whole plant
type: Class
subclass of: plant structure
IAO_0000115: A plant structure (PO:0005679) which is a whole organism.
has broad synonym: genet (broad)
has broad synonym: ramet (broad)
has db xref: PO_GIT:538
has db xref: PO_GIT:69
has exact synonym: planta entera (Spanish, exact)
has exact synonym: 植物体全体 (Japanese, exact)
has narrow synonym: bush (narrow)
has narrow synonym: frutex (narrow)
has narrow synonym: frutices (narrow)
has narrow synonym: gametophyte (narrow)
has narrow synonym: herb (narrow)
has narrow synonym: liana (narrow)
has narrow synonym: prothalli (narrow)
has narrow synonym: prothallium (narrow)
has narrow synonym: prothallus (narrow)
has narrow synonym: seedling (narrow)
has narrow synonym: shrub (narrow)
has narrow synonym: sporophyte (narrow)
has narrow synonym: suffrutex (narrow)
has narrow synonym: suffrutices (narrow)
has narrow synonym: tree (narrow)
has narrow synonym: vine (narrow)
has narrow synonym: woody clump (narrow)
has OBO namespace: plant_anatomy
has related synonym: clonal colony (related)
has related synonym: colony (related)
id: PO:0000003
in subset: TraitNet
in subset: reference
comment: Examples include plant embryo (PO:0009009), megagametophyte (PO:0025279) and microgametophyte (PO:0025280).

Axiom
annotated source: whole plant
annotated property: IAO_0000115
annotated target: A plant structure (PO:0005679) which is a whole organism.
has db xref: POC:curators

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: woody clump (narrow)

Axiom
annotated source: whole plant
annotated property: hasExactSynonym
annotated target: planta entera (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: whole plant
annotated property: hasExactSynonym
annotated target: 植物体全体 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: frutex (narrow)

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: frutices (narrow)
has synonym type: Plural

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: prothalli (narrow)
has synonym type: Plural

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: prothallus (narrow)

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: suffrutex (narrow)

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: suffrutices (narrow)
has synonym type: Plural

plant cuticle
type: Class
subclass of: portion of plant substance
subclass of: Restriction
  on property: RO_0002220
  some values from: epidermis
IAO_0000115: A portion of plant substance (PO:0025161) composed of cutin (PO:0025385), a polyester matrix of hydroxy- and hydroxy epoxy fatty acids C16 and C18 chains, embedded and overlayed with cuticular wax (PO:0025386) and forming a layer on the surface of a plant epidermis (PO:0005679).
has broad synonym: cuticle (broad)
has db xref: PO_GIT:416
has exact synonym: cut&#237cula (Spanish, exact)
has exact synonym: 植物クチクラ (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0000022
comment: The plant cuticle is produced in and secreted by epidermal cells (PO:0004013) of leaves (PO:0025034), stems (PO:0009047), fruits (PO:0009001), and other aerial plant structures. It has as parts an inner cuticle proper (PO:0025387) and an outer layer of epicuticular wax (PO:0025388).

Axiom
annotated source: plant cuticle
annotated property: IAO_0000115
annotated target: A portion of plant substance (PO:0025161) composed of cutin (PO:0025385), a polyester matrix of hydroxy- and hydroxy epoxy fatty acids C16 and C18 chains, embedded and overlayed with cuticular wax (PO:0025386) and forming a layer on the surface of a plant epidermis (PO:0005679).
has db xref: ISBN:0471245208
has db xref: POC:Laurel_Cooper

Axiom
annotated source: plant cuticle
annotated property: hasExactSynonym
annotated target: cut&#237cula (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant cuticle
annotated property: hasExactSynonym
annotated target: 植物クチクラ (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

shoot axis apex
type: Class
subclass of: shoot axis
IAO_0000115: A shoot axis (PO:0025029) that is the most distal part of a shoot system (PO:0009006) and has as parts a shoot apical meristem (PO:0020148) and the youngest primordia (PO:0025127).
has db xref: PO_GIT:234
has exact synonym: &#225pice del epiblasto (epiblastema) (Spanish, exact)
has exact synonym: シュート頂、茎頂 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0000037
in subset: reference

Axiom
annotated source: shoot axis apex
annotated property: IAO_0000115
annotated target: A shoot axis (PO:0025029) that is the most distal part of a shoot system (PO:0009006) and has as parts a shoot apical meristem (PO:0020148) and the youngest primordia (PO:0025127).
has db xref: POC:curators

Axiom
annotated source: shoot axis apex
annotated property: hasExactSynonym
annotated target: &#225pice del epiblasto (epiblastema) (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: shoot axis apex
annotated property: hasExactSynonym
annotated target: シュート頂、茎頂 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

shoot axis epidermis
type: Class
equivalent class: Class
  intersection of: shoot system epidermis
  intersection of: Restriction
    on property: BFO_0000050
    some values from: shoot axis
subclass of: shoot system epidermis
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot axis
IAO_0000115: A portion of shoot system epidermis (PO:0006035) that is part of a shoot axis (PO:0025029).
has exact synonym: epidermis del eje del tallo (Spanish, exact)
has exact synonym: シュート軸表皮 (Japanese, exact)
has narrow synonym: branch epidermis (narrow)
has OBO namespace: plant_anatomy
id: PO:0000112
comment: Can occur on a stem or branch.

Axiom
annotated source: shoot axis epidermis
annotated property: IAO_0000115
annotated target: A portion of shoot system epidermis (PO:0006035) that is part of a shoot axis (PO:0025029).
has db xref: POC:Laurel_Cooper
has db xref: POC:curators

Axiom
annotated source: shoot axis epidermis
annotated property: hasExactSynonym
annotated target: epidermis del eje del tallo (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: shoot axis epidermis
annotated property: hasExactSynonym
annotated target: シュート軸表皮 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

peripheral zone
type: Class
subclass of: portion of meristem tissue
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot apical meristem
IAO_0000115: A portion of meristem tissue (PO:0009013) which is the organogenic region of the meristem, characterized by higher rates of cell division.
has exact synonym: zona perif&#233rica (Spanish, exact)
has exact synonym: 周辺帯 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: peripheral meristem (related)
id: PO:0000225

Axiom
annotated source: peripheral zone
annotated property: IAO_0000115
annotated target: A portion of meristem tissue (PO:0009013) which is the organogenic region of the meristem, characterized by higher rates of cell division.
has db xref: ISBN:0521288959
has db xref: TAIR_curator:Leonore_Reiser

Axiom
annotated source: peripheral zone
annotated property: hasExactSynonym
annotated target: zona perif&#233rica (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: peripheral zone
annotated property: hasExactSynonym
annotated target: 周辺帯 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

meristematic cell
type: Class
subclass of: native plant cell
IAO_0000115: A native plant cell (PO:0025606) synthesizing protoplasm and producing new cells by division and with only a primary cell wall.
has db xref: CL:0000034
has db xref: PO_GIT:272
has exact synonym: c&#233lula meristem&#225tica (Spanish, exact)
has exact synonym: stem cell (exact)
has exact synonym: 分裂組織細胞 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0004010
in subset: CL

Axiom
annotated source: meristematic cell
annotated property: IAO_0000115
annotated target: A native plant cell (PO:0025606) synthesizing protoplasm and producing new cells by division and with only a primary cell wall.
has db xref: ISBN:0471245208
has db xref: POC:Laurel_Cooper

Axiom
annotated source: meristematic cell
annotated property: hasExactSynonym
annotated target: c&#233lula meristem&#225tica (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: meristematic cell
annotated property: hasExactSynonym
annotated target: 分裂組織細胞 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

root primordium
type: Class
subclass of: primordium
subclass of: Restriction
  on property: RO_0002202
  some values from: root anlagen
IAO_0000115: A primordium (PO:0025127) that develops from a root anlagen (PO:0025433) and is committed to the development of a root (PO:0009005).
has db xref: PO_GIT:467
has exact synonym: portion of root primordium tissue (exact)
has exact synonym: primordio de ra&#237z (Spanish, exact)
has exact synonym: root primordia (exact, plural)
has exact synonym: 根原基（可視的） (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0005029
comment: A root primordium may arise from cells of a pericycle (PO:0006203) in a root in most seed plant (pericyclic lateral root primordium; PO:0025492), from cells of an endodermis (PO:0000252) in ferns and some seed plants (non-pericyclic lateral root primordium: PO:0025493), or from cells of a shoot axis (PO:0025029), in the case of a basal root primordium (PO:0025479) or shoot-borne root primordium (PO:0025480). Transition from root primordium to root occurs with the formation of a root cap (PO:0020123), shortly after the development of a root apical meristem (PO:0020147).

