedSynonym", "val" : "forelimb bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0010912", "lbl" : "subdivision of skeleton", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "skeletal subdivision" }, { "pred" : "hasRelatedSynonym", "val" : "subdivision of skeleton (in vivo)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011108", "lbl" : "synovial joint of pectoral girdle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A synovial joint that is part of a pectoral girdle region." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "joint of shoulder girdle" }, { "pred" : "hasExactSynonym", "val" : "pectoral girdle joint" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011134", "lbl" : "nonsynovial joint", "type" : "CLASS", "meta" : { "definition" : { "val" : "Joint in which the articulating bones or cartilages are connected by ligaments or fibrocartilage without an intervening synovial cavity. Examples: sagittal suture, inferior tibiofibular syndesmosis, costochondral joint, pubic symphysis." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "solid joint" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011137", "lbl" : "axial skeletal system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of the skeletal system which consists of the axial skeleton plus associated joints." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011138", "lbl" : "postcranial axial skeletal system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of the skeletal system which consists of the postcranial axial skeleton plus associated joints." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "axial skeletal system" }, { "pred" : "hasExactSynonym", "val" : "post-cranial axial skeletal system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011156", "lbl" : "facial skeleton", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of skull that consists of the facial bones." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "facial skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "facial bone" }, { "pred" : "hasRelatedSynonym", "val" : "ossa facialia" }, { "pred" : "hasRelatedSynonym", "val" : "ossa faciei" }, { "pred" : "hasRelatedSynonym", "val" : "viscerocranium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011158", "lbl" : "primary subdivision of skull", "type" : "CLASS", "meta" : { "definition" : { "val" : "The skull can be divided into two: the neurocranium and the facial skeleton." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "skull subdivision" }, { "pred" : "hasExactSynonym", "val" : "subdivision of skull" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011215", "lbl" : "central nervous system cell part cluster", "type" : "CLASS", "meta" : { "definition" : { "val" : "A multi cell part structure that is part of a central nervous system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cell part cluster of neuraxis" }, { "pred" : "hasExactSynonym", "val" : "neuraxis layer" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011216", "lbl" : "organ system subdivision", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of an anatomical system." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011222", "lbl" : "intra-ocular muscle", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "intrinsic muscle of eyeball" }, { "pred" : "hasExactSynonym", "val" : "intrinsic ocular muscle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011249", "lbl" : "appendicular skeletal system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011272", "lbl" : "embryonic skin basal layer", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "basal cell layer of skin" }, { "pred" : "hasRelatedSynonym", "val" : "outer epithelium of body" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011300", "lbl" : "gray matter of telencephalon", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of gray matter that is part of a telencephalon." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "predominantly gray regional part of telencephalon" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011362", "lbl" : "cranial blood vasculature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vasculature that is part of a head." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cranial blood vessel" }, { "pred" : "hasExactSynonym", "val" : "set of blood vessels of head" }, { "pred" : "hasRelatedSynonym", "val" : "cranial blood vessels" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011363", "lbl" : "cranial lymph vasculature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A lymph vasculature that is part of a head." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cranial lymph vessel" }, { "pred" : "hasExactSynonym", "val" : "cranial lymphatics" }, { "pred" : "hasExactSynonym", "val" : "set of lymphatic vessels of head" }, { "pred" : "hasRelatedSynonym", "val" : "cranial lymph vessels" }, { "pred" : "hasRelatedSynonym", "val" : "set of cranial lymphatic vessels" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011585", "lbl" : "cell condensation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical structure that is an aggregation of similar cells from which cartilages and bones form, and from which chondrogenesis and osteogenesis are initiated during repair and/or regeneration. (Hall and Miyake 1995)." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011595", "lbl" : "jaw region", "type" : "CLASS", "meta" : { "definition" : { "val" : "A subdivision of the head that corresponds to the jaw skeleton, containing both soft tissue, skeleton and teeth (when present). The jaw region is divided into upper and lower regions." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011642", "lbl" : "oral epithelium from ectoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that develops_from a ectoderm and is part of a oral epithelium." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011676", "lbl" : "subdivision of organism along main body axis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A major subdivision of an organism that divides an organism along its main body axis (typically anterio-posterior axis). In vertebrates, this is based on the vertebral column." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "axial subdivision of organism" }, { "pred" : "hasRelatedSynonym", "val" : "body segment" }, { "pred" : "hasRelatedSynonym", "val" : "main body segment" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011695", "lbl" : "embryonic cardiovascular system", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cardiovascular system that is part of a conceptus." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "conceptus cardiovascular system" }, { "pred" : "hasRelatedSynonym", "val" : "embryonic circulatory system" }, { "pred" : "hasRelatedSynonym", "val" : "fetal circulatory system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011779", "lbl" : "nerve of head region", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nerve that is part of a head." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cephalic nerve" }, { "pred" : "hasRelatedSynonym", "val" : "head nerve" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011814", "lbl" : "non-neurogenic ectodermal placode", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ectodermal placode that does not develop into a component of the nervous system." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011821", "lbl" : "irregular connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Connective tissue, which consists of a population of connective tissue cells, the intercellular matrix of which contains an irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, mucoid tissue, connective tissue of peritoneum, connective tissue of fibrous pericardium." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011822", "lbl" : "dense irregular connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Irregular connective tissue is an irregular connective tissue, the intercellular matrix of which contains a dense irregular network of collagen and elastic fiber bundles. Examples: connective tissue of peritoneum, connective tissue of fibrous pericardium." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "irregular dense connective tissue" }, { "pred" : "hasExactSynonym", "val" : "typus irregularis (textus connectivus collagenosus compactus)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011823", "lbl" : "dense connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Dense connective tissue is mainly composed of collagen type I. Crowded between the collagen fibers are rows of fibroblasts, fiber-forming cells, that manufacture the fibers. Dense connective tissue forms strong, rope-like structures such as tendons and ligaments. Tendons attach skeletal muscles to bones; ligaments connect bones to bones at joints. Ligaments are more stretchy and contain more elastic fibers than tendons. Dense connective tissue also make up the lower layers of the skin (dermis), where it is arranged in sheets." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011825", "lbl" : "loose connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "Irregular connective tissue, the intercellular matrix of which contains a sparse irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, neuroglial tissue, mucoid tissue." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "textus connectivus collagenosus laxus" }, { "pred" : "hasExactSynonym", "val" : "textus connectivus laxus" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011860", "lbl" : "collection of collagen fibrils", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011863", "lbl" : "bone collagen fibril", "type" : "CLASS", "meta" : { "definition" : { "val" : "The connective tissue bundles in the extracellular matrix of bone tissue that are composed of collagen, and play a role in tissue strength and elasticity." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0011892", "lbl" : "anterior uvea", "type" : "CLASS", "meta" : { "definition" : { "val" : "Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Haller tunica vascula" }, { "pred" : "hasExactSynonym", "val" : "anterior part of uveal tract" }, { "pred" : "hasExactSynonym", "val" : "anterior uveal tract" }, { "pred" : "hasExactSynonym", "val" : "anterior vascular layer of the eyeball" }, { "pred" : "hasExactSynonym", "val" : "anterior vascular tunic of the eye" }, { "pred" : "hasExactSynonym", "val" : "tunica vasculosa bulbosa" }, { "pred" : "hasExactSynonym", "val" : "ventral uveal tract" }, { "pred" : "hasRelatedSynonym", "val" : "ciliary body and iris" }, { "pred" : "hasRelatedSynonym", "val" : "vasculosa oculi" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012112", "lbl" : "ingested food", "type" : "CLASS", "meta" : { "definition" : { "val" : "A substance that is consumed by the organism for food." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012180", "lbl" : "head or neck skin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone of skin that is part of a craniocervical region." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012274", "lbl" : "columnar epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that consists of columnar epithelial cells. Columnar epithelia are epithelial cells whose heights are at least four times their width. Columnar epithelia are divided into simple (or unilayered), and the rarer stratified (or multi-layered).[WP, modified]." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012275", "lbl" : "meso-epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelium that derives from the mesoderm. [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesoderm-derived epithelium" }, { "pred" : "hasExactSynonym", "val" : "mesoepithelium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012314", "lbl" : "embryonic facial prominence", "type" : "CLASS", "meta" : { "definition" : { "val" : "One of five swellings formed during the development of the face." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "embryonic facial process" }, { "pred" : "hasRelatedSynonym", "val" : "facial primordium" }, { "pred" : "hasRelatedSynonym", "val" : "primordium of face" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012360", "lbl" : "bone of jaw", "type" : "CLASS", "meta" : { "definition" : { "val" : "A bone element that is part of a jaw region." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "jaw bone" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012361", "lbl" : "internal anal region", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012464", "lbl" : "cloacal vent", "type" : "CLASS", "meta" : { "definition" : { "val" : "The opening of the cloacal chamber to the outside of the organism. Birds maintain a single cloacal opening throughout their lives." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cloacal opening" }, { "pred" : "hasRelatedSynonym", "val" : "cloacal orifice" }, { "pred" : "hasRelatedSynonym", "val" : "vent" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012466", "lbl" : "extraembryonic cavity", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "extraembryonic cavities" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012475", "lbl" : "skeleton of pectoral complex", "type" : "CLASS", "meta" : { "definition" : { "val" : "The collection of all skeletal elements in a pectoral complex - i.e. the combination of free limb or fin plus pectoral girdle." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "bones of upper limb" }, { "pred" : "hasRelatedSynonym", "val" : "ossa membri superioris" }, { "pred" : "hasRelatedSynonym", "val" : "pectoral complex skeleton" }, { "pred" : "hasRelatedSynonym", "val" : "set of bones of upper limb" }, { "pred" : "hasRelatedSynonym", "val" : "skeleton of anterior limb/fin and girdle" }, { "pred" : "hasRelatedSynonym", "val" : "upper limb skeleton" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012480", "lbl" : "cloacal mucosa", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mucosa that is part of a cloaca [Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cloaca mucosa" }, { "pred" : "hasExactSynonym", "val" : "cloaca mucosa of organ" }, { "pred" : "hasExactSynonym", "val" : "cloaca mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "cloaca organ mucosa" }, { "pred" : "hasExactSynonym", "val" : "cloacal mucous membrane" }, { "pred" : "hasExactSynonym", "val" : "mucosa of cloaca" }, { "pred" : "hasExactSynonym", "val" : "mucosa of organ of cloaca" }, { "pred" : "hasExactSynonym", "val" : "mucous membrane of cloaca" }, { "pred" : "hasExactSynonym", "val" : "organ mucosa of cloaca" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0012481", "lbl" : "cloacal epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a cloaca." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cloacal endoderm" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013150", "lbl" : "future brain vesicle", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "early brain vesicle" }, { "pred" : "hasExactSynonym", "val" : "primitive brain vesicle" }, { "pred" : "hasNarrowSynonym", "val" : "primary brain vesicle" }, { "pred" : "hasNarrowSynonym", "val" : "secondary brain vesicle" }, { "pred" : "hasRelatedSynonym", "val" : "brain vesicle" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013522", "lbl" : "subdivision of tube", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013685", "lbl" : "foramen of skull", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical space that is an opening in a bone of the skull." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "foramen of skull" }, { "pred" : "hasNarrowSynonym", "val" : "cranial conduit" }, { "pred" : "hasNarrowSynonym", "val" : "cranial foramen" }, { "pred" : "hasRelatedSynonym", "val" : "foramina of the skull" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013686", "lbl" : "anatomical conduit space", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical space which is the lumen of some anatomical conduit and connects two or more spaces together[FMA,modified]." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "foramen space" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013701", "lbl" : "main body axis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A principle subdivision of an organism that includes all structures along the primary axis, typically the anterior-posterior axis, from head to tail, including structures of the body proper where present (for example, ribs), but excluding appendages." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013702", "lbl" : "body proper", "type" : "CLASS", "meta" : { "definition" : { "val" : "The region of the organism associated with the visceral organs." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "body" }, { "pred" : "hasRelatedSynonym", "val" : "whole body" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013703", "lbl" : "integumentary projection", "type" : "CLASS", "meta" : { "definition" : { "val" : "Anatomical projection that is part of the integumentl system." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "skin projection" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013754", "lbl" : "integumentary system layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organ component layer that is part of a integumental system." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "layer of skin" }, { "pred" : "hasNarrowSynonym", "val" : "skin layer" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0013765", "lbl" : "digestive system element", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any of the organs or elements that are part of the digestive system. Examples: tongue, esophagus, spleen, crop, lunge feeding organ, tooth elements." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "digestive organ" }, { "pred" : "hasExactSynonym", "val" : "digestive system organ" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0014371", "lbl" : "future telencephalon", "type" : "CLASS", "meta" : { "definition" : { "val" : "Embryonic structure that gives rise to the telencephalon." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "presumptive telencephalon" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0014387", "lbl" : "mesenchyme derived from neural crest", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that develops_from the neural crest[Automatically generated definition]." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchyme from neural crest" }, { "pred" : "hasExactSynonym", "val" : "neural crest derived mesenchyme" }, { "pred" : "hasExactSynonym", "val" : "neural crest mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0014477", "lbl" : "thoracic skeleton", "type" : "CLASS", "meta" : { "definition" : { "val" : "Subdivision of skeletal system that consists of all skeletal elements in the thoracic region of the trunk. In most vertebrates this is the rib cage and sternum." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "skeleton of thorax" }, { "pred" : "hasExactSynonym", "val" : "thoracic part of axial skeleton" }, { "pred" : "hasExactSynonym", "val" : "thoracic skeleton" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0014703", "lbl" : "anal membrane ectodermal component", "type" : "CLASS", "meta" : { "definition" : { "val" : "A unilaminar epithelium that develops_from a ectoderm and is part of a anal region." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0014775", "lbl" : "prosomere", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuromere that is part of the presumptive forebrain." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "forebrain segment" }, { "pred" : "hasBroadSynonym", "val" : "segment of forebrain" }, { "pred" : "hasExactSynonym", "val" : "forebrain neuromere" }, { "pred" : "hasRelatedSynonym", "val" : "future prosencephalon" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0014783", "lbl" : "cloacal muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any muscle organ that is part of a cloaca." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0014793", "lbl" : "musculature of pectoral complex", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any collection of muscles that is part of a pectoral complex. The pectoral complex comprises the pectoral girdle and the associated limb or fin." }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "muscles of upper limb" }, { "pred" : "hasNarrowSynonym", "val" : "musculature of upper limb" }, { "pred" : "hasNarrowSynonym", "val" : "musculi membri superioris" }, { "pred" : "hasNarrowSynonym", "val" : "set of muscles of upper limb" }, { "pred" : "hasNarrowSynonym", "val" : "upper limb musculature" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0014903", "lbl" : "primordial vasculature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A portion of tissue that will develop into vasculature." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015203", "lbl" : "non-connected functional system", "type" : "CLASS", "meta" : { "definition" : { "val" : "An anatomical group whose component structures share a common function." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015212", "lbl" : "lateral structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any structure that is placed on one side of the left-right axis of a bilaterian." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015228", "lbl" : "circulatory organ", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hollow, muscular organ, which, by contracting rhythmically, contributes to the circulation of lymph, blood or analogs. Examples: a chambered vertebrate heart; the tubular peristaltic heart of ascidians; the dorsal vessel of an insect; the lymoh heart of a reptile." }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "heart" }, { "pred" : "hasExactSynonym", "val" : "cardiac pump" }, { "pred" : "hasExactSynonym", "val" : "heart or heart like organ" }, { "pred" : "hasNarrowSynonym", "val" : "circulatory vessel" }, { "pred" : "hasRelatedSynonym", "val" : "cardiac structure" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015329", "lbl" : "respiratory system basement membrane", "type" : "CLASS", "meta" : { "definition" : { "val" : "A basement membrane of epithelium that is part of a respiratory system." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015410", "lbl" : "heart plus pericardium", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "heart/pericardium" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015474", "lbl" : "axilla skin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zone of skin that is part of a axilla." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "axillary skin" }, { "pred" : "hasExactSynonym", "val" : "skin of axilla" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015783", "lbl" : "smooth muscle layer in fatty layer of subcutaneous tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A smooth muscle tissue that is part of a hypodermis." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscle layer in fatty layer of subcutaneous tissue" }, { "pred" : "hasExactSynonym", "val" : "stratum musculosum panniculi adiposi telae subcutaneae" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015808", "lbl" : "eye epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a camera-type eye." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0015833", "lbl" : "foregut epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelium that is part of a foregut." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0016879", "lbl" : "future central nervous system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Primordium that develops into the central nervous system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "future CNS" }, { "pred" : "hasExactSynonym", "val" : "presumptive central nervous system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0016880", "lbl" : "future nervous system", "type" : "CLASS", "meta" : { "definition" : { "val" : "Primordium that develops into the nervous system." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "presumptive nervous system" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0016887", "lbl" : "entire extraembryonic component", "type" : "CLASS", "meta" : { "definition" : { "val" : "The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "extra-embryonic component" }, { "pred" : "hasExactSynonym", "val" : "extraembryonic component" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0016888", "lbl" : "transitional anatomical structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An embryonic anatomical entity that will turn into one or more other anatomical entities, perhaps with other anatomical entities, later in development." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0017650", "lbl" : "developing mesenchymal structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesenchyme-derived anatomical entity undergoing a transtion to become another structure." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0018674", "lbl" : "heart vasculature", "type" : "CLASS", "meta" : { "definition" : { "val" : "An interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cardiac vasculature" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0019042", "lbl" : "reproductive system mucosa", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "genital mucosa" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0019204", "lbl" : "skin epithelium", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any region of epithelium that is part of a skin region." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0019207", "lbl" : "chorioretinal region", "type" : "CLASS", "meta" : { "definition" : { "val" : "The part of the eye that consists of both the retina and the optic choroid." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chorioretina" }, { "pred" : "hasExactSynonym", "val" : "choroid and retina" }, { "pred" : "hasExactSynonym", "val" : "retinachoroid" }, { "pred" : "hasExactSynonym", "val" : "retinachoroidal region" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0019264", "lbl" : "gray matter of forebrain", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0019269", "lbl" : "gray matter of diencephalon", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0019304", "lbl" : "sensory organ epithelium", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0034768", "lbl" : "morphological feature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A part of an organism or organ that is continuous with its surroundings and distinguished from its surroundings based on morphology." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0034878", "lbl" : "prechordal mesoderm", "type" : "CLASS", "meta" : { "definition" : { "val" : "The area of axial mesoderm that develops into the prechordal plate." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "prechordal mesenchyme" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0034921", "lbl" : "multi organ part structure", "type" : "CLASS", "meta" : { "definition" : { "val" : "An multicellular anatomical structure that has subparts of multiple organs as a part." }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "anatomical cluster" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0034923", "lbl" : "disconnected anatomical group", "type" : "CLASS", "meta" : { "definition" : { "val" : "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0034925", "lbl" : "anatomical collection", "type" : "CLASS", "meta" : { "definition" : { "val" : "A collection of anatomical structures that are alike in terms of their morphology or developmental origin." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0034929", "lbl" : "external soft tissue zone", "type" : "CLASS", "meta" : { "definition" : { "val" : "A region or zone on the surface of an organism that encompasses skin and any adnexa, down through muscles and bounded by underlying skeletal support structures." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0034944", "lbl" : "zone of organ", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "organ sector" }, { "pred" : "hasExactSynonym", "val" : "organ zonal region" }, { "pred" : "hasExactSynonym", "val" : "organ zone" }, { "pred" : "hasRelatedSynonym", "val" : "organ region with floating fiat boundary" } ] } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0034995", "lbl" : "jaw mesenchyme", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mesenchyme that is part of a developing jaw [Automatically generated definition]." } } }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0035037", "lbl" : "jaw epithelium", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0035804", "lbl" : "future mouth", "type" : "CLASS", "meta" 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