Axiom
annotated source: root primordium
annotated property: IAO_0000115
annotated target: A primordium (PO:0025127) that develops from a root anlagen (PO:0025433) and is committed to the development of a root (PO:0009005).
has db xref: ISBN:0521288959
has db xref: POC:curators

Axiom
annotated source: root primordium
annotated property: hasExactSynonym
annotated target: primordio de ra&#237z (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: root primordium
annotated property: hasExactSynonym
annotated target: 根原基（可視的） (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

epidermis
type: Class
subclass of: portion of plant tissue
subclass of: Restriction
  on property: RO_0002202
  some values from: protoderm
IAO_0000115: A portion of plant tissue (PO:0009007) composed of epidermal cells (PO:0004013) that develops from the protoderm (PO:0006210) and covers the surface of a plant structure (PO:0009011).
has db xref: PO_GIT:109
has exact synonym: dermal tissue (exact)
has exact synonym: epidermal layer (exact)
has exact synonym: epidermides (exact, plural)
has exact synonym: epidermis (Spanish, exact)
has exact synonym: epidermises (exact, plural)
has exact synonym: portion of epidermal tissue (exact)
has exact synonym: 表皮 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: multiseriate epidermis (related)
id: PO:0005679
in subset: TraitNet
comment: The epidermis can be composed of one or more layers of cells. In some species of vascular plants, the epidermis, which is a primary tissue, is replaced by periderm, which is secondary tissue, later in development. The epidermis can also include trichomes, stomatal pores, root hairs, and rhizoids.

Axiom
annotated source: epidermis
annotated property: IAO_0000115
annotated target: A portion of plant tissue (PO:0009007) composed of epidermal cells (PO:0004013) that develops from the protoderm (PO:0006210) and covers the surface of a plant structure (PO:0009011).
has db xref: POC:curators

Axiom
annotated source: epidermis
annotated property: hasExactSynonym
annotated target: epidermides (exact, plural)

Axiom
annotated source: epidermis
annotated property: hasExactSynonym
annotated target: epidermis (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: epidermis
annotated property: hasExactSynonym
annotated target: epidermises (exact, plural)

Axiom
annotated source: epidermis
annotated property: hasExactSynonym
annotated target: 表皮 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

phyllome
type: Class
subclass of: plant organ
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot system
subclass of: Restriction
  on property: RO_0002202
  some values from: phyllome primordium
IAO_0000115: A lateral plant organ (PO:0009008) produced by a shoot apical meristem (PO:0020148).
has exact synonym: filoma (Spanish, exact)
has exact synonym: フィロム、葉(的）器官 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0006001
in subset: TraitNet
in subset: reference

Axiom
annotated source: phyllome
annotated property: IAO_0000115
annotated target: A lateral plant organ (PO:0009008) produced by a shoot apical meristem (PO:0020148).
has db xref: POC:curators

Axiom
annotated source: phyllome
annotated property: hasExactSynonym
annotated target: filoma (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: phyllome
annotated property: hasExactSynonym
annotated target: フィロム、葉(的）器官 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

leaf epidermis
type: Class
equivalent class: Class
  intersection of: phyllome epidermis
  intersection of: Restriction
    on property: BFO_0000050
    some values from: leaf
subclass of: phyllome epidermis
subclass of: Restriction
  on property: BFO_0000050
  some values from: leaf
IAO_0000115: A portion of phyllome epidermis (PO:0025157) that is part of a leaf (PO:0025034).
has exact synonym: epidermis de la hoja (Spanish, exact)
has exact synonym: foliage leaf epidermis (exact)
has exact synonym: phyllid epidermis (exact)
has exact synonym: 葉表皮 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0006016
comment: If you are annotating to this term, please add an additional annotation to vascular leaf (PO:0009025) or non-vascular leaf (PO:0025075), depending on the species. All annotations for angiosperms, gymnosperms, and pteridophytes should go to vascular leaf and all annotations for bryophytes should go to non-vascular leaf.

Axiom
annotated source: leaf epidermis
annotated property: IAO_0000115
annotated target: A portion of phyllome epidermis (PO:0025157) that is part of a leaf (PO:0025034).
has db xref: POC:curators

Axiom
annotated source: leaf epidermis
annotated property: hasExactSynonym
annotated target: epidermis de la hoja (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: leaf epidermis
annotated property: hasExactSynonym
annotated target: 葉表皮 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

shoot system epidermis
type: Class
equivalent class: Class
  intersection of: epidermis
  intersection of: Restriction
    on property: BFO_0000050
    some values from: shoot system
subclass of: epidermis
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot system
subclass of: Restriction
  on property: RO_0002202
  some values from: meristem L1 layer
IAO_0000115: A portion of epidermis (PO:0005679) that is part of a shoot system (PO:0009006) and arises from the meristem L1 layer (PO:0009020).
has db xref: PO_GIT:111
has exact synonym: epidermis del epiblasto (epiblastema) (Spanish, exact)
has exact synonym: シュート表皮 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0006035
comment: Often interrupted by stomatal complexes (PO:0002000) and other structures. The shoot system epidermis is different from the root epidermis (PO:0006036) in its origin, function and structure.

Axiom
annotated source: shoot system epidermis
annotated property: IAO_0000115
annotated target: A portion of epidermis (PO:0005679) that is part of a shoot system (PO:0009006) and arises from the meristem L1 layer (PO:0009020).
has db xref: ISBN:0471245208
has db xref: POC:Laurel_Cooper
has db xref: POC:curators

Axiom
annotated source: shoot system epidermis
annotated property: hasExactSynonym
annotated target: epidermis del epiblasto (epiblastema) (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: shoot system epidermis
annotated property: hasExactSynonym
annotated target: シュート表皮 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

root epidermis
type: Class
equivalent class: Class
  intersection of: epidermis
  intersection of: Restriction
    on property: BFO_0000050
    some values from: root
subclass of: epidermis
subclass of: Restriction
  on property: BFO_0000050
  some values from: root
IAO_0000115: A portion of epidermis (PO:0005679) that is part of a root (PO:0009005).
has alternative id: PO:0006037
has db xref: PO_GIT:111
has exact synonym: epidermis de la ra&#237z (Spanish, exact)
has exact synonym: 根表皮 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: epiblem (related)
has related synonym: rhizodermis (related)
id: PO:0006036
comment: The root epidermis is different from the shoot epidermis in its origin, function and structure.

Axiom
annotated source: root epidermis
annotated property: IAO_0000115
annotated target: A portion of epidermis (PO:0005679) that is part of a root (PO:0009005).
has db xref: ISBN:0080374913

Axiom
annotated source: root epidermis
annotated property: hasExactSynonym
annotated target: epidermis de la ra&#237z (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: root epidermis
annotated property: hasExactSynonym
annotated target: 根表皮 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

shoot system meristem
type: Class
subclass of: portion of meristem tissue
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot system
IAO_0000115: A portion of meristem tissue (PO:0009013) that is part of a shoot system (PO:0009006).
has db xref: PO_GIT:472
has db xref: PO_GIT:583
has exact synonym: meristema del epiblasto (epiblastema) (Spanish, exact)
has exact synonym: シュート分裂組織 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0006079
in subset: TraitNet

Axiom
annotated source: shoot system meristem
annotated property: IAO_0000115
annotated target: A portion of meristem tissue (PO:0009013) that is part of a shoot system (PO:0009006).
has db xref: Gramene:Pankaj_Jaiswal
has db xref: POC:Laurel_Cooper

Axiom
annotated source: shoot system meristem
annotated property: hasExactSynonym
annotated target: meristema del epiblasto (epiblastema) (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: shoot system meristem
annotated property: hasExactSynonym
annotated target: シュート分裂組織 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

protoderm
type: Class
subclass of: portion of meristem tissue
IAO_0000115: A portion of meristem tissue (PO:0009013) that is the outer layer of an apical meristem (PO:0020144), or the outer layer of a plant embryo proper (PO:0000001), and gives rise to a portion of epidermis (PO:0005679).
has db xref: PO_GIT:125
has exact synonym: portion of protoderm tissue (exact)
has exact synonym: protodermis (Spanish, exact)
has exact synonym: 前表皮、原表皮 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: dermatogen cell (related)
id: PO:0006210
comment: A protoderm may or may not arise from independent initial cells (PO:0004011). Some researchers also refer to it as an epidermis in a meristematic state.

Axiom
annotated source: protoderm
annotated property: IAO_0000115
annotated target: A portion of meristem tissue (PO:0009013) that is the outer layer of an apical meristem (PO:0020144), or the outer layer of a plant embryo proper (PO:0000001), and gives rise to a portion of epidermis (PO:0005679).
has db xref: ISBN:0471245208
has db xref: POC:Laurel_Cooper

Axiom
annotated source: protoderm
annotated property: hasExactSynonym
annotated target: protodermis (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: protoderm
annotated property: hasExactSynonym
annotated target: 前表皮、原表皮 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

whole plant development stage
type: Class
subclass of: plant structure development stage
subclass of: Restriction
  on property: RO_0000057
  some values from: whole plant
IAO_0000115: A plant structure development stage (PO:0009012) that has as primary participant a whole plant (PO:0000003).
has db xref: PO_GIT:390
has OBO namespace: plant_structure_development_stage
has related synonym: Solanaceae whole plant growth stages (SGN:0000001) (related)
has related synonym: cereal plant growth stage ontology (GRO:0007199) (related)
has related synonym: maize growth stage (GRO:0007002) (related)
has related synonym: plant growth stages in Arabidopsis (TAIR:0000021) (related)
has related synonym: rice growth stage (GRO:0007040) (related)
has related synonym: sorghum growth stage (GRO:0007124) (related)
has related synonym: wheat, barley and oat growth stage (GRO:0007156) (related)
id: PO:0007033
in subset: TraitNet

Axiom
annotated source: whole plant development stage
annotated property: IAO_0000115
annotated target: A plant structure development stage (PO:0009012) that has as primary participant a whole plant (PO:0000003).
has db xref: POC:curators

plant cell
type: Class
subclass of: plant structure
disjoint with: portion of plant tissue
disjoint with: plant organ
disjoint with: collective plant organ structure
IAO_0000115: A cell which is a plant structure (PO:0009011).
has broad synonym: cell (broad)
has db xref: GO:0005623
has db xref: PO_GIT:56
has exact synonym: c&#233lula vegetal (Spanish, exact)
has exact synonym: 植物細胞 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0009002
in subset: CL
in subset: TraitNet
in subset: reference
comment: Applies to cells that are living or dead at maturity (e.g., fiber cell or tracheid) and includes any external encapsulating structures (if present) such as the plasma membrane and the plant-type cell wall. Definition of cell GO:0005623: "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope". GO:0009505. Definition of plant-type cell wall (GO:0009505): A more or less rigid structure lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances, synonym; exact: cellulose and pectin-containing cell wall.

Axiom
annotated source: plant cell
annotated property: IAO_0000115
annotated target: A cell which is a plant structure (PO:0009011).
has db xref: GO:0005623
has db xref: POC:curators

Axiom
annotated source: plant cell
annotated property: hasExactSynonym
annotated target: c&#233lula vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant cell
annotated property: hasExactSynonym
annotated target: 植物細胞 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

root
type: Class
subclass of: plant axis
subclass of: Restriction
  on property: BFO_0000050
  some values from: root system
subclass of: Restriction
  on property: RO_0002202
  some values from: root primordium
IAO_0000115: A plant axis (PO:0025004) that lacks shoot axis nodes (PO:0005004) and usually grows indeterminately.
has alternative id: PO:0003006
has db xref: PO_GIT:578
has exact synonym: ra&#237z (Spanish, exact)
has exact synonym: radices (exact, plural)
has exact synonym: radix (exact)
has exact synonym: 根 (Japanese, exact)
has narrow synonym: aerial root (narrow)
has narrow synonym: climbing root (narrow)
has OBO namespace: plant_anatomy
id: PO:0009005
in subset: Angiosperm
in subset: Gymnosperms
in subset: Maize
in subset: Musa
in subset: Potato
in subset: Rice
in subset: Tomato
in subset: TraitNet
in subset: reference
comment: Roots function in the absorption of water and inorganic nutrients, anchoring the plant body to the substrate and supporting it, storage of food and nutrients, and vegetative reproduction. The roots of most vascular plant species enter into symbiosis with soil-borne microorganisms. Roots are usually positively geotropic and found underground, although there are many exceptions such as the aerial roots of orchids. Roots often form secondary thickening from the root lateral meristem (PO:0006308). Commonly thought of as one of the three basic parts of the plant body, along with the shoot axis (PO:0025029) and leaves (PO:0025034).

Axiom
annotated source: root
annotated property: IAO_0000115
annotated target: A plant axis (PO:0025004) that lacks shoot axis nodes (PO:0005004) and usually grows indeterminately.
has db xref: ISBN:978-0879015329
has db xref: ISBN:9780964022157
has db xref: NYBG:Brandon_Sinn
has db xref: NYBG:Dario_Cavaliere
has db xref: POC:Laurel_Cooper
has db xref: POC:curators

Axiom
annotated source: root
annotated property: hasExactSynonym
annotated target: ra&#237z (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: root
annotated property: hasExactSynonym
annotated target: radices (exact, plural)

Axiom
annotated source: root
annotated property: hasExactSynonym
annotated target: radix (exact)

Axiom
annotated source: root
annotated property: hasExactSynonym
annotated target: 根 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: root
annotated property: hasNarrowSynonym
annotated target: climbing root (narrow)

shoot system
type: Class
subclass of: collective plant organ structure
disjoint with: root system
IAO_0000115: A collective plant organ structure (PO:0025007) that produces shoot-borne portions of meristem tissue (PO:0009013) and the plant structures (PO:0009011) that arise from them.
has db xref: PO_GIT:135
has exact synonym: sistema de epiblasto (epiblastema) (Spanish, exact)
has exact synonym: シュート系、苗条系 (Japanese, exact)
has narrow synonym: tree crown (narrow)
has OBO namespace: plant_anatomy
has related synonym: Poaceae crown (related)
has related synonym: shoot (related)
has related synonym: thalli (related)
has related synonym: thallus (related)
id: PO:0009006
in subset: TraitNet
in subset: reference
comment: The shoot system is generally used to refer to the above-ground plant parts, although some plants have parts of their shoot system underground. For example, a rhizome (PO:0004542), bulb (PO:0025356), a corm (PO:0025355) or a subterranean tuber (PO:0004547), as in Solanum tuberosum (potato) or yam, are all part of the shoot system.

Axiom
annotated source: shoot system
annotated property: IAO_0000115
annotated target: A collective plant organ structure (PO:0025007) that produces shoot-borne portions of meristem tissue (PO:0009013) and the plant structures (PO:0009011) that arise from them.
has db xref: POC:Laurel_Cooper
has db xref: POC:curators

Axiom
annotated source: shoot system
annotated property: hasExactSynonym
annotated target: sistema de epiblasto (epiblastema) (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: shoot system
annotated property: hasExactSynonym
annotated target: シュート系、苗条系 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: shoot system
annotated property: hasRelatedSynonym
annotated target: thalli (related)
has synonym type: Plural

Axiom
annotated source: shoot system
annotated property: hasRelatedSynonym
annotated target: thallus (related)

portion of plant tissue
type: Class
subclass of: plant structure
disjoint with: plant organ
disjoint with: collective plant organ structure
IAO_0000115: A plant structure (PO:0009011) that consists predominantly of similarly specialized plant cells (PO:0009002) of one or more types.
has broad synonym: portion of tissue (broad)
has broad synonym: tissue (broad)
has db xref: PO_GIT:59
has exact synonym: porci&#243n de un tejido vegetal (Spanish, exact)
has exact synonym: 植物組織の一部 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: plant tissue (related)
id: PO:0009007
in subset: TraitNet
in subset: reference
comment: A portion of plant tissue may contain one or several types of cells that are organized in a specific spatial arrangement into a structural unit (which includes a mass of callus) and may include an intercellular matrix. May include other types of isolated cells, such as idioblasts.

Axiom
annotated source: portion of plant tissue
annotated property: hasExactSynonym
annotated target: 植物組織の一部 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: portion of plant tissue
annotated property: IAO_0000115
annotated target: A plant structure (PO:0009011) that consists predominantly of similarly specialized plant cells (PO:0009002) of one or more types.
has db xref: POC:curators
has db xref: TAIR_curator:Leonore_Reiser

Axiom
annotated source: portion of plant tissue
annotated property: hasExactSynonym
annotated target: porci&#243n de un tejido vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

plant organ
type: Class
subclass of: multi-tissue plant structure
IAO_0000115: A multi-tissue plant structure (PO:0025496) that is a functional unit, is a proper part of a whole plant (PO:0000003), and includes portions of plant tissue (PO:0009007) of at least two different types that derive from a common developmental path.
has broad synonym: organ (broad)
has db xref: PO_GIT:55
has exact synonym: &#243rgano vegetal (Spanish, exact)
has exact synonym: 植物 器官 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: compound plant organ (related)
has related synonym: simple plant organ (related)
id: PO:0009008
in subset: TraitNet
comment: Examples include stem (PO:0009047), leaf (PO:0025034), and root (PO:0009005). May include individual plant cells (PO:0009002) that are not part of a portion of plant tissue (e.g., idioblasts, PO:0000283). A plant organ may have one or more different plant organs as parts, such as a sporophyll (PO:0009026) that may have as part a sporangium (PO:0025094) or a carpel (PO:0009030) that may have as part a plant ovule (PO:0020003).

Axiom
annotated source: plant organ
annotated property: IAO_0000115
annotated target: A multi-tissue plant structure (PO:0025496) that is a functional unit, is a proper part of a whole plant (PO:0000003), and includes portions of plant tissue (PO:0009007) of at least two different types that derive from a common developmental path.
has db xref: POC:curators

Axiom
annotated source: plant organ
annotated property: hasExactSynonym
annotated target: &#243rgano vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant organ
annotated property: hasExactSynonym
annotated target: 植物 器官 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: plant organ
annotated property: hasRelatedSynonym
annotated target: simple plant organ (related)
has db xref: PATO:01503

plant structure
type: Class
subclass of: plant anatomical entity
IAO_0000115: A plant anatomical entity (PO:0025131) that is, or was, part of a plant, or was derived from a part of a plant.
has db xref: PO_GIT:57
has exact synonym: estructura vegetal (Spanish, exact)
has exact synonym: 植物 構造 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0009011
in subset: TraitNet
comment: 'Part' includes both proper parts and the whole plant. CARO:0000003 'connected anatomical structure' is defined as: Material anatomical entity that is a single connected structure with inherent 3D shape, generated by coordinated expression of the organism's own genome.

Axiom
annotated source: plant structure
annotated property: IAO_0000115
annotated target: A plant anatomical entity (PO:0025131) that is, or was, part of a plant, or was derived from a part of a plant.
has db xref: CARO:0000003
has db xref: POC:curators

Axiom
annotated source: plant structure
annotated property: hasExactSynonym
annotated target: estructura vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant structure
annotated property: hasExactSynonym
annotated target: 植物 構造 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: plant structure
annotated property: comment
annotated target: 'Part' includes both proper parts and the whole plant. CARO:0000003 'connected anatomical structure' is defined as: Material anatomical entity that is a single connected structure with inherent 3D shape, generated by coordinated expression of the organism's own genome.
has db xref: PO:cooperl

plant structure development stage
type: Class
subclass of: BFO_0000015
IAO_0000115: A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes.
has alternative id: PO:0007021
has db xref: PO_GIT:185
has exact synonym: etapa de desarrollo de estructura vegetal (Spanish, exact)
has exact synonym: plant growth and development stage (exact)
has OBO namespace: plant_structure_development_stage
has related synonym: Arabidopsis growth (related)
id: PO:0009012
in subset: TraitNet
comment: Refers to GO:0032502 'developmental process', which includes growth, differentiation, and senescence, and BFO:0000003 'ocurrent'.

Axiom
annotated source: plant structure development stage
annotated property: IAO_0000115
annotated target: A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes.
has db xref: BFO:0000003
has db xref: GO:0032502
has db xref: POC:curators

Axiom
annotated source: plant structure development stage
annotated property: hasExactSynonym
annotated target: etapa de desarrollo de estructura vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant structure development stage
annotated property: hasRelatedSynonym
annotated target: Arabidopsis growth (related)
has db xref: TAIR:0000205

portion of meristem tissue
type: Class
subclass of: portion of plant tissue
subclass of: Restriction
  on property: BFO_0000051
  some values from: meristematic cell
IAO_0000115: A portion of plant tissue (PO:0009007) in which plant cells (PO:0009002) have retained their embryonic characteristics, or have reverted to them secondarily, and that divide to produce new cells that can undergo differentiation to form mature tissues, i.e. they have a capacity for morphogenesis and growth.
has db xref: PO_GIT:472
has exact synonym: meristem (exact)
has exact synonym: meristema (Spanish, exact)
has exact synonym: meristematic tissue (exact)
has exact synonym: 分裂組織 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0009013
in subset: TraitNet

Axiom
annotated source: portion of meristem tissue
annotated property: IAO_0000115
annotated target: A portion of plant tissue (PO:0009007) in which plant cells (PO:0009002) have retained their embryonic characteristics, or have reverted to them secondarily, and that divide to produce new cells that can undergo differentiation to form mature tissues, i.e. they have a capacity for morphogenesis and growth.
has db xref: APweb:Glossary
has db xref: Gramene:Pankaj_Jaiswal

Axiom
annotated source: portion of meristem tissue
annotated property: hasExactSynonym
annotated target: meristema (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: portion of meristem tissue
annotated property: hasExactSynonym
annotated target: 分裂組織 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

meristem L1 layer
type: Class
subclass of: portion of meristem tissue
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot apical meristem
IAO_0000115: A portion of meristem tissue (PO:0009013) that is the outermost layer of a shoot apical meristem (PO:0020148) and gives rise to a shoot system epidermis (PO:0006035).
has db xref: PO_GIT:150
has db xref: PO_GIT:576
has exact synonym: meristema L1 (Spanish, exact)
has exact synonym: 分裂組織 L1 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: tunica (related)
id: PO:0009020
comment: The cells of the meristem L1 layer divide in a strictly anticlinical fashion.

Axiom
annotated source: meristem L1 layer
annotated property: IAO_0000115
annotated target: A portion of meristem tissue (PO:0009013) that is the outermost layer of a shoot apical meristem (PO:0020148) and gives rise to a shoot system epidermis (PO:0006035).
has db xref: Gramene:Pankaj_Jaiswal
has db xref: PMID:11283725
has db xref: PMID:12221985
has db xref: POC:Laurel_Cooper

Axiom
annotated source: meristem L1 layer
annotated property: hasExactSynonym
annotated target: meristema L1 (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: meristem L1 layer
annotated property: hasExactSynonym
annotated target: 分裂組織 L1 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

apical meristem
type: Class
subclass of: portion of meristem tissue
subclass of: Restriction
  on property: BFO_0000051
  some values from: protoderm
IAO_0000115: A maximal portion of meristem tissue (PO:0009013) located at a shoot apex (PO:0000037) or root tip (PO:0000025).
has broad synonym: promeristem (broad)
has db xref: PO_GIT:579
has exact synonym: AM (exact)
has exact synonym: meristema apical (Spanish, exact)
has exact synonym: 頂端分裂組織 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: primary meristem (related)
id: PO:0020144
in subset: TraitNet

Axiom
annotated source: apical meristem
annotated property: IAO_0000115
annotated target: A maximal portion of meristem tissue (PO:0009013) located at a shoot apex (PO:0000037) or root tip (PO:0000025).
has db xref: Gramene:Pankaj_Jaiswal
has db xref: POC:Laurel_Cooper
has db xref: POC:curators

Axiom
annotated source: apical meristem
annotated property: hasExactSynonym
annotated target: meristema apical (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: apical meristem
annotated property: hasExactSynonym
annotated target: 頂端分裂組織 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

shoot apical meristem
type: Class
subclass of: shoot system meristem
subclass of: apical meristem
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot axis apex
IAO_0000115: A shoot system meristem (PO:0006079) formed at the apex of the shoot axis (PO:0025029), including those originating from an axillary bud meristem (PO:0000232).
has broad synonym: promeristem (broad)
has db xref: PO_GIT:472
has exact synonym: SAM (exact)
has exact synonym: meristema apical del epiblasto (epiblastema) (Spanish, exact)
has exact synonym: 茎頂分裂組織 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: primary shoot meristem (related)
id: PO:0020148
in subset: TraitNet

Axiom
annotated source: shoot apical meristem
annotated property: IAO_0000115
annotated target: A shoot system meristem (PO:0006079) formed at the apex of the shoot axis (PO:0025029), including those originating from an axillary bud meristem (PO:0000232).
has db xref: POC:Laurel_Cooper
has db xref: UMSL_curator:fz

Axiom
annotated source: shoot apical meristem
annotated property: hasExactSynonym
annotated target: meristema apical del epiblasto (epiblastema) (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: shoot apical meristem
annotated property: hasExactSynonym
annotated target: 茎頂分裂組織 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

plant axis
type: Class
subclass of: plant organ
IAO_0000115: An axial plant organ (PO:0009008).
created by: rwalls
creation date: 2010-07-01T03:44:41Z
has exact synonym: eje de la planta (Spanish, exact)
has exact synonym: plant axes (exact, plural)
has exact synonym: 植物軸（軸柱） (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025004
in subset: TraitNet
comment: Includes roots and shoots.

Axiom
annotated source: plant axis
annotated property: IAO_0000115
annotated target: An axial plant organ (PO:0009008).
has db xref: POC:curators

Axiom
annotated source: plant axis
annotated property: hasExactSynonym
annotated target: eje de la planta (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant axis
annotated property: hasExactSynonym
annotated target: plant axes (exact, plural)

Axiom
annotated source: plant axis
annotated property: hasExactSynonym
annotated target: 植物軸（軸柱） (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

collective plant organ structure
type: Class
subclass of: collective plant structure
subclass of: Restriction
  on property: BFO_0000051
  some values from: plant organ
IAO_0000115: A collective plant structure (PO:0025497) that is a proper part of a whole plant (PO:0000003), and is composed of two or more adjacent plant organs (PO:0009008) and the associated portions of plant tissue (PO:0009007).
created by: rwalls
creation date: 2010-02-09T04:12:11Z
has db xref: PO_GIT:63
has exact synonym: estructura vegetal colectiva de &#243rgano (Spanish, exact)
has exact synonym: 集合植物器官構造 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025007
in subset: TraitNet
comment: Organs can be of the same type or different types. Examples include flower (PO:0009046), perianth (PO:0009058), and inflorescence (PO:0009049). See also collective organ part structure (PO:0025269), for plant structures composed of parts of multiple organs, but no complete plant organs. This was formerly named collective plant structure.

Axiom
annotated source: collective plant organ structure
annotated property: IAO_0000115
annotated target: A collective plant structure (PO:0025497) that is a proper part of a whole plant (PO:0000003), and is composed of two or more adjacent plant organs (PO:0009008) and the associated portions of plant tissue (PO:0009007).
has db xref: POC:curators

Axiom
annotated source: collective plant organ structure
annotated property: hasExactSynonym
annotated target: estructura vegetal colectiva de &#243rgano (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: collective plant organ structure
annotated property: hasExactSynonym
annotated target: 集合植物器官構造 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

root system
type: Class
subclass of: collective plant organ structure
subclass of: Restriction
  on property: RO_0000056
  some values from: sporophyte development stage
IAO_0000115: A collective plant organ structure (PO:0025007) that produces root meristems (PO:0006085), the plant structures (PO:0009011) that arise from them and the parts thereof.
created by: rwalls
creation date: 2010-07-01T02:11:26Z
has broad synonym: root (broad)
has db xref: PO_GIT:136
has exact synonym: sistema de ra&#237z (Spanish, exact)
has exact synonym: 根系 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025025
in subset: TraitNet
comment: Generally the below ground portion of a vascular plant.

Axiom
annotated source: root system
annotated property: IAO_0000115
annotated target: A collective plant organ structure (PO:0025007) that produces root meristems (PO:0006085), the plant structures (PO:0009011) that arise from them and the parts thereof.
has db xref: POC:Laurel_Cooper
has db xref: POC:curators

Axiom
annotated source: root system
annotated property: hasBroadSynonym
annotated target: root (broad)

Axiom
annotated source: root system
annotated property: hasExactSynonym
annotated target: sistema de ra&#237z (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: root system
annotated property: hasExactSynonym
annotated target: 根系 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

shoot axis
type: Class
subclass of: plant axis
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot system
IAO_0000115: A plant axis (PO:0025004) that is part of a shoot system (PO:0009006).
created by: rwalls
creation date: 2010-07-01T03:46:35Z
has exact synonym: caullome (exact)
has exact synonym: eje del epiblasto (epiblastema) (Spanish, exact)
has exact synonym: シュート軸 (Japanese, exact)
has OBO namespace: plant_anatomy
has related synonym: shoot (related)
id: PO:0025029
in subset: Angiosperm
in subset: Arabidopsis
in subset: Maize
in subset: Poaceae
in subset: Rice
in subset: TraitNet
comment: Often bears leaves and branches. In vascular plants, has at least one node and one internode.

Axiom
annotated source: shoot axis
annotated property: IAO_0000115
annotated target: A plant axis (PO:0025004) that is part of a shoot system (PO:0009006).
has db xref: POC:curators

Axiom
annotated source: shoot axis
annotated property: hasExactSynonym
annotated target: eje del epiblasto (epiblastema) (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: shoot axis
annotated property: hasExactSynonym
annotated target: シュート軸 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

leaf
type: Class
subclass of: phyllome
IAO_0000115: A phyllome (PO:0006001) that is not associated with a reproductive structure.
created by: rwalls
creation date: 2010-07-12T01:31:44Z
has db xref: PO_GIT:274
has db xref: PO_GIT:301
has exact synonym: hoja (Spanish, exact)
has exact synonym: 葉 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025034
in subset: TraitNet

Axiom
annotated source: leaf
annotated property: IAO_0000115
annotated target: A phyllome (PO:0006001) that is not associated with a reproductive structure.
has db xref: POC:curators

Axiom
annotated source: leaf
annotated property: hasExactSynonym
annotated target: hoja (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: leaf
annotated property: hasExactSynonym
annotated target: 葉 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

primordium
type: Class
subclass of: portion of meristem tissue
IAO_0000115: A portion of meristem tissue (PO:0009013) that has as parts protoderm (PO:0006210) and sub-epidermal meristematic tissue and is committed to the development of a particular plant structure (PO:0009011).
created by: rwalls
creation date: 2010-11-15T09:10:22Z
has db xref: PO_GIT:186
has exact synonym: portion of primordial tissue (exact)
has exact synonym: portion of primordium tissue (exact)
has exact synonym: primordia (exact, plural)
has exact synonym: primordio (Spanish, exact)
has exact synonym: 原基（可視的） (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025127
comment: A primordium appears as a protrusion and is the first distinct form of a plant organ (PO:0009008), cardinal organ part (PO:0025001), or collective plant organ structure (PO:0025007). The transition from a primordium to the plant structure it develops into is marked by the development of non-meristematic cells, although meristematic cells may be present after the transition.

Axiom
annotated source: primordium
annotated property: IAO_0000115
annotated target: A portion of meristem tissue (PO:0009013) that has as parts protoderm (PO:0006210) and sub-epidermal meristematic tissue and is committed to the development of a particular plant structure (PO:0009011).
has db xref: POC:curators

Axiom
annotated source: primordium
annotated property: hasExactSynonym
annotated target: primordio (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: primordium
annotated property: hasExactSynonym
annotated target: 原基（可視的） (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

phyllome primordium
type: Class
subclass of: primordium
subclass of: Restriction
  on property: BFO_0000050
  some values from: shoot axis apex
subclass of: Restriction
  on property: RO_0002202
  some values from: phyllome anlagen
IAO_0000115: A primordium (PO:0025127) that develops from a phyllome anlagen (PO:0025430) and is part of a shoot apex (PO:0000037) and is committed to the development of a phyllome (PO:0006001).
created by: rwalls
creation date: 2010-11-15T09:27:11Z
has db xref: PO_GIT:466
has exact synonym: phyllome primordia (exact, plural)
has exact synonym: portion of phyllome primordium tissue (exact)
has exact synonym: primordio del filoma (Spanish, exact)
has exact synonym: フィロム原基（可視的） (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025128
comment: The transition from phyllome primordium to phyllome occurs when the first non-meristematic tissue develops begins to develop.

Axiom
annotated source: phyllome primordium
annotated property: IAO_0000115
annotated target: A primordium (PO:0025127) that develops from a phyllome anlagen (PO:0025430) and is part of a shoot apex (PO:0000037) and is committed to the development of a phyllome (PO:0006001).
has db xref: PMID:11572953
has db xref: POC:curators

Axiom
annotated source: phyllome primordium
annotated property: hasExactSynonym
annotated target: primordio del filoma (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: phyllome primordium
annotated property: hasExactSynonym
annotated target: フィロム原基（可視的） (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

plant anatomical entity
type: Class
subclass of: BFO_0000040
subclass of: Restriction
IAO_0000115: An anatomical entity that is or was part of a plant.
created by: rwalls
creation date: 2010-11-15T11:41:38Z
has db xref: PO_GIT:224
has exact synonym: entidad anat&#243mica vegetal (Spanish, exact)
has exact synonym: 植物 解剖学（形態）的実体 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025131
comment: Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'.

Axiom
annotated source: plant anatomical entity
annotated property: subClassOf
annotated target: Restriction
source: cjm

Axiom
annotated source: plant anatomical entity
annotated property: IAO_0000115
annotated target: An anatomical entity that is or was part of a plant.
has db xref: BFO:0000004
has db xref: CARO:0000000
has db xref: POC:curators

Axiom
annotated source: plant anatomical entity
annotated property: hasExactSynonym
annotated target: entidad anat&#243mica vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant anatomical entity
annotated property: hasExactSynonym
annotated target: 植物 解剖学（形態）的実体 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: plant anatomical entity
annotated property: comment
annotated target: Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'.
has db xref: CAROC:Brownsville2014

phyllome epidermis
type: Class
equivalent class: Class
  intersection of: shoot system epidermis
  intersection of: Restriction
    on property: BFO_0000050
    some values from: phyllome
subclass of: shoot system epidermis
subclass of: Restriction
  on property: BFO_0000050
  some values from: phyllome
IAO_0000115: A portion of shoot system epidermis (PO:0006035) that is part of a phyllome (PO:0006001).
created by: rwalls
creation date: 2010-11-15T02:32:53Z
has exact synonym: epidermis del filoma (Spanish, exact)
has exact synonym: フィロム表皮 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025157

Axiom
annotated source: phyllome epidermis
annotated property: IAO_0000115
annotated target: A portion of shoot system epidermis (PO:0006035) that is part of a phyllome (PO:0006001).
has db xref: POC:Laurel_Cooper
has db xref: POC:curators

Axiom
annotated source: phyllome epidermis
annotated property: hasExactSynonym
annotated target: epidermis del filoma (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: phyllome epidermis
annotated property: hasExactSynonym
annotated target: フィロム表皮 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

portion of plant substance
type: Class
subclass of: plant anatomical entity
IAO_0000115: A portion of organism substance that is or was part of a plant.
created by: rwalls
creation date: 2010-11-18T07:32:44Z
has db xref: PO_GIT:206
has exact synonym: porci&#243n de sustancia vegetal (Spanish, exact)
has exact synonym: 植物を構成する物質の一部 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025161
comment: Refers to organism substance (CARO:0000004) which is defined as: Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism's own genome. For plants, the word "body" refers to a whole plant, or part thereof. Includes substances such as latex, xylem sap, phloem sap, resin, mucilage, oil, cuticle, cutin, and sporopollenin.

Axiom
annotated source: portion of plant substance
annotated property: IAO_0000115
annotated target: A portion of organism substance that is or was part of a plant.
has db xref: CARO:0000004
has db xref: POC:curators

Axiom
annotated source: portion of plant substance
annotated property: hasExactSynonym
annotated target: porci&#243n de sustancia vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: portion of plant substance
annotated property: hasExactSynonym
annotated target: 植物を構成する物質の一部 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

life of whole plant stage
type: Class
subclass of: whole plant development stage
IAO_0000115: A maximal whole plant development stage.
created by: rwalls
creation date: 2011-10-19T10:54:37Z
has db xref: PO_GIT:230
has exact synonym: vida de la planta entera (Spanish, exact)
has exact synonym: 植物体の一生 (Japanese, exact)
has OBO namespace: plant_structure_development_stage
id: PO:0025337
comment: There are only two types of life of whole plant. Every life of a whole plant is either a maximal gametophyte stage or a maximal sporophyte stage.

Axiom
annotated source: life of whole plant stage
annotated property: IAO_0000115
annotated target: A maximal whole plant development stage.
has db xref: POC:curators

Axiom
annotated source: life of whole plant stage
annotated property: hasExactSynonym
annotated target: vida de la planta entera (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: life of whole plant stage
annotated property: hasExactSynonym
annotated target: 植物体の一生 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

cutin
type: Class
subclass of: portion of plant substance
subclass of: Restriction
  on property: BFO_0000050
  some values from: plant cuticle
subclass of: Restriction
  on property: BFO_0000050
  some values from: plant cuticle proper
IAO_0000115: A portion of plant substance (PO:0025161) that is the inner layer of a plant cuticle (PO:0000022), and is composed of a polyester matrix of hydroxy- and hydroxy epoxy fatty acid C16 and C18 chains.
created by: Laurel_Cooper
creation date: 2012-01-06T02:53:37Z
has broad synonym: cutin matrix (broad)
has db xref: PO_GIT:416
has exact synonym: クチン (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025385
comment: Cutin is the insoluble, covalently cross-linked polymer that forms an electron dense layer over the epidermal cells (PO:0004013) of an aerial plant structure.

Axiom
annotated source: cutin
annotated property: IAO_0000115
annotated target: A portion of plant substance (PO:0025161) that is the inner layer of a plant cuticle (PO:0000022), and is composed of a polyester matrix of hydroxy- and hydroxy epoxy fatty acid C16 and C18 chains.
has db xref: PMID:12467640
has db xref: POC:curators

Axiom
annotated source: cutin
annotated property: hasExactSynonym
annotated target: クチン (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

cuticular wax
type: Class
subclass of: portion of plant substance
subclass of: Restriction
  on property: BFO_0000050
  some values from: plant cuticle
IAO_0000115: A portion of plant substance (PO:0025161) comprised predominantly of very long chain aliphatic lipids and is part of a plant cuticle (PO:0000022).
created by: Laurel_Cooper
creation date: 2012-01-06T02:57:22Z
has db xref: PO_GIT:416
has exact synonym: cera cuticular (Spanish, exact)
has exact synonym: クチクラワックス (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025386
comment: Also includes triterpenoids and minor secondary metabolites, such as sterols and flavonoids. May be embedded within or external to the layer of cutin of the cuticle proper. Phenotypically, wax is distinguished as the glaucous or whitish bloom on a part of a plant shoot system that corresponds to crystalloid epicuticular wax with light scattering capacity.

Axiom
annotated source: cuticular wax
annotated property: IAO_0000115
annotated target: A portion of plant substance (PO:0025161) comprised predominantly of very long chain aliphatic lipids and is part of a plant cuticle (PO:0000022).
has db xref: PMID:12467640
has db xref: PO_Ref:00010

Axiom
annotated source: cuticular wax
annotated property: hasExactSynonym
annotated target: cera cuticular (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: cuticular wax
annotated property: hasExactSynonym
annotated target: クチクラワックス (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

plant cuticle proper
type: Class
subclass of: portion of plant substance
IAO_0000115: A portion of plant substance (PO:0025161) that is the inner layer of a plant cuticle (PO:0000022), composed primarily of cutin (PO:0025385), embedded and overlayed with cuticular wax (PO:0025386).
created by: Laurel_Cooper
creation date: 2012-01-06T03:06:02Z
has broad synonym: cuticle proper (broad)
has broad synonym: cutin matrix (broad)
has db xref: PO_GIT:416
has exact synonym: cut&#237cula propia de la planta (Spanish, exact)
has exact synonym: 植物クチクラproper (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025387

Axiom
annotated source: plant cuticle proper
annotated property: IAO_0000115
annotated target: A portion of plant substance (PO:0025161) that is the inner layer of a plant cuticle (PO:0000022), composed primarily of cutin (PO:0025385), embedded and overlayed with cuticular wax (PO:0025386).
has db xref: PMID:12467640
has db xref: POC:Laurel_Cooper

Axiom
annotated source: plant cuticle proper
annotated property: hasExactSynonym
annotated target: cut&#237cula propia de la planta (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant cuticle proper
annotated property: hasExactSynonym
annotated target: 植物クチクラproper (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

phyllome anlagen
type: Class
subclass of: portion of meristem tissue
subclass of: Restriction
  on property: BFO_0000050
  some values from: peripheral zone
IAO_0000115: A portion of meristem tissue (PO:0009013) that is part of a peripheral zone (PO:0000225) of a shoot apical meristem (PO:0020148) and will give rise to a phyllome primordium (PO:0025128).
created by: Laurel_Cooper
creation date: 2012-02-07T08:20:10Z
has broad synonym: phyllome meristem (broad)
has db xref: PO_GIT:427
has exact synonym: フィロム原基 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025430
comment: The phyllome anlagen is only detectable by gene expression, not morphology.

Axiom
annotated source: phyllome anlagen
annotated property: IAO_0000115
annotated target: A portion of meristem tissue (PO:0009013) that is part of a peripheral zone (PO:0000225) of a shoot apical meristem (PO:0020148) and will give rise to a phyllome primordium (PO:0025128).
has db xref: POC:Laurel_Cooper
has db xref: POC:curators

Axiom
annotated source: phyllome anlagen
annotated property: hasExactSynonym
annotated target: フィロム原基 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

root anlagen
type: Class
subclass of: portion of meristem tissue
IAO_0000115: A portion of meristem tissue (PO:0009013) that is committed to the development of a root primordium (PO:0005029).
created by: Laurel_Cooper
creation date: 2012-02-08T01:00:56Z
has db xref: PO_GIT:427
has exact synonym: precursor de ra&#237 (Spanish, exact)
has exact synonym: 根原基 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025433
comment: Only detectable by gene expression, not morphology. May arise in a pericycle (PO:0006203), as for lateral roots in most seed plants, an endodermis (PO:0000252), as for lateral roots in ferns, or from parenchyma cells (PO:0000074) that are part a shoot axis (PO:0025029), in the case of a basal root (PO:0025002) or shoot-borne root (PO:0000042).

Axiom
annotated source: root anlagen
annotated property: IAO_0000115
annotated target: A portion of meristem tissue (PO:0009013) that is committed to the development of a root primordium (PO:0005029).
has db xref: POC:curators

Axiom
annotated source: root anlagen
annotated property: hasExactSynonym
annotated target: precursor de ra&#237 (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: root anlagen
annotated property: hasExactSynonym
annotated target: 根原基 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

multi-tissue plant structure
type: Class
subclass of: plant structure
IAO_0000115: A plant structure (PO:0009011) that has as parts two or more portions of plant tissue (PO:0009007) of at least two different types and which through specific morphogenetic processes forms a single structural unit demarcated by primarily bona-fide boundaries from other structural units of different types.
created by: Laurel_Cooper
creation date: 2012-06-11T14:57:00Z
has db xref: PO_GIT:480
has exact synonym: estructura vegetal con m&#250ltiples tejidos (Spanish, exact)
has exact synonym: 複数の組織からなる植物構造 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025496
comment: Most multi-tissue plant structures have at least a small connection to other plant structures via a fiat boundary, such as where a leaf (PO:0025034) connects to a shoot axis (PO:0025029), a petal (PO:0009032) connects to a receptacle (PO:0009064), or a branch (PO:0025073) connects to a stem (PO:0009047). Refers to CARO:0000055 multi-tissue structure, def'n: Anatomical structure that has as parts two or more portions of tissue of at least two different types, and which through specific morphogenetic processes, form a single distinct structural unit demarcated by bona-fide boundries from other structural units of differnt types.

Axiom
annotated source: multi-tissue plant structure
annotated property: IAO_0000115
annotated target: A plant structure (PO:0009011) that has as parts two or more portions of plant tissue (PO:0009007) of at least two different types and which through specific morphogenetic processes forms a single structural unit demarcated by primarily bona-fide boundaries from other structural units of different types.
has db xref: CARO:0000055
has db xref: POC:curators

Axiom
annotated source: multi-tissue plant structure
annotated property: hasExactSynonym
annotated target: estructura vegetal con m&#250ltiples tejidos (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: multi-tissue plant structure
annotated property: hasExactSynonym
annotated target: 複数の組織からなる植物構造 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

collective plant structure
type: Class
subclass of: plant structure
IAO_0000115: A plant structure (PO:0009011) that is a proper part of a whole plant (PO:0000003) and includes two or more adjacent plant organs (PO:0009008) or adjacent cardinal organ parts (PO:0025001), along with any associated portions of plant tissue (PO:0009007).
created by: Laurel_Cooper
creation date: 2012-06-11T15:09:20Z
has db xref: PO_GIT:479
has exact synonym: estructura vegetal colectiva (Spanish, exact)
has exact synonym: 集合的植物構造 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025497
comment: This is a parent term to describe both collective organ part structure (PO:0025269) (e.g. septum), as well as collective plant organ structure (PO:0025007) (which was formerly named collective plant structure), for example shoot system (PO:0009006).

Axiom
annotated source: collective plant structure
annotated property: IAO_0000115
annotated target: A plant structure (PO:0009011) that is a proper part of a whole plant (PO:0000003) and includes two or more adjacent plant organs (PO:0009008) or adjacent cardinal organ parts (PO:0025001), along with any associated portions of plant tissue (PO:0009007).
has db xref: POC:curators

Axiom
annotated source: collective plant structure
annotated property: hasExactSynonym
annotated target: estructura vegetal colectiva (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: collective plant structure
annotated property: hasExactSynonym
annotated target: 集合的植物構造 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

plant sap
type: Class
subclass of: portion of plant substance
IAO_0000115: A portion of plant substance (PO:0025161) that is an aqueous solution that can be transported through the apoplast (GO:0048046) or symplast (GO:0055044).
created by: Laurel_Cooper
creation date: 2013-04-05T17:15:40Z
has db xref: GO:0048046
has db xref: GO:0055044
has db xref: PO_GIT:530
has exact synonym: savia de la planta (Spanish, exact)
has exact synonym: 植物液 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025538
comment: Plant sap should not be confused with latex, resins or plant cell cytoplasm.

Axiom
annotated source: plant sap
annotated property: IAO_0000115
annotated target: A portion of plant substance (PO:0025161) that is an aqueous solution that can be transported through the apoplast (GO:0048046) or symplast (GO:0055044).
has db xref: POC:Laurel_Cooper

Axiom
annotated source: plant sap
annotated property: hasExactSynonym
annotated target: savia de la planta (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant sap
annotated property: hasExactSynonym
annotated target: 植物液 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

plant resin
type: Class
subclass of: portion of plant substance
IAO_0000115: A portion of plant substance (PO:0025161) that consists of a complex mixture of organic aromatic compounds such as mono-, sesqui-, and diterpenoids.
created by: Laurel_Cooper
creation date: 2014-04-10T09:51:14Z
has db xref: CHEBI:24913
has db xref: CHEBI:26873
has db xref: PO_GIT:587
has exact synonym: pitch (exact)
has OBO namespace: plant_anatomy
has related synonym: oleoresin (related)
id: PO:0025603
in subset: Gymnosperms
comment: Plant resins are often produced by Gymnosperms but not restricted to those plants. In the conifers, plant resins are constitutively and inducibly produced through the secretory activity of resin cells (PO:0025604), and can be exuded through a resin canal (PO:0005665) to a site of injury or predator attack.

Axiom
annotated source: plant resin
annotated property: IAO_0000115
annotated target: A portion of plant substance (PO:0025161) that consists of a complex mixture of organic aromatic compounds such as mono-, sesqui-, and diterpenoids.
has db xref: PMID:11337413
has db xref: POC:Laurel_Cooper

native plant cell
type: Class
subclass of: plant cell
IAO_0000115: A plant cell (PO:0009002) that is either part of a multicellular whole plant (PO:0000003) 'in vivo' or a unicellular organism 'in natura' (i.e. part of a natural environment).
created by: Laurel_Cooper
creation date: 2014-05-13T16:51:47Z
has db xref: PO_GIT:586
has OBO namespace: plant_anatomy
id: PO:0025606
comment: A native plant cell is one that is not grown or maintained in vitro, nor part of an in vitro plant structure (PO:0000004).

Axiom
annotated source: native plant cell
annotated property: IAO_0000115
annotated target: A plant cell (PO:0009002) that is either part of a multicellular whole plant (PO:0000003) 'in vivo' or a unicellular organism 'in natura' (i.e. part of a natural environment).
has db xref: POC:Laurel_Cooper

sporophyte development stage
type: Class
subclass of: whole plant development stage
subclass of: Restriction
  on property: BFO_0000050
  some values from: life of whole plant stage
IAO_0000115: A whole plant development stage (PO:0007033) that has as primary participant a whole plant (PO:0000003) during the interval between fertilization (or apogamy) and death.
created by: rwalls
creation date: 2010-07-15T02:56:11Z
has db xref: PO_GIT:139
has db xref: PO_GIT:68
has exact synonym: fase esporof&#237tica (Spanish, exact)
has exact synonym: sporophytic development stage (exact)
has exact synonym: sporophytic phase (exact)
has exact synonym: sporphyte phase (exact)
has exact synonym: 胞子体発生過程 (Japanese, exact)
has OBO namespace: plant_structure_development_stage
id: PO:0028002
in subset: TraitNet
comment: A whole plant (PO:0000003) in the sporophyte development stage usually has twice the chromosome complement of a plant in the gametophytic phase, but may not in the case of apogamy. Examples of apogamy include both naturally occurring instances (such as sporophytes arising form haploid cells as in bryophytes or ferns) as well as in vitro instances (such as haploid embryo culture or in vitro fusion of non-gamete cells or protoplasts). During the sporophyte development stage, a plant may produce meiospores by meiosis.

Axiom
annotated source: sporophyte development stage
annotated property: IAO_0000115
annotated target: A whole plant development stage (PO:0007033) that has as primary participant a whole plant (PO:0000003) during the interval between fertilization (or apogamy) and death.
has db xref: POC:curators

Axiom
annotated source: sporophyte development stage
annotated property: hasExactSynonym
annotated target: fase esporof&#237tica (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: sporophyte development stage
annotated property: hasExactSynonym
annotated target: 胞子体発生過程 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese