temj2
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/dpo.owl>) VersionIRI(<http://purl.obolibrary.org/obo/fbcv/2017-07-05/dpo.owl>))) [Axioms: 4806 Logical Axioms: 930]
Imports terms from CHEBI - datestamp = 02:12:2011 01:47. And terms imported from http://purl.obolibrary.org/obo/go/releases/2017-06-29/go-simple.obo
FlyBase miscellaneous CV
OBO-Edit 2.3.1
05:07:2017 12:00
1.2
definition
OBO Foundry Uniquename
term replaced by
camcur
BrainName official abbreviation
BRAND NAME
EmbDevSlim
FORMULA
FlyTed temp subset for edit tracking purposes
Testis slim
INN
IUPAC NAME
InChI
InChIKey
terms for rd test ontology
SMILES
Abnormal/normal slim
Absent/present slim
Attribute slim
camcur
cell_quality
cur
warning of impending obsoletion
Term not to be used for direct annotation
Term not to be used for direct manual annotation
MGI ribbon terms
larval olfactory system
Relational slim: types of quality that require an additional entity in order to exist
Systematic synonym
Value slim
subset_property
subset_property
synonym_type_property
consider
has_alternative_id
has_broad_synonym
database_cross_reference
has_exact_synonym
has_narrow_synonym
has_obo_format_version
has_obo_namespace
has_related_synonym
has_scope
has_synonym_type
in_subset
in_subset
shorthand
synonym
BFO:0000050
OBO_REL:part_of
part_of
external
relationship
part_of
part_of
part_of
BFO:0000051
OBO_REL:has_part
relationship
has_part
has_part
has_part
ends_before
X precedes Y iff: end(X) before_or_simultaneous_with start(Y)
precedes
djs93
2009-10-09T10:00:53Z
BFO:0000062
OBO_REL:preceded_by
proceeds
starts_after
preceded_by
preceded_by
X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)
preceded_by
BFO:0000066
gene_ontology
occurs_in
occurs_in
occurs in
RO:0000052
FlyBase miscellaneous CV
inheres_in
inheres_in
inheres_in
<=
Primitive instance level timing relation between events
before_or_simultaneous_with
t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)
simultaneous_with
t1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaeous_with t2)
before
Perviously used http://purl.obolibrary.org/obo/RO_0002122 - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line.
during_which_ends
Previously had ID http://purl.obolibrary.org/obo/RO_0002124 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
encompasses
X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
ends_after
RO:0002087
starts_at_end_of
starts_at_end_of
starts_at_end_of
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
immediately_preceded_by
Previously had ID http://purl.obolibrary.org/obo/RO_0002123 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
during_which_starts
starts_before
RO:0002090
ends_at_start_of
ends_at_start_of
ends_at_start_of
X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
immediately_precedes
RO:0002091
gene_ontology
starts_during
starts_during
X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y)). This relations will be used after 2013-05-21.
starts_during
RO:0002092
gene_ontology
happens_during
happens_during
X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y)). This relation will be used after 2013-05-21.
happens_during
RO:0002093
gene_ontology
ends_during
ends_during
X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y). This relation will be used after 2013-05-21.
ends_during
RO:0002211
external
gene_ontology
regulates
regulates
regulates
RO:0002212
external
negatively_regulates
negatively_regulates
negatively regulates
RO:0002213
external
positively_regulates
positively_regulates
positively regulates
has_member
has_age
FlyBase miscellaneous CV
conditionality
conditionality
q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
FlyBase miscellaneous CV
decreased_in_magnitude_relative_to
This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'.
This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'.
decreased_in_magnitude_relative_to
q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
PATOC:CJM
q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
FlyBase miscellaneous CV
different_in_magnitude_relative_to
different_in_magnitude_relative_to
q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
PATOC:CJM
s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
FlyBase miscellaneous CV
has_cross_section
Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.
Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.
has_cross_section
s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
PATOC:CJM
FlyBase miscellaneous CV
has_role
has role
q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
FlyBase miscellaneous CV
increased_in_magnitude_relative_to
This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'.
This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'.
increased_in_magnitude_relative_to
q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
PATOC:CJM
FlyBase miscellaneous CV
qualifier
temporary placeholder - this means that Obol could not infer the correct relation
qualifier
q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.
FlyBase miscellaneous CV
reciprocal_of
There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality.
There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality.
reciprocal_of
q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.
PATOC:CJM
q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
FlyBase miscellaneous CV
similar_in_magnitude_relative_to
similar_in_magnitude_relative_to
q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
PATOC:CJM
monadic_form_of
FlyBase miscellaneous CV
singly_occurring_form_of
PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them.
PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them.
singly_occurring_form_of
FlyBase miscellaneous CV
towards
temporary placeholder - may be placed in OBO_REL; with relational qualities, the additional argument is the 'towards' argument; eg sensitivity towards chlorine. Relation binding a relational quality or disposition to the relevant type of entity.
towards
0
100
has_increased_mortality_rate
time dimension = 0. An event is an instant.
event
Using BFO process boundary here, although I'd rather use a term name that didn't reference processes at all, which I see as distinct from stages.
process boundary
continuant
An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.
djs93
2009-10-01T05:56:28Z
BFO:0000003
FBdv:00007008
occurrent
An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.
BFOC:ANON
independent continuant
object aggregate
organism
An amino-acid anion that has formula CH2NO2.
carbamate
chebi_ontology
CH2NO2
Carbamat
InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1
InChIKey=KXDHJXZQYSOELW-UHFFFAOYSA-M
Karbamat
NC([O-])=O
carbamate ion
carbamic acid, ion(1-)
CHEBI:13941
carbamate
An amino-acid anion that has formula CH2NO2.
ANON:ANON
carbamate
IUPAC:
carbamate
UniProt:
CH2NO2
ChEBI:
Carbamat
ChEBI:
InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1
ChEBI:
InChIKey=KXDHJXZQYSOELW-UHFFFAOYSA-M
ChEBI:
Karbamat
ChEBI:
NC([O-])=O
ChEBI:
carbamate ion
ChemIDplus:
carbamic acid, ion(1-)
ChemIDplus:
A large group of antibiotics isolated from various species of Streptomyces and characterised by having a substituted phenoxazine ring linked to two cyclic heterodetic peptides.
Actinomycin
actinomycin
chebi_ontology
actinomycins
CHEBI:15369
actinomycin
A large group of antibiotics isolated from various species of Streptomyces and characterised by having a substituted phenoxazine ring linked to two cyclic heterodetic peptides.
ANON:ANON
Actinomycin
KEGG COMPOUND:
actinomycin
UniProt:
actinomycins
ChEBI:
A nucleobase-containing molecular entity with an oligomeric structure comprised of a linear sequence of 13 or more nucleotide residues.
Polynucleotide
chebi_ontology
C10H17O10PR2(C5H8O6PR)n
polynucleotides
CHEBI:15986
polynucleotide
A nucleobase-containing molecular entity with an oligomeric structure comprised of a linear sequence of 13 or more nucleotide residues.
ANON:ANON
Polynucleotide
KEGG COMPOUND:
C10H17O10PR2(C5H8O6PR)n
KEGG COMPOUND:
polynucleotides
ChEBI:
Compounds having the structure RSR (R =/= H). Such compounds were once called thioethers.
sulfides
chebi_ontology
RSR
SR2
Sulfide
Thioether
organic sulfides
thioether
thioethers
CHEBI:16385
organic sulfide
Compounds having the structure RSR (R =/= H). Such compounds were once called thioethers.
ANON:ANON
sulfides
IUPAC:
RSR
IUPAC:
SR2
KEGG COMPOUND:
Sulfide
KEGG COMPOUND:
Thioether
KEGG COMPOUND:
organic sulfides
ChEBI:
thioether
UniProt:
thioethers
IUPAC:
Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid.
Peptide
peptides
chebi_ontology
C2H4NO2R(C2H2NOR)n
Peptid
peptido
peptidos
CHEBI:16670
peptide
Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid.
ANON:ANON
Peptide
KEGG COMPOUND:
peptides
IUPAC:
C2H4NO2R(C2H2NOR)n
KEGG COMPOUND:
Peptid
ChEBI:
peptido
ChEBI:
peptidos
ChEBI:
The simplest aldehyde.
FORMALDEHYDE
Formaldehyde
formaldehyde
chebi_ontology
CH2O
FORMALIN
Formaldehyd
Formalin
InChI=1S/CH2O/c1-2/h1H2
InChIKey=WSFSSNUMVMOOMR-UHFFFAOYSA-N
Methanal
Methylene oxide
Oxomethane
Oxomethylene
[H]C([H])=O
CHEBI:16842
formaldehyde
The simplest aldehyde.
ANON:ANON
FORMALDEHYDE
PDBeChem:
Formaldehyde
KEGG COMPOUND:
formaldehyde
IUPAC:
CH2O
KEGG COMPOUND:
FORMALIN
ChEMBL:
Formaldehyd
NIST Chemistry WebBook:
Formalin
KEGG COMPOUND:
InChI=1S/CH2O/c1-2/h1H2
ChEBI:
InChIKey=WSFSSNUMVMOOMR-UHFFFAOYSA-N
ChEBI:
Methanal
KEGG COMPOUND:
Methylene oxide
KEGG COMPOUND:
Oxomethane
KEGG COMPOUND:
Oxomethylene
KEGG COMPOUND:
[H]C([H])=O
ChEBI:
High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms.
Deoxyribonucleic acid
deoxyribonucleic acids
chebi_ontology
(Deoxyribonucleotide)m
(Deoxyribonucleotide)n
(Deoxyribonucleotide)n+m
DNA
DNAn
DNAn+1
DNS
Desoxyribonukleinsaeure
deoxyribonucleic acids
desoxyribose nucleic acid
thymus nucleic acid
CHEBI:16991
deoxyribonucleic acid
thymus nucleic acid
ChEBI:
High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms.
ANON:ANON
Deoxyribonucleic acid
KEGG COMPOUND:
deoxyribonucleic acids
IUPAC:
(Deoxyribonucleotide)m
KEGG COMPOUND:
(Deoxyribonucleotide)n
KEGG COMPOUND:
(Deoxyribonucleotide)n+m
KEGG COMPOUND:
DNA
IUPAC:
DNA
KEGG COMPOUND:
DNA
UniProt:
DNAn
KEGG COMPOUND:
DNAn+1
KEGG COMPOUND:
DNS
ChEBI:
Desoxyribonukleinsaeure
ChEBI:
deoxyribonucleic acids
ChEBI:
desoxyribose nucleic acid
ChemIDplus:
A compound in which a carbonyl group is bonded to two carbon atoms: R2C=O (neither R may be H).
Ketone
ketones
chebi_ontology
COR2
Keton
R-CO-R'
[*]C([*])=O
cetone
ketones
CHEBI:17087
ketone
A compound in which a carbonyl group is bonded to two carbon atoms: R2C=O (neither R may be H).
ANON:ANON
Ketone
KEGG COMPOUND:
ketones
IUPAC:
COR2
ChEBI:
Keton
ChEBI:
R-CO-R'
KEGG COMPOUND:
[*]C([*])=O
ChEBI:
cetone
ChEBI:
ketones
ChEBI:
A compound in which one or more of the OH groups of phosphoric acid have been replaced with an amino or substituted amino group. The term is commonly confined to the phosphoric triamides, P(=O)(NR2)3, since replacement of one or two OH groups produces phosphoramidic acids: P(=O)(OH)(NR2)2 , P(=O)(OH)2(NR2).
chebi_ontology
phosphamide
phosphamides
phosphoramides
CHEBI:17102
phosphoramide
A compound in which one or more of the OH groups of phosphoric acid have been replaced with an amino or substituted amino group. The term is commonly confined to the phosphoric triamides, P(=O)(NR2)3, since replacement of one or two OH groups produces phosphoramidic acids: P(=O)(OH)(NR2)2 , P(=O)(OH)2(NR2).
ANON:ANON
phosphamide
ChEBI:
phosphamides
ChEBI:
phosphoramides
ChEBI:
A compound RC(=O)H, in which a carbonyl group is bonded to one hydrogen atom and to one R group.
Aldehyde
aldehyde
aldehydes
chebi_ontology
Aldehyd
CHOR
RC(=O)H
[H]C([*])=O
aldehido
aldehidos
aldehydes
aldehydum
CHEBI:17478
aldehyde
A compound RC(=O)H, in which a carbonyl group is bonded to one hydrogen atom and to one R group.
ANON:ANON
Aldehyde
KEGG COMPOUND:
aldehyde
ChEBI:
aldehyde
IUPAC:
aldehydes
IUPAC:
Aldehyd
ChEBI:
CHOR
ChEBI:
RC(=O)H
IUPAC:
[H]C([*])=O
ChEBI:
aldehido
ChEBI:
aldehidos
ChEBI:
aldehydes
ChEBI:
aldehydum
ChEBI:
A carbamate ester that has formula C3H7NO2.
Urethane
ethyl carbamate
chebi_ontology
C3H7NO2
CCOC(N)=O
Ethyl carbamate
InChI=1S/C3H7NO2/c1-2-6-3(4)5/h2H2,1H3,(H2,4,5)
InChIKey=JOYRKODLDBILNP-UHFFFAOYSA-N
carbamic acid ethyl ester
CHEBI:17967
urethane
A carbamate ester that has formula C3H7NO2.
ANON:ANON
Urethane
KEGG COMPOUND:
ethyl carbamate
IUPAC:
C3H7NO2
KEGG COMPOUND:
CCOC(N)=O
ChEBI:
Ethyl carbamate
KEGG COMPOUND:
InChI=1S/C3H7NO2/c1-2-6-3(4)5/h2H2,1H3,(H2,4,5)
ChEBI:
InChIKey=JOYRKODLDBILNP-UHFFFAOYSA-N
ChEBI:
carbamic acid ethyl ester
ChEBI:
Ribonucleoside
chebi_ontology
C5H9O4R
ribonucleosides
CHEBI:18254
ribonucleoside
Ribonucleoside
KEGG COMPOUND:
C5H9O4R
KEGG COMPOUND:
ribonucleosides
ChEBI:
An aminonaphthalene that has formula C10H9NO4S.
4-amino-3-hydroxynaphthalene-1-sulfonic acid
chebi_ontology
1-amino-2-naphthol-4-sulfonic acid
1-amino-4-sulfo-2-naphthol
4-amino-3-hydroxynaphthalene-1-sulphonic acid
C10H9NO4S
InChI=1S/C10H9NO4S/c11-10-7-4-2-1-3-6(7)9(5-8(10)12)16(13,14)15/h1-5,12H,11H2,(H,13,14,15)
InChIKey=RXCMFQDTWCCLBL-UHFFFAOYSA-N
Nc1c(O)cc(c2ccccc12)S(O)(=O)=O
CHEBI:19024
4-amino-3-hydroxynaphthalene-1-sulfonic acid
An aminonaphthalene that has formula C10H9NO4S.
ANON:ANON
4-amino-3-hydroxynaphthalene-1-sulfonic acid
IUPAC:
1-amino-2-naphthol-4-sulfonic acid
ChemIDplus:
1-amino-4-sulfo-2-naphthol
ChemIDplus:
4-amino-3-hydroxynaphthalene-1-sulphonic acid
ChemIDplus:
C10H9NO4S
ChEBI:
InChI=1S/C10H9NO4S/c11-10-7-4-2-1-3-6(7)9(5-8(10)12)16(13,14)15/h1-5,12H,11H2,(H,13,14,15)
ChEBI:
InChIKey=RXCMFQDTWCCLBL-UHFFFAOYSA-N
ChEBI:
Nc1c(O)cc(c2ccccc12)S(O)(=O)=O
ChEBI:
A bromoalkane that has formula C2H4BrCl.
1-bromo-2-chloroethane
chebi_ontology
1,2-bromochloroethane
1,2-chlorobromoethane
2-bromo-1-chloroethane
2-bromoethyl chloride
2-chloroethyl bromide
C2H4BrCl
ClCCBr
InChI=1S/C2H4BrCl/c3-1-2-4/h1-2H2
InChIKey=IBYHHJPAARCAIE-UHFFFAOYSA-N
beta-chloroethyl bromide
ethylene chlorobromide
CHEBI:19032
1-bromo-2-chloroethane
A bromoalkane that has formula C2H4BrCl.
ANON:ANON
1-bromo-2-chloroethane
IUPAC:
1,2-bromochloroethane
NIST Chemistry WebBook:
1,2-chlorobromoethane
ChemIDplus:
2-bromo-1-chloroethane
ChemIDplus:
2-bromoethyl chloride
NIST Chemistry WebBook:
2-chloroethyl bromide
NIST Chemistry WebBook:
C2H4BrCl
ChEBI:
ClCCBr
ChEBI:
InChI=1S/C2H4BrCl/c3-1-2-4/h1-2H2
ChEBI:
InChIKey=IBYHHJPAARCAIE-UHFFFAOYSA-N
ChEBI:
beta-chloroethyl bromide
NIST Chemistry WebBook:
ethylene chlorobromide
ChemIDplus:
A member of the class of benzoquinones that is 1,4-benzoquinone in which the hydrogens at positions 2 and 5 are replaced by aziridin-1-yl groups.
2,5-bis(aziridin-1-yl)cyclohexa-2,5-diene-1,4-dione
chebi_ontology
2,5,-bis(ethyleneimine)-1,4-benzoquinone
2,5,-bisethylene-imine-1,4-benzoquinone
2,5-Bisaethyleniminobenzochinon-1,4
2,5-bis(1-aziridinyl)-2,5-cyclohexadiene-1,4-dione
2,5-bis(1-aziridinyl)-p-benzoquinone
2,5-bis(1-aziridynyl)benzoquinone
2,5-bis(aziridino)-1,4-benzoquinone
2,5-bis(aziridino)benzoquinone
2,5-bis(ethyleneimino)-1,4-benzoquinone
2,5-bis-ethyleniminobenzoquinone
2,5-bisethyleneiminebenzoquinone
2,5-di(ethyleneimino)-1,4-benzoquinone
2,5-diaziridinyl-1,4-benzoquinone
3,6-diaziridinyl-1,4-benzoquinone
C10H10N2O2
DZQ
InChI=1S/C10H10N2O2/c13-9-6-8(12-3-4-12)10(14)5-7(9)11-1-2-11/h5-6H,1-4H2
InChIKey=RCWJMKCTHJPXJV-UHFFFAOYSA-N
O=C1C=C(N2CC2)C(=O)C=C1N1CC1
TW 13
ethylenimine quinone
CHEBI:19363
2,5-bis(aziridin-1-yl)-1,4-benzoquinone
A member of the class of benzoquinones that is 1,4-benzoquinone in which the hydrogens at positions 2 and 5 are replaced by aziridin-1-yl groups.
ANON:ANON
2,5-bis(aziridin-1-yl)cyclohexa-2,5-diene-1,4-dione
IUPAC:
2,5,-bis(ethyleneimine)-1,4-benzoquinone
ChEBI:
2,5,-bisethylene-imine-1,4-benzoquinone
ChEBI:
2,5-Bisaethyleniminobenzochinon-1,4
ChEBI:
2,5-bis(1-aziridinyl)-2,5-cyclohexadiene-1,4-dione
ChemIDplus:
2,5-bis(1-aziridinyl)-p-benzoquinone
ChemIDplus:
2,5-bis(1-aziridynyl)benzoquinone
ChemIDplus:
2,5-bis(aziridino)-1,4-benzoquinone
ChemIDplus:
2,5-bis(aziridino)benzoquinone
ChemIDplus:
2,5-bis(ethyleneimino)-1,4-benzoquinone
ChemIDplus:
2,5-bis-ethyleniminobenzoquinone
ChemIDplus:
2,5-bisethyleneiminebenzoquinone
ChemIDplus:
2,5-di(ethyleneimino)-1,4-benzoquinone
ChemIDplus:
2,5-diaziridinyl-1,4-benzoquinone
ChemIDplus:
3,6-diaziridinyl-1,4-benzoquinone
ChEBI:
C10H10N2O2
ChEBI:
DZQ
ChEBI:
InChI=1S/C10H10N2O2/c13-9-6-8(12-3-4-12)10(14)5-7(9)11-1-2-11/h5-6H,1-4H2
ChEBI:
InChIKey=RCWJMKCTHJPXJV-UHFFFAOYSA-N
ChEBI:
O=C1C=C(N2CC2)C(=O)C=C1N1CC1
ChEBI:
TW 13
ChemIDplus:
ethylenimine quinone
ChemIDplus:
chebi_ontology
CHEBI:19508
2-chloroethyl methanesulfonate
chebi_ontology
CHEBI:19579
2-fluoroethyl methanesulfonate
A pyrimidine having keto groups at the 2- and 4-positions and a bromo group at the 5-position.
5-bromopyrimidine-2,4(1H,3H)-dione
chebi_ontology
1,2,3,4-tetrahydro-5-bromo-2,4-pyrimidinedione
5-bromo-2,4(1H,3H)-pyrimidinedione
Brc1c[nH]c(=O)[nH]c1=O
C4H3BrN2O2
InChI=1S/C4H3BrN2O2/c5-2-1-6-4(9)7-3(2)8/h1H,(H2,6,7,8,9)
InChIKey=LQLQRFGHAALLLE-UHFFFAOYSA-N
bromouracil
CHEBI:20552
5-bromouracil
A pyrimidine having keto groups at the 2- and 4-positions and a bromo group at the 5-position.
ANON:ANON
5-bromopyrimidine-2,4(1H,3H)-dione
IUPAC:
1,2,3,4-tetrahydro-5-bromo-2,4-pyrimidinedione
NIST Chemistry WebBook:
5-bromo-2,4(1H,3H)-pyrimidinedione
NIST Chemistry WebBook:
Brc1c[nH]c(=O)[nH]c1=O
ChEBI:
C4H3BrN2O2
ChEBI:
InChI=1S/C4H3BrN2O2/c5-2-1-6-4(9)7-3(2)8/h1H,(H2,6,7,8,9)
ChEBI:
InChIKey=LQLQRFGHAALLLE-UHFFFAOYSA-N
ChEBI:
bromouracil
ChemIDplus:
A uridine having a bromo substituent at the 5-position.
5-bromouridine
chebi_ontology
1-beta-ribofuranosyl-5-bromo-uracil
5-bromo-1-beta-D-ribofuranosylpyrimidine-2,4(1H,3H)-dione
BrU
C9H11BrN2O6
InChI=1S/C9H11BrN2O6/c10-3-1-12(9(17)11-7(3)16)8-6(15)5(14)4(2-13)18-8/h1,4-6,8,13-15H,2H2,(H,11,16,17)/t4-,5-,6-,8-/m1/s1
InChIKey=AGFIRQJZCNVMCW-UAKXSSHOSA-N
OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cc(Br)c(=O)[nH]c1=O
CHEBI:20553
5-bromouridine
A uridine having a bromo substituent at the 5-position.
ANON:ANON
5-bromouridine
ChEBI:
5-bromouridine
IUPAC:
1-beta-ribofuranosyl-5-bromo-uracil
ChemIDplus:
5-bromo-1-beta-D-ribofuranosylpyrimidine-2,4(1H,3H)-dione
ChEBI:
BrU
ChEBI:
C9H11BrN2O6
ChEBI:
InChI=1S/C9H11BrN2O6/c10-3-1-12(9(17)11-7(3)16)8-6(15)5(14)4(2-13)18-8/h1,4-6,8,13-15H,2H2,(H,11,16,17)/t4-,5-,6-,8-/m1/s1
ChEBI:
InChIKey=AGFIRQJZCNVMCW-UAKXSSHOSA-N
ChEBI:
OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cc(Br)c(=O)[nH]c1=O
ChEBI:
A member of the class of tetraphenes that is tetraphene in which the hydrogens at positions 7 and 12 are replaced by bromomethyl and methyl groups, respectively.
7-(bromomethyl)-12-methyltetraphene
chebi_ontology
7-BrMe-12-MeBA
7-bromomethyl-12-methylbenz[a]anthracene
7-bromomethyl-12-methylbenzanthracene
C20H15Br
Cc1c2ccccc2c(CBr)c2ccc3ccccc3c12
InChI=1S/C20H15Br/c1-13-15-7-4-5-9-17(15)19(12-21)18-11-10-14-6-2-3-8-16(14)20(13)18/h2-11H,12H2,1H3
InChIKey=IBWBDNBSIFGSLW-UHFFFAOYSA-N
CHEBI:20787
7-bromomethyl-12-methyltetraphene
A member of the class of tetraphenes that is tetraphene in which the hydrogens at positions 7 and 12 are replaced by bromomethyl and methyl groups, respectively.
ANON:ANON
7-(bromomethyl)-12-methyltetraphene
IUPAC:
7-BrMe-12-MeBA
ChEBI:
7-bromomethyl-12-methylbenz[a]anthracene
ChemIDplus:
7-bromomethyl-12-methylbenzanthracene
ChemIDplus:
C20H15Br
ChEBI:
Cc1c2ccccc2c(CBr)c2ccc3ccccc3c12
ChEBI:
InChI=1S/C20H15Br/c1-13-15-7-4-5-9-17(15)19(12-21)18-11-10-14-6-2-3-8-16(14)20(13)18/h2-11H,12H2,1H3
ChEBI:
InChIKey=IBWBDNBSIFGSLW-UHFFFAOYSA-N
ChEBI:
An acridine that has formula C21H27Cl4N3O.
N-(2-chloroethyl)-N'-(6-chloro-2-methoxyacridin-9-yl)-N-ethylpropane-1,3-diamine dihydrochloride
chebi_ontology
C21H27Cl4N3O
Cl[H].Cl[H].CCN(CCCl)CCCNc1c2ccc(Cl)cc2nc2ccc(OC)cc12
ICR 170
InChI=1S/C21H25Cl2N3O.2ClH/c1-3-26(12-9-22)11-4-10-24-21-17-7-5-15(23)13-20(17)25-19-8-6-16(27-2)14-18(19)21;;/h5-8,13-14H,3-4,9-12H2,1-2H3,(H,24,25);2*1H
InChIKey=PWGOWIIEVDAYTC-UHFFFAOYSA-N
N-(2-chloroethyl)-N'-(6-chloro-2-methoxy-9-acridinyl)-N-ethyl-1,3-propanediamine dihydrochloride
acridine mustard
CHEBI:21183
ICR-170
An acridine that has formula C21H27Cl4N3O.
ANON:ANON
N-(2-chloroethyl)-N'-(6-chloro-2-methoxyacridin-9-yl)-N-ethylpropane-1,3-diamine dihydrochloride
IUPAC:
C21H27Cl4N3O
ChEBI:
Cl[H].Cl[H].CCN(CCCl)CCCNc1c2ccc(Cl)cc2nc2ccc(OC)cc12
ChEBI:
ICR 170
ChemIDplus:
InChI=1S/C21H25Cl2N3O.2ClH/c1-3-26(12-9-22)11-4-10-24-21-17-7-5-15(23)13-20(17)25-19-8-6-16(27-2)14-18(19)21;;/h5-8,13-14H,3-4,9-12H2,1-2H3,(H,24,25);2*1H
ChEBI:
InChIKey=PWGOWIIEVDAYTC-UHFFFAOYSA-N
ChEBI:
N-(2-chloroethyl)-N'-(6-chloro-2-methoxy-9-acridinyl)-N-ethyl-1,3-propanediamine dihydrochloride
ChemIDplus:
acridine mustard
ChemIDplus:
An organic chloride salt that has formula C30H31ClN6.
3-(diethylamino)-7-{(E)-[4-(dimethylamino)phenyl]diazenyl}-5-phenylphenazin-5-ium chloride
chebi_ontology
3-(diethylamino)-7-((4-(dimethylamino)phenyl)azo)-5-phenylphenazinium chloride
3-(diethylamino)-7-((p-(dimethylamino)phenyl)azo)-5-phenylphenazinium chloride
C30H31ClN6
InChI=1S/C30H31N6.ClH/c1-5-35(6-2)26-17-19-28-30(21-26)36(25-10-8-7-9-11-25)29-20-23(14-18-27(29)31-28)33-32-22-12-15-24(16-13-22)34(3)4;/h7-21H,5-6H2,1-4H3;1H/q+1;/p-1
InChIKey=XXACTDWGHQXLGW-UHFFFAOYSA-M
Janus Green B
Janus Green V
[Cl-].CCN(CC)c1ccc2nc3ccc(cc3[n+](-c3ccccc3)c2c1)\N=N\c1ccc(cc1)N(C)C
CHEBI:21184
Janus Green B chloride
An organic chloride salt that has formula C30H31ClN6.
ANON:ANON
3-(diethylamino)-7-{(E)-[4-(dimethylamino)phenyl]diazenyl}-5-phenylphenazin-5-ium chloride
IUPAC:
3-(diethylamino)-7-((4-(dimethylamino)phenyl)azo)-5-phenylphenazinium chloride
ChemIDplus:
3-(diethylamino)-7-((p-(dimethylamino)phenyl)azo)-5-phenylphenazinium chloride
ChemIDplus:
C30H31ClN6
ChEBI:
InChI=1S/C30H31N6.ClH/c1-5-35(6-2)26-17-19-28-30(21-26)36(25-10-8-7-9-11-25)29-20-23(14-18-27(29)31-28)33-32-22-12-15-24(16-13-22)34(3)4;/h7-21H,5-6H2,1-4H3;1H/q+1;/p-1
ChEBI:
InChIKey=XXACTDWGHQXLGW-UHFFFAOYSA-M
ChEBI:
Janus Green B
ChemIDplus:
Janus Green V
ChemIDplus:
[Cl-].CCN(CC)c1ccc2nc3ccc(cc3[n+](-c3ccccc3)c2c1)\N=N\c1ccc(cc1)N(C)C
ChEBI:
A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a nitrogen atom, thus creating a C-N bond.
glycosylamine
chebi_ontology
N-glycoside
N-glycosides
N-glycosyl compounds
glycosylamines
CHEBI:21731
N-glycosyl compound
A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a nitrogen atom, thus creating a C-N bond.
ANON:ANON
glycosylamine
IUPAC:
N-glycoside
ChEBI:
N-glycosides
ChEBI:
N-glycosyl compounds
ChEBI:
glycosylamines
IUPAC:
An N-nitroguanidine compound having nitroso and methyl substituents at the N'-position
1-methyl-3-nitro-1-nitrosoguanidine
N-Methyl-N'-nitro-N-nitrosoguanidine
chebi_ontology
1-Methyl-1-nitroso-3-nitroguanidine
1-Methyl-3-nitro-1-nitrosoguanidine
1-Nitroso-3-nitro-1-methylguanidine
C2H5N5O3
CN(N=O)C(=N)N[N+]([O-])=O
InChI=1S/C2H5N5O3/c1-6(5-8)2(3)4-7(9)10/h1H3,(H2,3,4)
InChIKey=VZUNGTLZRAYYDE-UHFFFAOYSA-N
MNG
MNNG
Methylnitronitrosoguanidine
N'-Nitro-N-nitroso-N-methylguanidine
N-Methyl-N',2-dioxohydrazinecarboximidohydrazide 2-oxide
N-Methyl-N-nitroso-N'-nitroguanidine
N-Methyl-N-nitrosonitroguanidin
N-Nitroso-N-methyl-N'-nitroguanidine
CHEBI:21759
N-methyl-N'-nitro-N-nitrosoguanidine
An N-nitroguanidine compound having nitroso and methyl substituents at the N'-position
ANON:ANON
1-methyl-3-nitro-1-nitrosoguanidine
IUPAC:
N-Methyl-N'-nitro-N-nitrosoguanidine
KEGG COMPOUND:
1-Methyl-1-nitroso-3-nitroguanidine
ChemIDplus:
1-Methyl-3-nitro-1-nitrosoguanidine
KEGG COMPOUND:
1-Nitroso-3-nitro-1-methylguanidine
ChemIDplus:
C2H5N5O3
ChEBI:
CN(N=O)C(=N)N[N+]([O-])=O
ChEBI:
InChI=1S/C2H5N5O3/c1-6(5-8)2(3)4-7(9)10/h1H3,(H2,3,4)
ChEBI:
InChIKey=VZUNGTLZRAYYDE-UHFFFAOYSA-N
ChEBI:
MNG
ChemIDplus:
MNNG
ChemIDplus:
Methylnitronitrosoguanidine
KEGG COMPOUND:
N'-Nitro-N-nitroso-N-methylguanidine
ChemIDplus:
N-Methyl-N',2-dioxohydrazinecarboximidohydrazide 2-oxide
NIST Chemistry WebBook:
N-Methyl-N-nitroso-N'-nitroguanidine
ChEBI:
N-Methyl-N-nitroso-N'-nitroguanidine
ChemIDplus:
N-Methyl-N-nitrosonitroguanidin
ChEBI:
N-Nitroso-N-methyl-N'-nitroguanidine
ChemIDplus:
chebi_ontology
CHEBI:22025
S-2-chloroethylcysteine
chebi_ontology
CHEBI:22213
acridines
Any of basic nitrogen compounds (mostly heterocyclic) occurring mostly in the plant kingdom (but not excluding those of animal origin). Amino acids, peptides, proteins, nucleotides, nucleic acids, amino sugars and antibiotics are not normally regarded as alkaloids. By extension, certain neutral compounds biogenetically related to basic alkaloids are included.
Alkaloid
alkaloids
chebi_ontology
Alkaloide
alcaloide
alcaloides
CHEBI:22315
alkaloid
Any of basic nitrogen compounds (mostly heterocyclic) occurring mostly in the plant kingdom (but not excluding those of animal origin). Amino acids, peptides, proteins, nucleotides, nucleic acids, amino sugars and antibiotics are not normally regarded as alkaloids. By extension, certain neutral compounds biogenetically related to basic alkaloids are included.
ANON:ANON
Alkaloid
ChEBI:
alkaloids
IUPAC:
Alkaloide
ChEBI:
alcaloide
ChEBI:
alcaloides
ChEBI:
chebi_ontology
CHEBI:22327
alkyl sulfide
Highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. It could be used as an antineoplastic agent, but it might be very toxic, with carcinogenic, mutagenic, teratogenic, and immunosuppressant actions. It could also be used as a component of poison gases.
chebi_ontology
CHEBI:22333
alkylating agent
Highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. It could be used as an antineoplastic agent, but it might be very toxic, with carcinogenic, mutagenic, teratogenic, and immunosuppressant actions. It could also be used as a component of poison gases.
ANON:ANON
A dicarboxylic acid that has formula C19H20N8O5.
4-aminofolic acid
N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid
chebi_ontology
4-amino-PGA
4-aminopteroylglutamic acid
C19H20N8O5
InChI=1S/C19H20N8O5/c20-15-14-16(27-19(21)26-15)23-8-11(24-14)7-22-10-3-1-9(2-4-10)17(30)25-12(18(31)32)5-6-13(28)29/h1-4,8,12,22H,5-7H2,(H,25,30)(H,28,29)(H,31,32)(H4,20,21,23,26,27)/t12-/m0/s1
InChIKey=TVZGACDUOSZQKY-LBPRGKRZSA-N
N-(4-(((2,4-diamino-6-pteridinyl)methyl)amino)benzoyl)-L-glutamic acid
Nc1nc(N)c2nc(CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cnc2n1
aminopterin
CHEBI:22526
4-aminofolic acid
A dicarboxylic acid that has formula C19H20N8O5.
ANON:ANON
4-aminofolic acid
ChemIDplus:
N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid
IUPAC:
4-amino-PGA
ChemIDplus:
4-aminopteroylglutamic acid
ChemIDplus:
C19H20N8O5
ChEBI:
InChI=1S/C19H20N8O5/c20-15-14-16(27-19(21)26-15)23-8-11(24-14)7-22-10-3-1-9(2-4-10)17(30)25-12(18(31)32)5-6-13(28)29/h1-4,8,12,22H,5-7H2,(H,25,30)(H,28,29)(H,31,32)(H4,20,21,23,26,27)/t12-/m0/s1
ChEBI:
InChIKey=TVZGACDUOSZQKY-LBPRGKRZSA-N
ChEBI:
N-(4-(((2,4-diamino-6-pteridinyl)methyl)amino)benzoyl)-L-glutamic acid
ChemIDplus:
Nc1nc(N)c2nc(CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cnc2n1
ChEBI:
aminopterin
ChemIDplus:
A monoatomic or polyatomic species having one or more elementary charges of the electron.
Anion
anion
chebi_ontology
Anionen
aniones
anions
CHEBI:22563
anion
A monoatomic or polyatomic species having one or more elementary charges of the electron.
ANON:ANON
Anion
ChEBI:
anion
ChEBI:
anion
IUPAC:
Anionen
ChEBI:
aniones
ChEBI:
anions
IUPAC:
chebi_ontology
CHEBI:22681
aziridines
chebi_ontology
benzopyrans
CHEBI:22727
benzopyran
benzopyrans
ChEBI:
A quinone that is a cyclohexadiene which is substituted by two oxo groups.
chebi_ontology
CHEBI:22729
benzoquinones
A quinone that is a cyclohexadiene which is substituted by two oxo groups.
ANON:ANON
boron molecular entity
chebi_ontology
boron compounds
boron molecular entities
CHEBI:22916
boron molecular entity
boron molecular entity
ChEBI:
boron compounds
ChEBI:
boron molecular entities
ChEBI:
A compound derived from a hydrocarbon by replacing a hydrogen atom with a bromine atom.
chebi_ontology
brominated hydrocarbons
bromohydrocarbons
CHEBI:22926
bromohydrocarbon
A compound derived from a hydrocarbon by replacing a hydrogen atom with a bromine atom.
ANON:ANON
brominated hydrocarbons
ChEBI:
bromohydrocarbons
ChEBI:
bromine molecular entity
chebi_ontology
bromine compounds
bromine molecular entities
CHEBI:22928
bromine molecular entity
bromine molecular entity
ChEBI:
bromine compounds
ChEBI:
bromine molecular entities
ChEBI:
chebi_ontology
alkyl bromide
alkyl bromides
bromoalkanes
CHEBI:22929
bromoalkane
alkyl bromide
ChEBI:
alkyl bromides
ChEBI:
bromoalkanes
ChEBI:
An ester of carbamic acid.
chebi_ontology
carbamate esters
carbamates
CHEBI:23003
carbamate ester
An ester of carbamic acid.
ANON:ANON
carbamate esters
ChEBI:
carbamates
ChEBI:
chebi_ontology
chloride salts
chlorides
CHEBI:23114
chloride salt
chloride salts
ChEBI:
chlorides
ChEBI:
A compound derived from a hydrocarbon by replacing a hydrogen atom with a chlorine atom.
chebi_ontology
chlorinated hydrocarbons
chlorohydrocarbons
CHEBI:23115
chlorohydrocarbon
A compound derived from a hydrocarbon by replacing a hydrogen atom with a chlorine atom.
ANON:ANON
chlorinated hydrocarbons
ChEBI:
chlorohydrocarbons
ChEBI:
chebi_ontology
CHEBI:23117
chlorine molecular entity
chloroalkane
chebi_ontology
alkyl chloride
alkyl chlorides
chloroalkanes
CHEBI:23128
chloroalkane
chloroalkane
ChEBI:
alkyl chloride
ChEBI:
alkyl chlorides
ChEBI:
chloroalkanes
ChEBI:
chebi_ontology
CHEBI:23239
chromopeptide
A carbotricyclic compound comprising 5,6,7,9-tetrahydrobenzo[a]heptalene having four methoxy substituents at the 1-, 2-, 3- and 10-positions as well as an oxo group at the 9-position and an acetamido group at the 7-position.
N-(1,2,3,10-tetramethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl)acetamide
chebi_ontology
C22H25NO6
COc1cc2CCC(NC(C)=O)c3cc(=O)c(OC)ccc3-c2c(OC)c1OC
InChI=1S/C22H25NO6/c1-12(24)23-16-8-6-13-10-19(27-3)21(28-4)22(29-5)20(13)14-7-9-18(26-2)17(25)11-15(14)16/h7,9-11,16H,6,8H2,1-5H3,(H,23,24)
InChIKey=IAKHMKGGTNLKSZ-UHFFFAOYSA-N
CHEBI:23359
colchicine
A carbotricyclic compound comprising 5,6,7,9-tetrahydrobenzo[a]heptalene having four methoxy substituents at the 1-, 2-, 3- and 10-positions as well as an oxo group at the 9-position and an acetamido group at the 7-position.
ANON:ANON
N-(1,2,3,10-tetramethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl)acetamide
IUPAC:
C22H25NO6
ChEBI:
COc1cc2CCC(NC(C)=O)c3cc(=O)c(OC)ccc3-c2c(OC)c1OC
ChEBI:
InChI=1S/C22H25NO6/c1-12(24)23-16-8-6-13-10-19(27-3)21(28-4)22(29-5)20(13)14-7-9-18(26-2)17(25)11-15(14)16/h7,9-11,16H,6,8H2,1-5H3,(H,23,24)
ChEBI:
InChIKey=IAKHMKGGTNLKSZ-UHFFFAOYSA-N
ChEBI:
Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
molecular entity
chebi_ontology
entidad molecular
entidades moleculares
entite moleculaire
molecular entities
molekulare Entitaet
CHEBI:23367
molecular entity
Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
ANON:ANON
molecular entity
IUPAC:
entidad molecular
IUPAC:
entidades moleculares
IUPAC:
entite moleculaire
IUPAC:
molecular entities
IUPAC:
molekulare Entitaet
ChEBI:
A metal sulfate compound having copper(2+) as the counterion.
copper(2+) sulfate
copper(II) sulfate
chebi_ontology
CuO4S
CuSO4
Cupric sulfate
InChI=1S/Cu.H2O4S/c;1-5(2,3)4/h;(H2,1,2,3,4)/q+2;/p-2
InChIKey=ARUVKPQLZAKDPS-UHFFFAOYSA-L
[Cu++].[O-]S([O-])(=O)=O
copper sulfate
cupric sulfate anhydrous
CHEBI:23414
copper(2+) sulfate
A metal sulfate compound having copper(2+) as the counterion.
ANON:ANON
copper(2+) sulfate
IUPAC:
copper(II) sulfate
IUPAC:
CuO4S
ChEBI:
CuSO4
IUPAC:
Cupric sulfate
ChemIDplus:
InChI=1S/Cu.H2O4S/c;1-5(2,3)4/h;(H2,1,2,3,4)/q+2;/p-2
ChEBI:
InChIKey=ARUVKPQLZAKDPS-UHFFFAOYSA-L
ChEBI:
[Cu++].[O-]S([O-])(=O)=O
ChEBI:
copper sulfate
ChemIDplus:
cupric sulfate anhydrous
ChemIDplus:
A modified cysteine having either D- or L-configuration.
cysteine derivative
chebi_ontology
CHEBI:23509
cysteine derivative
A modified cysteine having either D- or L-configuration.
ANON:ANON
cysteine derivative
ChEBI:
An epoxide that has formula C4H6O2.
2,2'-bioxirane
chebi_ontology
1,1'-bi[ethylene oxide]
1,2:3,4-butadiene diepoxide
1,2:3,4-dianhydrothreitol
1,2:3,4-diepoxybutane
1,3-butadiene diepoxide
Butadiendioxyd
C1OC1C1CO1
C4H6O2
DEB
InChI=1S/C4H6O2/c1-3(5-1)4-2-6-4/h3-4H,1-2H2
InChIKey=ZFIVKAOQEXOYFY-UHFFFAOYSA-N
bioxirane
butadiene diepoxide
butadiene dioxide
butane diepoxide
dioxybutadiene
CHEBI:23704
diepoxybutane
An epoxide that has formula C4H6O2.
ANON:ANON
2,2'-bioxirane
IUPAC:
1,1'-bi[ethylene oxide]
NIST Chemistry WebBook:
1,2:3,4-butadiene diepoxide
ChemIDplus:
1,2:3,4-dianhydrothreitol
NIST Chemistry WebBook:
1,2:3,4-diepoxybutane
ChemIDplus:
1,3-butadiene diepoxide
NIST Chemistry WebBook:
Butadiendioxyd
ChemIDplus:
C1OC1C1CO1
ChEBI:
C4H6O2
ChEBI:
DEB
NIST Chemistry WebBook:
InChI=1S/C4H6O2/c1-3(5-1)4-2-6-4/h3-4H,1-2H2
ChEBI:
InChIKey=ZFIVKAOQEXOYFY-UHFFFAOYSA-N
ChEBI:
bioxirane
NIST Chemistry WebBook:
butadiene diepoxide
NIST Chemistry WebBook:
butadiene dioxide
NIST Chemistry WebBook:
butane diepoxide
NIST Chemistry WebBook:
dioxybutadiene
ChemIDplus:
A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.
enzyme inhibitor
chebi_ontology
enzyme inhibitors
inhibidor enzimatico
inhibidores enzimaticos
inhibiteur enzymatique
inhibiteurs enzymatiques
CHEBI:23924
enzyme inhibitor
A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.
ANON:ANON
enzyme inhibitor
IUPAC:
enzyme inhibitors
ChEBI:
inhibidor enzimatico
ChEBI:
inhibidores enzimaticos
ChEBI:
inhibiteur enzymatique
ChEBI:
inhibiteurs enzymatiques
ChEBI:
chebi_ontology
CHEBI:23994
ethyl methanesulfonate
A urea compound having ethyl and nitroso substituents in the 1-position.
1-ethyl-1-nitrosourea
chebi_ontology
1-(Aminocarbonyl)-1-ethyl-2-oxohydrazine
1-Ethyl-1-nitrosourea
Aethylnitroso-harnstoff
C3H7N3O2
CCN(N=O)C(N)=O
ENU
Ethyl nitrosourea
InChI=1S/C3H7N3O2/c1-2-6(5-8)3(4)7/h2H2,1H3,(H2,4,7)
InChIKey=FUSGACRLAFQQRL-UHFFFAOYSA-N
N-Ethyl-N-nitroso carbamide
N-Ethyl-N-nitroso-urea
N-Ethylnitrosourea
NEU
CHEBI:23995
N-ethyl-N-nitrosourea
A urea compound having ethyl and nitroso substituents in the 1-position.
ANON:ANON
1-ethyl-1-nitrosourea
IUPAC:
1-(Aminocarbonyl)-1-ethyl-2-oxohydrazine
NIST Chemistry WebBook:
1-Ethyl-1-nitrosourea
ChemIDplus:
Aethylnitroso-harnstoff
ChemIDplus:
C3H7N3O2
ChEBI:
CCN(N=O)C(N)=O
ChEBI:
ENU
ChemIDplus:
Ethyl nitrosourea
ChemIDplus:
InChI=1S/C3H7N3O2/c1-2-6(5-8)3(4)7/h2H2,1H3,(H2,4,7)
ChEBI:
InChIKey=FUSGACRLAFQQRL-UHFFFAOYSA-N
ChEBI:
N-Ethyl-N-nitroso carbamide
ChemIDplus:
N-Ethyl-N-nitroso-urea
ChemIDplus:
N-Ethylnitrosourea
ChemIDplus:
NEU
NIST Chemistry WebBook:
chebi_ontology
CHEBI:23996
ethyl sulfide
chebi_ontology
fluoride salts
fluorides
CHEBI:24060
fluoride salt
fluoride salts
ChEBI:
fluorides
ChEBI:
fluorine molecular entity
chebi_ontology
fluorine compounds
fluorine molecular entities
CHEBI:24062
fluorine molecular entity
fluorine molecular entity
ChEBI:
fluorine compounds
ChEBI:
fluorine molecular entities
ChEBI:
A glycosyl compound resulting from the attachment of a glycosyl group to a non-acyl group RO-, RS-, RSe-, etc. The bond between the glycosyl group and the non-acyl group is called a glycosidic bond. By extension, the terms N-glycosides and C-glycosides are used as class names for glycosylamines and for compounds having a glycosyl group attached to a hydrocarbyl group respectively. These terms are misnomers and should not be used. The preferred terms are glycosylamines and C-glycosyl compounds, respectively.
glycosides
chebi_ontology
O-glycoside
O-glycosides
glycosides
CHEBI:24400
glycoside
A glycosyl compound resulting from the attachment of a glycosyl group to a non-acyl group RO-, RS-, RSe-, etc. The bond between the glycosyl group and the non-acyl group is called a glycosidic bond. By extension, the terms N-glycosides and C-glycosides are used as class names for glycosylamines and for compounds having a glycosyl group attached to a hydrocarbyl group respectively. These terms are misnomers and should not be used. The preferred terms are glycosylamines and C-glycosyl compounds, respectively.
ANON:ANON
glycosides
IUPAC:
O-glycoside
ChEBI:
O-glycosides
ChEBI:
glycosides
ChEBI:
A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
chebi_ontology
CHEBI:24431
chemical entity
A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
ANON:ANON
A role played by the molecular entity or part thereof within a biological context.
chebi_ontology
biological function
CHEBI:24432
biological role
A role played by the molecular entity or part thereof within a biological context.
ANON:ANON
biological function
ChEBI:
A compound derived from an alkane by replacing a hydrogen atom with a halogen atom.
chebi_ontology
alkyl halide
alkyl halides
haloalkanes
CHEBI:24469
haloalkane
A compound derived from an alkane by replacing a hydrogen atom with a halogen atom.
ANON:ANON
alkyl halide
ChEBI:
alkyl halides
ChEBI:
haloalkanes
ChEBI:
halogen molecular entity
chebi_ontology
halogen compounds
halogen molecular entities
CHEBI:24471
halogen molecular entity
halogen molecular entity
ChEBI:
halogen compounds
ChEBI:
halogen molecular entities
ChEBI:
A compound derived from a hydrocarbon by replacing a hydrogen atom with a halogen atom.
chebi_ontology
halogenated hydrocarbons
halohydrocarbons
CHEBI:24472
halohydrocarbon
A compound derived from a hydrocarbon by replacing a hydrogen atom with a halogen atom.
ANON:ANON
halogenated hydrocarbons
ChEBI:
halohydrocarbons
ChEBI:
halogen
halogens
chebi_ontology
Halogene
group 17 elements
group VII elements
halogene
halogenes
halogeno
halogenos
CHEBI:24473
halogen
halogen
IUPAC:
halogens
IUPAC:
Halogene
ChEBI:
group 17 elements
ChEBI:
group VII elements
ChEBI:
halogene
ChEBI:
halogenes
ChEBI:
halogeno
ChEBI:
halogenos
ChEBI:
A cyclic compound having as ring members atoms of carbon and at least of one other element.
chebi_ontology
organic heterocycle
organic heterocyclic compounds
CHEBI:24532
organic heterocyclic compound
A cyclic compound having as ring members atoms of carbon and at least of one other element.
ANON:ANON
organic heterocycle
ChEBI:
organic heterocyclic compounds
ChEBI:
A triamino-1,3,5-triazine that has formula C9H18N6.
N,N,N',N',N'',N''-hexamethyl-1,3,5-triazine-2,4,6-triamine
chebi_ontology
2,4,6-tris(dimethylamino)-1,3,5-triazine
2,4,6-tris(dimethylamino)-s-triazine
C9H18N6
CN(C)c1nc(nc(n1)N(C)C)N(C)C
HMM
Hexalen
Hexastat
InChI=1S/C9H18N6/c1-13(2)7-10-8(14(3)4)12-9(11-7)15(5)6/h1-6H3
InChIKey=UUVWYPNAQBNQJQ-UHFFFAOYSA-N
altretamina
altretamine
altretaminum
CHEBI:24564
hexamethylmelamine
A triamino-1,3,5-triazine that has formula C9H18N6.
ANON:ANON
N,N,N',N',N'',N''-hexamethyl-1,3,5-triazine-2,4,6-triamine
IUPAC:
2,4,6-tris(dimethylamino)-1,3,5-triazine
ChemIDplus:
2,4,6-tris(dimethylamino)-s-triazine
NIST Chemistry WebBook:
C9H18N6
ChEBI:
CN(C)c1nc(nc(n1)N(C)C)N(C)C
ChEBI:
HMM
ChemIDplus:
Hexalen
ChemIDplus:
Hexastat
ChemIDplus:
InChI=1S/C9H18N6/c1-13(2)7-10-8(14(3)4)12-9(11-7)15(5)6/h1-6H3
ChEBI:
InChIKey=UUVWYPNAQBNQJQ-UHFFFAOYSA-N
ChEBI:
altretamina
ChemIDplus:
altretamine
ChemIDplus:
altretaminum
ChemIDplus:
A phosphoramide that has formula C6H18N3OP.
N,N,N',N',N'',N''-hexamethylphosphoric triamide
hexamethylphosphoric triamide
chebi_ontology
C6H18N3OP
CN(C)P(=O)(N(C)C)N(C)C
HEMPA
HMPA
HMPT
HMPTA
Hexamethylphosphoramid
Hexamethylphosphorsaeuretriamid
InChI=1S/C6H18N3OP/c1-7(2)11(10,8(3)4)9(5)6/h1-6H3
InChIKey=GNOIPBMMFNIUFM-UHFFFAOYSA-N
hexamethylorthophosphoric triamide
hexamethylphosphoramide
hexamethylphosphoric acid triamide
phosphoric acid hexamethyltriamide
phosphoric hexamethyltriamide
phosphoric tris(dimethylamide)
CHEBI:24565
hexamethylphosphoric triamide
A phosphoramide that has formula C6H18N3OP.
ANON:ANON
N,N,N',N',N'',N''-hexamethylphosphoric triamide
IUPAC:
hexamethylphosphoric triamide
ChemIDplus:
C6H18N3OP
NIST Chemistry WebBook:
CN(C)P(=O)(N(C)C)N(C)C
ChEBI:
HEMPA
NIST Chemistry WebBook:
HMPA
ChemIDplus:
HMPT
ChemIDplus:
HMPTA
ChemIDplus:
Hexamethylphosphoramid
ChEBI:
Hexamethylphosphorsaeuretriamid
ChEBI:
InChI=1S/C6H18N3OP/c1-7(2)11(10,8(3)4)9(5)6/h1-6H3
ChEBI:
InChIKey=GNOIPBMMFNIUFM-UHFFFAOYSA-N
ChEBI:
hexamethylorthophosphoric triamide
NIST Chemistry WebBook:
hexamethylphosphoramide
ChEBI:
hexamethylphosphoric acid triamide
ChemIDplus:
phosphoric acid hexamethyltriamide
NIST Chemistry WebBook:
phosphoric hexamethyltriamide
NIST Chemistry WebBook:
phosphoric tris(dimethylamide)
NIST Chemistry WebBook:
A methanesulfonate salt resulting from the reaction of equimolar amounts of hycanthone and methanesulfonic acid. It was formerly used as a schistosomicide for individual or mass treatement of infection with Schistosoma haematobium and S. mansoni, but due to its toxicity and concern about possible carcinogenicity, it has been replaced by other drugs such as praziquantel.
1-{[2-(diethylamino)ethyl]amino}-4-(hydroxymethyl)-10H-dibenzo[b,e]thiopyran-10-one methanesulfonate
chebi_ontology
C21H28N2O5S2
CS(O)(=O)=O.CCN(CC)CCNc1ccc(CO)c2sc3ccccc3c(=O)c12
Etrenol
InChI=1S/C20H24N2O2S.CH4O3S/c1-3-22(4-2)12-11-21-16-10-9-14(13-23)20-18(16)19(24)15-7-5-6-8-17(15)25-20;1-5(2,3)4/h5-10,21,23H,3-4,11-13H2,1-2H3;1H3,(H,2,3,4)
InChIKey=LOEQGPPJCCUXEJ-UHFFFAOYSA-N
N,N-diethyl-2-{[4-(hydroxymethyl)-10-oxo-10H-dibenzo[b,e]thiopyran-1-yl]amino}ethanaminium methanesulfonate
N-[2-(diethylamino)ethyl]-4-methoxy-9-oxoxanthene-1-amine monomethanesulfonate
hycanthone methanesulfonate
hycanthone methanesulphonate
hycanthone monomesylate
hycanthone monomethanesulfonate
hycanthone monomethanesulphonate
CHEBI:24624
hycanthone mesylate
A methanesulfonate salt resulting from the reaction of equimolar amounts of hycanthone and methanesulfonic acid. It was formerly used as a schistosomicide for individual or mass treatement of infection with Schistosoma haematobium and S. mansoni, but due to its toxicity and concern about possible carcinogenicity, it has been replaced by other drugs such as praziquantel.
ANON:ANON
1-{[2-(diethylamino)ethyl]amino}-4-(hydroxymethyl)-10H-dibenzo[b,e]thiopyran-10-one methanesulfonate
IUPAC:
C21H28N2O5S2
ChEBI:
CS(O)(=O)=O.CCN(CC)CCNc1ccc(CO)c2sc3ccccc3c(=O)c12
ChEBI:
Etrenol
ChEBI:
InChI=1S/C20H24N2O2S.CH4O3S/c1-3-22(4-2)12-11-21-16-10-9-14(13-23)20-18(16)19(24)15-7-5-6-8-17(15)25-20;1-5(2,3)4/h5-10,21,23H,3-4,11-13H2,1-2H3;1H3,(H,2,3,4)
ChEBI:
InChIKey=LOEQGPPJCCUXEJ-UHFFFAOYSA-N
ChEBI:
N,N-diethyl-2-{[4-(hydroxymethyl)-10-oxo-10H-dibenzo[b,e]thiopyran-1-yl]amino}ethanaminium methanesulfonate
IUPAC:
N-[2-(diethylamino)ethyl]-4-methoxy-9-oxoxanthene-1-amine monomethanesulfonate
ChEBI:
hycanthone methanesulfonate
ChemIDplus:
hycanthone methanesulphonate
ChemIDplus:
hycanthone monomesylate
ChEBI:
hycanthone monomethanesulfonate
ChemIDplus:
hycanthone monomethanesulphonate
ChemIDplus:
A compound consisting of carbon and hydrogen only.
hydrocarbon
hydrocarbons
chebi_ontology
Kohlenwasserstoff
Kohlenwasserstoffe
hidrocarburo
hidrocarburos
hydrocarbure
CHEBI:24632
hydrocarbon
A compound consisting of carbon and hydrogen only.
ANON:ANON
hydrocarbon
IUPAC:
hydrocarbons
IUPAC:
Kohlenwasserstoff
ChEBI:
Kohlenwasserstoffe
ChEBI:
hidrocarburo
IUPAC:
hidrocarburos
IUPAC:
hydrocarbure
IUPAC:
Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
chebi_ontology
CHEBI:24651
hydroxides
Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
ANON:ANON
hydroxyflavanone
chebi_ontology
hydroxyflavanones
CHEBI:24697
hydroxyflavanone
hydroxyflavanone
ChEBI:
hydroxyflavanones
ChEBI:
A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
oxoacid
oxoacids
chebi_ontology
oxacids
oxiacids
oxo acid
oxy-acids
oxyacids
CHEBI:24833
oxoacid
A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
ANON:ANON
oxoacid
IUPAC:
oxoacids
IUPAC:
oxacids
ChEBI:
oxiacids
ChEBI:
oxo acid
ChEBI:
oxy-acids
ChEBI:
oxyacids
ChEBI:
A molecular entity that contains no carbon.
chebi_ontology
anorganische Verbindungen
inorganic compounds
inorganic entity
inorganic molecular entities
inorganics
CHEBI:24835
inorganic molecular entity
A molecular entity that contains no carbon.
ANON:ANON
anorganische Verbindungen
ChEBI:
inorganic compounds
ChEBI:
inorganic entity
ChEBI:
inorganic molecular entities
ChEBI:
inorganics
ChEBI:
chebi_ontology
anorganisches Salz
inorganic salts
CHEBI:24839
inorganic salt
anorganisches Salz
ChEBI:
inorganic salts
ChEBI:
chebi_ontology
inorganic sulfate salts
inorganic sulfates
CHEBI:24840
inorganic sulfate salt
inorganic sulfate salts
ChEBI:
inorganic sulfates
ChEBI:
A role played by a chemical agent which exhibits the capability of occupying space between DNA base pairs due to particular properties in size, shape and charge. Intercalation of chemical compounds in DNA helix can result in replication errors (shift, mutation) or DNA damages.
chebi_ontology
agente intercalante
intercalating agent
intercalating agents
intercalating ligands
intercalators
CHEBI:24853
intercalator
A role played by a chemical agent which exhibits the capability of occupying space between DNA base pairs due to particular properties in size, shape and charge. Intercalation of chemical compounds in DNA helix can result in replication errors (shift, mutation) or DNA damages.
ANON:ANON
agente intercalante
ChEBI:
intercalating agent
ChEBI:
intercalating agents
ChEBI:
intercalating ligands
ChEBI:
intercalators
ChEBI:
Chemical element with atomic number 53.
iodine
chebi_ontology
53I
I
InChI=1S/I
InChIKey=ZCYVEMRRCGMTRW-UHFFFAOYSA-N
Iod
J
Jod
[I]
iode
iodine
iodium
yodo
CHEBI:24859
iodine atom
Chemical element with atomic number 53.
ANON:ANON
iodine
IUPAC:
53I
IUPAC:
I
ChEBI:
I
ChEBI:
InChI=1S/I
ChEBI:
InChIKey=ZCYVEMRRCGMTRW-UHFFFAOYSA-N
ChEBI:
Iod
ChEBI:
J
ChEBI:
Jod
ChEBI:
[I]
ChEBI:
iode
ChEBI:
iodine
ChEBI:
iodium
ChEBI:
yodo
ChEBI:
A salt is an assembly of cations and anions.
salt
chebi_ontology
Salz
Salze
ionic compound
ionic compounds
sal
sales
salts
sel
sels
CHEBI:24866
salt
A salt is an assembly of cations and anions.
ANON:ANON
salt
IUPAC:
Salz
ChEBI:
Salze
ChEBI:
ionic compound
ChEBI:
ionic compounds
ChEBI:
sal
ChEBI:
sales
ChEBI:
salts
ChEBI:
sel
ChEBI:
sels
ChEBI:
chebi_ontology
organic salts
organisches Salz
CHEBI:24868
organic salt
organic salts
ChEBI:
organisches Salz
ChEBI:
A molecular entity having a net electric charge.
Ion
ion
chebi_ontology
Ionen
iones
ions
CHEBI:24870
ion
A molecular entity having a net electric charge.
ANON:ANON
Ion
ChEBI:
ion
ChEBI:
ion
IUPAC:
Ionen
ChEBI:
iones
ChEBI:
ions
ChEBI:
Any alkaloid that has a structure based on an isoquinoline nucleus. They are derived from the amino acids like tyrosine and phenylalanine.
chebi_ontology
isoquinoline alkaloids
CHEBI:24921
isoquinoline alkaloid
Any alkaloid that has a structure based on an isoquinoline nucleus. They are derived from the amino acids like tyrosine and phenylalanine.
ANON:ANON
isoquinoline alkaloids
ChEBI:
chebi_ontology
CHEBI:25223
methanesulfonate ester
chebi_ontology
methoxyflavanones
CHEBI:25240
methoxyflavanone
methoxyflavanones
ChEBI:
A methanesulfonate ester that has formula C2H6O3S.
methyl methanesulfonate
chebi_ontology
C2H6O3S
CB1540
COS(C)(=O)=O
InChI=1S/C2H6O3S/c1-5-6(2,3)4/h1-2H3
InChIKey=MBABOKRGFJTBAE-UHFFFAOYSA-N
MMS
Methanesulfonic acid methyl ester
Methyl mesylate
as-Dimethyl sulfite
CHEBI:25255
methyl methanesulfonate
A methanesulfonate ester that has formula C2H6O3S.
ANON:ANON
methyl methanesulfonate
ChEBI:
methyl methanesulfonate
IUPAC:
C2H6O3S
ChemIDplus:
CB1540
ChEBI:
COS(C)(=O)=O
ChEBI:
InChI=1S/C2H6O3S/c1-5-6(2,3)4/h1-2H3
ChEBI:
InChIKey=MBABOKRGFJTBAE-UHFFFAOYSA-N
ChEBI:
MMS
ChEBI:
Methanesulfonic acid methyl ester
ChemIDplus:
Methyl mesylate
ChemIDplus:
as-Dimethyl sulfite
ChemIDplus:
chebi_ontology
methylxanthines
CHEBI:25348
methylxanthine
methylxanthines
ChEBI:
chebi_ontology
mitomycins
CHEBI:25357
mitomycin
mitomycins
ChEBI:
chebi_ontology
CHEBI:25359
modified amino acid
An ethyl sulfide that has formula C4H8Cl2S.
1-chloro-2-[(2-chloroethyl)sulfanyl]ethane
bis(2-chloroethyl) sulfide
chebi_ontology
1,1'-thiobis(2-chloroethane)
1-chloro-2-[(2-chloroethyl)thio]ethane
C4H8Cl2S
ClCCSCCCl
InChI=1S/C4H8Cl2S/c5-1-3-7-4-2-6/h1-4H2
InChIKey=QKSKPIVNLNLAAV-UHFFFAOYSA-N
Lost
Senfgas
Yperite
bis(2-chloroethyl) sulphide
bis(2-chloroethyl)sulfane
mustard gas
sulfur mustard
CHEBI:25434
bis(2-chloroethyl) sulfide
An ethyl sulfide that has formula C4H8Cl2S.
ANON:ANON
1-chloro-2-[(2-chloroethyl)sulfanyl]ethane
IUPAC:
bis(2-chloroethyl) sulfide
ChemIDplus:
1,1'-thiobis(2-chloroethane)
NIST Chemistry WebBook:
1-chloro-2-[(2-chloroethyl)thio]ethane
IUPAC:
C4H8Cl2S
ChEBI:
ClCCSCCCl
ChEBI:
InChI=1S/C4H8Cl2S/c5-1-3-7-4-2-6/h1-4H2
ChEBI:
InChIKey=QKSKPIVNLNLAAV-UHFFFAOYSA-N
ChEBI:
Lost
NIST Chemistry WebBook:
Senfgas
NIST Chemistry WebBook:
Yperite
NIST Chemistry WebBook:
bis(2-chloroethyl) sulphide
NIST Chemistry WebBook:
bis(2-chloroethyl)sulfane
IUPAC:
mustard gas
ChemIDplus:
sulfur mustard
ChemIDplus:
An agent that increases the frequency of mutations above the normal background level, usually by interacting directly with DNA and causing it damage, including base substitution.
chebi_ontology
mutagene
mutagenes
mutagenic agent
mutageno
mutagenos
mutagens
CHEBI:25435
mutagen
An agent that increases the frequency of mutations above the normal background level, usually by interacting directly with DNA and causing it damage, including base substitution.
ANON:ANON
mutagene
ChEBI:
mutagenes
ChEBI:
mutagenic agent
ChEBI:
mutageno
ChEBI:
mutagenos
ChEBI:
mutagens
ChEBI:
Any benzenoid aromatic compound having a skeleton composed of two ortho-fused benzene rings.
chebi_ontology
CHEBI:25477
naphthalenes
Any benzenoid aromatic compound having a skeleton composed of two ortho-fused benzene rings.
ANON:ANON
nonmetal
chebi_ontology
Nichtmetall
Nichtmetalle
no metal
no metales
non-metal
non-metaux
nonmetal
nonmetals
CHEBI:25585
nonmetal atom
nonmetal
IUPAC:
Nichtmetall
ChEBI:
Nichtmetalle
ChEBI:
no metal
ChEBI:
no metales
ChEBI:
non-metal
ChEBI:
non-metaux
ChEBI:
nonmetal
ChEBI:
nonmetals
ChEBI:
chebi_ontology
organic heteromonocyclic compounds
CHEBI:25693
organic heteromonocyclic compound
organic heteromonocyclic compounds
ChEBI:
chebi_ontology
organic anions
CHEBI:25696
organic anion
organic anions
ChEBI:
An organooxygen compound with formula ROR, where R is not hydrogen.
ether
ethers
chebi_ontology
OR2
[*]O[*]
ethers
CHEBI:25698
ether
An organooxygen compound with formula ROR, where R is not hydrogen.
ANON:ANON
ether
IUPAC:
ethers
IUPAC:
OR2
ChEBI:
[*]O[*]
ChEBI:
ethers
ChEBI:
chebi_ontology
organic ions
CHEBI:25699
organic ion
organic ions
ChEBI:
Compounds of the general formula SO3HOR where R is an organyl group
chebi_ontology
organic sulfates
CHEBI:25704
organic sulfate
Compounds of the general formula SO3HOR where R is an organyl group
ANON:ANON
organic sulfates
ChEBI:
An oxide is a chemical compound of oxygen with other chemical elements.
oxide
chebi_ontology
oxides
CHEBI:25741
oxide
An oxide is a chemical compound of oxygen with other chemical elements.
ANON:ANON
oxide
ChEBI:
oxides
ChEBI:
oxygen molecular entity
chebi_ontology
oxygen molecular entities
CHEBI:25806
oxygen molecular entity
oxygen molecular entity
ChEBI:
oxygen molecular entities
ChEBI:
chebi_ontology
CHEBI:25813
p-N,N-bis(2-chloroethyl)aminophenylvaleric acid
chebi_ontology
CHEBI:25814
p-N,N-bis(2-chloroethyl)amino-D-phenylalanine
chebi_ontology
CHEBI:25816
p-N,N-bis(2-chloroethyl)amino-L-phenylalanine
An organochlorine compound that has formula C12H18Cl2N2.
4-(2-aminoethyl)-N,N-bis(2-chloroethyl)aniline
chebi_ontology
4-(bis(2-chloroethyl)amino)benzeneethanamine
C12H18Cl2N2
CB 3034
InChI=1S/C12H18Cl2N2/c13-6-9-16(10-7-14)12-3-1-11(2-4-12)5-8-15/h1-4H,5-10,15H2
InChIKey=PJKCNYLAFQAJDD-UHFFFAOYSA-N
NCCc1ccc(cc1)N(CCCl)CCCl
p-(bis(2-chloroethyl)amino)phenethylamine
p-N,N-di-(2-chloroethyl)aminophenylethylamine
CHEBI:25818
4-(2-aminoethyl)-N,N-bis(2-chloroethyl)aniline
An organochlorine compound that has formula C12H18Cl2N2.
ANON:ANON
4-(2-aminoethyl)-N,N-bis(2-chloroethyl)aniline
IUPAC:
4-(bis(2-chloroethyl)amino)benzeneethanamine
ChemIDplus:
C12H18Cl2N2
ChEBI:
CB 3034
ChemIDplus:
InChI=1S/C12H18Cl2N2/c13-6-9-16(10-7-14)12-3-1-11(2-4-12)5-8-15/h1-4H,5-10,15H2
ChEBI:
InChIKey=PJKCNYLAFQAJDD-UHFFFAOYSA-N
ChEBI:
NCCc1ccc(cc1)N(CCCl)CCCl
ChEBI:
p-(bis(2-chloroethyl)amino)phenethylamine
ChemIDplus:
p-N,N-di-(2-chloroethyl)aminophenylethylamine
ChemIDplus:
chebi_ontology
CHEBI:25829
p-p'-N,N-di(2-chloroethyl)aminophenoxyphenylalanine
chebi_ontology
CHEBI:25903
peptide antibiotic
chebi_ontology
CHEBI:25985
phenylalanine derivative
Any organic aromatic compound with a structure based on a phenylpropane skeleton. The class includes naturally occurring phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules as well as their semi-synthetic and synthetic analogs. Phenylpropanoids are also precursors of lignin.
chebi_ontology
phenylpropanoids
CHEBI:26004
phenylpropanoid
Any organic aromatic compound with a structure based on a phenylpropane skeleton. The class includes naturally occurring phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules as well as their semi-synthetic and synthetic analogs. Phenylpropanoids are also precursors of lignin.
ANON:ANON
phenylpropanoids
ChEBI:
chebi_ontology
purine alkaloids
CHEBI:26385
purine alkaloid
purine alkaloids
ChEBI:
Any compound containing purine as part of its structure.
chebi_ontology
CHEBI:26401
purines
Any compound containing purine as part of its structure.
ANON:ANON
chebi_ontology
pyrimidine nucleosides
CHEBI:26440
pyrimidine nucleoside
pyrimidine nucleosides
ChEBI:
An addition compound that has formula C12H10O4.
cyclohexa-2,5-diene-1,4-dione--benzene-1,4-diol (1:1)
chebi_ontology
C12H10O4
Chinhydron
InChI=1S/C6H6O2.C6H4O2/c2*7-5-1-2-6(8)4-3-5/h1-4,7-8H;1-4H
InChIKey=BDJXVNRFAQSMAA-UHFFFAOYSA-N
Oc1ccc(O)cc1.O=C1C=CC(=O)C=C1
green hydroquinone
p-benzoquinhydrone
p-benzoquinone--hydroquinone compound (1:1)
CHEBI:26491
quinhydrone
An addition compound that has formula C12H10O4.
ANON:ANON
cyclohexa-2,5-diene-1,4-dione--benzene-1,4-diol (1:1)
IUPAC:
C12H10O4
ChEBI:
Chinhydron
ChemIDplus:
InChI=1S/C6H6O2.C6H4O2/c2*7-5-1-2-6(8)4-3-5/h1-4,7-8H;1-4H
ChEBI:
InChIKey=BDJXVNRFAQSMAA-UHFFFAOYSA-N
ChEBI:
Oc1ccc(O)cc1.O=C1C=CC(=O)C=C1
ChEBI:
green hydroquinone
NIST Chemistry WebBook:
p-benzoquinhydrone
ChemIDplus:
p-benzoquinone--hydroquinone compound (1:1)
NIST Chemistry WebBook:
A class of aromatic heterocyclic compounds each of which contains a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring.
chebi_ontology
CHEBI:26513
quinolines
A class of aromatic heterocyclic compounds each of which contains a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring.
ANON:ANON
rhamnosylglucoside
chebi_ontology
rhamnosylglucosides
CHEBI:26548
rhamnosylglucoside
rhamnosylglucoside
ChEBI:
rhamnosylglucosides
ChEBI:
rutinoside
chebi_ontology
rutinosides
CHEBI:26587
rutinoside
rutinoside
ChEBI:
rutinosides
ChEBI:
Any compound with a 1,3,5-triazine skeleton, in which nitrogen atoms replace carbon at positions 1, 3 and 5 of the core benzene ring structure.
chebi_ontology
s-triazines
CHEBI:26588
1,3,5-triazines
Any compound with a 1,3,5-triazine skeleton, in which nitrogen atoms replace carbon at positions 1, 3 and 5 of the core benzene ring structure.
ANON:ANON
s-triazines
ChEBI:
A sulfite salt that has formula HNaO3S.
sodium hydrogensulfite
chebi_ontology
HNaO3S
InChI=1S/Na.H2O3S/c;1-4(2)3/h;(H2,1,2,3)/q+1;/p-1
InChIKey=DWAQJAXMDSEUJJ-UHFFFAOYSA-M
NaHSO3
Natriumbisulfit
Natriumhydrogensulfit
[Na+].OS([O-])=O
primaeres Natriumsulfit
saures Natriumsulfit
sodium bisulfite
sodium bisulphite
sodium hydrogen sulfite
CHEBI:26709
sodium hydrogensulfite
A sulfite salt that has formula HNaO3S.
ANON:ANON
sodium hydrogensulfite
IUPAC:
HNaO3S
ChEBI:
InChI=1S/Na.H2O3S/c;1-4(2)3/h;(H2,1,2,3)/q+1;/p-1
ChEBI:
InChIKey=DWAQJAXMDSEUJJ-UHFFFAOYSA-M
ChEBI:
NaHSO3
IUPAC:
Natriumbisulfit
ChEBI:
Natriumhydrogensulfit
ChEBI:
[Na+].OS([O-])=O
ChEBI:
primaeres Natriumsulfit
ChEBI:
saures Natriumsulfit
ChEBI:
sodium bisulfite
ChemIDplus:
sodium bisulphite
ChemIDplus:
sodium hydrogen sulfite
ChemIDplus:
chebi_ontology
sodium compounds
sodium molecular entities
CHEBI:26712
sodium molecular entity
sodium compounds
ChEBI:
sodium molecular entities
ChEBI:
Any alkali metal salt having sodium(1+) as the cation.
chebi_ontology
Natriumsalz
Natriumsalze
sodium salts
CHEBI:26714
sodium salt
Any alkali metal salt having sodium(1+) as the cation.
ANON:ANON
Natriumsalz
ChEBI:
Natriumsalze
ChEBI:
sodium salts
ChEBI:
chebi_ontology
CHEBI:26800
styrylquinoline
An ester of an alcohol and sulfuric acid.
chebi_ontology
O4SR2
[*]OS(=O)(=O)O[*]
sulfate ester
sulfuric acid ester
sulfuric acid esters
CHEBI:26819
sulfuric ester
An ester of an alcohol and sulfuric acid.
ANON:ANON
O4SR2
ChEBI:
[*]OS(=O)(=O)O[*]
ChEBI:
sulfate ester
ChEBI:
sulfuric acid ester
ChEBI:
sulfuric acid esters
ChEBI:
Salts and esters of sulfuric acid
sulfates
chebi_ontology
sulfuric acid derivative
sulphates
CHEBI:26820
sulfates
Salts and esters of sulfuric acid
ANON:ANON
sulfates
ChEBI:
sulfuric acid derivative
ChEBI:
sulphates
ChEBI:
Any sulfur molecular entity that involves either covalently bonded or anionic sulfur.
chebi_ontology
sulphides
CHEBI:26822
sulfide
Any sulfur molecular entity that involves either covalently bonded or anionic sulfur.
ANON:ANON
sulphides
ChEBI:
chebi_ontology
CHEBI:26823
sulfites
sulfur molecular entity
chebi_ontology
sulfur molecular entities
CHEBI:26835
sulfur molecular entity
sulfur molecular entity
ChEBI:
sulfur molecular entities
ChEBI:
Any oxacycle having an oxolane (tetrahydrofuran) skeleton.
chebi_ontology
CHEBI:26912
oxolanes
Any oxacycle having an oxolane (tetrahydrofuran) skeleton.
ANON:ANON
An organic tricyclic compound in which at least one of the rings of the tricyclic skeleton contains one or more heteroatoms.
chebi_ontology
heterotricyclic compounds
organic heterotricyclic compounds
CHEBI:26979
organic heterotricyclic compound
An organic tricyclic compound in which at least one of the rings of the tricyclic skeleton contains one or more heteroatoms.
ANON:ANON
heterotricyclic compounds
ChEBI:
organic heterotricyclic compounds
ChEBI:
chebi_ontology
CHEBI:27090
triaziquone
chebi_ontology
trimethylxanthines
CHEBI:27134
trimethylxanthine
trimethylxanthines
ChEBI:
chebi_ontology
heterobicyclic compounds
organic heterobicyclic compounds
CHEBI:27171
organic heterobicyclic compound
heterobicyclic compounds
ChEBI:
organic heterobicyclic compounds
ChEBI:
chebi_ontology
CHEBI:27242
uridines
A carbamate ester that has formula C3H5NO2.
vinyl carbamate
chebi_ontology
C3H5NO2
InChI=1S/C3H5NO2/c1-2-6-3(4)5/h2H,1H2,(H2,4,5)
InChIKey=LVLANIHJQRZTPY-UHFFFAOYSA-N
NC(=O)OC=C
carbamic acid, vinyl ester
ethenyl carbamate
CHEBI:27292
vinyl carbamate
A carbamate ester that has formula C3H5NO2.
ANON:ANON
vinyl carbamate
IUPAC:
C3H5NO2
ChEBI:
InChI=1S/C3H5NO2/c1-2-6-3(4)5/h2H,1H2,(H2,4,5)
ChEBI:
InChIKey=LVLANIHJQRZTPY-UHFFFAOYSA-N
ChEBI:
NC(=O)OC=C
ChEBI:
carbamic acid, vinyl ester
ChemIDplus:
ethenyl carbamate
ChemIDplus:
A mitomycin that has formula C15H18N4O5.
Mitomycin C
[(1aS,8S,8aR,8bS)-6-amino-8a-methoxy-5-methyl-4,7-dioxo-1,1a,2,4,7,8,8a,8b-octahydroazirino[2',3':3,4]pyrrolo[1,2-a]indol-8-yl]methyl carbamate
chebi_ontology
7-Amino-9alpha-methoxymitosane
Ametycine
C15H18N4O5
InChI=1S/C15H18N4O5/c1-5-9(16)12(21)8-6(4-24-14(17)22)15(23-2)13-7(18-13)3-19(15)10(8)11(5)20/h6-7,13,18H,3-4,16H2,1-2H3,(H2,17,22)/t6-,7+,13+,15-/m1/s1
InChIKey=NWIBSHFKIJFRCO-WUDYKRTCSA-N
MMC
Mitocin-C
Mitomycin
Mutamycin
[H][C@]12CN3C4=C([C@@H](COC(N)=O)[C@@]3(OC)[C@@]1([H])N2)C(=O)C(N)=C(C)C4=O
CHEBI:27504
mitomycin C
A mitomycin that has formula C15H18N4O5.
ANON:ANON
Mitomycin C
KEGG COMPOUND:
[(1aS,8S,8aR,8bS)-6-amino-8a-methoxy-5-methyl-4,7-dioxo-1,1a,2,4,7,8,8a,8b-octahydroazirino[2',3':3,4]pyrrolo[1,2-a]indol-8-yl]methyl carbamate
IUPAC:
7-Amino-9alpha-methoxymitosane
ChemIDplus:
Ametycine
ChemIDplus:
C15H18N4O5
KEGG COMPOUND:
InChI=1S/C15H18N4O5/c1-5-9(16)12(21)8-6(4-24-14(17)22)15(23-2)13-7(18-13)3-19(15)10(8)11(5)20/h6-7,13,18H,3-4,16H2,1-2H3,(H2,17,22)/t6-,7+,13+,15-/m1/s1
ChEBI:
InChIKey=NWIBSHFKIJFRCO-WUDYKRTCSA-N
ChEBI:
MMC
ChemIDplus:
Mitocin-C
ChemIDplus:
Mitomycin
KEGG COMPOUND:
Mutamycin
ChemIDplus:
[H][C@]12CN3C4=C([C@@H](COC(N)=O)[C@@]3(OC)[C@@]1([H])N2)C(=O)C(N)=C(C)C4=O
ChEBI:
An actinomycin that has formula C62H86N12O16.
2-amino-4,6-dimethyl-3-oxo-1-N,9-N-bis-[(18aS)-10c,14,17-trimethyl-5,8,12,15,18-pentaoxo-6c,13t-di(propan-2-yl)-18ar-hexadecahydro-1H-pyrrolo[2,1-i][1,4,7,10,13]oxatetraazacyclohexadecin-9c-yl]-3H-phenoxazine-1,9-dicarboxamide
Actinomycin D
chebi_ontology
2-amino-N,N'-bis(hexadecahydro-2,5,9-trimethyl-6,13-bis(1-methylethyl)-1,4,7,11,14-pentaoxo-1H-pyrrolo(2,1-i)(1,4,7,10,13)oxatetra-azacyclohexadecin-10-yl)-4,6-dimethyl-3-oxo-3H-phenoxazine-1,9-dicarboxamide
ActD
C62H86N12O16
Dactinomycin
InChI=1S/C62H86N12O16/c1-27(2)42-59(84)73-23-17-19-36(73)57(82)69(13)25-38(75)71(15)48(29(5)6)61(86)88-33(11)44(55(80)65-42)67-53(78)35-22-21-31(9)51-46(35)64-47-40(41(63)50(77)32(10)52(47)90-51)54(79)68-45-34(12)89-62(87)49(30(7)8)72(16)39(76)26-70(14)58(83)37-20-18-24-74(37)60(85)43(28(3)4)66-56(45)81/h21-22,27-30,33-34,36-37,42-45,48-49H,17-20,23-26,63H2,1-16H3,(H,65,80)(H,66,81)(H,67,78)(H,68,79)/t33-,34-,36+,37+,42-,43-,44+,45+,48+,49+/m1/s1
InChIKey=RJURFGZVJUQBHK-IIXSONLDSA-N
[H][C@@]12CCCN1C(=O)[C@H](NC(=O)[C@@H](NC(=O)c1ccc(C)c3oc4c(C)c(=O)c(N)c(C(=O)N[C@H]5[C@@H](C)OC(=O)[C@H](C(C)C)N(C)C(=O)CN(C)C(=O)[C@]6([H])CCCN6C(=O)[C@H](NC5=O)C(C)C)c4nc13)[C@@H](C)OC(=O)[C@H](C(C)C)N(C)C(=O)CN(C)C2=O)C(C)C
actinomycin C1
actinomycin IV
CHEBI:27666
actinomycin D
An actinomycin that has formula C62H86N12O16.
ANON:ANON
2-amino-4,6-dimethyl-3-oxo-1-N,9-N-bis-[(18aS)-10c,14,17-trimethyl-5,8,12,15,18-pentaoxo-6c,13t-di(propan-2-yl)-18ar-hexadecahydro-1H-pyrrolo[2,1-i][1,4,7,10,13]oxatetraazacyclohexadecin-9c-yl]-3H-phenoxazine-1,9-dicarboxamide
IUPAC:
Actinomycin D
KEGG COMPOUND:
2-amino-N,N'-bis(hexadecahydro-2,5,9-trimethyl-6,13-bis(1-methylethyl)-1,4,7,11,14-pentaoxo-1H-pyrrolo(2,1-i)(1,4,7,10,13)oxatetra-azacyclohexadecin-10-yl)-4,6-dimethyl-3-oxo-3H-phenoxazine-1,9-dicarboxamide
ChemIDplus:
ActD
ChEBI:
C62H86N12O16
KEGG COMPOUND:
Dactinomycin
KEGG COMPOUND:
InChI=1S/C62H86N12O16/c1-27(2)42-59(84)73-23-17-19-36(73)57(82)69(13)25-38(75)71(15)48(29(5)6)61(86)88-33(11)44(55(80)65-42)67-53(78)35-22-21-31(9)51-46(35)64-47-40(41(63)50(77)32(10)52(47)90-51)54(79)68-45-34(12)89-62(87)49(30(7)8)72(16)39(76)26-70(14)58(83)37-20-18-24-74(37)60(85)43(28(3)4)66-56(45)81/h21-22,27-30,33-34,36-37,42-45,48-49H,17-20,23-26,63H2,1-16H3,(H,65,80)(H,66,81)(H,67,78)(H,68,79)/t33-,34-,36+,37+,42-,43-,44+,45+,48+,49+/m1/s1
ChEBI:
InChIKey=RJURFGZVJUQBHK-IIXSONLDSA-N
ChEBI:
[H][C@@]12CCCN1C(=O)[C@H](NC(=O)[C@@H](NC(=O)c1ccc(C)c3oc4c(C)c(=O)c(N)c(C(=O)N[C@H]5[C@@H](C)OC(=O)[C@H](C(C)C)N(C)C(=O)CN(C)C(=O)[C@]6([H])CCCN6C(=O)[C@H](NC5=O)C(C)C)c4nc13)[C@@H](C)OC(=O)[C@H](C(C)C)N(C)C(=O)CN(C)C2=O)C(C)C
ChEBI:
actinomycin C1
ChEBI:
actinomycin IV
ChemIDplus:
A trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7.
1,3,7-trimethyl-3,7-dihydro-1H-purine-2,6-dione
CAFFEINE
Caffeine
chebi_ontology
1,3,7-trimethyl-2,6-dioxopurine
1,3,7-trimethylpurine-2,6-dione
1,3,7-trimethylxanthine
1-methyltheobromine
3,7-Dihydro-1,3,7-trimethyl-1H-purin-2,6-dion
7-methyltheophylline
C8H10N4O2
Cn1cnc2n(C)c(=O)n(C)c(=O)c12
Coffein
InChI=1S/C8H10N4O2/c1-10-4-9-6-5(10)7(13)12(3)8(14)11(6)2/h4H,1-3H3
InChIKey=RYYVLZVUVIJVGH-UHFFFAOYSA-N
Koffein
Thein
anhydrous caffeine
cafeina
cafeine
guaranine
mateina
methyltheobromine
teina
theine
CHEBI:27732
caffeine
A trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7.
ANON:ANON
1,3,7-trimethyl-3,7-dihydro-1H-purine-2,6-dione
IUPAC:
CAFFEINE
PDBeChem:
Caffeine
KEGG COMPOUND:
1,3,7-trimethyl-2,6-dioxopurine
ChemIDplus:
1,3,7-trimethylpurine-2,6-dione
IUPHAR:
1,3,7-trimethylxanthine
NIST Chemistry WebBook:
1-methyltheobromine
ChemIDplus:
3,7-Dihydro-1,3,7-trimethyl-1H-purin-2,6-dion
NIST Chemistry WebBook:
7-methyltheophylline
NIST Chemistry WebBook:
C8H10N4O2
KEGG COMPOUND:
Cn1cnc2n(C)c(=O)n(C)c(=O)c12
ChEBI:
Coffein
ChemIDplus:
InChI=1S/C8H10N4O2/c1-10-4-9-6-5(10)7(13)12(3)8(14)11(6)2/h4H,1-3H3
ChEBI:
InChIKey=RYYVLZVUVIJVGH-UHFFFAOYSA-N
ChEBI:
Koffein
ChemIDplus:
Thein
ChemIDplus:
anhydrous caffeine
KEGG DRUG:
cafeina
ChemIDplus:
cafeine
ChEBI:
guaranine
IUPHAR:
mateina
ChemIDplus:
methyltheobromine
IUPHAR:
teina
ChEBI:
theine
NIST Chemistry WebBook:
A chloroethane that has formula C2H4Cl2.
1,2-DICHLOROETHANE
1,2-Dichloroethane
1,2-dichloroethane
chebi_ontology
1,2-DCE
1,2-Dichloraethan
Aethylenchlorid
Aethylendichlorid
C2H4Cl2
ClCCCl
DCE
Dutch liquid
EDC
Ethylene dichloride
Glycol dichloride
InChI=1S/C2H4Cl2/c3-1-2-4/h1-2H2
InChIKey=WSLDOOZREJYCGB-UHFFFAOYSA-N
alpha,beta-dichloroethane
ethane dichloride
ethylene chloride
CHEBI:27789
1,2-dichloroethane
A chloroethane that has formula C2H4Cl2.
ANON:ANON
1,2-DICHLOROETHANE
PDBeChem:
1,2-Dichloroethane
KEGG COMPOUND:
1,2-dichloroethane
IUPAC:
1,2-DCE
NIST Chemistry WebBook:
1,2-Dichloraethan
ChEBI:
Aethylenchlorid
ChEBI:
Aethylendichlorid
ChEBI:
C2H4Cl2
KEGG COMPOUND:
ClCCCl
ChEBI:
DCE
ChemIDplus:
Dutch liquid
KEGG COMPOUND:
EDC
ChemIDplus:
Ethylene dichloride
KEGG COMPOUND:
Glycol dichloride
KEGG COMPOUND:
InChI=1S/C2H4Cl2/c3-1-2-4/h1-2H2
ChEBI:
InChIKey=WSLDOOZREJYCGB-UHFFFAOYSA-N
ChEBI:
alpha,beta-dichloroethane
NIST Chemistry WebBook:
ethane dichloride
ChemIDplus:
ethylene chloride
ChemIDplus:
A platinum-containing anticancer drug that interacts with, and forms cross-links between, DNA and proteins. It is used as a neoplasm inhibitor to treat solid tumours, primarily of the testis and ovary.
(SP-4-2)-diamminedichloridoplatinum
(SP-4-2)-diamminedichloroplatinum
Cisplatin
cis-diamminedichloridoplatinum(II)
cis-diamminedichloroplatinum(II)
chebi_ontology
Briplatin
Cismaplat
Cl2H6N2Pt
H6Cl2N2Pt
InChI=1S/2ClH.2H3N.Pt/h2*1H;2*1H3;/q;;;;+2/p-2
InChIKey=LXZZYRPGZAFOLE-UHFFFAOYSA-L
Lederplatin
Neoplatin
Peyrone's chloride
Peyrone's salt
Platamine
Platinex
Platinol
Randa
[H][N]([H])([H])[Pt](Cl)(Cl)[N]([H])([H])[H]
cis-DDP
cis-[PtCl2(NH3)2]
cis-diamminedichloroplatinum
cis-diammineplatinum(II) dichloride
cis-dichlorodiammineplatinum(II)
cis-platin
cisplatin
cisplatine
cisplatino
cisplatinum
CHEBI:27899
cisplatin
A platinum-containing anticancer drug that interacts with, and forms cross-links between, DNA and proteins. It is used as a neoplasm inhibitor to treat solid tumours, primarily of the testis and ovary.
ANON:ANON
(SP-4-2)-diamminedichloridoplatinum
IUPAC:
(SP-4-2)-diamminedichloroplatinum
IUPAC:
Cisplatin
KEGG COMPOUND:
cis-diamminedichloridoplatinum(II)
IUPAC:
cis-diamminedichloroplatinum(II)
IUPAC:
Briplatin
ChemIDplus:
Cismaplat
DrugBank:
Cl2H6N2Pt
ChEBI:
H6Cl2N2Pt
KEGG COMPOUND:
InChI=1S/2ClH.2H3N.Pt/h2*1H;2*1H3;/q;;;;+2/p-2
ChEBI:
InChIKey=LXZZYRPGZAFOLE-UHFFFAOYSA-L
ChEBI:
Lederplatin
DrugBank:
Neoplatin
DrugBank:
Peyrone's chloride
ChemIDplus:
Peyrone's salt
ChEBI:
Platamine
DrugBank:
Platinex
DrugBank:
Platinol
KEGG DRUG:
Randa
DrugBank:
[H][N]([H])([H])[Pt](Cl)(Cl)[N]([H])([H])[H]
ChEBI:
cis-DDP
ChemIDplus:
cis-[PtCl2(NH3)2]
MolBase:
cis-diamminedichloroplatinum
ChemIDplus:
cis-diammineplatinum(II) dichloride
ChemIDplus:
cis-dichlorodiammineplatinum(II)
ChemIDplus:
cis-platin
ChEBI:
cisplatin
ChemIDplus:
cisplatine
ChemIDplus:
cisplatino
ChemIDplus:
cisplatinum
ChemIDplus:
A 1,3,5-triazine that has formula C9H12N6.
2,4,6-tri(aziridin-1-yl)-1,3,5-triazine
tretamine
chebi_ontology
2,4,6-tri(1-aziridinyl)-1,3,5-triazine
2,4,6-tris(1-aziridinyl)-1,3,5-triazine
2,4,6-tris(1-aziridinyl)-s-triazine
2,4,6-tris(aziridin-1-yl)-1,3,5-triazine
C1CN1c1nc(nc(n1)N1CC1)N1CC1
C9H12N6
InChI=1S/C9H12N6/c1-2-13(1)7-10-8(14-3-4-14)12-9(11-7)15-5-6-15/h1-6H2
InChIKey=IUCJMVBFZDHPDX-UHFFFAOYSA-N
TEM
Triethylenemelamine
Trisaziridinyltriazine
CHEBI:27919
tretamine
A 1,3,5-triazine that has formula C9H12N6.
ANON:ANON
2,4,6-tri(aziridin-1-yl)-1,3,5-triazine
IUPAC:
tretamine
ChemIDplus:
2,4,6-tri(1-aziridinyl)-1,3,5-triazine
NIST Chemistry WebBook:
2,4,6-tris(1-aziridinyl)-1,3,5-triazine
NIST Chemistry WebBook:
2,4,6-tris(1-aziridinyl)-s-triazine
NIST Chemistry WebBook:
2,4,6-tris(aziridin-1-yl)-1,3,5-triazine
ChEBI:
C1CN1c1nc(nc(n1)N1CC1)N1CC1
ChEBI:
C9H12N6
KEGG COMPOUND:
InChI=1S/C9H12N6/c1-2-13(1)7-10-8(14-3-4-14)12-9(11-7)15-5-6-15/h1-6H2
ChEBI:
InChIKey=IUCJMVBFZDHPDX-UHFFFAOYSA-N
ChEBI:
TEM
ChEBI:
Triethylenemelamine
KEGG COMPOUND:
Trisaziridinyltriazine
KEGG COMPOUND:
A 2-carbon sulfoxide in which the sulfur atom has two methyl substituents.
(methanesulfinyl)methane
DIMETHYL SULFOXIDE
Dimethyl sulfoxide
dimethyl sulfoxide
chebi_ontology
(CH3)2SO
C2H6OS
CS(C)=O
DMSO
Dimethylsulfoxid
InChI=1S/C2H6OS/c1-4(2)3/h1-2H3
InChIKey=IAZDPXIOMUYVGZ-UHFFFAOYSA-N
S(O)Me2
dimethyl sulfoxide
dimethyl sulfur oxide
dimethyl sulphoxide
dimethyli sulfoxidum
dimethylsulfoxyde
dimetil sulfoxido
dmso
methylsulfinylmethane
sulfinylbis(methane)
CHEBI:28262
dimethyl sulfoxide
A 2-carbon sulfoxide in which the sulfur atom has two methyl substituents.
ANON:ANON
(methanesulfinyl)methane
IUPAC:
DIMETHYL SULFOXIDE
PDBeChem:
Dimethyl sulfoxide
KEGG COMPOUND:
dimethyl sulfoxide
IUPAC:
dimethyl sulfoxide
UniProt:
(CH3)2SO
NIST Chemistry WebBook:
C2H6OS
KEGG COMPOUND:
CS(C)=O
ChEBI:
DMSO
KEGG COMPOUND:
Dimethylsulfoxid
ChEBI:
InChI=1S/C2H6OS/c1-4(2)3/h1-2H3
ChEBI:
InChIKey=IAZDPXIOMUYVGZ-UHFFFAOYSA-N
ChEBI:
S(O)Me2
ChEBI:
dimethyl sulfoxide
ChemIDplus:
dimethyl sulfur oxide
NIST Chemistry WebBook:
dimethyl sulphoxide
ChemIDplus:
dimethyli sulfoxidum
ChemIDplus:
dimethylsulfoxyde
ChemIDplus:
dimetil sulfoxido
ChemIDplus:
dmso
IUPAC:
methylsulfinylmethane
ChemIDplus:
sulfinylbis(methane)
ChemIDplus:
A bromoalkane that has formula C2H4Br2.
1,2-Dibromoethane
1,2-dibromoethane
chebi_ontology
BrCCBr
C2H4Br2
DBE
EDB
Ethylene dibromide
InChI=1S/C2H4Br2/c3-1-2-4/h1-2H2
InChIKey=PAAZPARNPHGIKF-UHFFFAOYSA-N
alpha,beta-dibromoethane
alpha,omega-dibromoethane
ethylene bromide
sym-Dibromoethane
CHEBI:28534
1,2-dibromoethane
A bromoalkane that has formula C2H4Br2.
ANON:ANON
1,2-Dibromoethane
KEGG COMPOUND:
1,2-dibromoethane
IUPAC:
BrCCBr
ChEBI:
C2H4Br2
KEGG COMPOUND:
DBE
NIST Chemistry WebBook:
EDB
NIST Chemistry WebBook:
Ethylene dibromide
KEGG COMPOUND:
InChI=1S/C2H4Br2/c3-1-2-4/h1-2H2
ChEBI:
InChIKey=PAAZPARNPHGIKF-UHFFFAOYSA-N
ChEBI:
alpha,beta-dibromoethane
NIST Chemistry WebBook:
alpha,omega-dibromoethane
ChemIDplus:
ethylene bromide
NIST Chemistry WebBook:
sym-Dibromoethane
ChemIDplus:
A metal fluoride salt with a Na(+) counterion.
Sodium fluoride
sodium fluoride
chebi_ontology
FNa
InChI=1S/FH.Na/h1H;/q;+1/p-1
InChIKey=PUZPDOWCWNUUKD-UHFFFAOYSA-M
Na.F
NaF
[F-].[Na+]
CHEBI:28741
sodium fluoride
A metal fluoride salt with a Na(+) counterion.
ANON:ANON
Sodium fluoride
KEGG COMPOUND:
sodium fluoride
IUPAC:
FNa
ChEBI:
InChI=1S/FH.Na/h1H;/q;+1/p-1
ChEBI:
InChIKey=PUZPDOWCWNUUKD-UHFFFAOYSA-M
ChEBI:
Na.F
KEGG COMPOUND:
NaF
IUPAC:
[F-].[Na+]
ChEBI:
A disaccharide derivative that consists of hesperetin substituted by a 6-O-(alpha-L-rhamnopyranosyl)-beta-D-glucopyranosyl moiety at position 7 via a glycosidic linkage.
(2S)-5-hydroxy-2-(3-hydroxy-4-methoxyphenyl)-4-oxo-3,4-dihydro-2H-chromen-7-yl 6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside
Hesperidin
hesperidin
chebi_ontology
(S)-(-)-hesperidin
C28H34O15
COc1ccc(cc1O)[C@@H]1CC(=O)c2c(O)cc(O[C@@H]3O[C@H](CO[C@@H]4O[C@@H](C)[C@H](O)[C@@H](O)[C@H]4O)[C@@H](O)[C@H](O)[C@H]3O)cc2O1
Cirantin
Ciratin
Hesperetin 7-O-rutinoside
Hesperidoside
InChI=1S/C28H34O15/c1-10-21(32)23(34)25(36)27(40-10)39-9-19-22(33)24(35)26(37)28(43-19)41-12-6-14(30)20-15(31)8-17(42-18(20)7-12)11-3-4-16(38-2)13(29)5-11/h3-7,10,17,19,21-30,32-37H,8-9H2,1-2H3/t10-,17-,19+,21-,22+,23+,24-,25+,26+,27+,28+/m0/s1
InChIKey=QUQPHWDTPGMPEX-QJBIFVCTSA-N
CHEBI:28775
hesperidin
A disaccharide derivative that consists of hesperetin substituted by a 6-O-(alpha-L-rhamnopyranosyl)-beta-D-glucopyranosyl moiety at position 7 via a glycosidic linkage.
ANON:ANON
(2S)-5-hydroxy-2-(3-hydroxy-4-methoxyphenyl)-4-oxo-3,4-dihydro-2H-chromen-7-yl 6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside
IUPAC:
Hesperidin
KEGG COMPOUND:
hesperidin
UniProt:
(S)-(-)-hesperidin
ChemIDplus:
C28H34O15
KEGG COMPOUND:
COc1ccc(cc1O)[C@@H]1CC(=O)c2c(O)cc(O[C@@H]3O[C@H](CO[C@@H]4O[C@@H](C)[C@H](O)[C@@H](O)[C@H]4O)[C@@H](O)[C@H](O)[C@H]3O)cc2O1
ChEBI:
Cirantin
ChemIDplus:
Ciratin
KEGG COMPOUND:
Hesperetin 7-O-rutinoside
KEGG COMPOUND:
Hesperidoside
ChemIDplus:
InChI=1S/C28H34O15/c1-10-21(32)23(34)25(36)27(40-10)39-9-19-22(33)24(35)26(37)28(43-19)41-12-6-14(30)20-15(31)8-17(42-18(20)7-12)11-3-4-16(38-2)13(29)5-11/h3-7,10,17,19,21-30,32-37H,8-9H2,1-2H3/t10-,17-,19+,21-,22+,23+,24-,25+,26+,27+,28+/m0/s1
ChEBI:
InChIKey=QUQPHWDTPGMPEX-QJBIFVCTSA-N
ChEBI:
A nitrogen mustard that has formula C14H19Cl2NO2.
4-{4-[bis(2-chloroethyl)amino]phenyl}butanoic acid
CHLORAMBUCIL
Chlorambucil
chebi_ontology
4-(p-bis(beta-chloroethyl)aminophenyl)butyric acid
4-[p-[bis(2-chloroethyl)amino]phenyl]butyric acid
Ambochlorin
C14H19Cl2NO2
InChI=1S/C14H19Cl2NO2/c15-8-10-17(11-9-16)13-6-4-12(5-7-13)2-1-3-14(18)19/h4-7H,1-3,8-11H2,(H,18,19)
InChIKey=JCKYGMPEJWAADB-UHFFFAOYSA-N
Leukeran
N,N-di-2-chloroethyl-gamma-p-aminophenylbutyric acid
OC(=O)CCCc1ccc(cc1)N(CCCl)CCCl
chloraminophen
gamma-[p-di(2-chloroethyl)aminophenyl]butyric acid
phenylbutyric acid nitrogen mustard
CHEBI:28830
chlorambucil
A nitrogen mustard that has formula C14H19Cl2NO2.
ANON:ANON
4-{4-[bis(2-chloroethyl)amino]phenyl}butanoic acid
IUPAC:
CHLORAMBUCIL
PDBeChem:
Chlorambucil
KEGG DRUG:
4-(p-bis(beta-chloroethyl)aminophenyl)butyric acid
NIST Chemistry WebBook:
4-[p-[bis(2-chloroethyl)amino]phenyl]butyric acid
NIST Chemistry WebBook:
Ambochlorin
NIST Chemistry WebBook:
C14H19Cl2NO2
KEGG DRUG:
InChI=1S/C14H19Cl2NO2/c15-8-10-17(11-9-16)13-6-4-12(5-7-13)2-1-3-14(18)19/h4-7H,1-3,8-11H2,(H,18,19)
ChEBI:
InChIKey=JCKYGMPEJWAADB-UHFFFAOYSA-N
ChEBI:
Leukeran
NIST Chemistry WebBook:
N,N-di-2-chloroethyl-gamma-p-aminophenylbutyric acid
NIST Chemistry WebBook:
OC(=O)CCCc1ccc(cc1)N(CCCl)CCCl
ChEBI:
chloraminophen
ChemIDplus:
gamma-[p-di(2-chloroethyl)aminophenyl]butyric acid
NIST Chemistry WebBook:
phenylbutyric acid nitrogen mustard
ChemIDplus:
Members of the class of flavans with a 3,4-dihydro-2-aryl-2H-1-benzopyran-4-one skeleton and its substituted derivatives.
chebi_ontology
2,3-dihydroflavones
[*]c1c([*])c([*])c(c([*])c1[*])C1([*])Oc2c([*])c([*])c([*])c([*])c2C(=O)C1([*])[*]
a flavanone
CHEBI:28863
flavanones
Members of the class of flavans with a 3,4-dihydro-2-aryl-2H-1-benzopyran-4-one skeleton and its substituted derivatives.
ANON:ANON
2,3-dihydroflavones
ChEBI:
[*]c1c([*])c([*])c(c([*])c1[*])C1([*])Oc2c([*])c([*])c([*])c([*])c2C(=O)C1([*])[*]
ChEBI:
a flavanone
UniProt:
A phenylalanine derivative comprising L-phenylalanine having [bis(2-chloroethyl)amino group at the 4-position on the phenyl ring.
4-[bis(2-chloroethyl)amino]-L-phenylalanine
chebi_ontology
3-(p-(Bis(2-chloroethyl)amino)phenyl)-L-alanine
3-p-(Di(2-chloroethyl)amino)-phenyl-L-alanine
4-(Bis(2-chloroethyl)amino)-L-phenylalanine
C13H18Cl2N2O2
InChI=1S/C13H18Cl2N2O2/c14-5-7-17(8-6-15)11-3-1-10(2-4-11)9-12(16)13(18)19/h1-4,12H,5-9,16H2,(H,18,19)/t12-/m0/s1
InChIKey=SGDBTWWWUNNDEQ-LBPRGKRZSA-N
L-3-(p-(Bis(2-chloroethyl)amino)phenyl)alanine
L-PAM
L-Phenylalanine mustard
L-Sarcolysine
N[C@@H](Cc1ccc(cc1)N(CCCl)CCCl)C(O)=O
Phenylalanine mustard
Phenylalanine nitrogen mustard
melfalano
melphalan
melphalanum
p-Bis(beta-chloroethyl)aminophenylalanine
p-Di-(2-chloroethyl)amino-L-phenylalanine
p-L-Sarcolysin
p-N,N-bis(2-chloroethyl)amino-L-phenylalanine
p-N-Bis(2-chloroethyl)amino-L-phenylalanine
CHEBI:28876
melphalan
A phenylalanine derivative comprising L-phenylalanine having [bis(2-chloroethyl)amino group at the 4-position on the phenyl ring.
ANON:ANON
4-[bis(2-chloroethyl)amino]-L-phenylalanine
IUPAC:
3-(p-(Bis(2-chloroethyl)amino)phenyl)-L-alanine
ChemIDplus:
3-p-(Di(2-chloroethyl)amino)-phenyl-L-alanine
ChemIDplus:
4-(Bis(2-chloroethyl)amino)-L-phenylalanine
ChemIDplus:
C13H18Cl2N2O2
ChEBI:
InChI=1S/C13H18Cl2N2O2/c14-5-7-17(8-6-15)11-3-1-10(2-4-11)9-12(16)13(18)19/h1-4,12H,5-9,16H2,(H,18,19)/t12-/m0/s1
ChEBI:
InChIKey=SGDBTWWWUNNDEQ-LBPRGKRZSA-N
ChEBI:
L-3-(p-(Bis(2-chloroethyl)amino)phenyl)alanine
ChemIDplus:
L-PAM
ChemIDplus:
L-Phenylalanine mustard
ChemIDplus:
L-Sarcolysine
ChemIDplus:
N[C@@H](Cc1ccc(cc1)N(CCCl)CCCl)C(O)=O
ChEBI:
Phenylalanine mustard
ChemIDplus:
Phenylalanine nitrogen mustard
ChemIDplus:
melfalano
ChemIDplus:
melphalan
KEGG DRUG:
melphalanum
ChemIDplus:
p-Bis(beta-chloroethyl)aminophenylalanine
ChemIDplus:
p-Di-(2-chloroethyl)amino-L-phenylalanine
ChemIDplus:
p-L-Sarcolysin
ChemIDplus:
p-N,N-bis(2-chloroethyl)amino-L-phenylalanine
ChEBI:
p-N-Bis(2-chloroethyl)amino-L-phenylalanine
ChemIDplus:
A methanesulfonate ester that is butane-1,4-diol in which the hydrogens of the hydroxy groups are replaced by methanesulfonyl groups. An alkylating antineoplastic agent, it is used for the treatment of chronic myeloid leukemia (although it has been largely replaced by newer drugs). It is also used as an insect sterilant.
Busulfan
butane-1,4-diyl dimethanesulfonate
chebi_ontology
1,4-Bis(methanesulfonoxy)butane
1,4-Butanediol dimethanesulfonate
1,4-Dimesyloxybutane
1,4-Dimethanesulfonoxybutane
Bisulfex
C6H14O6S2
CS(=O)(=O)OCCCCOS(C)(=O)=O
InChI=1S/C6H14O6S2/c1-13(7,8)11-5-3-4-6-12-14(2,9)10/h3-6H2,1-2H3
InChIKey=COVZYZSDYWQREU-UHFFFAOYSA-N
Leucosulfan
Mablin
Mielucin
Misulban
Mitostan
Myeloleukon
Myleran
Tetramethylene bis(methanesulfonate)
busulfan
busulfano
busulfanum
CHEBI:28901
busulfan
A methanesulfonate ester that is butane-1,4-diol in which the hydrogens of the hydroxy groups are replaced by methanesulfonyl groups. An alkylating antineoplastic agent, it is used for the treatment of chronic myeloid leukemia (although it has been largely replaced by newer drugs). It is also used as an insect sterilant.
ANON:ANON
Busulfan
KEGG DRUG:
butane-1,4-diyl dimethanesulfonate
IUPAC:
1,4-Bis(methanesulfonoxy)butane
ChemIDplus:
1,4-Butanediol dimethanesulfonate
ChemIDplus:
1,4-Dimesyloxybutane
ChemIDplus:
1,4-Dimethanesulfonoxybutane
ChemIDplus:
Bisulfex
ChEBI:
C6H14O6S2
ChEBI:
CS(=O)(=O)OCCCCOS(C)(=O)=O
ChEBI:
InChI=1S/C6H14O6S2/c1-13(7,8)11-5-3-4-6-12-14(2,9)10/h3-6H2,1-2H3
ChEBI:
InChIKey=COVZYZSDYWQREU-UHFFFAOYSA-N
ChEBI:
Leucosulfan
ChEBI:
Mablin
ChEBI:
Mielucin
ChEBI:
Misulban
ChEBI:
Mitostan
ChEBI:
Myeloleukon
ChEBI:
Myleran
KEGG DRUG:
Tetramethylene bis(methanesulfonate)
ChemIDplus:
busulfan
WHO MedNet:
busulfano
WHO MedNet:
busulfanum
WHO MedNet:
A benzophenanthridine alkaloid that has formula C21H20NO4.
2-hydroxy-3,8,9-trimethoxy-5-methylbenzo[c]phenanthridinium
Fagaronine
chebi_ontology
C21H20NO4
COc1cc2c(ccc3c4cc(OC)c(OC)cc4c[n+](C)c23)cc1O
InChI=1S/C21H19NO4/c1-22-11-13-8-19(25-3)20(26-4)9-15(13)14-6-5-12-7-17(23)18(24-2)10-16(12)21(14)22/h5-11H,1-4H3/p+1
InChIKey=OOKZVPUCASIEBL-UHFFFAOYSA-O
CHEBI:28954
fagaronine
A benzophenanthridine alkaloid that has formula C21H20NO4.
ANON:ANON
2-hydroxy-3,8,9-trimethoxy-5-methylbenzo[c]phenanthridinium
IUPAC:
Fagaronine
KEGG COMPOUND:
C21H20NO4
KEGG COMPOUND:
COc1cc2c(ccc3c4cc(OC)c(OC)cc4c[n+](C)c23)cc1O
ChEBI:
InChI=1S/C21H19NO4/c1-22-11-13-8-19(25-3)20(26-4)9-15(13)14-6-5-12-7-17(23)18(24-2)10-16(12)21(14)22/h5-11H,1-4H3/p+1
ChEBI:
InChIKey=OOKZVPUCASIEBL-UHFFFAOYSA-O
ChEBI:
The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated.
chebi_ontology
CO2R
[O-]C([*])=O
a carboxylate
carboxylic acid anions
carboxylic anions
CHEBI:29067
carboxylic acid anion
The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated.
ANON:ANON
CO2R
ChEBI:
[O-]C([*])=O
ChEBI:
a carboxylate
UniProt:
carboxylic acid anions
ChEBI:
carboxylic anions
ChEBI:
alkyl sulfate
chebi_ontology
alkyl sulfates
CHEBI:29281
alkyl sulfate
alkyl sulfate
UniProt:
alkyl sulfates
ChEBI:
An ortho- and peri-fused polycyclic arene consisting of five fused benzene rings.
Benzo[a]pyrene
benzo[pqr]tetraphene
chebi_ontology
(B(a)P)
3,4-BP
3,4-Benzopyrene
3,4-Benzpyrene
BP
Benzo(a)pyrene
Benzpyrene
C20H12
InChI=1S/C20H12/c1-2-7-17-15(4-1)12-16-9-8-13-5-3-6-14-10-11-18(17)20(16)19(13)14/h1-12H
InChIKey=FMMWHPNWAFZXNH-UHFFFAOYSA-N
benzo[def]chrysene
c1ccc2c(c1)cc1ccc3cccc4ccc2c1c34
CHEBI:29865
benzo[a]pyrene
An ortho- and peri-fused polycyclic arene consisting of five fused benzene rings.
ANON:ANON
Benzo[a]pyrene
KEGG COMPOUND:
benzo[pqr]tetraphene
IUPAC:
(B(a)P)
ChEBI:
3,4-BP
NIST Chemistry WebBook:
3,4-Benzopyrene
NIST Chemistry WebBook:
3,4-Benzpyrene
NIST Chemistry WebBook:
BP
NIST Chemistry WebBook:
Benzo(a)pyrene
ChemIDplus:
Benzpyrene
KEGG COMPOUND:
C20H12
KEGG COMPOUND:
InChI=1S/C20H12/c1-2-7-17-15(4-1)12-16-9-8-13-5-3-6-14-10-11-18(17)20(16)19(13)14/h1-12H
ChEBI:
InChIKey=FMMWHPNWAFZXNH-UHFFFAOYSA-N
ChEBI:
benzo[def]chrysene
ChEBI:
c1ccc2c(c1)cc1ccc3cccc4ccc2c1c34
ChEBI:
A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom.
Alcohol
alcohols
chebi_ontology
CHOR3
OC([*])([*])[*]
CHEBI:30879
alcohol
A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom.
ANON:ANON
Alcohol
KEGG COMPOUND:
alcohols
IUPAC:
CHOR3
ChEBI:
OC([*])([*])[*]
ChEBI:
A member of the aziridines that has formula C2H5N.
Aziridine
aziridine
chebi_ontology
C1CN1
C2H5N
EI
InChI=1S/C2H5N/c1-2-3-1/h3H,1-2H2
InChIKey=NOWKCMXCCJGMRR-UHFFFAOYSA-N
azacyclopropane
dimethyleneimine
ethyleneimine
ethylenimine
CHEBI:30969
aziridine
A member of the aziridines that has formula C2H5N.
ANON:ANON
Aziridine
KEGG COMPOUND:
aziridine
IUPAC:
C1CN1
ChEBI:
C2H5N
KEGG COMPOUND:
EI
NIST Chemistry WebBook:
InChI=1S/C2H5N/c1-2-3-1/h3H,1-2H2
ChEBI:
InChIKey=NOWKCMXCCJGMRR-UHFFFAOYSA-N
ChEBI:
azacyclopropane
NIST Chemistry WebBook:
dimethyleneimine
NIST Chemistry WebBook:
ethyleneimine
ChemIDplus:
ethylenimine
NIST Chemistry WebBook:
Any cyclic ether in which the oxygen atom forms part of a 3-membered ring.
Epoxide
epoxides
chebi_ontology
Alkene oxide
C2H2OR2
Olefin oxide
an epoxide
epoxides
CHEBI:32955
epoxide
Any cyclic ether in which the oxygen atom forms part of a 3-membered ring.
ANON:ANON
Epoxide
KEGG COMPOUND:
epoxides
IUPAC:
Alkene oxide
KEGG COMPOUND:
C2H2OR2
KEGG COMPOUND:
Olefin oxide
KEGG COMPOUND:
an epoxide
UniProt:
epoxides
ChEBI:
An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
Amide
amides
chebi_ontology
CHEBI:32988
amide
An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
ANON:ANON
Amide
KEGG COMPOUND:
amides
IUPAC:
A member of the boric acids that has formula BH3O3.
BORIC ACID
Boric acid
boric acid
trihydroxidoboron
chebi_ontology
B(OH)3
BH3O3
H3BO3
InChI=1S/BH3O3/c2-1(3)4/h2-4H
InChIKey=KGBXLFKZBHKPEV-UHFFFAOYSA-N
[B(OH)3]
[H]OB(O[H])O[H]
boron trihydroxide
orthoboric acid
CHEBI:33118
boric acid
A member of the boric acids that has formula BH3O3.
ANON:ANON
BORIC ACID
PDBeChem:
Boric acid
KEGG COMPOUND:
boric acid
IUPAC:
trihydroxidoboron
IUPAC:
B(OH)3
NIST Chemistry WebBook:
BH3O3
KEGG COMPOUND:
H3BO3
IUPAC:
InChI=1S/BH3O3/c2-1(3)4/h2-4H
ChEBI:
InChIKey=KGBXLFKZBHKPEV-UHFFFAOYSA-N
ChEBI:
[B(OH)3]
MolBase:
[H]OB(O[H])O[H]
ChEBI:
boron trihydroxide
NIST Chemistry WebBook:
orthoboric acid
NIST Chemistry WebBook:
boron oxoacid
chebi_ontology
boron oxoacids
oxoacids of boron
CHEBI:33145
boron oxoacid
boron oxoacid
ChEBI:
boron oxoacids
ChEBI:
oxoacids of boron
ChEBI:
An assembly consisting of a central atom (usually metallic) to which is attached a surrounding array of other groups of atoms (ligands).
coordination entities
coordination entity
chebi_ontology
coordination compounds
CHEBI:33240
coordination entity
An assembly consisting of a central atom (usually metallic) to which is attached a surrounding array of other groups of atoms (ligands).
ANON:ANON
coordination entities
IUPAC:
coordination entity
IUPAC:
coordination compounds
ChEBI:
chebi_ontology
oxoacid derivatives
CHEBI:33241
oxoacid derivative
oxoacid derivatives
ChEBI:
An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system.
chebi_ontology
organic fundamental parents
organic parent hydrides
CHEBI:33245
organic fundamental parent
An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system.
ANON:ANON
organic fundamental parents
ChEBI:
organic parent hydrides
ChEBI:
A chemical entity constituting the smallest component of an element having the chemical properties of the element.
atom
chebi_ontology
atome
atomo
atoms
atomus
element
elements
CHEBI:33250
atom
atomus
ChEBI:
element
ChEBI:
elements
ChEBI:
A chemical entity constituting the smallest component of an element having the chemical properties of the element.
ANON:ANON
atom
IUPAC:
atome
IUPAC:
atomo
IUPAC:
atoms
ChEBI:
A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
primary amide
primary amides
chebi_ontology
CHEBI:33256
primary amide
A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
ANON:ANON
primary amide
IUPAC:
primary amides
IUPAC:
An organosulfur compound is a compound containing at least one carbon-sulfur bond.
organosulfur compound
chebi_ontology
organosulfur compounds
CHEBI:33261
organosulfur compound
An organosulfur compound is a compound containing at least one carbon-sulfur bond.
ANON:ANON
organosulfur compound
ChEBI:
organosulfur compounds
ChEBI:
An anion consisting of more than one atom.
chebi_ontology
polyatomic anions
CHEBI:33273
polyatomic anion
An anion consisting of more than one atom.
ANON:ANON
polyatomic anions
ChEBI:
A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
chebi_ontology
heteroorganic entities
organoelement compounds
CHEBI:33285
heteroorganic entity
A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
ANON:ANON
heteroorganic entities
ChEBI:
organoelement compounds
ChEBI:
A molecular entity containing one or more atoms of an alkali metal.
chebi_ontology
alkali metal molecular entities
CHEBI:33296
alkali metal molecular entity
A molecular entity containing one or more atoms of an alkali metal.
ANON:ANON
alkali metal molecular entities
ChEBI:
pnictogen molecular entity
chebi_ontology
pnictogen molecular entities
CHEBI:33302
pnictogen molecular entity
pnictogen molecular entity
ChEBI:
pnictogen molecular entities
ChEBI:
Any p-block molecular entity containing a chalcogen.
chalcogen molecular entity
chebi_ontology
chalcogen compounds
chalcogen molecular entities
CHEBI:33304
chalcogen molecular entity
Any p-block molecular entity containing a chalcogen.
ANON:ANON
chalcogen molecular entity
ChEBI:
chalcogen compounds
ChEBI:
chalcogen molecular entities
ChEBI:
An ester of a carboxylic acid.
Carboxylic ester
carboxylic ester
carboxylic esters
chebi_ontology
CO2R2
carboxylic acid esters
CHEBI:33308
carboxylic ester
An ester of a carboxylic acid.
ANON:ANON
Carboxylic ester
KEGG COMPOUND:
carboxylic ester
UniProt:
carboxylic esters
IUPAC:
CO2R2
KEGG COMPOUND:
carboxylic acid esters
ChEBI:
An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
main group elements
chebi_ontology
Hauptgruppenelement
Hauptgruppenelemente
main group element
CHEBI:33318
main group element atom
An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
ANON:ANON
main group elements
IUPAC:
Hauptgruppenelement
ChEBI:
Hauptgruppenelemente
ChEBI:
main group element
ChEBI:
chebi_ontology
oxoacids of sulfur
sulfur oxoacids
CHEBI:33402
sulfur oxoacid
oxoacids of sulfur
ChEBI:
sulfur oxoacids
ChEBI:
sulfur oxoacid derivative
chebi_ontology
sulfur oxoacid derivatives
CHEBI:33424
sulfur oxoacid derivative
sulfur oxoacid derivative
ChEBI:
sulfur oxoacid derivatives
ChEBI:
chalcogen oxoacid
chebi_ontology
chalcogen oxoacids
CHEBI:33484
chalcogen oxoacid
chalcogen oxoacid
ChEBI:
chalcogen oxoacids
ChEBI:
A molecular entity containing one or more atoms of a transition element.
chebi_ontology
transition element molecular entities
transition metal molecular entity
CHEBI:33497
transition element molecular entity
A molecular entity containing one or more atoms of a transition element.
ANON:ANON
transition element molecular entities
ChEBI:
transition metal molecular entity
ChEBI:
An organic derivative of sulfonic acid in which the sulfo group is linked directly to carbon.
chebi_ontology
HO3SR
OS([*])(=O)=O
organosulfonic acids
sulfonic acids
CHEBI:33551
organosulfonic acid
An organic derivative of sulfonic acid in which the sulfo group is linked directly to carbon.
ANON:ANON
HO3SR
ChEBI:
OS([*])(=O)=O
ChEBI:
organosulfonic acids
ChEBI:
sulfonic acids
ChEBI:
sulfonic acid derivative
chebi_ontology
derivatives of sulfonic acid
sulfonic acid derivatives
CHEBI:33552
sulfonic acid derivative
sulfonic acid derivative
ChEBI:
derivatives of sulfonic acid
ChEBI:
sulfonic acid derivatives
ChEBI:
Organic derivatives of sulfonic acid in which the sulfo group is linked directly to carbon of an aryl group.
chebi_ontology
arenesulfonic acids
arylsulfonic acid
arylsulfonic acids
CHEBI:33555
arenesulfonic acid
Organic derivatives of sulfonic acid in which the sulfo group is linked directly to carbon of an aryl group.
ANON:ANON
arenesulfonic acids
ChEBI:
arylsulfonic acid
ChEBI:
arylsulfonic acids
ChEBI:
Any main group element atom belonging to the p-block of the periodic table.
chebi_ontology
p-block element
p-block elements
CHEBI:33560
p-block element atom
Any main group element atom belonging to the p-block of the periodic table.
ANON:ANON
p-block element
ChEBI:
p-block elements
ChEBI:
A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid.
carboxylic acid
carboxylic acids
chebi_ontology
CHO2R
Carbonsaeure
Carbonsaeuren
Karbonsaeure
OC([*])=O
RC(=O)OH
acide carboxylique
acides carboxyliques
acido carboxilico
acidos carboxilicos
CHEBI:33575
carboxylic acid
A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid.
ANON:ANON
carboxylic acid
IUPAC:
carboxylic acids
IUPAC:
CHO2R
ChEBI:
Carbonsaeure
ChEBI:
Carbonsaeuren
ChEBI:
Karbonsaeure
ChEBI:
OC([*])=O
ChEBI:
RC(=O)OH
IUPAC:
acide carboxylique
IUPAC:
acides carboxyliques
IUPAC:
acido carboxilico
IUPAC:
acidos carboxilicos
IUPAC:
A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
chebi_ontology
main group compounds
main group molecular entities
CHEBI:33579
main group molecular entity
A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
ANON:ANON
main group compounds
ChEBI:
main group molecular entities
ChEBI:
chebi_ontology
boron group molecular entities
CHEBI:33581
boron group molecular entity
boron group molecular entities
ChEBI:
carbon group molecular entity
chebi_ontology
carbon group molecular entities
CHEBI:33582
carbon group molecular entity
carbon group molecular entity
ChEBI:
carbon group molecular entities
ChEBI:
chebi_ontology
cyclic compounds
CHEBI:33595
cyclic compound
cyclic compounds
ChEBI:
A cyclic compound having as ring members atoms of the same element only.
homocyclic compound
homocyclic compounds
chebi_ontology
isocyclic compounds
CHEBI:33597
homocyclic compound
A cyclic compound having as ring members atoms of the same element only.
ANON:ANON
homocyclic compound
IUPAC:
homocyclic compounds
IUPAC:
isocyclic compounds
IUPAC:
A cyclic compound in which all of the ring members are carbon atoms.
carbocyclic compound
carbocyclic compounds
chebi_ontology
carbocycle
CHEBI:33598
carbocyclic compound
A cyclic compound in which all of the ring members are carbon atoms.
ANON:ANON
carbocyclic compound
IUPAC:
carbocyclic compounds
IUPAC:
carbocycle
ChEBI:
chebi_ontology
hydrogen compounds
hydrogen molecular entities
CHEBI:33608
hydrogen molecular entity
hydrogen compounds
ChEBI:
hydrogen molecular entities
ChEBI:
chebi_ontology
polycyclic compounds
CHEBI:33635
polycyclic compound
polycyclic compounds
ChEBI:
A molecule that features two fused rings.
chebi_ontology
bicyclic compounds
CHEBI:33636
bicyclic compound
A molecule that features two fused rings.
ANON:ANON
bicyclic compounds
ChEBI:
A polycyclic compound in which two rings have two, and only two, atoms in common. Such compounds have n common faces and 2n common atoms.
ortho-fused polycyclic compounds
chebi_ontology
ortho-fused compounds
CHEBI:33637
ortho-fused compound
A polycyclic compound in which two rings have two, and only two, atoms in common. Such compounds have n common faces and 2n common atoms.
ANON:ANON
ortho-fused polycyclic compounds
IUPAC:
ortho-fused compounds
ChEBI:
A polycyclic compound in which one ring contains two, and only two, atoms in common with each of two or more rings of a contiguous series of rings. Such compounds have n common faces and less than 2n common atoms.
ortho- and peri-fused polycyclic compounds
chebi_ontology
ortho- and peri-fused compounds
CHEBI:33639
ortho- and peri-fused compound
A polycyclic compound in which one ring contains two, and only two, atoms in common with each of two or more rings of a contiguous series of rings. Such compounds have n common faces and less than 2n common atoms.
ANON:ANON
ortho- and peri-fused polycyclic compounds
IUPAC:
ortho- and peri-fused compounds
ChEBI:
A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character.
aromatic compounds
aromatic molecular entity
chebi_ontology
aromatics
aromatische Verbindungen
CHEBI:33655
aromatic compound
A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character.
ANON:ANON
aromatic compounds
IUPAC:
aromatic molecular entity
IUPAC:
aromatics
ChEBI:
aromatische Verbindungen
ChEBI:
Any monocyclic or polycyclic aromatic hydrocarbon.
arene
arenes
chebi_ontology
aromatic hydrocarbons
CHEBI:33658
arene
Any monocyclic or polycyclic aromatic hydrocarbon.
ANON:ANON
arene
IUPAC:
arenes
IUPAC:
aromatic hydrocarbons
IUPAC:
chebi_ontology
organic aromatic compounds
CHEBI:33659
organic aromatic compound
organic aromatic compounds
ChEBI:
chebi_ontology
monocyclic compounds
CHEBI:33661
monocyclic compound
monocyclic compounds
ChEBI:
cyclic hydrocarbon
chebi_ontology
cyclic hydrocarbons
CHEBI:33663
cyclic hydrocarbon
cyclic hydrocarbon
ChEBI:
cyclic hydrocarbons
ChEBI:
polycyclic hydrocarbon
polycyclic hydrocarbons
chebi_ontology
CHEBI:33666
polycyclic hydrocarbon
polycyclic hydrocarbon
IUPAC:
polycyclic hydrocarbons
IUPAC:
heteromonocyclic compound
heteromonocyclic compounds
chebi_ontology
CHEBI:33670
heteromonocyclic compound
heteromonocyclic compound
IUPAC:
heteromonocyclic compounds
IUPAC:
heteropolycyclic compounds
chebi_ontology
polyheterocyclic compounds
CHEBI:33671
heteropolycyclic compound
heteropolycyclic compounds
IUPAC:
polyheterocyclic compounds
ChEBI:
A bicyclic compound in which at least one of the rings contains at least one skeletal heteroatom.
heterobicyclic compounds
chebi_ontology
CHEBI:33672
heterobicyclic compound
A bicyclic compound in which at least one of the rings contains at least one skeletal heteroatom.
ANON:ANON
heterobicyclic compounds
IUPAC:
An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
s-block molecular entity
chebi_ontology
s-block compounds
s-block molecular entities
CHEBI:33674
s-block molecular entity
An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
ANON:ANON
s-block molecular entity
ChEBI:
s-block compounds
ChEBI:
s-block molecular entities
ChEBI:
A p-block molecular entity is a molecular entity containing one or more atoms of a p-block element.
chebi_ontology
p-block compounds
p-block molecular entities
p-block molecular entitiy
CHEBI:33675
p-block molecular entity
A p-block molecular entity is a molecular entity containing one or more atoms of a p-block element.
ANON:ANON
p-block compounds
ChEBI:
p-block molecular entities
ChEBI:
p-block molecular entitiy
ChEBI:
A d-block molecular entity is a molecular entity containing one or more atoms of a d-block element.
d-block molecular entity
chebi_ontology
d-block compounds
d-block molecular entities
CHEBI:33676
d-block molecular entity
A d-block molecular entity is a molecular entity containing one or more atoms of a d-block element.
ANON:ANON
d-block molecular entity
ChEBI:
d-block compounds
ChEBI:
d-block molecular entities
ChEBI:
Hydrides are chemical compounds of hydrogen with other chemical elements.
chebi_ontology
CHEBI:33692
hydrides
Hydrides are chemical compounds of hydrogen with other chemical elements.
ANON:ANON
A macromolecule formed by a living organism.
biopolymer
chebi_ontology
Biopolymere
biomacromolecules
biopolymers
CHEBI:33694
biomacromolecule
A macromolecule formed by a living organism.
ANON:ANON
biopolymer
IUPAC:
Biopolymere
ChEBI:
biomacromolecules
ChEBI:
biopolymers
ChEBI:
chebi_ontology
genetically encoded biomacromolecules
genetically encoded biopolymers
information biomacromolecules
information biopolymers
information macromolecule
information macromolecules
CHEBI:33695
information biomacromolecule
genetically encoded biomacromolecules
ChEBI:
genetically encoded biopolymers
ChEBI:
information biomacromolecules
ChEBI:
information biopolymers
ChEBI:
information macromolecule
ChEBI:
information macromolecules
ChEBI:
A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid.
nucleic acids
chebi_ontology
NA
Nukleinsaeure
Nukleinsaeuren
acide nucleique
acides nucleiques
acido nucleico
acidos nucleicos
CHEBI:33696
nucleic acid
A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid.
ANON:ANON
nucleic acids
IUPAC:
NA
ChEBI:
Nukleinsaeure
ChEBI:
Nukleinsaeuren
ChEBI:
acide nucleique
ChEBI:
acides nucleiques
ChEBI:
acido nucleico
ChEBI:
acidos nucleicos
ChEBI:
A carboxylic acid containing one or more amino groups.
chebi_ontology
Aminocarbonsaeure
Aminokarbonsaeure
Aminosaeure
amino acids
CHEBI:33709
amino acid
A carboxylic acid containing one or more amino groups.
ANON:ANON
Aminocarbonsaeure
ChEBI:
Aminokarbonsaeure
ChEBI:
Aminosaeure
ChEBI:
amino acids
ChEBI:
nickel group molecular entity
chebi_ontology
nickel group molecular entities
CHEBI:33747
nickel group molecular entity
nickel group molecular entity
ChEBI:
nickel group molecular entities
ChEBI:
platinum molecular entity
chebi_ontology
platinum compounds
platinum molecular entities
CHEBI:33749
platinum molecular entity
platinum molecular entity
ChEBI:
platinum compounds
ChEBI:
platinum molecular entities
ChEBI:
An organic compound having at least one hydroxy group attached to a carbon atom.
hydroxy compounds
chebi_ontology
organic alcohol
organic hydroxy compounds
CHEBI:33822
organic hydroxy compound
An organic compound having at least one hydroxy group attached to a carbon atom.
ANON:ANON
hydroxy compounds
IUPAC:
organic alcohol
ChEBI:
organic hydroxy compounds
ChEBI:
chebi_ontology
organic cyclic compounds
CHEBI:33832
organic cyclic compound
organic cyclic compounds
ChEBI:
A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2).
heteroarenes
chebi_ontology
hetarenes
CHEBI:33833
heteroarene
A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2).
ANON:ANON
heteroarenes
IUPAC:
hetarenes
IUPAC:
chebi_ontology
benzenoid aromatic compounds
benzenoid compound
CHEBI:33836
benzenoid aromatic compound
benzenoid aromatic compounds
ChEBI:
benzenoid compound
ChEBI:
An N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents.
Nucleoside
nucleoside
nucleosides
chebi_ontology
C5H9O4R
nucleosides
CHEBI:33838
nucleoside
An N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents.
ANON:ANON
Nucleoside
KEGG COMPOUND:
nucleoside
UniProt:
nucleosides
IUPAC:
C5H9O4R
KEGG COMPOUND:
nucleosides
ChEBI:
A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
macromolecule
chebi_ontology
macromolecules
polymer
polymer molecule
polymers
CHEBI:33839
macromolecule
A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
ANON:ANON
macromolecule
IUPAC:
macromolecules
ChEBI:
polymer
ChEBI:
polymer molecule
IUPAC:
polymers
ChEBI:
A polycyclic aromatic hydrocarbon.
chebi_ontology
PAH
PAHs
polycyclic arenes
polycyclic aromatic hydrocarbons
CHEBI:33848
polycyclic arene
A polycyclic aromatic hydrocarbon.
ANON:ANON
PAH
ChEBI:
PAHs
ChEBI:
polycyclic arenes
ChEBI:
polycyclic aromatic hydrocarbons
ChEBI:
Aromatic amino acid
aromatic amino acid
chebi_ontology
C2H4NO2R
aromatic amino acids
CHEBI:33856
aromatic amino acid
Aromatic amino acid
KEGG COMPOUND:
aromatic amino acid
UniProt:
C2H4NO2R
KEGG COMPOUND:
aromatic amino acids
ChEBI:
chebi_ontology
transition element coordination entities
transition metal coordination compounds
transition metal coordination entities
CHEBI:33861
transition element coordination entity
transition element coordination entities
ChEBI:
transition metal coordination compounds
ChEBI:
transition metal coordination entities
ChEBI:
platinum coordination entity
chebi_ontology
platinum coordination compounds
platinum coordination entities
CHEBI:33862
platinum coordination entity
platinum coordination entity
ChEBI:
platinum coordination compounds
ChEBI:
platinum coordination entities
ChEBI:
chebi_ontology
halide salts
halides
CHEBI:33958
halide salt
halide salts
ChEBI:
halides
ChEBI:
chebi_ontology
CHEBI:34699
diethyl sulfate
A nitrosamine that has formula C4H10N2O.
N-Nitrosodiethylamine
N-ethyl-N-nitrosoethanamine
chebi_ontology
1,1-diethyl-2-oxohydrazine
C4H10N2O
CCN(CC)N=O
DANA
DEN
Diethylnitrosamine
InChI=1S/C4H10N2O/c1-3-6(4-2)5-7/h3-4H2,1-2H3
InChIKey=WBNQDOYYEUMPFS-UHFFFAOYSA-N
N,N-diethylnitrosamine
N,N-diethylnitrosoamine
NDEA
diethylnitrosoamine
CHEBI:34873
N-nitrosodiethylamine
A nitrosamine that has formula C4H10N2O.
ANON:ANON
N-Nitrosodiethylamine
KEGG COMPOUND:
N-ethyl-N-nitrosoethanamine
IUPAC:
1,1-diethyl-2-oxohydrazine
NIST Chemistry WebBook:
C4H10N2O
KEGG COMPOUND:
CCN(CC)N=O
ChEBI:
DANA
NIST Chemistry WebBook:
DEN
NIST Chemistry WebBook:
Diethylnitrosamine
KEGG COMPOUND:
InChI=1S/C4H10N2O/c1-3-6(4-2)5-7/h3-4H2,1-2H3
ChEBI:
InChIKey=WBNQDOYYEUMPFS-UHFFFAOYSA-N
ChEBI:
N,N-diethylnitrosamine
ChemIDplus:
N,N-diethylnitrosoamine
ChemIDplus:
NDEA
KEGG COMPOUND:
diethylnitrosoamine
ChemIDplus:
chebi_ontology
sulfate salts
sulfates
sulphate salts
sulphates
CHEBI:35175
sulfate salt
sulfate salts
ChEBI:
sulfates
ChEBI:
sulphate salts
ChEBI:
sulphates
ChEBI:
A substance that diminishes the rate of a chemical reaction.
inhibitor
chebi_ontology
inhibidor
inhibiteur
inhibitors
CHEBI:35222
inhibitor
A substance that diminishes the rate of a chemical reaction.
ANON:ANON
inhibitor
IUPAC:
inhibidor
ChEBI:
inhibiteur
ChEBI:
inhibitors
ChEBI:
chebi_ontology
fused compounds
fused polycyclic compounds
fused-ring polycyclic compound
fused-ring polycyclic compounds
polycyclic fused-ring compounds
CHEBI:35293
fused compound
fused compounds
ChEBI:
fused polycyclic compounds
ChEBI:
fused-ring polycyclic compound
ChEBI:
fused-ring polycyclic compounds
ChEBI:
polycyclic fused-ring compounds
ChEBI:
A polyclic compound in which all of the ring members are carbon atoms.
chebi_ontology
carbopolycyclic compounds
CHEBI:35294
carbopolycyclic compound
A polyclic compound in which all of the ring members are carbon atoms.
ANON:ANON
carbopolycyclic compounds
ChEBI:
chebi_ontology
homopolycyclic compounds
CHEBI:35295
homopolycyclic compound
homopolycyclic compounds
ChEBI:
chebi_ontology
ortho-fused polycyclic arenes
CHEBI:35296
ortho-fused polycyclic arene
ortho-fused polycyclic arenes
ChEBI:
An ortho-fused polycyclic arene that has formula C22H14.
Dibenz[a,h]anthracene
chebi_ontology
1,2:5,6-Dibenzanthracene
C22H14
DBA
InChI=1S/C22H14/c1-3-7-19-15(5-1)9-11-17-14-22-18(13-21(17)19)12-10-16-6-2-4-8-20(16)22/h1-14H
InChIKey=LHRCREOYAASXPZ-UHFFFAOYSA-N
c1ccc2c(c1)ccc1cc3c(ccc4ccccc34)cc21
CHEBI:35299
dibenz[a,h]anthracene
An ortho-fused polycyclic arene that has formula C22H14.
ANON:ANON
Dibenz[a,h]anthracene
KEGG COMPOUND:
1,2:5,6-Dibenzanthracene
KEGG COMPOUND:
C22H14
KEGG COMPOUND:
DBA
ChemIDplus:
InChI=1S/C22H14/c1-3-7-19-15(5-1)9-11-17-14-22-18(13-21(17)19)12-10-16-6-2-4-8-20(16)22/h1-14H
ChEBI:
InChIKey=LHRCREOYAASXPZ-UHFFFAOYSA-N
ChEBI:
c1ccc2c(c1)ccc1cc3c(ccc4ccccc34)cc21
ChEBI:
chebi_ontology
ortho- and peri-fused polycyclic arenes
CHEBI:35300
ortho- and peri-fused polycyclic arene
ortho- and peri-fused polycyclic arenes
ChEBI:
Any heteroorganic entity containing at least one carbon-nitrogen bond.
organonitrogen compounds
chebi_ontology
organonitrogens
CHEBI:35352
organonitrogen compound
Any heteroorganic entity containing at least one carbon-nitrogen bond.
ANON:ANON
organonitrogen compounds
IUPAC:
organonitrogens
ChEBI:
An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
oxoanion
chebi_ontology
oxoacid anions
oxoanions
CHEBI:35406
oxoanion
An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
ANON:ANON
oxoanion
ChEBI:
oxoacid anions
ChEBI:
oxoanions
ChEBI:
ortho-fused polycyclic hydrocarbon
chebi_ontology
ortho-fused polycyclic hydrocarbons
CHEBI:35427
ortho-fused polycyclic hydrocarbon
ortho-fused polycyclic hydrocarbon
ChEBI:
ortho-fused polycyclic hydrocarbons
ChEBI:
chebi_ontology
alkali metal salts
CHEBI:35479
alkali metal salt
alkali metal salts
ChEBI:
An addition compound contains two or more simpler compounds that can be packed in a definite ratio into a crystal. The term covers donor-acceptor complexes (adducts) and a variety of lattice compounds.
chebi_ontology
addition compounds
CHEBI:35504
addition compound
An addition compound contains two or more simpler compounds that can be packed in a definite ratio into a crystal. The term covers donor-acceptor complexes (adducts) and a variety of lattice compounds.
ANON:ANON
addition compounds
ChEBI:
heterocyclic parent hydrides
chebi_ontology
heterocyclic fundamental parent
heterocyclic organic fundamental parents
organic heterocyclic fundamental parents
CHEBI:35552
heterocyclic organic fundamental parent
heterocyclic parent hydrides
IUPAC:
heterocyclic fundamental parent
ChEBI:
heterocyclic organic fundamental parents
ChEBI:
organic heterocyclic fundamental parents
ChEBI:
chebi_ontology
carbon oxoacids
oxoacids of carbon
CHEBI:35605
carbon oxoacid
carbon oxoacids
ChEBI:
oxoacids of carbon
ChEBI:
An oxoacid containing two carboxy groups.
Dicarboxylic acid
chebi_ontology
C2H2O4R
dicarboxylic acids
CHEBI:35692
dicarboxylic acid
An oxoacid containing two carboxy groups.
ANON:ANON
Dicarboxylic acid
KEGG COMPOUND:
C2H2O4R
ChEBI:
dicarboxylic acids
ChEBI:
A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter.
Ester
chebi_ontology
esters
CHEBI:35701
ester
A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter.
ANON:ANON
Ester
KEGG COMPOUND:
esters
ChEBI:
An ether that has formula C4H10O.
1,1'-oxydiethane
Diethyl ether
chebi_ontology
1,1'-oxybisethane
3-oxapentane
Aether
Anesthetic ether
C4H10O
CCOCC
Diethylaether
Ether
InChI=1S/C4H10O/c1-3-5-4-2/h3-4H2,1-2H3
InChIKey=RTZKZFJDLAIYFH-UHFFFAOYSA-N
Pronarcol
aether
aether pro narcosi
diethyl oxide
ethoxyethane
ethyl ether
ethyl oxide
CHEBI:35702
diethyl ether
An ether that has formula C4H10O.
ANON:ANON
1,1'-oxydiethane
IUPAC:
Diethyl ether
KEGG COMPOUND:
1,1'-oxybisethane
ChemIDplus:
3-oxapentane
ChemIDplus:
Aether
ChEBI:
Anesthetic ether
KEGG COMPOUND:
C4H10O
KEGG COMPOUND:
CCOCC
ChEBI:
Diethylaether
ChEBI:
Ether
KEGG COMPOUND:
InChI=1S/C4H10O/c1-3-5-4-2/h3-4H2,1-2H3
ChEBI:
InChIKey=RTZKZFJDLAIYFH-UHFFFAOYSA-N
ChEBI:
Pronarcol
NIST Chemistry WebBook:
aether
NIST Chemistry WebBook:
aether pro narcosi
ChEBI:
diethyl oxide
ChemIDplus:
ethoxyethane
ChemIDplus:
ethyl ether
ChemIDplus:
ethyl oxide
ChemIDplus:
Compounds having the nitroso group, -NO, attached to carbon, or to another element, most commonly nitrogen or oxygen.
chebi_ontology
nitroso compounds
CHEBI:35800
nitroso compound
Compounds having the nitroso group, -NO, attached to carbon, or to another element, most commonly nitrogen or oxygen.
ANON:ANON
nitroso compounds
ChEBI:
N-Nitroso amines, compounds of the structure R2NNO. Compounds RNHNO are not ordinarily isolable, but they, too, are nitrosamines. The name is a contraction of N-nitrosoamine and, as such, does not require the N locant.
chebi_ontology
N-Nitroso amines
nitrosamines
CHEBI:35803
nitrosamine
N-Nitroso amines, compounds of the structure R2NNO. Compounds RNHNO are not ordinarily isolable, but they, too, are nitrosamines. The name is a contraction of N-nitrosoamine and, as such, does not require the N locant.
ANON:ANON
N-Nitroso amines
IUPAC:
nitrosamines
ChEBI:
A nitrosamine that has formula C2H6N2O.
N-Nitrosodimethylamine
N-methyl-N-nitrosomethanamine
chebi_ontology
1,1-Dimethyl-2-oxohydrazine
C2H6N2O
CN(C)N=O
DMN
Dimethylnitrosamine
Dimethylnitrosoamine
InChI=1S/C2H6N2O/c1-4(2)3-5/h1-2H3
InChIKey=UMFJAHHVKNCGLG-UHFFFAOYSA-N
N,N-Dimethylnitrosamine
CHEBI:35807
N-nitrosodimethylamine
A nitrosamine that has formula C2H6N2O.
ANON:ANON
N-Nitrosodimethylamine
ChemIDplus:
N-Nitrosodimethylamine
KEGG COMPOUND:
N-methyl-N-nitrosomethanamine
IUPAC:
1,1-Dimethyl-2-oxohydrazine
NIST Chemistry WebBook:
C2H6N2O
KEGG COMPOUND:
CN(C)N=O
ChEBI:
DMN
ChemIDplus:
Dimethylnitrosamine
KEGG COMPOUND:
Dimethylnitrosoamine
ChemIDplus:
InChI=1S/C2H6N2O/c1-4(2)3-5/h1-2H3
ChEBI:
InChIKey=UMFJAHHVKNCGLG-UHFFFAOYSA-N
ChEBI:
N,N-Dimethylnitrosamine
ChemIDplus:
Compounds having the structure R2S=O (R =/= H).
sulfoxide
chebi_ontology
sulfoxides
CHEBI:35813
sulfoxide
Compounds having the structure R2S=O (R =/= H).
ANON:ANON
sulfoxide
ChEBI:
sulfoxides
ChEBI:
chebi_ontology
imidazopyrimidines
CHEBI:35875
imidazopyrimidine
imidazopyrimidines
ChEBI:
chebi_ontology
CHEBI:36016
chloroethanes
chebi_ontology
organic chloride salts
CHEBI:36094
organic chloride salt
organic chloride salts
ChEBI:
Compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, derived from aromatic compounds by conversion of an even number of -CH= groups into -C(=O)- groups with any necessary rearrangement of double bonds (polycyclic and heterocyclic analogues are included).
quinone
quinones
chebi_ontology
Chinon
a quinone
quinones
CHEBI:36141
quinone
Compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, derived from aromatic compounds by conversion of an even number of -CH= groups into -C(=O)- groups with any necessary rearrangement of double bonds (polycyclic and heterocyclic analogues are included).
ANON:ANON
quinone
IUPAC:
quinones
IUPAC:
Chinon
ChEBI:
a quinone
UniProt:
quinones
ChEBI:
chebi_ontology
naphthalenesulfonic acids
CHEBI:36336
naphthalenesulfonic acid
naphthalenesulfonic acids
ChEBI:
Any molecular entity consisting of more than one atom.
chebi_ontology
polyatomic entities
CHEBI:36357
polyatomic entity
Any molecular entity consisting of more than one atom.
ANON:ANON
polyatomic entities
ChEBI:
An ion consisting of more than one atom.
chebi_ontology
polyatomic ions
CHEBI:36358
polyatomic ion
An ion consisting of more than one atom.
ANON:ANON
polyatomic ions
ChEBI:
chebi_ontology
saturated heterocyclic parent hydride
saturated heterocyclic parent hydrides
saturated organic heterocyclic parents
CHEBI:36388
saturated organic heterocyclic parent
saturated heterocyclic parent hydride
ChEBI:
saturated heterocyclic parent hydrides
ChEBI:
saturated organic heterocyclic parents
ChEBI:
chebi_ontology
saturated heteromonocyclic parent hydride
saturated heteromonocyclic parent hydrides
saturated organic heteromonocyclic parents
CHEBI:36389
saturated organic heteromonocyclic parent
saturated heteromonocyclic parent hydride
ChEBI:
saturated heteromonocyclic parent hydrides
ChEBI:
saturated organic heteromonocyclic parents
ChEBI:
Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives.
carbonyl compounds
chebi_ontology
CHEBI:36586
carbonyl compound
Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives.
ANON:ANON
carbonyl compounds
IUPAC:
Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element.
oxo compounds
chebi_ontology
organic oxo compounds
CHEBI:36587
organic oxo compound
Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element.
ANON:ANON
oxo compounds
IUPAC:
organic oxo compounds
ChEBI:
An organochlorine compound is a compound containing at least one carbon-chlorine bond.
organochlorine compound
chebi_ontology
chloroorganic compounds
chlororganische Verbindungen
organochlorine compounds
CHEBI:36683
organochlorine compound
An organochlorine compound is a compound containing at least one carbon-chlorine bond.
ANON:ANON
organochlorine compound
ChEBI:
chloroorganic compounds
ChEBI:
chlororganische Verbindungen
ChEBI:
organochlorine compounds
ChEBI:
A compound containing at least one carbon-halogen bond.
chebi_ontology
organohalogen compounds
CHEBI:36684
organohalogen compound
A compound containing at least one carbon-halogen bond.
ANON:ANON
organohalogen compounds
ChEBI:
heterotricyclic compound
heterotricyclic compounds
chebi_ontology
heterotricyclic compounds
CHEBI:36688
heterotricyclic compound
heterotricyclic compound
ChEBI:
heterotricyclic compounds
IUPAC:
heterotricyclic compounds
ChEBI:
A bicyclic compound in which all the ring atoms are carbon.
chebi_ontology
carbobicyclic compounds
CHEBI:36785
carbobicyclic compound
A bicyclic compound in which all the ring atoms are carbon.
ANON:ANON
carbobicyclic compounds
ChEBI:
Two or more cyclic systems (single rings or fused systems) which are directly joined to each other by double or single bonds are named ring assemblies when the number of such direct ring junctions is one less than the number of cyclic systems involved.
ring assemblies
ring assembly
chebi_ontology
CHEBI:36820
ring assembly
Two or more cyclic systems (single rings or fused systems) which are directly joined to each other by double or single bonds are named ring assemblies when the number of such direct ring junctions is one less than the number of cyclic systems involved.
ANON:ANON
ring assemblies
IUPAC:
ring assembly
IUPAC:
An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
organochalcogen compound
chebi_ontology
organochalcogen compounds
CHEBI:36962
organochalcogen compound
An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
ANON:ANON
organochalcogen compound
ChEBI:
organochalcogen compounds
ChEBI:
An organochalcogen compound containing at least one carbon-oxygen bond.
organooxygen compound
chebi_ontology
organooxygen compounds
CHEBI:36963
organooxygen compound
An organochalcogen compound containing at least one carbon-oxygen bond.
ANON:ANON
organooxygen compound
ChEBI:
organooxygen compounds
ChEBI:
amino-acid anion
chebi_ontology
amino acid anions
amino-acid anions
CHEBI:37022
amino-acid anion
amino-acid anion
ChEBI:
amino acid anions
ChEBI:
amino-acid anions
ChEBI:
A compound containing at least one carbon-bromine bond.
chebi_ontology
bromoorganic compound
organobromine compounds
CHEBI:37141
organobromine compound
A compound containing at least one carbon-bromine bond.
ANON:ANON
bromoorganic compound
ChEBI:
organobromine compounds
ChEBI:
An organofluorine compound is a compound containing at least one carbon-fluorine bond.
organofluorine compound
chebi_ontology
fluoroorganic compound
fluoroorganic compounds
fluoroorganics
fluororganische Verbindungen
organofluorine compounds
CHEBI:37143
organofluorine compound
An organofluorine compound is a compound containing at least one carbon-fluorine bond.
ANON:ANON
organofluorine compound
ChEBI:
fluoroorganic compound
ChEBI:
fluoroorganic compounds
ChEBI:
fluoroorganics
ChEBI:
fluororganische Verbindungen
ChEBI:
organofluorine compounds
ChEBI:
chebi_ontology
organic hydrides
CHEBI:37175
organic hydride
organic hydrides
ChEBI:
Any ether in which the oxygen atom forms part of a ring.
cyclic ether
cyclic ethers
epoxy compounds
chebi_ontology
cyclic ethers
epoxy compounds
CHEBI:37407
cyclic ether
Any ether in which the oxygen atom forms part of a ring.
ANON:ANON
cyclic ether
IUPAC:
cyclic ethers
IUPAC:
epoxy compounds
IUPAC:
cyclic ethers
ChEBI:
epoxy compounds
ChEBI:
A molecular entity consisting of two or more chemical elements.
chebi_ontology
chemical compound
heteroatomic molecular entities
CHEBI:37577
heteroatomic molecular entity
A molecular entity consisting of two or more chemical elements.
ANON:ANON
chemical compound
ChEBI:
heteroatomic molecular entities
ChEBI:
chebi_ontology
CHEBI:37578
halide
An aminoacridine that has formula C23H28Cl3N3O.
N(1),N(1)-bis(2-chloroethyl)-N(4)-(6-chloro-2-methoxyacridin-9-yl)pentane-1,4-diamine
quinacrine mustard
chebi_ontology
C23H28Cl3N3O
COc1ccc2nc3cc(Cl)ccc3c(NC(C)CCCN(CCCl)CCCl)c2c1
InChI=1S/C23H28Cl3N3O/c1-16(4-3-11-29(12-9-24)13-10-25)27-23-19-7-5-17(26)14-22(19)28-21-8-6-18(30-2)15-20(21)23/h5-8,14-16H,3-4,9-13H2,1-2H3,(H,27,28)
InChIKey=UKOBAUFLOGFCMV-UHFFFAOYSA-N
CHEBI:37595
quinacrine mustard
An aminoacridine that has formula C23H28Cl3N3O.
ANON:ANON
N(1),N(1)-bis(2-chloroethyl)-N(4)-(6-chloro-2-methoxyacridin-9-yl)pentane-1,4-diamine
IUPAC:
quinacrine mustard
ChemIDplus:
C23H28Cl3N3O
ChEBI:
COc1ccc2nc3cc(Cl)ccc3c(NC(C)CCCN(CCCl)CCCl)c2c1
ChEBI:
InChI=1S/C23H28Cl3N3O/c1-16(4-3-11-29(12-9-24)13-10-25)27-23-19-7-5-17(26)14-22(19)28-21-8-6-18(30-2)15-20(21)23/h5-8,14-16H,3-4,9-13H2,1-2H3,(H,27,28)
ChEBI:
InChIKey=UKOBAUFLOGFCMV-UHFFFAOYSA-N
ChEBI:
Compounds having two beta-haloalkyl groups bound to a nitrogen atom, as in (X-C2H2-C2H2)2NR.
nitrogen mustards
chebi_ontology
nitrogen mustards
CHEBI:37598
nitrogen mustard
Compounds having two beta-haloalkyl groups bound to a nitrogen atom, as in (X-C2H2-C2H2)2NR.
ANON:ANON
nitrogen mustards
IUPAC:
nitrogen mustards
ChEBI:
An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom.
carboxamides
chebi_ontology
CNOR3
[*]C(=O)N([*])[*]
carboxamides
primary carboxamide
CHEBI:37622
carboxamide
An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom.
ANON:ANON
carboxamides
IUPAC:
CNOR3
ChEBI:
[*]C(=O)N([*])[*]
ChEBI:
carboxamides
ChEBI:
primary carboxamide
ChEBI:
sulfuric acid derivative
chebi_ontology
sulfuric acid derivatives
CHEBI:37826
sulfuric acid derivative
sulfuric acid derivative
ChEBI:
sulfuric acid derivatives
ChEBI:
chebi_ontology
azacycloalkanes
CHEBI:37949
azacycloalkane
azacycloalkanes
ChEBI:
chebi_ontology
carbotricyclic compounds
CHEBI:38032
carbotricyclic compound
carbotricyclic compounds
ChEBI:
chebi_ontology
aminonaphthalenes
CHEBI:38034
aminonaphthalene
aminonaphthalenes
ChEBI:
chebi_ontology
mesylate salt
mesylate salts
methanesulfonate salts
CHEBI:38037
methanesulfonate salt
mesylate salt
ChEBI:
mesylate salts
ChEBI:
methanesulfonate salts
ChEBI:
Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms.
chebi_ontology
heterocyclic organonitrogen compounds
organonitrogen heterocyclic compounds
CHEBI:38101
organonitrogen heterocyclic compound
Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms.
ANON:ANON
heterocyclic organonitrogen compounds
ChEBI:
organonitrogen heterocyclic compounds
ChEBI:
Compounds based on a triazine skeleton.
chebi_ontology
CHEBI:38102
triazines
Compounds based on a triazine skeleton.
ANON:ANON
Any organic heterocyclic compound containing at least one ring oxygen atom.
chebi_ontology
heterocyclic organooxygen compounds
organooxygen heterocyclic compounds
oxacycles
CHEBI:38104
oxacycle
Any organic heterocyclic compound containing at least one ring oxygen atom.
ANON:ANON
heterocyclic organooxygen compounds
ChEBI:
organooxygen heterocyclic compounds
ChEBI:
oxacycles
ChEBI:
chebi_ontology
organic heterotetracyclic compounds
CHEBI:38163
organic heterotetracyclic compound
organic heterotetracyclic compounds
ChEBI:
chebi_ontology
organic heteropolycyclic compounds
CHEBI:38166
organic heteropolycyclic compound
organic heteropolycyclic compounds
ChEBI:
chebi_ontology
triamino-1,3,5-triazines
CHEBI:38175
triamino-1,3,5-triazine
triamino-1,3,5-triazines
ChEBI:
chebi_ontology
azirinopyrroloindoles
CHEBI:38303
azirinopyrroloindole
azirinopyrroloindoles
ChEBI:
Any organic heterocyclic compound containing a benzene ring in which two of the C-H fragments have been replaced by isolobal nitrogens (the diazine parent structure).
chebi_ontology
CHEBI:38313
diazines
Any organic heterocyclic compound containing a benzene ring in which two of the C-H fragments have been replaced by isolobal nitrogens (the diazine parent structure).
ANON:ANON
chebi_ontology
1-benzopyrans
CHEBI:38443
1-benzopyran
1-benzopyrans
ChEBI:
A specific group of isoquinoline alkaloids that occur only in higher plants and are constituents mainly of the Papaveraceae family.
chebi_ontology
benzophenanthridine alkaloids
CHEBI:38517
benzophenanthridine alkaloid
A specific group of isoquinoline alkaloids that occur only in higher plants and are constituents mainly of the Papaveraceae family.
ANON:ANON
benzophenanthridine alkaloids
ChEBI:
chebi_ontology
benzophenanthridines
CHEBI:38518
benzophenanthridine
benzophenanthridines
ChEBI:
Any flavonoid with a 3,4-dihydro-2-aryl-2H-1-benzopyran skeleton and its substituted derivatives.
chebi_ontology
CHEBI:38672
flavans
Any flavonoid with a 3,4-dihydro-2-aryl-2H-1-benzopyran skeleton and its substituted derivatives.
ANON:ANON
chebi_ontology
inorganic sodium salts
CHEBI:38702
inorganic sodium salt
inorganic sodium salts
ChEBI:
chebi_ontology
monomethoxyflavanones
CHEBI:38738
monomethoxyflavanone
monomethoxyflavanones
ChEBI:
chebi_ontology
dihydroxyflavanones
CHEBI:38749
dihydroxyflavanone
dihydroxyflavanones
ChEBI:
chebi_ontology
dibenzopyridines
CHEBI:39206
dibenzopyridine
dibenzopyridines
ChEBI:
chebi_ontology
CHEBI:39446
pyrimidine ribonucleosides
Any compound having a pyrimidine as part of its structure.
chebi_ontology
CHEBI:39447
pyrimidines
Any compound having a pyrimidine as part of its structure.
ANON:ANON
Cyclic ketone
cyclic ketones
chebi_ontology
CHEBI:3992
cyclic ketone
Cyclic ketone
KEGG COMPOUND:
cyclic ketones
IUPAC:
chebi_ontology
CHEBI:46789
hydroxyether
A hydroxyether that has formula C3H8O2.
2-METHOXYETHANOL
2-methoxyethanol
chebi_ontology
1-hydroxy-2-methoxyethane
2-hydroxyethyl methyl ether
2-methoxy-1-ethanol
3-oxa-1-butanol
C3H8O2
COCCO
HOCH2CH2OCH3
InChI=1S/C3H8O2/c1-5-3-2-4/h4H,2-3H2,1H3
InChIKey=XNWFRZJHXBZDAG-UHFFFAOYSA-N
Methyl cellosolve
beta-methoxyethanol
methyl oxitol
monomethyl ethylene glycol ether
CHEBI:46790
2-methoxyethanol
A hydroxyether that has formula C3H8O2.
ANON:ANON
2-METHOXYETHANOL
PDBeChem:
2-methoxyethanol
IUPAC:
1-hydroxy-2-methoxyethane
ChemIDplus:
2-hydroxyethyl methyl ether
NIST Chemistry WebBook:
2-methoxy-1-ethanol
ChemIDplus:
3-oxa-1-butanol
ChemIDplus:
C3H8O2
ChEBI:
COCCO
ChEBI:
HOCH2CH2OCH3
NIST Chemistry WebBook:
InChI=1S/C3H8O2/c1-5-3-2-4/h4H,2-3H2,1H3
ChEBI:
InChIKey=XNWFRZJHXBZDAG-UHFFFAOYSA-N
ChEBI:
Methyl cellosolve
ChemIDplus:
beta-methoxyethanol
NIST Chemistry WebBook:
methyl oxitol
ChemIDplus:
monomethyl ethylene glycol ether
ChemIDplus:
chebi_ontology
tetrahydrofuranols
CHEBI:47017
tetrahydrofuranol
tetrahydrofuranols
ChEBI:
chebi_ontology
dihydroxytetrahydrofurans
CHEBI:47019
dihydroxytetrahydrofuran
dihydroxytetrahydrofurans
ChEBI:
chebi_ontology
urea derivatives
CHEBI:47857
ureas
urea derivatives
ChEBI:
Any 1-benzopyran with an aryl substituent at position 2. The term was originally restricted to natural products, but is now also used to describe semi-synthetic and fully synthetic compounds.
Flavonoid
chebi_ontology
2-aryl-1-benzopyran
2-aryl-1-benzopyrans
CHEBI:47916
flavonoid
Any 1-benzopyran with an aryl substituent at position 2. The term was originally restricted to natural products, but is now also used to describe semi-synthetic and fully synthetic compounds.
ANON:ANON
Flavonoid
KEGG COMPOUND:
2-aryl-1-benzopyran
ChEBI:
2-aryl-1-benzopyrans
ChEBI:
Any hydroxyflavanone with a hydroxy substituent at position 3' of the phenyl ring.
chebi_ontology
a 3'-hydroxyflavanone
CHEBI:48024
3'-hydroxyflavanones
Any hydroxyflavanone with a hydroxy substituent at position 3' of the phenyl ring.
ANON:ANON
a 3'-hydroxyflavanone
UniProt:
Esters or salts of methanesulfonic acid.
chebi_ontology
CHEBI:48544
methanesulfonates
Esters or salts of methanesulfonic acid.
ANON:ANON
A sulfur oxoacid that has formula H2O3S.
dihydrogen trioxosulfate
dihydroxidooxidosulfur
sulfurous acid
trioxosulfuric acid
chebi_ontology
H2O3S
H2SO3
InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)
InChIKey=LSNNMFCWUKXFEE-UHFFFAOYSA-N
OS(O)=O
S(O)(OH)2
Sulfite
[SO(OH)2]
acide sulfureux
acido sulfuroso
schweflige Saeure
sulphurous acid
CHEBI:48854
sulfurous acid
A sulfur oxoacid that has formula H2O3S.
ANON:ANON
dihydrogen trioxosulfate
IUPAC:
dihydroxidooxidosulfur
IUPAC:
sulfurous acid
IUPAC:
trioxosulfuric acid
IUPAC:
H2O3S
KEGG COMPOUND:
H2SO3
IUPAC:
InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)
ChEBI:
InChIKey=LSNNMFCWUKXFEE-UHFFFAOYSA-N
ChEBI:
OS(O)=O
ChEBI:
S(O)(OH)2
IUPAC:
Sulfite
KEGG COMPOUND:
[SO(OH)2]
IUPAC:
acide sulfureux
ChEBI:
acido sulfuroso
ChEBI:
schweflige Saeure
ChemIDplus:
sulphurous acid
ChemIDplus:
chebi_ontology
CHEBI:48857
sulfite salt
A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups.
chebi_ontology
organic amino compounds
CHEBI:50047
organic amino compound
A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups.
ANON:ANON
organic amino compounds
ChEBI:
An urea that has formula C2H5N3O2.
1-methyl-1-nitrosourea
chebi_ontology
1-(aminocarbonyl)-1-methyl-2-oxohydrazine
1-nitroso-1-methylurea
C2H5N3O2
CN(N=O)C(N)=O
InChI=1S/C2H5N3O2/c1-5(4-7)2(3)6/h1H3,(H2,3,6)
InChIKey=ZRKWMRDKSOPRRS-UHFFFAOYSA-N
MNU
Methylnitrosoharnstoff
Methylnitrosourea
N-Methyl-N-nitrosoharnstoff
N-Methyl-N-nitrosourea
N-Nitroso-N-methylharnstoff
N-methyl-N-nitrosocarbamide
N-methyl-N-nitrosouree
N-nitroso-N-methylcarbamide
N-nitroso-N-methylurea
N-nitroso-N-methyluree
N-nitrosomethylurea
NMH
NMU
methylnitrosouree
nitrosomethylurea
CHEBI:50102
N-methyl-N-nitrosurea
An urea that has formula C2H5N3O2.
ANON:ANON
1-methyl-1-nitrosourea
IUPAC:
1-(aminocarbonyl)-1-methyl-2-oxohydrazine
NIST Chemistry WebBook:
1-nitroso-1-methylurea
ChemIDplus:
C2H5N3O2
KEGG COMPOUND:
CN(N=O)C(N)=O
ChEBI:
InChI=1S/C2H5N3O2/c1-5(4-7)2(3)6/h1H3,(H2,3,6)
ChEBI:
InChIKey=ZRKWMRDKSOPRRS-UHFFFAOYSA-N
ChEBI:
MNU
ChemIDplus:
Methylnitrosoharnstoff
ChEBI:
Methylnitrosourea
KEGG COMPOUND:
N-Methyl-N-nitrosoharnstoff
ChEBI:
N-Methyl-N-nitrosourea
KEGG COMPOUND:
N-Nitroso-N-methylharnstoff
ChEBI:
N-methyl-N-nitrosocarbamide
ChemIDplus:
N-methyl-N-nitrosouree
ChEBI:
N-nitroso-N-methylcarbamide
NIST Chemistry WebBook:
N-nitroso-N-methylurea
ChemIDplus:
N-nitroso-N-methyluree
ChEBI:
N-nitrosomethylurea
NIST Chemistry WebBook:
NMH
ChemIDplus:
NMU
ChemIDplus:
methylnitrosouree
ChemIDplus:
nitrosomethylurea
NIST Chemistry WebBook:
Any molecular entity that contains carbon.
chebi_ontology
organic compounds
organic entity
organic molecular entities
CHEBI:50860
organic molecular entity
Any molecular entity that contains carbon.
ANON:ANON
organic compounds
ChEBI:
organic entity
ChEBI:
organic molecular entities
ChEBI:
chebi_ontology
azaarenes
CHEBI:50893
azaarene
azaarenes
ChEBI:
A role is particular behaviour which a material entity may exhibit.
chebi_ontology
CHEBI:50906
role
A role is particular behaviour which a material entity may exhibit.
ANON:ANON
Thioxanthene and its substitution derivatives.
chebi_ontology
CHEBI:50930
thioxanthenes
Thioxanthene and its substitution derivatives.
ANON:ANON
A thioxanthen-9-one compound having a methyl substituent at the 1-position and a 2-[(diethylamino)ethyl]amino substituent at the 4-position. Formerly used for the treatment of schistosomiasis. It is a prodrug, being metabolised to hycanthone.
1-{[2-(diethylamino)ethyl]amino}-4-methyl-9H-thioxanthen-9-one
Lucanthone
chebi_ontology
1-((2-(diethylamino)ethyl)amino)-4-methylthioxanthen-9-one
1-diethylaminoethylethylamino-4-methyl-thioxanthenone
1-{[2-(diethylamino)ethyl]amino}-4-methylthioxanthen-9-one
C20H24N2OS
CCN(CC)CCNc1ccc(C)c2sc3ccccc3c(=O)c12
InChI=1S/C20H24N2OS/c1-4-22(5-2)13-12-21-16-11-10-14(3)20-18(16)19(23)15-8-6-7-9-17(15)24-20/h6-11,21H,4-5,12-13H2,1-3H3
InChIKey=FBQPGGIHOFZRGH-UHFFFAOYSA-N
lucanthone
lucanthonum
lucantona
CHEBI:51052
lucanthone
A thioxanthen-9-one compound having a methyl substituent at the 1-position and a 2-[(diethylamino)ethyl]amino substituent at the 4-position. Formerly used for the treatment of schistosomiasis. It is a prodrug, being metabolised to hycanthone.
ANON:ANON
1-{[2-(diethylamino)ethyl]amino}-4-methyl-9H-thioxanthen-9-one
IUPAC:
Lucanthone
KEGG COMPOUND:
1-((2-(diethylamino)ethyl)amino)-4-methylthioxanthen-9-one
ChemIDplus:
1-diethylaminoethylethylamino-4-methyl-thioxanthenone
ChEBI:
1-{[2-(diethylamino)ethyl]amino}-4-methylthioxanthen-9-one
ChEBI:
C20H24N2OS
ChEBI:
C20H24N2OS
KEGG COMPOUND:
CCN(CC)CCNc1ccc(C)c2sc3ccccc3c(=O)c12
ChEBI:
InChI=1S/C20H24N2OS/c1-4-22(5-2)13-12-21-16-11-10-14(3)20-18(16)19(23)15-8-6-7-9-17(15)24-20/h6-11,21H,4-5,12-13H2,1-3H3
ChEBI:
InChIKey=FBQPGGIHOFZRGH-UHFFFAOYSA-N
ChEBI:
lucanthone
ChemIDplus:
lucanthone
WHO MedNet:
lucanthonum
ChemIDplus:
lucantona
ChemIDplus:
chebi_ontology
CHEBI:51067
tetraphenes
chebi_ontology
organic halide salts
CHEBI:51069
organic halide salt
organic halide salts
ChEBI:
A role played by the molecular entity or part thereof within a chemical context.
chebi_ontology
CHEBI:51086
chemical role
A role played by the molecular entity or part thereof within a chemical context.
ANON:ANON
chebi_ontology
Nitrogenous compounds
nitrogen compounds
nitrogen molecular entities
CHEBI:51143
nitrogen molecular entity
Nitrogenous compounds
KEGG COMPOUND:
nitrogen compounds
ChEBI:
nitrogen molecular entities
ChEBI:
diamminedichloridoplatinum
diamminedichloridoplatinum(II)
diamminedichloroplatinum
diamminedichloroplatinum(II)
chebi_ontology
Cl2H6N2Pt
diammine(dichloro)platinum
diammineplatinum dichloride
CHEBI:51214
diamminedichloroplatinum
diamminedichloridoplatinum
IUPAC:
diamminedichloridoplatinum(II)
IUPAC:
diamminedichloroplatinum
IUPAC:
diamminedichloroplatinum(II)
IUPAC:
Cl2H6N2Pt
ChEBI:
diammine(dichloro)platinum
ChEBI:
diammineplatinum dichloride
NIST Chemistry WebBook:
Sulfate salts where the cation is a metal ion.
chebi_ontology
metal sulfates
CHEBI:51336
metal sulfate
Sulfate salts where the cation is a metal ion.
ANON:ANON
metal sulfates
ChEBI:
Acridines which are substituted in any position by one or more amino groups or substituted amino groups.
chebi_ontology
aminoacridines
CHEBI:51803
aminoacridine
Acridines which are substituted in any position by one or more amino groups or substituted amino groups.
ANON:ANON
aminoacridines
ChEBI:
chebi_ontology
organic polycyclic compounds
CHEBI:51958
organic polycyclic compound
organic polycyclic compounds
ChEBI:
chebi_ontology
organic tricyclic compounds
CHEBI:51959
organic tricyclic compound
organic tricyclic compounds
ChEBI:
chebi_ontology
CHEBI:52206
biochemical role
A role played by the molecular entity or part thereof which causes the development of a pathological process.
chebi_ontology
etiopathogenetic agent
etiopathogenetic role
CHEBI:52209
aetiopathogenetic role
A role played by the molecular entity or part thereof which causes the development of a pathological process.
ANON:ANON
etiopathogenetic agent
ChEBI:
etiopathogenetic role
ChEBI:
A cyclic compound having as ring members atoms of at least two different elements.
Heterocyclic compound
chebi_ontology
compuesto heterociclico
compuestos heterociclicos
heterocycle
heterocyclic compounds
CHEBI:5686
heterocyclic compound
A cyclic compound having as ring members atoms of at least two different elements.
ANON:ANON
Heterocyclic compound
KEGG COMPOUND:
compuesto heterociclico
IUPAC:
compuestos heterociclicos
IUPAC:
heterocycle
ChEBI:
heterocyclic compounds
ChEBI:
Hydroxy boron compounds of general formula BxOyHz.
chebi_ontology
CHEBI:59765
boric acids
Hydroxy boron compounds of general formula BxOyHz.
ANON:ANON
Any compound that has a nucleobase as a part.
chebi_ontology
nucleobase-containing compound
nucleobase-containing compounds
nucleobase-containing molecular entities
CHEBI:61120
nucleobase-containing molecular entity
Any compound that has a nucleobase as a part.
ANON:ANON
nucleobase-containing compound
SUBMITTER:
nucleobase-containing compounds
ChEBI:
nucleobase-containing molecular entities
ChEBI:
A carbohydrate derivative arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to an oxygen, carbon, nitrogen or sulfur atom of a separate entity.
chebi_ontology
glycosyl compounds
CHEBI:63161
glycosyl compound
A carbohydrate derivative arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to an oxygen, carbon, nitrogen or sulfur atom of a separate entity.
ANON:ANON
glycosyl compounds
ChEBI:
Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds.
chebi_ontology
carbohydrate derivatives
derivatised carbohydrate
derivatised carbohydrates
derivatized carbohydrate
derivatized carbohydrates
CHEBI:63299
carbohydrate derivative
Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds.
ANON:ANON
carbohydrate derivatives
ChEBI:
derivatised carbohydrate
ChEBI:
derivatised carbohydrates
ChEBI:
derivatized carbohydrate
ChEBI:
derivatized carbohydrates
ChEBI:
A carbohydrate derivative that is formally obtained from a disaccharide.
chebi_ontology
disaccharide derivatives
CHEBI:63353
disaccharide derivative
A carbohydrate derivative that is formally obtained from a disaccharide.
ANON:ANON
disaccharide derivatives
ChEBI:
chebi_ontology
CHEBI:64382
organosulfonate salt
An organic molecular entity containing a single carbon atom (C1).
chebi_ontology
one-carbon compounds
CHEBI:64708
one-carbon compound
An organic molecular entity containing a single carbon atom (C1).
ANON:ANON
one-carbon compounds
ChEBI:
Any organic molecular entity that is acidic and contains carbon in covalent linkage.
chebi_ontology
organic acids
CHEBI:64709
organic acid
Any organic molecular entity that is acidic and contains carbon in covalent linkage.
ANON:ANON
organic acids
ChEBI:
A methanesulfonate ester that is hexane-2,5-diol in which the hydrogens of the hydroxy groups are replaced by methanesulfonyl groups.
hexane-2,5-diyl dimethanesulfonate
chebi_ontology
1,4-bis(methylsulfonyloxy)-1,4-dimethylbutane
1,4-dimethanesulfonoxy-1,4-dimethylbutane
1,4-dimethylbusulfan
1,4-dimethylmyleran
2,5-dimethanesulfomyloxyhexane
2,5-hexanediol dimesylate
2,5-hexanediol dimethylsulfonate
C8H18O6S2
CC(CCC(C)OS(C)(=O)=O)OS(C)(=O)=O
DMM
InChI=1S/C8H18O6S2/c1-7(13-15(3,9)10)5-6-8(2)14-16(4,11)12/h7-8H,5-6H2,1-4H3
InChIKey=JDZNTUQRMDAIRO-UHFFFAOYSA-N
dimethylbusulfan
CHEBI:67107
dimethylmyleran
A methanesulfonate ester that is hexane-2,5-diol in which the hydrogens of the hydroxy groups are replaced by methanesulfonyl groups.
ANON:ANON
hexane-2,5-diyl dimethanesulfonate
IUPAC:
1,4-bis(methylsulfonyloxy)-1,4-dimethylbutane
ChemIDplus:
1,4-dimethanesulfonoxy-1,4-dimethylbutane
ChemIDplus:
1,4-dimethylbusulfan
ChEBI:
1,4-dimethylmyleran
ChEBI:
2,5-dimethanesulfomyloxyhexane
ChemIDplus:
2,5-hexanediol dimesylate
ChEBI:
2,5-hexanediol dimethylsulfonate
ChemIDplus:
C8H18O6S2
ChEBI:
CC(CCC(C)OS(C)(=O)=O)OS(C)(=O)=O
ChEBI:
DMM
ChemIDplus:
InChI=1S/C8H18O6S2/c1-7(13-15(3,9)10)5-6-8(2)14-16(4,11)12/h7-8H,5-6H2,1-4H3
ChEBI:
InChIKey=JDZNTUQRMDAIRO-UHFFFAOYSA-N
ChEBI:
dimethylbusulfan
ChemIDplus:
A molecule that can substitute for a normal nucleobase in nucleic acids.
chebi_ontology
base analog
base analogs
base analogue
base analogues
nucleobase analog
nucleobase analogs
nucleobase analogues
CHEBI:67142
nucleobase analogue
A molecule that can substitute for a normal nucleobase in nucleic acids.
ANON:ANON
base analog
ChEBI:
base analogs
ChEBI:
base analogue
ChEBI:
base analogues
ChEBI:
nucleobase analog
ChEBI:
nucleobase analogs
ChEBI:
nucleobase analogues
ChEBI:
Any organic molecular entity whose stucture is based on derivatives of a phenyl-substituted 1-phenylpropane possessing a C15 or C16 skeleton, or such a structure which is condensed with a C6-C3 lignan precursors. The term is a 'superclass' comprising all members of the classes of flavonoid, isoflavonoid, neoflavonoid, chalcones, dihydrochalcones, aurones, pterocarpan, coumestans, rotenoid, flavonolignan, and flavonoid oligomers. Originally restricted to natural products, the term is also applied to synthetic compounds related to them.
chebi_ontology
flavonoid
CHEBI:72544
flavonoids
Any organic molecular entity whose stucture is based on derivatives of a phenyl-substituted 1-phenylpropane possessing a C15 or C16 skeleton, or such a structure which is condensed with a C6-C3 lignan precursors. The term is a 'superclass' comprising all members of the classes of flavonoid, isoflavonoid, neoflavonoid, chalcones, dihydrochalcones, aurones, pterocarpan, coumestans, rotenoid, flavonolignan, and flavonoid oligomers. Originally restricted to natural products, the term is also applied to synthetic compounds related to them.
ANON:ANON
flavonoid
ChEBI:
CL:0000000
cell
An individual member of the species Drosophila melanogaster.
fly_anatomy.ontology
Drosophila
whole organism
FBbt:00000001
organism
An individual member of the species Drosophila melanogaster.
FBC:DOS
Any sense organ (FBbt:00005155) that is part of some adult (FBbt:00003004).
fly_anatomy.ontology
FBbt:00004113
adult sense organ
Any sense organ (FBbt:00005155) that is part of some adult (FBbt:00003004).
FBC:auto_generated_definition
FlyBase:FBrf0007734
FlyBase:FBrf0031004
The compound eye is a light sensing organ composed of ommatidia.
fly_anatomy.ontology
compound eye
FBbt:00004508
eye
The compound eye is a light sensing organ composed of ommatidia.
FBC:gg
A division of the whole organism into specialized systems.
fly_anatomy.ontology
FBbt:00004856
organ system
A division of the whole organism into specialized systems.
FBC:gg
All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.
fly_anatomy.ontology
FBbt:00005093
nervous system
All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.
ISBN:978-3-11-014898-5
Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.
fly_anatomy.ontology
FBbt:00005155
sense organ
Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.
FBC:DOS
A light sensitive sense organ.
fly_anatomy.ontology
FBbt:00005162
photoreceptor
A light sensitive sense organ.
FBC:gg
fly_anatomy.ontology
eo
es
sensillum
FBbt:00005168
external sensory organ
Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
fly_anatomy.ontology
FBbt:00007001
anatomical structure
Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
CARO:MAH
FBC:DOS
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
fly_anatomy.ontology
FBbt:00007002
cell
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
CARO:MAH
fly_anatomy.ontology
FBbt:00007016
material anatomical entity
An anatomical structure consisting of multiple cell cluster organs and which does not contain portions of tissue.
fly_anatomy.ontology
FBbt:00007230
compound cell cluster organ
An anatomical structure consisting of multiple cell cluster organs and which does not contain portions of tissue.
FBC:DOS
Any compound cell cluster organ (FBbt:00007230) that functions in (some) detection of stimulus involved in sensory perception (GO:0050906).
compound sensillum
fly_anatomy.ontology
FBbt:00007234
compound sense organ
Any compound cell cluster organ (FBbt:00007230) that functions in (some) detection of stimulus involved in sensory perception (GO:0050906).
FBC:auto_generated_definition
fly_anatomy.ontology
FBbt:00007235
external compound sense organ
Anatomical structure that has multiple cells as parts.
fly_anatomy.ontology
FBbt:00100313
multicellular structure
Anatomical structure that has multiple cells as parts.
FBC:DOS
Anatomical entity which is part_of Drosophila melanogaster.
fly_anatomy.ontology
Drosophila
FBbt:10000000
anatomical entity
Anatomical entity which is part_of Drosophila melanogaster.
CARO:MAH
FlyBase miscellaneous CV
FBcv:0000000
FlyBase CV
pub_type
FBcv:0000001
This term was obsoleted because it was only ever used to annotate one publication: A copy of Calvin Bridges death certificate. This can still be found in the Drosophila offprint collection (FBrf0186653).
death certificate
true
Phenotype that is a defect in thermotaxis (GO:0043052). 'thermotaxis' is defined as: '$sub_GO:0043052'
thermotaxis behaviour defective
phenotypic_class
FBcv:0000002
thermotaxis behavior defective
Phenotype that is a defect in thermotaxis (GO:0043052). 'thermotaxis' is defined as: '$sub_GO:0043052'
FBC:DOS
FBcv:0000807
abbrev:1
mode_of_assay
FBcv:0000003
This term has been obsoleted because it is no longer used and relevant. mc151005
In transgenic Drosophila (intraspecific)
true
FBcv:0000807
abbrev:2
mode_of_assay
FBcv:0000004
This term has been obsoleted because it is no longer used and relevant. mc151005
Whole-organism transient assay (intraspecific)
true
Term used to qualify a descriptor.
FlyBase miscellaneous CV
FBcv:0000005
qualifier
Term used to qualify a descriptor.
FBC:MMC
phenotypic_class
FBcv:0000006
male semi-fertile
phenotypic_class
FBcv:0000007
female semi-fertile
Genotype g1 is a modifier of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is significantly different from that caused by g2 alone.
phenotypic_class
variegation
FBcv:0000008
fbcvsubset_mgiribbons
modifier of variegation
Genotype g1 is a modifier of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is significantly different from that caused by g2 alone.
FBC:DOS
variegation
FBC:DOS
FBcv:0000176
PATO:0000083
temporal_qualifier
FBcv:0000009
This term has been obsoleted because all of its children terms have been obsoleted [FBC:MMC]. mc161027
temporal stage qualifier
true
FBcv:0000176
PATO:0001773
FlyBase miscellaneous CV
FBcv:0000010
This term has been obsoleted because there are new terms to replace it [FBC:MMC]. mc160113
monophasic
true
FBcv:0000176
temporal_qualifier
FBcv:0000011
This term has been obsoleted because all of its children terms have been obsoleted [FBC:MMC]. mc161027
relative temporal qualifier
true
FBcv:0000176
PATO:0000165
FlyBase miscellaneous CV
FBcv:0000012
This term has been obsoleted because both of its children terms have been obsoleted [FBC:MMC]. mc160113
absolute temporal qualifier
true
Term that describes an allele, balancer, group or publication.
FlyBase miscellaneous CV
FBcv:0000013
descriptor
Term that describes an allele, balancer, group or publication.
FBC:MMC
Qualifier used to describe the appearance of extra copies of an anatomical structure.
structural_qualifier
FBcv:0000014
structural qualifier
Qualifier used to describe the appearance of extra copies of an anatomical structure.
FBC:MMC
pub_type
FBcv:0000015
This term was obsoleted because it was little used.
postage stamp
true
FlyBase miscellaneous CV
FBcv:0000016
Consider - FBsv:0000605.
Baylor TE recombination mapping kit stock
true
Penetrance is the fraction of individuals of a given genotype who exhibit the phenotype associated with that genotype.
FlyBase miscellaneous CV
FBcv:0000017
penetrance qualifier
true
Penetrance is the fraction of individuals of a given genotype who exhibit the phenotype associated with that genotype.
ISBN:978-0-7167-3520-5
Penetrance is the fraction of individuals of a given genotype who exhibit the phenotype associated with that genotype. Penetrance is complete when all the individuals of a given genotype exhibit the phenotype associated with that genotype.
FlyBase miscellaneous CV
FBcv:0000018
penetrance complete
true
Penetrance is the fraction of individuals of a given genotype who exhibit the phenotype associated with that genotype. Penetrance is complete when all the individuals of a given genotype exhibit the phenotype associated with that genotype.
ISBN:978-0-7167-3520-5
Penetrance is the fraction of individuals of a given genotype who exhibit the phenotype associated with that genotype. Penetrance is incomplete when only some the individuals of a given genotype exhibit the phenotype associated with that genotype.
FlyBase miscellaneous CV
FBcv:0000019
penetrance incomplete
true
Penetrance is the fraction of individuals of a given genotype who exhibit the phenotype associated with that genotype. Penetrance is incomplete when only some the individuals of a given genotype exhibit the phenotype associated with that genotype.
ISBN:978-0-7167-3520-5
Penetrance is the fraction of individuals of a given genotype who exhibit the phenotype associated with that genotype. Penetrance is incomplete when only a percentage of the individuals of a given genotype exhibit the phenotype associated with that genotype.
FlyBase miscellaneous CV
FBcv:0000020
This term should be modified by a % value. This is not currently possible in FlyBase curation.
penetrance percent
true
Penetrance is the fraction of individuals of a given genotype who exhibit the phenotype associated with that genotype. Penetrance is incomplete when only a percentage of the individuals of a given genotype exhibit the phenotype associated with that genotype.
ISBN:978-0-7167-3520-5
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level.
FlyBase miscellaneous CV
FBcv:0000021
expressivity qualifier
true
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level.
ISBN:978-0-7167-3520-5
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level. Expressivity is complete when an individual of a given genotype expresses the full phenotype associated with that genotype.
FlyBase miscellaneous CV
FBcv:0000022
expressivity complete
true
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level. Expressivity is complete when an individual of a given genotype expresses the full phenotype associated with that genotype.
ISBN:978-0-7167-3520-5
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level. Expressivity is incomplete when an individual of a given genotype expresses only partially the phenotype associated with that genotype.
FlyBase miscellaneous CV
FBcv:0000023
expressivity incomplete
true
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level. Expressivity is incomplete when an individual of a given genotype expresses only partially the phenotype associated with that genotype.
ISBN:978-0-7167-3520-5
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level. "High expressivity" conveys that while expressivity is not complete, the phenotype expressed is approaching that of complete expressivity.
FlyBase miscellaneous CV
FBcv:0000024
expressivity high
true
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level. "High expressivity" conveys that while expressivity is not complete, the phenotype expressed is approaching that of complete expressivity.
ISBN:978-0-7167-3520-5
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level. "Low expressivity" conveys that phenotype expressed is a much reduced version compared to complete expressivity.
FlyBase miscellaneous CV
FBcv:0000025
expressivity low
true
Expressivity measures the extent to which a given genotype is expressed at the phenotypic level. "Low expressivity" conveys that phenotype expressed is a much reduced version compared to complete expressivity.
ISBN:978-0-7167-3520-5
FlyBase miscellaneous CV
FBcv:0000026
recessive visible allele recombination mapping stock
true
FlyBase miscellaneous CV
FBcv:0000027
dominant visible allele recombination mapping stock
true
FlyBase miscellaneous CV
FBcv:0000028
Consider - FBsv:0001018.
SNP recombination mapping stock
true
FlyBase miscellaneous CV
FBcv:0000029
transposable element mutagenesis stock
true
FBcv:0000052
spatial_qualifier
FBcv:0000030
This term was obsoleted because a term from the anatom ontology (FBbt) should be used instead. If possible, please use 'developmental compartment' (FBbt:00007110) or one of its subclasses [FBC:MMC]. mc161027
compartment
true
FBcv:0000052
spatial_qualifier
FBcv:0000031
This term was obsoleted because a term from the anatom ontology (FBbt) should be used instead. If possible, please use 'developmental compartment' (FBbt:00007110) or one of its subclasses [FBC:MMC]. mc161027
anterior compartment
true
FBcv:0000052
spatial_qualifier
FBcv:0000032
This term was obsoleted because a term from the anatom ontology (FBbt) should be used instead. If possible, please use 'developmental compartment' (FBbt:00007110) or one of its subclasses [FBC:MMC]. mc161027
compartment boundary
true
FBcv:0000052
spatial_qualifier
FBcv:0000033
This term was obsoleted because a term from the anatom ontology (FBbt) should be used instead. If possible, please use 'developmental compartment' (FBbt:00007110) or one of its subclasses [FBC:MMC]. mc161027
anterior/posterior compartment boundary
true
FBcv:0000052
spatial_qualifier
FBcv:0000034
This term was obsoleted because a term from the anatom ontology (FBbt) should be used instead. If possible, please use 'developmental compartment' (FBbt:00007110) or one of its subclasses [FBC:MMC]. mc161027
dorsal/ventral compartment boundary
true
FBcv:0000052
spatial_qualifier
FBcv:0000035
This term was obsoleted because a term from the anatom ontology (FBbt) should be used instead. If possible, please use 'developmental compartment' (FBbt:00007110) or one of its subclasses [FBC:MMC]. mc161027
dorsal compartment
true
FBcv:0000052
spatial_qualifier
FBcv:0000036
This term was obsoleted because a term from the anatom ontology (FBbt) should be used instead. If possible, please use 'developmental compartment' (FBbt:00007110) or one of its subclasses [FBC:MMC]. mc161027
posterior compartment
true
FBcv:0000052
spatial_qualifier
FBcv:0000037
This term was obsoleted because a term from the anatom ontology (FBbt) should be used instead. If possible, please use 'developmental compartment' (FBbt:00007110) or one of its subclasses [FBC:MMC]. mc161027
ventral compartment
true
PATO:0001631
spatial_qualifier
FBcv:0000038
relative spatial qualifier
PATO:0001632
spatial_qualifier
FBcv:0000039
anterior to
PATO:0001234
spatial_qualifier
FBcv:0000040
distal to
PATO:0001233
spatial_qualifier
FBcv:0000041
dorsal to
FlyBase miscellaneous CV
deletion kit stock
FBcv:0000042
deficiency kit stock
true
FlyBase miscellaneous CV
FBcv:0000043
Consider - FBsv:0001020.
transposase source for transposable element mutagenesis
true
FlyBase miscellaneous CV
FBcv:0000044
Consider - FBsv:0001022.
ammunition source for transposable element mutagenesis
true
PATO:0001633
spatial_qualifier
FBcv:0000045
posterior to
temporal_qualifier
FBcv:0000046
precursor
PATO:0001195
spatial_qualifier
FBcv:0000047
proximal to
PATO:0001772
spatial_qualifier
FBcv:0000048
surrounding
PATO:0001196
spatial_qualifier
FBcv:0000049
ventral to
PATO:0001771
spatial_qualifier
FBcv:0000050
vicinity of
Present in the area that separates segments.
spatial_qualifier
FBcv:0000051
segment boundary
Present in the area that separates segments.
FBC:MMC
Qualifier that describes the spatial characteristics of a phenotype or expression pattern.
spatial_qualifier
FBcv:0000052
spatial qualifier
Qualifier that describes the spatial characteristics of a phenotype or expression pattern.
FBC:MMC
Restricted to anterior region of some specified type.
spatial_qualifier
FBcv:0000053
anterior
Restricted to anterior region of some specified type.
FBC:DS
Restricted to apical region of some specified type.
spatial_qualifier
FBcv:0000054
apical
Restricted to apical region of some specified type.
FBC:DS
Restricted to basal region of some specified type.
spatial_qualifier
FBcv:0000055
basal
Restricted to basal region of some specified type.
FBC:DS
Restricted to central region of some specified type.
spatial_qualifier
FBcv:0000056
central
Restricted to central region of some specified type.
FBC:DS
FBcv:0000052
spatial_qualifier
FBcv:0000057
This term has been obsoleted because there is no way to combine it with an anatomy term to produce a meaningful statement [FBC:MMC]. mc160113.
contralateral
true
Restricted to distal region of some specified type.
spatial_qualifier
FBcv:0000058
distal
Restricted to distal region of some specified type.
FBC:DS
Restricted to dorsal region of some specified type.
spatial_qualifier
FBcv:0000059
dorsal
Restricted to dorsal region of some specified type.
FBC:DS
Restricted to dorso-lateral region of some specified type.
spatial_qualifier
FBcv:0000060
dorso-lateral
Restricted to dorso-lateral region of some specified type.
FBC:DS
When, compared to wild-type, an extra copy of an anatomical structure is present in an abnormal location, then this structure is ectopic.
structural_qualifier
FBcv:0000061
An extra copy of an anatomical structure that is present in the same location as in wild-type is supernumerary, rather than ectopic.
ectopic
When, compared to wild-type, an extra copy of an anatomical structure is present in an abnormal location, then this structure is ectopic.
FBC:DOS
FBcv:0000052
spatial_qualifier
FBcv:0000062
This term has been obsoleted because there is no way to combine it with an anatomy term to produce a meaningful statement [FBC:MMC]. mc161027
ipsilateral
true
Restricted to lateral region(s) of some specified type.
spatial_qualifier
FBcv:0000063
lateral
Restricted to lateral region(s) of some specified type.
FBC:DS
Restricted to medial region of some specified type.
spatial_qualifier
FBcv:0000064
medial
Restricted to medial region of some specified type.
FBC:DS
Restricted to posterior region of some specified type.
spatial_qualifier
FBcv:0000065
posterior
Restricted to posterior region of some specified type.
FBC:DS
Restricted to proximal region of some specified type.
spatial_qualifier
FBcv:0000066
proximal
Restricted to proximal region of some specified type.
FBC:DS
Restricted to unknown part(s) of a specified type.
spatial_qualifier
FBcv:0000067
restricted
Restricted to unknown part(s) of a specified type.
FBC:DS
Present in the correct location but in larger numbers than in wild-type.
structural_qualifier
FBcv:0000068
supernumerary
Present in the correct location but in larger numbers than in wild-type.
FBC:DOS
Expressed everywhere at some specified stage.
spatial_qualifier
FBcv:0000069
ubiquitous
Expressed everywhere at some specified stage.
FBC:DOS
Restricted to ventral region of some specified type.
spatial_qualifier
FBcv:0000070
ventral
Restricted to ventral region of some specified type.
FBC:DS
Restricted to ventro-lateral region of some specified type.
spatial_qualifier
FBcv:0000071
ventro-lateral
Restricted to ventro-lateral region of some specified type.
FBC:DS
FlyBase miscellaneous CV
FBcv:0000072
gene expression qualifier
true
FlyBase miscellaneous CV
FBcv:0000073
embryonic expression pattern
true
Position in the egg or pre-gastrula embryo expressed as a percentage of egg length, where 0% corresponds to the posterior tip and 100% to the anterior tip.
spatial_qualifier
FBcv:0000074
egg length
Position in the egg or pre-gastrula embryo expressed as a percentage of egg length, where 0% corresponds to the posterior tip and 100% to the anterior tip.
FBC:DOS
At the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000075
0% egg length
At the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
0-10% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000076
0-10% egg length
0-10% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
The full length of the pre-gastrula embryo.
spatial_qualifier
FBcv:0000077
0-100% egg length
The full length of the pre-gastrula embryo.
FBC:DOS
0-20% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000078
0-20% egg length
0-20% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
0-30% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000079
0-30% egg length
0-30% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
0-40% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000080
0-40% egg length
0-40% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
0-50% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000081
0-50% egg length
0-50% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
0-60% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000082
0-60% egg length
0-60% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
0-70% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000083
0-70% egg length
0-70% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
0-80% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000084
0-80% egg length
0-80% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
0-90% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000085
0-90% egg length
0-90% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
10% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000086
10% egg length
10% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
10-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000087
10-100% egg length
10-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
10-20% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000088
10-20% egg length
10-20% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
10-30% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000089
10-30% egg length
10-30% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
10-40% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000090
10-40% egg length
10-40% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
10-50% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000091
10-50% egg length
10-50% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
10-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000092
10-60% egg length
10-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
10-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000093
10-70% egg length
10-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
10-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000094
10-80% egg length
10-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
10-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000095
10-90% egg length
10-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
At the anterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000096
100% egg length
At the anterior tip of the egg or pre-gastrula embryo.
FBC:DOS
10% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000097
20% egg length
10% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
20-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000098
20-100% egg length
20-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
20-30% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000099
20-30% egg length
20-30% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
20-40% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000100
20-40% egg length
20-40% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
20-50% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000101
20-50% egg length
20-50% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
20-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000102
20-60% egg length
20-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
20-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000103
20-70% egg length
20-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
20-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000104
20-80% egg length
20-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
20-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000105
20-90% egg length
20-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
30% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000106
30% egg length
30% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
30-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000107
30-100% egg length
30-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
30-40% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000108
30-40% egg length
30-40% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
30-50% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000109
30-50% egg length
30-50% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
30-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000110
30-60% egg length
30-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
30-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000111
30-70% egg length
30-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
30-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000112
30-80% egg length
30-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
30-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000113
30-90% egg length
30-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
40% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000114
40% egg length
40% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
40-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000115
40-100% egg length
40-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
40-50% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000116
40-50% egg length
40-50% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
40-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000117
40-60% egg length
40-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
40-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000118
40-70% egg length
40-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
40-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000119
40-80% egg length
40-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
40-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000120
40-90% egg length
40-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
50% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000121
50% egg length
50% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
50-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000122
50-100% egg length
50-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
50-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000123
50-60% egg length
50-60% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
50-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000124
50-70% egg length
50-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
50-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000125
50-80% egg length
50-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
50-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000126
50-90% egg length
50-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
60% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000127
60% egg length
60% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
60-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000128
60-100% egg length
60-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
60-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000129
60-80% egg length
60-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
60-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000130
60-90% egg length
60-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
70% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000131
70% egg length
70% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
70-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000132
70-100% egg length
70-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
70-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000133
70-80% egg length
70-80% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
70-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000134
70-90% egg length
70-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
80% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000135
80% egg length
80% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
80-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000136
80-90% egg length
80-90% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
90% of egg length from the posterior tip of the egg or pre-gastrula embryo.
spatial_qualifier
FBcv:0000137
90% egg length
90% of egg length from the posterior tip of the egg or pre-gastrula embryo.
FBC:DOS
true
90-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBcv:0000138
spatial_qualifier
90-100% egg length
FBcv:0000139
90-100% egg length
90-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
A record of an analysis carried out by FlyBase that has not been formally published.
pub_type
FBcv:0000140
FlyBase analysis
A record of an analysis carried out by FlyBase that has not been formally published.
FBC:SM
Expression pattern which varies in intensity following a gradient in a specific axis.
spatial_qualifier
FBcv:0000141
gradient
Expression pattern which varies in intensity following a gradient in a specific axis.
FBC:MMC
Expression pattern which varies in intensity following a gradient in the anterior-posterior axis.
spatial_qualifier
FBcv:0000142
anterior posterior gradient
Expression pattern which varies in intensity following a gradient in the anterior-posterior axis.
FBC:MMC
Expression pattern which varies in intensity following a gradient in the dorsal-ventral axis.
spatial_qualifier
FBcv:0000143
dorsal ventral gradient
Expression pattern which varies in intensity following a gradient in the dorsal-ventral axis.
FBC:MMC
FlyBase miscellaneous CV
FBcv:0000144
maternal pattern
true
Restricted to stripes in some specified type.
spatial_qualifier
FBcv:0000145
striped
Restricted to stripes in some specified type.
FBC:DS
Sequence change caused by the cleavage of a 19-24 bp palindromic DNA site by the I-CreI endonuclease.
change induced by I-CreI endonuclease cleavage
origin_of_mutation
FBcv:0000146
I-CreI
Sequence change caused by the cleavage of a 19-24 bp palindromic DNA site by the I-CreI endonuclease.
UniProt:P05725
Expression in even, but not odd numbered segment of the blastoderm.
embryonic_pattern_qualifier
FBcv:0000147
even pair rule expression pattern
Expression in even, but not odd numbered segment of the blastoderm.
FBC:DOS
Expression in odd, but not even numbered segments of the blastoderm.
embryonic_pattern_qualifier
FBcv:0000148
odd pair rule expression pattern
Expression in odd, but not even numbered segments of the blastoderm.
FBC:DOS
A list of species found in a specified area.
pub_type
FBcv:0000149
species list
A list of species found in a specified area.
FBC:SM
Restricted to a segmentally repeated pattern with some specified type.
spatial_qualifier
FBcv:0000150
segmentally repeated
Restricted to a segmentally repeated pattern with some specified type.
FBC:DOS
pub_type
FBcv:0000151
This term was obsoleted because there because there were no instances of its use to classify any artefact in FlyBase.
archive
true
A stock with one or more chromosomes (balancers) that are used primarily for their ability to preserve a stock genotype without selection.
FlyBase miscellaneous CV
FBcv:0000152
Consider - FBsv:0001001.
balancer stock
true
A stock with one or more chromosomes (balancers) that are used primarily for their ability to preserve a stock genotype without selection.
FBC:KM
A phenotypic effect which is expressed in and limited to cells of the mutant genetic constitution under investigation is said to be cell autonomous.
genotype_to_phenotype_relation
FBcv:0000153
cell autonomous
A phenotypic effect which is expressed in and limited to cells of the mutant genetic constitution under investigation is said to be cell autonomous.
FlyBase:FBrf0002379
A phenotypic effect which is not expressed in/limited to cells of the mutant genetic constitution under investigation is said to be cell non-autonomous.
genotype_to_phenotype_relation
FBcv:0000154
cell non-autonomous
A phenotypic effect which is not expressed in/limited to cells of the mutant genetic constitution under investigation is said to be cell non-autonomous.
FlyBase:FBrf0002379
Chromosome that carries inversions and visible mutations, and which can be used to identify the genotype of an individual.
FlyBase miscellaneous CV
FBcv:0000155
single balancer
Chromosome that carries inversions and visible mutations, and which can be used to identify the genotype of an individual.
FlyBase:FBrf0089469
FlyBase:FBrf0202435
FlyBase miscellaneous CV
FBcv:0000156
pair of homologous balancers
true
FlyBase miscellaneous CV
FBcv:0000157
recessive lethal balancer
true
FlyBase miscellaneous CV
FBcv:0000158
Consider - FBsv:0001006.
balancer for chromosome 1
true
FlyBase miscellaneous CV
FBcv:0000159
Consider - FBsv:0001007.
balancer for chromosome 2
true
FlyBase miscellaneous CV
FBcv:0000160
Consider - FBsv:0001008.
balancer for chromosome 3
true
A phenotypic attribute is described as showing a maternal effect when the phenotype of an individual is a manifestation of the genotype of the mother, rather than the genotype of the individual.
genotype_to_phenotype_relation
FBcv:0000161
maternal effect
A phenotypic attribute is described as showing a maternal effect when the phenotype of an individual is a manifestation of the genotype of the mother, rather than the genotype of the individual.
ISBN:978-0-7167-3520-5
A phenotypic attribute is described as showing a non-rescuable maternal effect (strict maternal effect) when the introduction of a wild-type copy of the responsible mutation from the father has no ameliorating effect on the maternal effect mutant phenotype.
genotype_to_phenotype_relation
FBcv:0000162
non-rescuable maternal effect
A phenotypic attribute is described as showing a non-rescuable maternal effect (strict maternal effect) when the introduction of a wild-type copy of the responsible mutation from the father has no ameliorating effect on the maternal effect mutant phenotype.
FlyBase:FBrf0049894
A phenotypic attribute is described as showing a rescuable maternal effect when the introduction of a wild-type copy of the responsible mutation from the father ameliorates the maternal effect mutant phenotype.
genotype_to_phenotype_relation
FBcv:0000163
rescuable maternal effect
A phenotypic attribute is described as showing a rescuable maternal effect when the introduction of a wild-type copy of the responsible mutation from the father ameliorates the maternal effect mutant phenotype.
FlyBase:FBrf0049894
A phenotypic attribute is described as showing a paternal effect when the phenotype of an individual is a manifestation of the genotype of the father, rather than the genotype of the individual.
genotype_to_phenotype_relation
FBcv:0000164
paternal effect
A phenotypic attribute is described as showing a paternal effect when the phenotype of an individual is a manifestation of the genotype of the father, rather than the genotype of the individual.
FlyBase:FBrf0102738
FlyBase miscellaneous CV
FBcv:0000165
pair of balancers for chromosome 2
true
Qualifier that describes an observed expression pattern.
expression_qualifier
FBcv:0000166
morphological qualifier
Qualifier that describes an observed expression pattern.
FBC:MMC
Weak expression.
expression_qualifier
FBcv:0000167
faint
Weak expression.
FBC:MMC
Expression pattern that resembles small grains or particles.
PATO:0001759
expression_qualifier
FBcv:0000168
granular
Expression pattern that resembles small grains or particles.
FBC:MMC
Strong expression.
PATO:0000049
expression_qualifier
FBcv:0000169
intense
Strong expression.
FBC:MMC
Expression pattern that resembles small dots.
PATO:0001512
expression_qualifier
FBcv:0000170
punctate
Expression pattern that resembles small dots.
FBC:MMC
Expression pattern that is constant throughout the assayed anatomical entity.
PATO:0000438
expression_qualifier
FBcv:0000171
uniform
Expression pattern that is constant throughout the assayed anatomical entity.
FBC:MMC
Expression pattern that changes throughout the assayed anatomical entity.
PATO:0001227
expression_qualifier
FBcv:0000172
variable
Expression pattern that changes throughout the assayed anatomical entity.
FBC:MMC
FlyBase miscellaneous CV
FBcv:0000173
pair of balancers for chromosome 3
true
FlyBase miscellaneous CV
FBcv:0000174
Consider - FBsv:0001012.
dominant male sterile balancer
true
FlyBase miscellaneous CV
FBcv:0000175
Consider - FBsv:0001012.
dominant female sterile balancer
true
temporal_qualifier
FBcv:0000176
temporal qualifier
FlyBase miscellaneous CV
FBcv:0000177
dominant female sterile balancer for chromosome 2
true
FBcv:0000176
PATO:0000694
temporal_qualifier
FBcv:0000178
This term was obsoleted because a term from the developmental ontology (FBdv) should be used instead [FBC:MMC]. mc161027
early
true
FlyBase miscellaneous CV
FBcv:0000179
dominant female sterile balancer for chromosome 3
true
FlyBase miscellaneous CV
FBcv:0000180
dominant male sterile balancer for chromosome 2
true
FBcv:0000176
PATO:0000502
temporal_qualifier
FBcv:0000181
This term was obsoleted because a term from the developmental ontology (FBdv) should be used instead [FBC:MMC]. mc161027
late
true
FBcv:0000176
temporal_qualifier
FBcv:0000182
This term was obsoleted because a term from the developmental ontology (FBdv) should be used instead [FBC:MMC]. mc161027
mid
true
FBcv:0000176
FlyBase miscellaneous CV
FBcv:0000183
This term has been obsoleted because there are new stage terms that can be used instead [FBC:MMC]. mc160113
n day
true
FBcv:0000176
FlyBase miscellaneous CV
FBcv:0000184
This term has been obsoleted because there are new stage terms that can be used instead [FBC:MMC]. mc160113
n hr
true
FlyBase miscellaneous CV
FBcv:0000185
dominant male sterile balancer for chromosome 3
true
FlyBase miscellaneous CV
FBcv:0000186
recessive lethal balancer for chromosome 1
true
FlyBase miscellaneous CV
FBcv:0000187
recessive lethal balancer for chromosome 2
true
Qualifier that describes the type of publication.
FlyBase miscellaneous CV
FBcv:0000188
publication descriptor
Qualifier that describes the type of publication.
FBC:MMC
A publicly available document. It includes individual articles, such as research papers and reviews, and collections of articles, such as scientific journals.
pub_type
FBcv:0000189
publication class
A publicly available document. It includes individual articles, such as research papers and reviews, and collections of articles, such as scientific journals.
FBC:DOS
FBC:SM
An individual abstract of a presentation at a meeting, congress, conference, symposium, colloquium, seminar, workshop, round table, or other professional gathering.
MeSH:D016416
Meeting Abstracts
pub_type
FBcv:0000190
abstract
An individual abstract of a presentation at a meeting, congress, conference, symposium, colloquium, seminar, workshop, round table, or other professional gathering.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016416
Meeting Abstracts
MeSH:D016416
pub_type
FBcv:0000191
This term was obsoleted because it only ever used to annotate a couple of publications.
advertisement
true
A work consisting of a self-described account.
MeSH:D020493
pub_type
FBcv:0000192
autobiography
A work consisting of a self-described account.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D020493
A work consisting of a list of books, articles, documents, publications, and other items, usually on a single subject or related subjects.
MeSH:D016417
Bibliography
pub_type
FBcv:0000193
bibliographic list
A work consisting of a list of books, articles, documents, publications, and other items, usually on a single subject or related subjects.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016417
Bibliography
MeSH:D016417
A work consisting of an account of the events, works, and achievements, personal and professional, during a person's life. This class includes articles on the activities and accomplishments of living persons as well as the presentation of an obituary.
MeSH:D019215
pub_type
FBcv:0000194
biography
A work consisting of an account of the events, works, and achievements, personal and professional, during a person's life. This class includes articles on the activities and accomplishments of living persons as well as the presentation of an obituary.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D019215
A publication on a single subject or related subjects that is complete in itself, whether constructed of chapters, sections, or parts, and that is not issued on a regular, ongoing basis. Every chapter is written by the same author or authors of the publication.
pub_type
FBcv:0000195
For books (in the common sense of the term) that have different authors for each chapter, please use 'edited book'.
book
A publication on a single subject or related subjects that is complete in itself, whether constructed of chapters, sections, or parts, and that is not issued on a regular, ongoing basis. Every chapter is written by the same author or authors of the publication.
FBC:SM
pub_type
FBcv:0000196
This term was obsoleted because it was little used in curation. The formerly associated publications have mainly been annotated with other, more appropriate publication classes.
booklet
true
A work consisting of a critical analysis of one or more books or other monographic works.
MeSH:D022921
Book Reviews
pub_type
FBcv:0000197
book review
A work consisting of a critical analysis of one or more books or other monographic works.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D022921
Book Reviews
MeSH:D022921
pub_type
CD-ROM
FBcv:0000198
computer file
true
The published records of the papers delivered at or issued on the occasion of individual congresses, symposia, and meetings; abstracts of papers delivered at such congresses; reports of the officers and delegates of such congresses; combinations of the foregoing; or proceedings of the conference of a society if they are not limited to matters of internal organization.
MeSH:D016423
Congresses
conference proceedings
meeting report
pub_type
FBcv:0000199
The definition is taken straight from the MeSH term Congresses, which PubMed uses to annotate both meeting reports written by attendees and conference abstract books. This term should therefore be used to index both of these two rather different artefacts.
conference report
The published records of the papers delivered at or issued on the occasion of individual congresses, symposia, and meetings; abstracts of papers delivered at such congresses; reports of the officers and delegates of such congresses; combinations of the foregoing; or proceedings of the conference of a society if they are not limited to matters of internal organization.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016423
Congresses
MeSH:D016423
pub_type
FBcv:0000200
This term was obsoleted because it was little used. All publications associated with it have been re-annotated with other publication classes.
demonstration
true
A record of a DNA or RNA sequence in some standard format, such as GenBank or EMBL or DDBJ.
pub_type
FBcv:0000201
DNA/RNA sequence record
A record of a DNA or RNA sequence in some standard format, such as GenBank or EMBL or DDBJ.
FBC:DOS
FBC:SM
A record of a protein sequence in some standard format, such as UniProtKB.
pub_type
FBcv:0000202
protein sequence record
A record of a protein sequence in some standard format, such as UniProtKB.
FBC:SM
A work consisting of an acknowledgement of an error, issued by a publisher, editor, or author.
MeSH:D016425
Corrigendum
Published Erratum
correction
pub_type
FBcv:0000203
erratum
A work consisting of an acknowledgement of an error, issued by a publisher, editor, or author.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016425
Corrigendum
MeSH:D016425
Published Erratum
MeSH:D016425
A film or video that is factual, documentary or instructional in character.
video
pub_type
FBcv:0000204
film
A film or video that is factual, documentary or instructional in character.
FBC:SM
MeSH:D019499
MeSH:D019514
A work consisting of a conversation with an individual regarding his or her background and other personal and professional details, opinions on specific subjects posed by the interviewer.
MeSH:D017203
pub_type
FBcv:0000205
interview
A work consisting of a conversation with an individual regarding his or her background and other personal and professional details, opinions on specific subjects posed by the interviewer.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D017203
pub_type
FBcv:0000206
This term was obsoleted because it only ever used to annotate one, unarchived publication.
jigsaw puzzle
true
A work consisting of written or printed communication between individuals or between persons and representatives of corporate bodies. The correspondence may be personal or professional.
MeSH:D016422
pub_type
FBcv:0000207
In medical and other scientific publications the letter is usually from one or more authors to the editor of the journal or book publishing the item being commented upon or discussed.
letter
A work consisting of written or printed communication between individuals or between persons and representatives of corporate bodies. The correspondence may be personal or professional.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016422
pub_type
FBcv:0000208
This term was obsoleted because it had only been used once in FlyBase, and this was for an artefact that is not present in a FlyBase associated archive. The associated record in FlyBase CHADO has been obsoleted.
microscope slides
true
A work consisting of an announcement or statement of recent or current events of new data and matters of interest in the field of medicine or science, published in a scientific journal.
MeSH:D016433
pub_type
FBcv:0000209
news article
A work consisting of an announcement or statement of recent or current events of new data and matters of interest in the field of medicine or science, published in a scientific journal.
FBC:SM
MeSH:D016433
A work consisting of a critical or explanatory note written to discuss, support, or dispute an article or other presentation previously published.
MeSH:D016420
Comment
pub_type
FBcv:0000210
note
A work consisting of a critical or explanatory note written to discuss, support, or dispute an article or other presentation previously published.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016420
Comment
MeSH:D016420
A published announcement of a death accompanied by a short biography of the deceased.
pub_type
FBcv:0000211
obituary
A published announcement of a death accompanied by a short biography of the deceased.
FBC:SM
An article reporting original research, published in a peer-reviewed journal.
Journal article
MeSH:D016428
pub_type
FBcv:0000212
Note that this is a much more specific class than that referred to by MeSH Journal article (D016428).
paper
An article reporting original research, published in a peer-reviewed journal.
FBC:SM
Journal article
MeSH:D016428
A work consisting of documents granted by a government giving exclusive rights to an inventor or assignee to manufacture, use, or sell an invention for a certain number of years.
MeSH:D020490
pub_type
FBcv:0000213
patent
A work consisting of documents granted by a government giving exclusive rights to an inventor or assignee to manufacture, use, or sell an invention for a certain number of years.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D020490
A work that has not been formally published and that consists of observations or data submitted by a researcher or group of researchers directly to FlyBase.
pub_type
FBcv:0000214
personal communication to FlyBase
A work that has not been formally published and that consists of observations or data submitted by a researcher or group of researchers directly to FlyBase.
FBC:DOS
FBC:SM
A literary or oral work expressing meaning via symbolism and following formal or informal patterns.
MeSH:D055821
poetry
pub_type
FBcv:0000215
poem
A literary or oral work expressing meaning via symbolism and following formal or informal patterns.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D055821
poetry
MeSH:D055821
A work consisting of a single or multi-sheet notice made to attract attention to events, activities, causes, goods, or services. It is for posting, usually in a public place and is chiefly pictorial. It is intended to make an immediate impression from a distance.
MeSH:D019519
pub_type
FBcv:0000216
The class does not encompass poster presentations at conferences and meetings.
poster
A work consisting of a single or multi-sheet notice made to attract attention to events, activities, causes, goods, or services. It is for posting, usually in a public place and is chiefly pictorial. It is intended to make an immediate impression from a distance.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D019519
A written or recorded communication directed at members of the news media for the purpose of announcing something ostensibly newsworthy.
pub_type
FBcv:0000217
press release
A written or recorded communication directed at members of the news media for the purpose of announcing something ostensibly newsworthy.
http://en.wikipedia.org/w/index.php?title=Press_release&oldid=482495713
pub_type
FBcv:0000218
This term has been obsoleted because it was little used in curation and the artefacts annotated with it are not present in any FlyBase associated archive. Records annotated with this term have been obsoleted in the FlyBase CHADO database.
recording
true
A work consisting of a statement issued by one or more authors of an article or a book, withdrawing or disavowing acknowledgement of their participation in performing research or writing the results of their study.
MeSH:D016440
Retraction of Publication
pub_type
FBcv:0000219
retraction
A work consisting of a statement issued by one or more authors of an article or a book, withdrawing or disavowing acknowledgement of their participation in performing research or writing the results of their study.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016440
Retraction of Publication
MeSH:D016440
An article or book published after examination of published material on a subject.
MeSH:D016454
pub_type
FBcv:0000220
The reviews most often desired are reviews of the current literature, but a review of historical literature is also within the scope of this publication type.
review
An article or book published after examination of published material on a subject.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016454
pub_type
FBcv:0000221
This term has been obsoleted because it was little used in curation and the artefacts annotated with it are not present in any FlyBase associated archive.
slides
true
A mildly satirical mockery or parody of a conventional publication type.
MeSH:D020480
pub_type
FBcv:0000222
spoof
A mildly satirical mockery or parody of a conventional publication type.
FBC:SM
A list of Drosophila stocks kept by a specified stock center or research group.
pub_type
FBcv:0000223
stock list
A list of Drosophila stocks kept by a specified stock center or research group.
FBC:SM
Supporting content or information, such as animation, datasets, multimedia files, video, movies, audio files, text files, or software, which is submitted for publication in an online journal or an online edition of a journal. This information may be referenced in the text of the article with a link to the supplementary data provided.
MeSH:D058537
Electronic Supplementary Materials
additional files
supplementary information
supporting information
pub_type
FBcv:0000224
supplementary material
Supporting content or information, such as animation, datasets, multimedia files, video, movies, audio files, text files, or software, which is submitted for publication in an online journal or an online edition of a journal. This information may be referenced in the text of the article with a link to the supplementary data provided.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D058537
Electronic Supplementary Materials
MeSH:D058537
pub_type
FBcv:0000225
This term was obsoleted because it had been used only once in ~20 years of curation.
T-shirt
true
A diagram that is designed to be touched, rather than looked at. These are generally made for use by blind or visually impaired people.
pub_type
FBcv:0000226
tactile diagram
true
A diagram that is designed to be touched, rather than looked at. These are generally made for use by blind or visually impaired people.
FBC:DOS
An article describing exercises or practicals suitable for teaching.
pub_type
FBcv:0000227
teaching note
An article describing exercises or practicals suitable for teaching.
FBC:SM
A work consisting of a formal presentation made usually to fulfill requirements for an academic degree.
MeSH:D019478
Academic Dissertations
pub_type
FBcv:0000228
thesis
A work consisting of a formal presentation made usually to fulfill requirements for an academic degree.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D019478
Academic Dissertations
MeSH:D019478
A systematic effort to annotate gene models on a sequenced Drosophila genome, such as those conducted for D. melanogaster at the Celera Jamboree. Annotations may be performed manually or automatically.
pub_type
automatic genome annotation
FBcv:0000229
Note that the name of this publication type will change to simply 'genome annotation', but this change has been delayed pending required work on the database.
curated genome annotation
A systematic effort to annotate gene models on a sequenced Drosophila genome, such as those conducted for D. melanogaster at the Celera Jamboree. Annotations may be performed manually or automatically.
FBC:SM
FBcv:0000229
pub_type
FBcv:0000230
This term was obsoleted because it was hardly ever used. Please use FBcv:0000229 instead.
automatic genome annotation
true
A work consisting of a set of statements, directions, or principles presenting current or future rules or policy.
Guideline
MeSH:D016431
pub_type
FBcv:0000231
white paper
A work consisting of a set of statements, directions, or principles presenting current or future rules or policy.
FBC:SM
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016431
Guideline
MeSH:D016431
FlyBase miscellaneous CV
FBcv:0000232
recessive lethal balancer for chromosome 3
true
A work that has not been formally published.
MeSH:D022902
Unpublished Works
pub_type
privately distributed report
FBcv:0000233
unpublished
A work that has not been formally published.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D022902
Unpublished Works
MeSH:D022902
Qualifier that describes the language of the publication.
language
FBcv:0000234
publication language
Qualifier that describes the language of the publication.
FBC:MMC
Publication in the Afrikaans language.
language
FBcv:0000235
Afrikaans
Publication in the Afrikaans language.
FBC:MMC
Publication in the Arabic language.
language
FBcv:0000236
Arabic
Publication in the Arabic language.
FBC:MMC
Publication in the Armenian language.
language
FBcv:0000237
Armenian
Publication in the Armenian language.
FBC:MMC
Publication in the Belarussian language.
language
Belarusian
FBcv:0000238
Belarussian
Publication in the Belarussian language.
FBC:MMC
Publication in the Bulgarian language.
language
FBcv:0000239
Bulgarian
Publication in the Bulgarian language.
FBC:MMC
Publication in the Catalan language.
language
FBcv:0000240
Catalan
Publication in the Catalan language.
FBC:MMC
Publication in the Chinese language.
language
FBcv:0000241
Chinese
Publication in the Chinese language.
FBC:MMC
Publication in the Cumbrian language.
language
FBcv:0000242
Cumbrian
Publication in the Cumbrian language.
FBC:MMC
Publication in the Czech language.
language
FBcv:0000243
Czech
Publication in the Czech language.
FBC:MMC
Publication in the Danish language.
language
FBcv:0000244
Danish
Publication in the Danish language.
FBC:MMC
Publication in the Dutch language.
language
FBcv:0000245
Dutch
Publication in the Dutch language.
FBC:MMC
Publication in the English language.
language
FBcv:0000246
English
Publication in the English language.
FBC:MMC
Publication in the Estonian language.
language
FBcv:0000247
Estonian
Publication in the Estonian language.
FBC:MMC
Publication in the Faroese language.
language
FBcv:0000248
Faroese
Publication in the Faroese language.
FBC:MMC
Publication in the Farsi language.
language
FBcv:0000249
Farsi
Publication in the Farsi language.
FBC:MMC
Publication in the Finnish language.
language
FBcv:0000250
Finnish
Publication in the Finnish language.
FBC:MMC
Publication in the Flemish language.
language
FBcv:0000251
Flemish
Publication in the Flemish language.
FBC:MMC
Publication in the French language.
language
FBcv:0000252
French
Publication in the French language.
FBC:MMC
Publication in the German language.
language
FBcv:0000253
German
Publication in the German language.
FBC:MMC
Publication in the Greek language.
language
FBcv:0000254
Greek
Publication in the Greek language.
FBC:MMC
Publication in the Hebrew language.
language
FBcv:0000255
Hebrew
Publication in the Hebrew language.
FBC:MMC
Publication in the Hungarian language.
language
FBcv:0000256
Hungarian
Publication in the Hungarian language.
FBC:MMC
Publication in the Icelandic language.
language
FBcv:0000257
Icelandic
Publication in the Icelandic language.
FBC:MMC
Publication in the Indonesian language.
language
FBcv:0000258
Indonesian
Publication in the Indonesian language.
FBC:MMC
Publication in the Italian language.
language
FBcv:0000259
Italian
Publication in the Italian language.
FBC:MMC
Publication in the Japanese language.
language
FBcv:0000260
Japanese
Publication in the Japanese language.
FBC:MMC
Publication in the Jugoslavian language.
language
FBcv:0000261
Jugoslavian
Publication in the Jugoslavian language.
FBC:MMC
Publication in the Korean language.
language
FBcv:0000262
Korean
Publication in the Korean language.
FBC:MMC
Publication in the Latin language.
language
FBcv:0000263
Latin
Publication in the Latin language.
FBC:MMC
Publication in the Latvian language.
language
FBcv:0000264
Latvian
Publication in the Latvian language.
FBC:MMC
Publication in the Lithuanian language.
language
FBcv:0000265
Lithuanian
Publication in the Lithuanian language.
FBC:MMC
Publication in the Malay language.
language
FBcv:0000266
Malay
Publication in the Malay language.
FBC:MMC
Publication in the Malayalam language.
language
FBcv:0000267
Malayalam
Publication in the Malayalam language.
FBC:MMC
Publication in the Norwegian language.
language
FBcv:0000268
Norwegian
Publication in the Norwegian language.
FBC:MMC
Publication in the Polish language.
language
FBcv:0000269
Polish
Publication in the Polish language.
FBC:MMC
Publication in the Portuguese language.
language
FBcv:0000270
Portuguese
Publication in the Portuguese language.
FBC:MMC
Publication in the Serbo-Croat (Roman) language.
language
FBcv:0000271
Serbo-Croat(Roman)
Publication in the Serbo-Croat (Roman) language.
FBC:MMC
Publication in the Roman language.
language
FBcv:0000272
Romanian
Publication in the Roman language.
FBC:MMC
Publication in the Russian language.
language
FBcv:0000273
Russian
Publication in the Russian language.
FBC:MMC
Publication in the Serbo-Croat language.
language
FBcv:0000274
Serbo-Croat
Publication in the Serbo-Croat language.
FBC:MMC
Publication in the Slovak language.
language
FBcv:0000275
Slovak
Publication in the Slovak language.
FBC:MMC
Publication in the Slovenian language.
language
FBcv:0000276
Slovenian
Publication in the Slovenian language.
FBC:MMC
Publication in the Spanish language.
language
FBcv:0000277
Spanish
Publication in the Spanish language.
FBC:MMC
Publication in the Swedish language.
language
FBcv:0000278
Swedish
Publication in the Swedish language.
FBC:MMC
Publication in the Turkish language.
language
FBcv:0000279
Turkish
Publication in the Turkish language.
FBC:MMC
Publication in the Ukrainian language.
language
FBcv:0000280
Ukrainian
Publication in the Ukrainian language.
FBC:MMC
Publication in the Yiddish language.
language
FBcv:0000281
Yiddish
Publication in the Yiddish language.
FBC:MMC
Rank that describes the usefulness of mutants according to their phenotype.
scorability
FBcv:0000282
mutant scorability rank
Rank that describes the usefulness of mutants according to their phenotype.
FBC:MMC
The RK1 rank describes mutants that are easily scored.
scorability
FBcv:0000283
RK1
The RK1 rank describes mutants that are easily scored.
FlyBase:FBrf0066905
The RK2 rank describes mutants that are usable but less convenient.
scorability
FBcv:0000284
RK2
The RK2 rank describes mutants that are usable but less convenient.
FlyBase:FBrf0066905
The RK3 rank describes mutants that are of limited usefulness.
scorability
FBcv:0000285
RK3
The RK3 rank describes mutants that are of limited usefulness.
FlyBase:FBrf0066905
Term that describes the type of allele.
allele morphy class
allele_class
FBcv:0000286
allele class
Term that describes the type of allele.
FBC:MMC
An allele that either makes no functional gene product, makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type.
allele_class
FBcv:0000287
Loss of function alleles are generally, but not exclusively, recessive. At haplo-insufficient loci (loci that require two copies for normal function), loss of function alleles can be dominant.
loss of function allele
An allele that either makes no functional gene product, makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type.
FlyBase:FBrf0049147
An allele inferred to completely lack function from the observation that addition of extra copies in the genome has no effect on the phenotype. Most commonly, evidence takes the form of the observation that the phenotype of homozygotes (2 copies) is identical to that seen when the allele is in trans to a deletion of the gene (1 copy).
allele_class
FBcv:0000288
amorphic allele - genetic evidence
An allele inferred to completely lack function from the observation that addition of extra copies in the genome has no effect on the phenotype. Most commonly, evidence takes the form of the observation that the phenotype of homozygotes (2 copies) is identical to that seen when the allele is in trans to a deletion of the gene (1 copy).
FlyBase:FBrf0002371
FlyBase:FBrf0049147
Allele inferred to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity from the observation that extra copies in the genome decrease the expressivity and/or penetrance of the phenotype. Most commonly this evidence takes the form of experiments showing that the homozygote (2 copies) has a weaker phenotype than the allele in trans to a deletion of the gene (1 copy)).
allele_class
FBcv:0000289
hypomorphic allele - genetic evidence
Allele inferred to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity from the observation that extra copies in the genome decrease the expressivity and/or penetrance of the phenotype. Most commonly this evidence takes the form of experiments showing that the homozygote (2 copies) has a weaker phenotype than the allele in trans to a deletion of the gene (1 copy)).
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that either makes a normally functioning gene product but at higher levels or in a different spatial or temporal pattern to wild-type, or a product with increased or novel activity compared to wild-type.
allele_class
FBcv:0000290
Gain of function alleles are generally dominant. But not all dominant alleles are gain of function alleles.
gain of function allele
An allele that either makes a normally functioning gene product but at higher levels or in a different spatial or temporal pattern to wild-type, or a product with increased or novel activity compared to wild-type.
FlyBase:FBrf0049147
An allele that is inferred to make a gene product with a novel function or expression pattern compared to wild-type based on the evidence that the phenotype is unaffected by extra or fewer doses of the wild-type gene.
allele_class
FBcv:0000291
neomorphic allele - genetic evidence
An allele that is inferred to make a gene product with a novel function or expression pattern compared to wild-type based on the evidence that the phenotype is unaffected by extra or fewer doses of the wild-type gene.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that is inferred to make a gene product that is antagonistic to the wild-type gene product from the observations that extra copies of the wild-type allele reduce the expressivity and/or penetrance of the phenotype. So, the phenotype over a deficiency is stronger than that over a wild-type allele, which in turn is stronger than that in the presence of a duplication of the wild-type locus. This test is similar to that used for hypomorphic alleles. An antimorph can be distinguished from a dominant hypermorph as only the former can be reverted to wild-type by deletion of the mutant allele.
allele_class
FBcv:0000292
antimorphic allele - genetic evidence
An allele that is inferred to make a gene product that is antagonistic to the wild-type gene product from the observations that extra copies of the wild-type allele reduce the expressivity and/or penetrance of the phenotype. So, the phenotype over a deficiency is stronger than that over a wild-type allele, which in turn is stronger than that in the presence of a duplication of the wild-type locus. This test is similar to that used for hypomorphic alleles. An antimorph can be distinguished from a dominant hypermorph as only the former can be reverted to wild-type by deletion of the mutant allele.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred to make either increased amounts of a normal gene product or a gene product with normal function but increased activity compared to wild-type from the observation that extra copies in the genome increase the expressivity and/or penetrance of the phenotype. Most commonly this evidence takes the form of experiments showing that homozygotes (2 copies) have a stronger phenotype than transheterozygotes to a deletion of the gene (1 copy).
allele_class
FBcv:0000293
hypermorphic allele - genetic evidence
An allele inferred to make either increased amounts of a normal gene product or a gene product with normal function but increased activity compared to wild-type from the observation that extra copies in the genome increase the expressivity and/or penetrance of the phenotype. Most commonly this evidence takes the form of experiments showing that homozygotes (2 copies) have a stronger phenotype than transheterozygotes to a deletion of the gene (1 copy).
FlyBase:FBrf0002371
FlyBase:FBrf0049147
Allele that corresponds to the wild-type one.
allele_class
FBcv:0000294
wild-type allele
Allele that corresponds to the wild-type one.
FBC:MMC
Wild-type allele that can be distinguished from others.
allele_class
FBcv:0000295
wild-type generic
Wild-type allele that can be distinguished from others.
FBC:MMC
Wild-type allele that can only be distinguished from another one under special conditions.
allele_class
FBcv:0000296
isoallele
Wild-type allele that can only be distinguished from another one under special conditions.
FlyBase:FBrf0202435
FlyBase miscellaneous CV
FBcv:0000297
extracted wild-type chromosome 1
true
A phenotypic attribute is described as recessive when it is manifest only in individuals homozygous or hemizygous for the allele that causes that phenotype.
dominance_qualifier
FBcv:0000298
recessive
A phenotypic attribute is described as recessive when it is manifest only in individuals homozygous or hemizygous for the allele that causes that phenotype.
ISBN:978-0-8053-0316-2
A phenotypic attribute is described as dominant when it is manifest in individuals heterozygous for the allele that causes that phenotype.
dominance_qualifier
FBcv:0000299
dominant
A phenotypic attribute is described as dominant when it is manifest in individuals heterozygous for the allele that causes that phenotype.
ISBN:978-0-8053-0316-2
A phenotypic attribute is described as codominant when it is manifest in individuals carrying the allele that causes that phenotype, irrespective of the homologous allele.
dominance_qualifier
FBcv:0000300
codominant
A phenotypic attribute is described as codominant when it is manifest in individuals carrying the allele that causes that phenotype, irrespective of the homologous allele.
ISBN:978-0-8053-0316-2
A phenotypic attribute is described as semidominant when individuals heterozygous for the allele show phenotypes part way between homozygotes for either allele.
dominance_qualifier
FBcv:0000301
semidominant
A phenotypic attribute is described as semidominant when individuals heterozygous for the allele show phenotypes part way between homozygotes for either allele.
ISBN:978-0-8053-0316-2
FlyBase miscellaneous CV
FBcv:0000302
extracted wild-type chromosome 2
true
FlyBase miscellaneous CV
FBcv:0000303
extracted wild-type chromosome 3
true
FlyBase miscellaneous CV
FBcv:0000304
extracted wild-type chromosome 4
true
FlyBase miscellaneous CV
FBcv:0000305
extracted wild-type chromosome Y
true
Expression is limited to one or other sex by virtue of the particular biology of that sex, rather than the sex-linkage of the genes underlying the attribute.
sex_qualifier
FBcv:0000306
May be used to qualify expression of phenotypes or of genes, transgenes etc.
sex limited
Expression is limited to one or other sex by virtue of the particular biology of that sex, rather than the sex-linkage of the genes underlying the attribute.
FlyBase:FBrf0075559
Expression is limited to males by virtue of the particular biology of males, rather than the sex-linkage of the gene(s) involved.
sex_qualifier
FBcv:0000307
May be used to qualify expression of phenotypes or of genes, transgenes etc.
male limited
Expression is limited to males by virtue of the particular biology of males, rather than the sex-linkage of the gene(s) involved.
FlyBase:FBrf0075559
Expression is limited to females by virtue of the particular biology of females, rather than the sex-linkage of the gene(s) involved.
sex_qualifier
FBcv:0000308
May be used to qualify expression of phenotypes or of genes, transgenes etc.
female limited
Expression is limited to females by virtue of the particular biology of females, rather than the sex-linkage of the gene(s) involved.
FlyBase:FBrf0075559
Phenotype expressed only under specific environmental conditions that do not induce the same defect in wild-type animals.
environmental_qualifier
conditional qualifier
FBcv:0000309
conditional
Phenotype expressed only under specific environmental conditions that do not induce the same defect in wild-type animals.
FBC:DOS
Phenotype only expressed in some subset of the temperature range within which wild-type animals are viable.
environmental_qualifier
FBcv:0000310
temperature conditional
Phenotype only expressed in some subset of the temperature range within which wild-type animals are viable.
FBC:DOS
Phenotype only expressed at high temperatures.
conditional - heat sensitive
conditional ts
hs
environmental_qualifier
FBcv:0000311
heat sensitive
Phenotype only expressed at high temperatures.
FBC:DOS
Phenotype only expressed at low temperatures.
conditional - cold sensitive
conditional cs
cs
environmental_qualifier
FBcv:0000312
cold sensitive
Phenotype only expressed at low temperatures.
FBC:DOS
Phenotype expressed only in the presence of some specific drug (CHEBI:23888) whose presence does not induce the same defect in wild-type animals.
environmental_qualifier
FBcv:0000313
drug conditional
Phenotype expressed only in the presence of some specific drug (CHEBI:23888) whose presence does not induce the same defect in wild-type animals.
FBC:DOS
Phenotype expressed only in the presence of RU486 (CHEBI:50692), also known as mifepristone.
conditional RU486
conditional mifepristone
environmental_qualifier
FBcv:0000314
RU486 conditional
Phenotype expressed only in the presence of RU486 (CHEBI:50692), also known as mifepristone.
FBC:DOS
Phenotype expressed only in the presence of tetracycline (CHEBI:27902).
conditional tetracycline
environmental_qualifier
FBcv:0000315
tetracycline conditional
Phenotype expressed only in the presence of tetracycline (CHEBI:27902).
FBC:DOS
Phenotype that is the partial or full transformation of one or more segments (FBbt:00000003) or segmental appendages from one identity to another. For example, in antennapedia an antenna is partially or fully transformed into a leg.
phenotypic_class
FBcv:0000316
fbcvsubset_mgiribbons
homeotic
Phenotype that is the partial or full transformation of one or more segments (FBbt:00000003) or segmental appendages from one identity to another. For example, in antennapedia an antenna is partially or fully transformed into a leg.
FBC:DOS
FlyBase miscellaneous CV
FBcv:0000317
isogenic chromosome 1
true
FlyBase miscellaneous CV
FBcv:0000318
isogenic chromosome 2
true
Expression across a contiguous block of two or more segments of the blastoderm.
embryonic_pattern_qualifier
FBcv:0000319
gap expression pattern
Expression across a contiguous block of two or more segments of the blastoderm.
FBC:DOS
Expression in the terminal regions of the embryo/larva: the acron, telson and adjacent segments.
embryonic_pattern_qualifier
terminal
FBcv:0000320
terminal expression pattern
Expression in the terminal regions of the embryo/larva: the acron, telson and adjacent segments.
FBC:DOS
FlyBase miscellaneous CV
FBcv:0000321
isogenic chromosome 3
true
Expression in alternate segments of the blastoderm.
embryonic_pattern_qualifier
FBcv:0000322
pair rule expression pattern
Expression in alternate segments of the blastoderm.
FBC:DOS
Qualifier that describes an expression pattern of a segment polarity gene. Expression is observed in a specific location in each segment.
embryonic_pattern_qualifier
FBcv:0000323
segment polarity expression pattern
Qualifier that describes an expression pattern of a segment polarity gene. Expression is observed in a specific location in each segment.
FBC:MMC
Phenotype that is a defect in dorsal/ventral axis specification (GO:0009950). 'dorsal/ventral axis specification' is defined as: '$sub_GO:0009950'
phenotypic_class
dorsal-ventral polarity
FBcv:0000324
dorsal/ventral axis specification defective
Phenotype that is a defect in dorsal/ventral axis specification (GO:0009950). 'dorsal/ventral axis specification' is defined as: '$sub_GO:0009950'
FBC:DOS
dorsal-ventral polarity
FBC:DOS
A phenotype that is an expansion of the developing embryonic nervous system at the expense of developing ventral epidermis.
djs93
2011-09-13T02:42:10Z
phenotypic_class
FBcv:0000325
fbcvsubset_mgiribbons
Typically this is caused by and expansion of the population of neuroblasts at the expense of prospective epidermis, both of which originate in the ventral ectoderm.
neurogenic phenotype
A phenotype that is an expansion of the developing embryonic nervous system at the expense of developing ventral epidermis.
FlyBase:FBrf0040185
FlyBase miscellaneous CV
FBcv:0000326
isogenic chromosome 4
true
FlyBase miscellaneous CV
FBcv:0000327
P-element transposase source for transposable element mutagenesis
true
FlyBase miscellaneous CV
FBcv:0000328
hobo transposase source for transposable element mutagenesis
true
FlyBase miscellaneous CV
FBcv:0000329
piggyBac transposase source for transposable element mutagenesis
true
FlyBase miscellaneous CV
FBcv:0000330
minos transposase source for transposable element mutagenesis
true
FBcv:0000176
PATO:0001774
temporal_qualifier
FBcv:0000331
This term has been obsoleted because there are new terms to replace it [FBC:MMC]. mc161027
polyphasic
true
Qualifier that relates the expression of a phenotype to the sex of the individual.
sex qualifier
sex_qualifier
FBcv:0000332
sex
Qualifier that relates the expression of a phenotype to the sex of the individual.
FBC:MMC
sex qualifier
FBC:DOS
Expressed in males.
sex_qualifier
FBcv:0000333
This term has historically been used as a qualifier for expression and phenotype, but its use for phenotype has been deprecated. Its use does not imply expression exclusively in males.
male
Expressed in males.
FBC:DOS
Expressed in females.
sex_qualifier
FBcv:0000334
This term has historically been used as a qualifier for expression and phenotype, but its use for phenotype has been deprecated. Its use does not imply expression exclusively in females.
female
Expressed in females.
FBC:DOS
A clone of germline cells that share a genotype.
germ-line clone
clone_qualifier
FBcv:0000335
germline clone
A clone of germline cells that share a genotype.
FBC:DOS
A clone of somatic cells that share a genotype that is different from the genotype of the animal in which it resides and from which it is derived.
clone_qualifier
FBcv:0000336
somatic clone
A clone of somatic cells that share a genotype that is different from the genotype of the animal in which it resides and from which it is derived.
FBC:DOS
FlyBase miscellaneous CV
FBcv:0000337
P-element ammunition for transposable element mutagenesis
true
FlyBase miscellaneous CV
FBcv:0000338
hobo ammunition for transposable element mutagenesis
true
FBcv:0000811
extent
FBcv:0000339
DEPRECATION WARNING: This term has been obsoleted as 'fully' is assumed in the absence of use of 'partially'. mc151118
fully
true
Incomplete penetrance or expressivity of a phenotype or incomplete suppression of a phenotype.
extent
FBcv:0000340
Note on usage: This qualifier should not be used in combination with lethal, viable, sterile or fertile. For these cases, terms of the form semi-X should be used instead.
partially
Incomplete penetrance or expressivity of a phenotype or incomplete suppression of a phenotype.
FBC:DOS
FBcv:0000811
intensity_qualifier
FBcv:0000341
This term has been obsoleted as it should be assumed a phenotype is good, unless it is said otherwise, by using other qualifiers. mc151118
good
true
Qualifier that describes a phenotype that has poor penetrance or expressivity.
intensity_qualifier
FBcv:0000342
poor
Qualifier that describes a phenotype that has poor penetrance or expressivity.
FBC:MMC
Qualifier that describes a phenotype that has reduced penetrance or expressivity when compared to wild-type.
intensity_qualifier
FBcv:0000343
reduced
Qualifier that describes a phenotype that has reduced penetrance or expressivity when compared to wild-type.
FBC:MMC
Qualifier that describes an electrophoretic migration of a gene product that is slower than the wild-type.
PATO:0000304
intensity_qualifier
FBcv:0000344
slow
Qualifier that describes an electrophoretic migration of a gene product that is slower than the wild-type.
FBC:MMC
Qualifier that describes an electrophoretic migration of a gene product that is intermediate in speed compared to the wild-type.
PATO:0000303
intensity_qualifier
FBcv:0000345
fast
Qualifier that describes an electrophoretic migration of a gene product that is intermediate in speed compared to the wild-type.
FBC:MMC
Qualifier that describes a phenotype that is intermediate in speed compared to the wild-type.
intensity_qualifier
FBcv:0000346
This qualifier can be used to describe an electrophoretic migration of a gene product that is intermediate in speed compared to the wild-type.
intermediate
Qualifier that describes a phenotype that is intermediate in speed compared to the wild-type.
FBC:MMC
phenotypic_class
FBcv:0000347
phenotypic class
The canonical phenotype of a wild-type Drosophilid.
phenotypic_class
FBcv:0000348
wild-type
The canonical phenotype of a wild-type Drosophilid.
FBC:DOS
A phenotype that is survival to mature adulthood, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
FBcv:0000349
fbcvsubset_mgiribbons
Note, this term should not be used with the qualifier 'partially'. Use semi-viable or semi-lethal instead.
viable
A phenotype that is survival to mature adulthood, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
5
50
A phenotype of a population that is the death of some significant proportion of animals in that population, but less that half, prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
semi-viable
phenotypic_class
FBcv:0000350
partially lethal - majority live
A phenotype of a population that is the death of some significant proportion of animals in that population, but less that half, prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
FBcv:0000351
Note on usage: lethal is appropriate in cases where escaper adults are very rare. The lethal phase prior to becoming a mature adult may be further specified using children terms which specify stage.
lethal
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
FBC:KM
50
98
A phenotype of a population that is the death of a majority of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
semi-lethal
phenotypic_class
FBcv:0000352
Stages during which there is significant death prior to mature adulthood can be indicated using one or more stage qualifiers.
partially lethal - majority die
A phenotype of a population that is the death of a majority of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
FBC:KM
FBC:NB
A phenotype that is a failure of mutant cells to survive.
phenotypic_class
FBcv:0000353
fbcvsubset_mgiribbons
Typically, this phenotype is assayed in clones of cells.
cell lethal
A phenotype that is a failure of mutant cells to survive.
FBC:DOS
A post-embryonic, macroscopic, anatomical phenotype.
phenotypic_class
FBcv:0000354
fbcvsubset_mgiribbons
visible
A post-embryonic, macroscopic, anatomical phenotype.
FBC:DOS
Phenotype that is a defect in eye color compared to wild-type.
eye colour defective
phenotypic_class
FBcv:0000355
eye color defective
Phenotype that is a defect in eye color compared to wild-type.
FBC:DOS
A phenotype that is a defect in body color compared to wild-type.
body colour defective
phenotypic_class
FBcv:0000356
body color defective
A phenotype that is a defect in body color compared to wild-type.
FBC:DOS
A phenotype that is a defect in the size of the whole body or some body part compared to wild-type.
phenotypic_class
FBcv:0000357
fbcvsubset_mgiribbons
size defective
A phenotype that is a defect in the size of the whole body or some body part compared to wild-type.
FBC:DOS
Phenotype that is a decrease in body size compared to identically raised wild-type controls.
phenotypic_class
FBcv:0000358
small body
Phenotype that is a decrease in body size compared to identically raised wild-type controls.
FBC:DOS
Phenotype that is a decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth - there may be fewer cells in an otherwise normal volume of tissue.
reduced cell number
phenotypic_class
FBcv:0000359
decreased cell number
Phenotype that is a decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth - there may be fewer cells in an otherwise normal volume of tissue.
FBC:DOS
Phenotype that is a decrease in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth of a tissue - there may be more cells in an otherwise normal volume of tissue.
reduced cell size
phenotypic_class
FBcv:0000360
Note that defects in cell size are not necessarily the result of defects in cell growth. A change in the rate of cell division in the absence of any change in cell growth rate can result in smaller or larger cells.
decreased cell size
Phenotype that is a decrease in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth of a tissue - there may be more cells in an otherwise normal volume of tissue.
FBC:DOS
Phenotype that is an increase in body size compared to identically raised wild-type controls.
phenotypic_class
FBcv:0000361
large body
Phenotype that is an increase in body size compared to identically raised wild-type controls.
FBC:DOS
Phenotype that is an increase in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
phenotypic_class
FBcv:0000362
This phenotype is not necessarily accompanied by overgrowth of a tissue - there may be more cells in an otherwise normal volume of tissue. It is not necessarily due to an increase in cell growth -it may be the result of an increase in the division rate at normal growth rates. It may not even be due to an increase in the cell division rate - a reduced rate of cell death while the division rate is normal could also achieve it.
increased cell number
Phenotype that is an increase in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is an increase in the size of cells compared to wild-type.
phenotypic_class
FBcv:0000363
May be due to an increase in the cell growth rate or to a reduced rate of cell division along with a normal rate of cell growth.
increased cell size
Phenotype that is an increase in the size of cells compared to wild-type.
FBC:DOS
A phenotype that is the inability to produce a zygote.
phenotypic_class
FBcv:0000364
fbcvsubset_mgiribbons
The cause of sterility may be physical or behavioral. Note, this term should not be used with the qualifier 'partially'. Use semi-sterile or semi-fertile instead.
sterile
A phenotype that is the inability to produce a zygote.
FBC:DOS
A phenotype that is a reduction in the proportion of fertilized eggs produced to below 50% of wild-type.
phenotypic_class
FBcv:0000365
fbcvsubset_mgiribbons
semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced to below 50% of wild-type.
FBC:DOS
A phenotype that is the inability of females to mate and produce fertilized offspring.
phenotypic_class
FBcv:0000366
The cause of sterility may be physical or behavioral. Note: this term should not be used with the qualifier 'partially' - use semi-sterile or semi-fertile instead.
female sterile
A phenotype that is the inability of females to mate and produce fertilized offspring.
FBC:DOS
A phenotype that is a reduction in the proportion of fertilized eggs produced by females to below 50% of wild-type.
phenotypic_class
FBcv:0000367
female semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced by females to below 50% of wild-type.
FBC:DOS
A phenotype of female sterility due to defects in the female germline.
female sterile germ-line-dependent
phenotypic_class
FBcv:0000368
female sterile germline-dependent
A phenotype of female sterility due to defects in the female germline.
FBC:DOS
A phenotype of female sterility due to defects in somatic cells of the ovary (FBbt:00006030), or of the products of these cells (such as eggshell).
phenotypic_class
FBcv:0000369
female sterile soma-dependent
A phenotype of female sterility due to defects in somatic cells of the ovary (FBbt:00006030), or of the products of these cells (such as eggshell).
FBC:DOS
A phenotype that is the inability of males to mate and produce fertilized offspring.
phenotypic_class
FBcv:0000370
The cause of sterility may be physical or behavioral. Note - this term should not be used with the qualifier 'partially' - use semi-sterile or semi-fertile instead.
male sterile
A phenotype that is the inability of males to mate and produce fertilized offspring.
FBC:DOS
A phenotype that is a reduction in the proportion of fertilized eggs produced by males to below 50% of wild-type.
phenotypic_class
FBcv:0000371
male semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced by males to below 50% of wild-type.
FBC:DOS
A phenotype of male sterility due to defects in the male germline.
male sterile germ-line-dependent
phenotypic_class
FBcv:0000372
male sterile germline-dependent
A phenotype of male sterility due to defects in the male germline.
FBC:DOS
A phenotype of male sterility due to defects in somatic cells of the testis (FBbt:00006031) or of the products of these cells.
phenotypic_class
FBcv:0000373
male sterile soma-dependent
A phenotype of male sterility due to defects in somatic cells of the testis (FBbt:00006031) or of the products of these cells.
FBC:DOS
A phenotype that is the ability to mate and as a result produce fertilized eggs.
phenotypic_class
FBcv:0000374
fbcvsubset_mgiribbons
Note, this term should not be used with the qualifier 'partially'. Use semi-sterile or semi-fertile instead.
fertile
A phenotype that is the ability to mate and as a result produce fertilized eggs.
FBC:DOS
Phenotype that is a reduction in the proportion of fertilized eggs produced to, but only to > 50% of wild-type.
phenotypic_class
FBcv:0000375
fbcvsubset_mgiribbons
semi-fertile
Phenotype that is a reduction in the proportion of fertilized eggs produced to, but only to > 50% of wild-type.
FBC:DOS
A phenotype that is the ability of males to mate and as a result produce fertilized eggs.
phenotypic_class
FBcv:0000376
Note - this term should not be used with the qualifier 'partially' - use male semi-sterile or male semi-fertile instead.
male fertile
A phenotype that is the ability of males to mate and as a result produce fertilized eggs.
FBC:DOS
A phenotype that is the ability of females to mate and as a result produce fertilized eggs.
phenotypic_class
FBcv:0000377
Note - this term should not be used with the qualifier 'partially' - use female semi-sterile or female semi-fertile instead.
female fertile
A phenotype that is the ability of females to mate and as a result produce fertilized eggs.
FBC:DOS
A phenotype in which all offspring are sterile. Typically, this is due to maternal effect sterility resulting from defects in pole cell development.
phenotypic_class
FBcv:0000378
fbcvsubset_mgiribbons
grandchildless
A phenotype in which all offspring are sterile. Typically, this is due to maternal effect sterility resulting from defects in pole cell development.
ISBN:978-0-87969-321-3
Genotype g1 is an enhancer of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is greater than that caused by g2 alone.
phenotypic_class
FBcv:0000379
Typically, g2 is a chromosomal aberration or an insertion.
enhancer of variegation
Genotype g1 is an enhancer of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is greater than that caused by g2 alone.
FBC:DOS
Genotype g1 is a non-enhancer of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not greater than that caused by g2 alone.
phenotypic_class
FBcv:0000380
non-enhancer of variegation
Genotype g1 is a non-enhancer of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not greater than that caused by g2 alone.
FBC:DOS
Genotype g1 is a suppressor of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is less than that caused by to g2 alone.
phenotypic_class
FBcv:0000381
Typically, g2 is a chromosomal aberration or an insertion.
suppressor of variegation
Genotype g1 is a suppressor of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is less than that caused by to g2 alone.
FBC:DOS
Genotype g1 is a non-suppressor of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not less than that caused by g2 alone.
phenotypic_class
FBcv:0000382
non-suppressor of variegation
Genotype g1 is a non-suppressor of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not less than that caused by g2 alone.
FBC:DOS
A phenotype that is the inability to synthesize some organic compound that can be synthesized by wild-type animals, and that is required for normal growth and/or development.
phenotypic_class
FBcv:0000383
auxotroph
A phenotype that is the inability to synthesize some organic compound that can be synthesized by wild-type animals, and that is required for normal growth and/or development.
http://en.wikipedia.org/wiki/Auxotrophic
Phenotype that is a defect in aging (GO:0007568). 'aging' is defined as: '$sub_GO:0007568'
phenotypic_class
FBcv:0000384
fbcvsubset_mgiribbons
aging defective
Phenotype that is a defect in aging (GO:0007568). 'aging' is defined as: '$sub_GO:0007568'
GOC:PO_curators
5
Phenotype that is a shorter adult life-span than wild-type.
increased adult mortality
phenotypic_class
FBcv:0000385
short lived
Phenotype that is a shorter adult life-span than wild-type.
FBC:DOS
Phenotype that is a longer adult life-span than wild-type.
phenotypic_class
FBcv:0000386
fbcvsubset_mgiribbons
long lived
Phenotype that is a longer adult life-span than wild-type.
FBC:DOS
behaviour defective
behavioural
phenotypic_class
behavioral
FBcv:0000387
fbcvsubset_mgiribbons
behavior defective
Phenotype that is a change in the strong tendency, seen in wild-type Drosophila melanogaster, to climb - a behavior otherwise known as negative gravitaxis (GO:0048060 ; movement away from the source of gravity).
phenotypic_class
geotaxis behaviour defective
gravitaxis behavior defective
FBcv:0000388
fbcvsubset_mgiribbons
Note, this term should not be used when flies have climbing defects purely as a consequence of locomotion defects, use 'locomotor behavior defective' instead.
gravitaxis defective
Phenotype that is a change in the strong tendency, seen in wild-type Drosophila melanogaster, to climb - a behavior otherwise known as negative gravitaxis (GO:0048060 ; movement away from the source of gravity).
FBC:DOS
Phenotype that is a disposition to paralysis under conditions that do not cause paralysis in a wild-type animal. Paralysis is defined as an inability to exhibit `multicellular organismal movement` (GO:0050879)
phenotypic_class
FBcv:0000389
fbcvsubset_mgiribbons
paralytic
Phenotype that is a disposition to paralysis under conditions that do not cause paralysis in a wild-type animal. Paralysis is defined as an inability to exhibit `multicellular organismal movement` (GO:0050879)
FBC:DOS
A phenotype consisting of decreased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
phenotypic_class
FBcv:0000390
fbcvsubset_mgiribbons
hypoactive
A phenotype consisting of decreased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
FBC:DOS
A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis.
phenotypic_class
easily shocked
FBcv:0000391
bang sensitive
A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis.
FlyBase:FBrf0022877
easily shocked
FlyBase:FBrf0022877
A phenotype consisting of increased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
phenotypic_class
FBcv:0000392
fbcvsubset_mgiribbons
hyperactive
A phenotype consisting of increased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
FBC:DOS
Phenotype that is a defect in response to pain (GO:0048265). 'response to pain' is defined as: '$sub_GO:0048265'
phenotypic_class
FBcv:0000393
pain response defective
Phenotype that is a defect in response to pain (GO:0048265). 'response to pain' is defined as: '$sub_GO:0048265'
FBC:DOS
Phenotype that is a defect in circadian rhythm (GO:0007623). 'circadian rhythm' is defined as: '$sub_GO:0007623'
phenotypic_class
FBcv:0000394
fbcvsubset_mgiribbons
circadian rhythm defective
Phenotype that is a defect in circadian rhythm (GO:0007623). 'circadian rhythm' is defined as: '$sub_GO:0007623'
FBC:DOS
Phenotype that is a defect in locomotor rhythm (GO:0045475). 'locomotor rhythm' is defined as: '$sub_GO:0045475'
phenotypic_class
FBcv:0000395
locomotor rhythm defective
Phenotype that is a defect in locomotor rhythm (GO:0045475). 'locomotor rhythm' is defined as: '$sub_GO:0045475'
FBC:DOS
Phenotype that is a defect in eclosion rhythm (GO:0008062). 'eclosion rhythm' is defined as: '$sub_GO:0008062'
phenotypic_class
FBcv:0000396
eclosion rhythm defective
Phenotype that is a defect in eclosion rhythm (GO:0008062). 'eclosion rhythm' is defined as: '$sub_GO:0008062'
FBC:DOS
Phenotype that is a defect in learning (GO:0007612). 'learning' is defined as: '$sub_GO:0007612'
phenotypic_class
FBcv:0000397
learning defective
Phenotype that is a defect in learning (GO:0007612). 'learning' is defined as: '$sub_GO:0007612'
FBC:DOS
Phenotype that is a defect in memory (GO:0007613). 'memory' is defined as: '$sub_GO:0007613'
phenotypic_class
FBcv:0000398
memory defective
Phenotype that is a defect in memory (GO:0007613). 'memory' is defined as: '$sub_GO:0007613'
FBC:DOS
Phenotype that is a defect in courtship behavior (GO:0007619). 'courtship behavior' is defined as: '$sub_GO:0007619'
phenotypic_class
FBcv:0000399
courtship behavior defective
Phenotype that is a defect in courtship behavior (GO:0007619). 'courtship behavior' is defined as: '$sub_GO:0007619'
FBC:DOS
Phenotype that is a defect in mating (GO:0007618). 'mating' is defined as: '$sub_GO:0007618'
phenotypic_class
FBcv:0000400
fbcvsubset_mgiribbons
mating defective
Phenotype that is a defect in mating (GO:0007618). 'mating' is defined as: '$sub_GO:0007618'
FBC:DOS
Phenotype that is a defect in circadian mating behavior (GO:0035648). 'circadian mating behavior' is defined as: '$sub_GO:0035648'
phenotypic_class
FBcv:0000401
mating rhythm defective
Phenotype that is a defect in circadian mating behavior (GO:0035648). 'circadian mating behavior' is defined as: '$sub_GO:0035648'
FBC:DOS
Phenotype that is a defect in male courtship behavior, veined wing generated song production (GO:0045433). This is defined as '$sub_GO:0045433'
singing defective
song production defective
phenotypic_class
FBcv:0000402
song defective
Phenotype that is a defect in male courtship behavior, veined wing generated song production (GO:0045433). This is defined as '$sub_GO:0045433'
FBC:DOS
singing defective
FBC:SM
song production defective
FBC:SM
Phenotype that is a defect in chemosensory behavior (GO:0007635). 'chemosensory behavior' is defined as: '$sub_GO:0007635'.'
chemosensitive behaviour defective
phenotypic_class
FBcv:0000403
chemosensitive behavior defective
Phenotype that is a defect in chemosensory behavior (GO:0007635). 'chemosensory behavior' is defined as: '$sub_GO:0007635'.'
FBC:DOS
Phenotype that is a defect in sensory perception of smell (GO:0007608). 'sensory perception of smell' is defined as: '$sub_GO:0007608'
olfaction defective
phenotypic_class
FBcv:0000404
smell perception defective
Phenotype that is a defect in sensory perception of smell (GO:0007608). 'sensory perception of smell' is defined as: '$sub_GO:0007608'
FBC:DOS
Phenotype that is a defect in sensory perception of taste (GO:0050909). 'sensory perception of taste' is defined as: '$sub_GO:0050909'
gustation defective
taste defective
phenotypic_class
FBcv:0000405
taste perception defective
Phenotype that is a defect in sensory perception of taste (GO:0050909). 'sensory perception of taste' is defined as: '$sub_GO:0050909'
FBC:DOS
Phenotype that is a failure to exhibit proboscis extension reflex in response to a sugar stimulus via taste sensilla on the tarsus.
phenotypic_class
FBcv:0000406
tarsal response defective
Phenotype that is a failure to exhibit proboscis extension reflex in response to a sugar stimulus via taste sensilla on the tarsus.
FBC:DOS
Phenotype that is a defect in sensory perception of sound (GO:0007605). 'sensory perception of sound' is defined as: '$sub_GO:0007605'
phenotypic_class
auditory system defective
FBcv:0000407
auditory perception defective
Phenotype that is a defect in sensory perception of sound (GO:0007605). 'sensory perception of sound' is defined as: '$sub_GO:0007605'
FBC:DOS
Phenotype that is a defect in response to stress (GO:0006950). 'response to stress' is defined as: '$sub_GO:0006950'
environmental stress response defective
phenotypic_class
FBcv:0000408
fbcvsubset_mgiribbons
stress response defective
Phenotype that is a defect in response to stress (GO:0006950). 'response to stress' is defined as: '$sub_GO:0006950'
FBC:DOS
Phenotype that is a defect in response to osmotic stress (GO:0006970). 'response to osmotic stress' is defined as: '$sub_GO:0006970'
phenotypic_class
FBcv:0000409
osmotic stress response defective
Phenotype that is a defect in response to osmotic stress (GO:0006970). 'response to osmotic stress' is defined as: '$sub_GO:0006970'
FBC:DOS
Phenotype that is a defect in response to heat (GO:0009408). 'response to heat' is defined as: '$sub_GO:0009408'
phenotypic_class
FBcv:0000410
heat stress response defective
Phenotype that is a defect in response to heat (GO:0009408). 'response to heat' is defined as: '$sub_GO:0009408'
FBC:DOS
Phenotype that is a defect in visual behavior (GO:0007632). 'visual behavior' is defined as: '$sub_GO:0007632'
visual behaviour defective
phenotypic_class
FBcv:0000411
visual behavior defective
Phenotype that is a defect in visual behavior (GO:0007632). 'visual behavior' is defined as: '$sub_GO:0007632'
FBC:DOS
Phenotype that is a defect in optomotor response: a motor response during flight or walking that serves to stabilize both image formation on the retina and locomotor course.
optomotor behaviour defective
phenotypic_class
FBcv:0000412
optomotor response defective
Phenotype that is a defect in optomotor response: a motor response during flight or walking that serves to stabilize both image formation on the retina and locomotor course.
FBC:DOS
Phenotype that is a defect in phototaxis (GO:0042331). 'phototaxis' is defined as: '$sub_GO:0042331'
phenotypic_class
phototaxis behaviour defective
FBcv:0000413
fbcvsubset_mgiribbons
phototaxis defective
Phenotype that is a defect in phototaxis (GO:0042331). 'phototaxis' is defined as: '$sub_GO:0042331'
FBC:DOS
Phenotype that is a defect in locomotory behavior (GO:0007626). 'locomotory behavior' is defined as: '$sub_GO:0007626'
locomotor behaviour defective
phenotypic_class
FBcv:0000414
locomotor behavior defective
Phenotype that is a defect in locomotory behavior (GO:0007626). 'locomotory behavior' is defined as: '$sub_GO:0007626'
FBC:DOS
Phenotype that is a reduced ability to jump or a reduced jump response. This may be due to neurological or muscular defects.
phenotypic_class
FBcv:0000415
fbcvsubset_mgiribbons
jumping defective
Phenotype that is a reduced ability to jump or a reduced jump response. This may be due to neurological or muscular defects.
FBC:DOS
Phenotype that is a lack of normal co-ordination in locomotor activity.
phenotypic_class
FBcv:0000416
uncoordinated
Phenotype that is a lack of normal co-ordination in locomotor activity.
FBC:DOS
Phenotype that is a defect in flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
flight behaviour defective
phenotypic_class
FBcv:0000417
fbcvsubset_mgiribbons
This term is agnostic as to the causes of defects in flight. An animal's flight may be defective for mechanical, behavioral or sensory reasons.
flight defective
Phenotype that is a defect in flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
FBC:DOS
Phenotype that is the absence of flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
phenotypic_class
FBcv:0000418
This term is agnostic as to the causes of flightlessness. An animal may be flightless for mechanical or behavioral reasons.
flightless
Phenotype that is the absence of flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
FBC:DOS
Phenotype that is a defect in feeding behavior (GO:0007631). 'feeding behavior' is defined as: '$sub_GO:0007631'
feeding behaviour defective
phenotypic_class
FBcv:0000419
feeding behavior defective
Phenotype that is a defect in feeding behavior (GO:0007631). 'feeding behavior' is defined as: '$sub_GO:0007631'
FBC:DOS
Phenotype that is a defect in grooming behavior (GO:0007625). 'grooming behavior' is defined as: '$sub_GO:0007625'
grooming behaviour defective
phenotypic_class
FBcv:0000420
grooming behavior defective
Phenotype that is a defect in grooming behavior (GO:0007625). 'grooming behavior' is defined as: '$sub_GO:0007625'
FBC:DOS
Phenotype that is reduction in or loss of a stereotypical behavioral response to touch.
touch sensitivity defective
phenotypic_class
FBcv:0000421
This phenotype is commonly assayed by scoring larval avoidance responses following stroking of the thoracic segments (see Kernan et al., 1994). On its own, this is not sufficient evidence for a defect in sensory perception of touch, as motor defects can also cause this phenotype.
touch response defective
Phenotype that is reduction in or loss of a stereotypical behavioral response to touch.
FlyBase:FBrf0073546
Phenotype that is a defect in entrainment of circadian clock by photoperiod (GO:0043153), which is defined as: '$sub_GO:0043153'
phenotypic_class
FBcv:0000422
photoperiod response variant
Phenotype that is a defect in entrainment of circadian clock by photoperiod (GO:0043153), which is defined as: '$sub_GO:0043153'
FBC:DOS
Phenotype that is a defect in DNA repair (GO:0006281). 'DNA repair' is defined as: '$sub_GO:0006281'
phenotypic_class
FBcv:0000423
DNA repair defective
Phenotype that is a defect in DNA repair (GO:0006281). 'DNA repair' is defined as: '$sub_GO:0006281'
FBC:DOS
Phenotype that is a change in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type. This may be due to effects on the regulation of cell death (GO:0010941) or in cell death (GO:0008219) pathways themselves.
apoptosis defective
pcd defective
programmed cell death defective
phenotypic_class
FBcv:0000424
fbcvsubset_mgiribbons
cell death defective
Phenotype that is a change in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type. This may be due to effects on the regulation of cell death (GO:0010941) or in cell death (GO:0008219) pathways themselves.
FBC:DOS
Phenotype that is an increase in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
pcd increase
programmed cell death increase
phenotypic_class
FBcv:0000425
increased cell death
Phenotype that is an increase in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is a decrease in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
pcd decrease
programmed cell death decrease
phenotypic_class
FBcv:0000426
decreased cell death
Phenotype that is a decrease in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is a defect in cell growth (GO:0016049). 'cell growth' is defined as: '$sub_GO:0016049'
phenotypic_class
FBcv:0000427
fbcvsubset_mgiribbons
Note that defects in cell size are not necessarily the result of defects in cell growth. A change in the rate of cell division in the absence of any change in cell growth rate can result in smaller or larger cells.
cell growth defective
Phenotype that is a defect in cell growth (GO:0016049). 'cell growth' is defined as: '$sub_GO:0016049'
FBC:DOS
Phenotype that is a defect in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
phenotypic_class
FBcv:0000428
fbcvsubset_mgiribbons
cell size defective
Phenotype that is a defect in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is a defect in the shape (PATO:0000052) of some cell compared to wild-type.
phenotypic_class
FBcv:0000429
fbcvsubset_mgiribbons
cell shape defective
Phenotype that is a defect in the shape (PATO:0000052) of some cell compared to wild-type.
FBC:DOS
Phenotype that is a defect in the asymmetric distribution of components within a cell. For example an epithelial cell is 'cell polarity defective' if it lacks the normal asymmetric distribution of proteins or cell components such as junctions or villi along its apical-basal axis.
phenotypic_class
FBcv:0000430
fbcvsubset_mgiribbons
cell polarity defective
Phenotype that is a defect in the asymmetric distribution of components within a cell. For example an epithelial cell is 'cell polarity defective' if it lacks the normal asymmetric distribution of proteins or cell components such as junctions or villi along its apical-basal axis.
FBC:DOS
Phenotype that is a defect in meiotic cell cycle (GO:0051321). 'meiotic cell cycle' is defined as: '$sub_GO:0051321'
phenotypic_class
meiotic
FBcv:0000431
meiotic cell cycle defective
Phenotype that is a defect in meiotic cell cycle (GO:0051321). 'meiotic cell cycle' is defined as: '$sub_GO:0051321'
FBC:DOS
Phenotype that is a defect in mitotic cell cycle (GO:0000278). 'mitotic cell cycle' is defined as: '$sub_GO:0000278'
phenotypic_class
mitotic
FBcv:0000432
mitotic cell cycle defective
Phenotype that is a defect in mitotic cell cycle (GO:0000278). 'mitotic cell cycle' is defined as: '$sub_GO:0000278'
FBC:DOS
Phenotype that is a defect in cytokinesis (GO:0000910). 'cytokinesis' is defined as: '$sub_GO:0000910'
phenotypic_class
FBcv:0000433
cytokinesis defective
Phenotype that is a defect in cytokinesis (GO:0000910). 'cytokinesis' is defined as: '$sub_GO:0000910'
FBC:DOS
Phenotype that is a defect in the electrophysiological properties of some class of neurons, muscles or anatomical structure of the nervous system. Examples of these phenotypes at the neuron class level include defects in spontaneous or evoked excitatory junction potential. Examples at a more gross anatomical level include abnormal retinal electrophysiology (e.g.- measured by an electroretinogram).
phenotypic_class
FBcv:0000434
fbcvsubset_mgiribbons
neurophysiology defective
Phenotype that is a defect in the electrophysiological properties of some class of neurons, muscles or anatomical structure of the nervous system. Examples of these phenotypes at the neuron class level include defects in spontaneous or evoked excitatory junction potential. Examples at a more gross anatomical level include abnormal retinal electrophysiology (e.g.- measured by an electroretinogram).
FBC:DOS
Phenotype that is a defect in nervous system (FBbt:00005093). 'nervous system' is defined as: '$sub_FBbt:00005093'
phenotypic_class
FBcv:0000435
fbcvsubset_mgiribbons
neuroanatomy defective
Phenotype that is a defect in nervous system (FBbt:00005093). 'nervous system' is defined as: '$sub_FBbt:00005093'
FBC:DOS
Phenotype that is a defect in sex determination (GO:0007530). 'sex determination' is defined as: '$sub_GO:0007530'
phenotypic_class
FBcv:0000436
fbcvsubset_mgiribbons
sex-determination defective
Phenotype that is a defect in sex determination (GO:0007530). 'sex determination' is defined as: '$sub_GO:0007530'
FBC:DOS
FBcv:0000436
phenotypic_class
FBcv:0000437
This term was obsoleted because it was felt that the evidence provided in papers is not enough to annotate with this term. mc161014
dosage compensation defective
true
Phenotype that is a difference in electrophoretic migration of a gene product compared to wild-type.
phenotypic_class
FBcv:0000438
electrophoretic variant
Phenotype that is a difference in electrophoretic migration of a gene product compared to wild-type.
FBC:DOS
Phenotype that is a decreased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
phenotypic_class
FBcv:0000439
fbcvsubset_mgiribbons
chemical resistant
Phenotype that is a decreased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
FBC:DOS
Phenotype that is an increased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
phenotypic_class
FBcv:0000440
fbcvsubset_mgiribbons
chemical sensitive
Phenotype that is an increased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
FBC:DOS
Phenotype that is a decreased tendency for radiation exposure to cause toxic effects.
phenotypic_class
FBcv:0000441
fbcvsubset_mgiribbons
radiation resistant
Phenotype that is a decreased tendency for radiation exposure to cause toxic effects.
FBC:DOS
Phenotype that is an increased tendency for radiation exposure to cause toxic effects.
phenotypic_class
FBcv:0000442
fbcvsubset_mgiribbons
radiation sensitive
Phenotype that is an increased tendency for radiation exposure to cause toxic effects.
FBC:DOS
Dominant phenotype consisting of short slender bristles and delayed development. Homozygotes are cell lethal.
phenotypic_class
FBcv:0000443
The phenotype may be a general result of mutations in essential components of the protein synthesis pathway, as a number of Minutes encode ribosomal proteins. In an animal that is heterozygous for a Minute mutation, cells with two wild-type alleles of the affected gene have a growth advantage. Many developmental studies take advantage of this fact to give somatic clones a growth advantage. The term 'Minute' should not be used to annotate the resulting phenotypes.
Minute
Dominant phenotype consisting of short slender bristles and delayed development. Homozygotes are cell lethal.
FlyBase:FBrf0066905
Phenotype that is an increase in size of a tissue or organ due to increased numbers of cells, where the affected tissue or organ maintains its normal form.
hyperplastic
phenotypic_class
FBcv:0000444
hyperplasia
Phenotype that is an increase in size of a tissue or organ due to increased numbers of cells, where the affected tissue or organ maintains its normal form.
ISBN:9780198506737
Phenotype that is characterized by the formation of abnormal masses of tissue (tumors) as the result of neoplasia.
phenotypic_class
FBcv:0000445
tumorigenic
Phenotype that is characterized by the formation of abnormal masses of tissue (tumors) as the result of neoplasia.
FBC:DOS
Phenotype characterized by the formation of lumps of melanotic tissue inside the body in the absence of foreign bodies.
melanotic 'tumor'
phenotypic_class
FBcv:0000446
Melanotic capsules are formed around foreign bodies in wild-type animals as part of the immune response, for example as a protection against parasitoid wasps. Some, but not all melanotic mass phenotypes involve ectopic activation of this immune response. While melanotic masses are commonly referred to as melanotic tumors in the historical literature, this is a misnomer as they are rarely neoplastic.
melanotic mass phenotype
Phenotype characterized by the formation of lumps of melanotic tissue inside the body in the absence of foreign bodies.
FlyBase:FBrf0094387
FlyBase:FBrf0194475
Phenotype characterized by closely associated necrosis and melanization.
phenotypic_class
FBcv:0000447
melanotic necrosis
Phenotype characterized by closely associated necrosis and melanization.
FlyBase:FBrf0155704
Phenotype that is a defect in immune response (GO:0006955). 'immune response' is defined as: '$sub_GO:0006955'
phenotypic_class
FBcv:0000448
fbcvsubset_mgiribbons
immune response defective
Phenotype that is a defect in immune response (GO:0006955). 'immune response' is defined as: '$sub_GO:0006955'
FBC:DOS
Phenotype that is a defect in establishment of planar polarity (GO:0001736). 'establishment of planar polarity' is defined as: '$sub_GO:0001736'
tissue polarity defective
phenotypic_class
FBcv:0000449
fbcvsubset_mgiribbons
For apical-basal polarity phenotypes of epithelia, the appropriate term is 'cell polarity defective'.
planar polarity defective
Phenotype that is a defect in establishment of planar polarity (GO:0001736). 'establishment of planar polarity' is defined as: '$sub_GO:0001736'
GOC:dph
Phenotype that is a change in the rate of some developmental process (GO:0032502) taking place prior to mature adulthood (defined as adult stage A3), compared to wild-type. Note, developmental processes include stages in development of the whole animal (e.g.- larval development) as well as specific sub-processes, such as dorsal closure.
phenotypic_class
FBcv:0000450
fbcvsubset_mgiribbons
A more complete formalization would require a clause specifying stage. It might be possible to do this in OWL using the same system as we are using for lethal phase.
developmental rate defective
Phenotype that is a change in the rate of some developmental process (GO:0032502) taking place prior to mature adulthood (defined as adult stage A3), compared to wild-type. Note, developmental processes include stages in development of the whole animal (e.g.- larval development) as well as specific sub-processes, such as dorsal closure.
FBC:DOS
Phenotype that is a defect in wound healing (GO:0042060). 'wound healing' is defined as: '$sub_GO:0042060'
phenotypic_class
FBcv:0000451
wound healing defective
Phenotype that is a defect in wound healing (GO:0042060). 'wound healing' is defined as: '$sub_GO:0042060'
GOC:bf
PMID:15269788
Describes the origin of the mutation that causes a phenotype.
origin_of_mutation
FBcv:0000452
origin of mutation
Describes the origin of the mutation that causes a phenotype.
FBC:MMC
FlyBase miscellaneous CV
FBcv:0000453
piggyBac ammunition for transposable element mutagenesis
true
FBcv:0000455
origin_of_mutation
FBcv:0000454
synthetic
true
DNA change introduced by using an in vitro construct. The sequence of the in vitro construct determines the type of change.
change induced by in vitro construct
origin_of_mutation
FBcv:0000455
in vitro construct
DNA change introduced by using an in vitro construct. The sequence of the in vitro construct determines the type of change.
FBC:MMC
Sequence change introduced by using an in vitro construct that contains a fusion of the regulatory region of one gene on to the coding region of another. Examples in FlyBase include heat shock constructs, FRT flip out constructs and reporter genes.
change induced by an in vitro construct - regulatory fusion
origin_of_mutation
in vitro construct | regulatory fusion
FBcv:0000456
Notes on usage: Use this, rather than 'in vitro construct - deletion', for families of promoter deletions. Thus, a family of deletions of eve promoters driving Ecol\\lacZ will have regulatory fusion, but not deletion, as their mutagen.
in vitro construct - regulatory fusion
Sequence change introduced by using an in vitro construct that contains a fusion of the regulatory region of one gene on to the coding region of another. Examples in FlyBase include heat shock constructs, FRT flip out constructs and reporter genes.
FBC:DOS
Sequence change introduced by using an in vitro construct that contains a in-frame fusion of the open reading frames from two or more genes. In FlyBase, the resulting genes may be classified as fusion genes or tagged genes.
change induced by an in vitro construct - coding region fusion
origin_of_mutation
in vitro construct | coding region fusion
FBcv:0000457
in vitro construct - coding region fusion
Sequence change introduced by using an in vitro construct that contains a in-frame fusion of the open reading frames from two or more genes. In FlyBase, the resulting genes may be classified as fusion genes or tagged genes.
FBC:DOS
Mutation induced by an in vitro construct that uses site directed mutagenesis to target a particular region of the gene.
mutation induced by an in vitro construct - site directed mutagenesis
origin_of_mutation
in vitro construct | site directed mutagenesis
FBcv:0000458
in vitro construct - site directed mutagenesis
Mutation induced by an in vitro construct that uses site directed mutagenesis to target a particular region of the gene.
FBC:DOS
Sequence change introduced by an in vitro construct generated by internal deletion of some genomic sequence or cDNA.
change induced by an in vitro construct - deletion
origin_of_mutation
in vitro construct | deletion
FBcv:0000459
in vitro construct - deletion
Sequence change introduced by an in vitro construct generated by internal deletion of some genomic sequence or cDNA.
FBC:DOS
Sequence change introduced by an in vitro construct containing a genomic fragment that partially or fully rescues loss of function mutations or deletions of the gene whose sequence it carries.
change induced by an in vitro construct - genomic fragment
origin_of_mutation
in vitro construct | genomic fragment
FBcv:0000460
Notes on usage: 1. This term is applicable whether or not rescue using the construct is complete. 2. When a smaller rescue fragment is derived from a larger, by deletion of one or both ends, the mutagen shall be 'in vitro construct | deletion', with the larger being stated as the progenitor allele.
in vitro construct - genomic fragment
Sequence change introduced by an in vitro construct containing a genomic fragment that partially or fully rescues loss of function mutations or deletions of the gene whose sequence it carries.
FBC:DOS
Sequence change introduced by an in vitro construct that contains the wild-type open reading frame of a gene (without introns), the expression of which is controlled by a wild-type promoter of the same gene. Such constructs are often generated by fusing a cDNA to a genomic region containing promoter sequences, or more rarely by deletion of introns and other non-essential sequences from a genomic region, leaving a wild type coding region and promoter intact.
change induced by an in vitro construct - minigene
origin_of_mutation
in vitro construct | minigene
FBcv:0000461
in vitro construct - minigene
Sequence change introduced by an in vitro construct that contains the wild-type open reading frame of a gene (without introns), the expression of which is controlled by a wild-type promoter of the same gene. Such constructs are often generated by fusing a cDNA to a genomic region containing promoter sequences, or more rarely by deletion of introns and other non-essential sequences from a genomic region, leaving a wild type coding region and promoter intact.
FBC:DOS
Sequence change introduced by an in vitro construct that uses site directed mutagenesis to target a particular region of the gene resulting in a change to the change to the amino acids sequence encodes..
change induced by an in vitro construct - amino acid replacement
origin_of_mutation
in vitro construct | amino acid replacement
FBcv:0000462
in vitro construct - amino acid replacement
Sequence change introduced by an in vitro construct that uses site directed mutagenesis to target a particular region of the gene resulting in a change to the change to the amino acids sequence encodes..
FBC:DOS
Sequence change introduced by an in vitro construct designed to generate dsRNA for RNA interference (RNAi) experiments.
change induced by an in vitro construct - RNAi
origin_of_mutation
in vitro construct | RNAi
FBcv:0000463
in vitro construct - RNAi
Sequence change introduced by an in vitro construct designed to generate dsRNA for RNA interference (RNAi) experiments.
FBC:DOS
FBcv:0000455
in vitro construct | other
origin_of_mutation
FBcv:0000464
in vitro construct - other
true
Mutation found in a natural population.
origin_of_mutation
FBcv:0000465
natural population
Mutation found in a natural population.
FBC:MMC
Mutation caused by exposure to a temperature that is higher or lower than 25 degrees Celsius.
mutation induced by temperature treatment
origin_of_mutation
environmental treatment
FBcv:0000466
temperature
Mutation caused by exposure to a temperature that is higher or lower than 25 degrees Celsius.
FBC:MMC
Mutation induced by exposure to temperature that is lower than 25 degrees Celsius.
mutation induced by cold treatment
origin_of_mutation
cold-treatment
FBcv:0000467
cold
Mutation induced by exposure to temperature that is lower than 25 degrees Celsius.
FBC:MMC
Mutation induced by exposure to a temperature that is higher than 25 degrees Celsius.
mutation induced by heat treatment
origin_of_mutation
heat-treatment
FBcv:0000468
heat
Mutation induced by exposure to a temperature that is higher than 25 degrees Celsius.
FBC:MMC
Mutation caused by a spontaneous event.
mutation induced by spontaneous event
origin_of_mutation
FBcv:0000469
spontaneous
Mutation caused by a spontaneous event.
FBC:MMC
Sequence change induced by the genetic exchange that takes place between DNA sequences.
change induced by recombination
origin_of_mutation
FBcv:0000470
recombination
Sequence change induced by the genetic exchange that takes place between DNA sequences.
FBC:MC
ISBN:978-0-8153-3218-3
Sequence change caused by a DNA recombination process that results in the unidirectional transfer of genetic material from a donor sequence to a highly homologous acceptor (GO:0035822).
change induced by gene conversion
origin_of_mutation
FBcv:0000471
Strictly, gene conversion (GO:0035822) defines only the endogenous process, not its use for engineered gene targeting.
gene conversion
Sequence change caused by a DNA recombination process that results in the unidirectional transfer of genetic material from a donor sequence to a highly homologous acceptor (GO:0035822).
PMID:17846636
Mutation caused by a recombination event that causes the unequal exchange of small intralocus regions, usually leading to the formation of duplication and deficiency products.
mutation induced by intralocus exchange
origin_of_mutation
FBcv:0000472
intralocus exchange
Mutation caused by a recombination event that causes the unequal exchange of small intralocus regions, usually leading to the formation of duplication and deficiency products.
FBC:MC
FlyBase:FBrf0014117
FlyBase:FBrf0202435
Sequence change caused by a recombination event that causes an unequal exchange of genetic material between homologous or non-homologous regions.
change induced by unequal recombination
origin_of_mutation
FBcv:0000473
unequal recombination
Sequence change caused by a recombination event that causes an unequal exchange of genetic material between homologous or non-homologous regions.
FlyBase:FBrf0202435
Sequence change caused by the exchange of genetic material during mitosis that occurs at crossing over, and more frequently between homologous chromosomes.
change induced by mitotic recombination
origin_of_mutation
FBcv:0000474
mitotic recombination
Sequence change caused by the exchange of genetic material during mitosis that occurs at crossing over, and more frequently between homologous chromosomes.
FlyBase:FBrf0202435
Sequence change caused by a recombination event between tandem repeats of rRNA genes that causes unequal chromatid exchange at crossing over and an increase in the number of functional copies. It causes a reversion from mutant to wild-type phenotype.
mutation induced by magnification
origin_of_mutation
FBcv:0000475
magnification
Sequence change caused by a recombination event between tandem repeats of rRNA genes that causes unequal chromatid exchange at crossing over and an increase in the number of functional copies. It causes a reversion from mutant to wild-type phenotype.
FlyBase:FBrf0202435
FlyBase:FBrf0218934
Mutation that is caused by a recombination event that causes the breakdown of compound chromosome arms resulting in duplications or deletions in proximal regions.
mutation induced by detachment
origin_of_mutation
FBcv:0000476
detachment
Mutation that is caused by a recombination event that causes the breakdown of compound chromosome arms resulting in duplications or deletions in proximal regions.
FBC:MC
FlyBase:FBrf0202435
Mutation caused by a recombination event between tandem repeats of rRNA genes that causes unequal chromatid exchange at crossing over and a reduction in the number of functional copies. It leads to an aggravation of phenotype, in the case of a mutation causing a change from a wildtype to mutant phenotype or a change from a mutant to a more severe mutant phenotype.
mutation induced by reduction
origin_of_mutation
FBcv:0000477
reduction
Mutation caused by a recombination event between tandem repeats of rRNA genes that causes unequal chromatid exchange at crossing over and a reduction in the number of functional copies. It leads to an aggravation of phenotype, in the case of a mutation causing a change from a wildtype to mutant phenotype or a change from a mutant to a more severe mutant phenotype.
FlyBase:FBrf0026874
Sequence change induced by a recombination event catalyzed by a recombinase that occurs at specific nucleotide sequences.
change induced by site specific recombination
origin_of_mutation
FBcv:0000478
site specific recombination
Sequence change induced by a recombination event catalyzed by a recombinase that occurs at specific nucleotide sequences.
FlyBase:FBrf0202435
ISBN:978-0-8153-3218-3
Sequence change caused by a site specific recombination event catalyzed by the tyrosine recombinase FLPase, that recognizes minimal FLP recombination target (FRT) sites of 34 base pairs. For site specific integration, the recombination site consists of 48 base pairs containing an additional isolated base pair and a third 13 base pair direct repeat.
change induced by FLPase recombination
origin_of_mutation
FBcv:0000479
FLPase
Sequence change caused by a site specific recombination event catalyzed by the tyrosine recombinase FLPase, that recognizes minimal FLP recombination target (FRT) sites of 34 base pairs. For site specific integration, the recombination site consists of 48 base pairs containing an additional isolated base pair and a third 13 base pair direct repeat.
FlyBase:FBrf0201927
UniProt:P03870
Sequence change caused by the cleavage of an 18 base pair DNA sequence by the I-SceI endonuclease.
change induced by I-SceI endonuclease cleavage
origin_of_mutation
SCEI endonuclease
FBcv:0000480
I-SceI
Sequence change caused by the cleavage of an 18 base pair DNA sequence by the I-SceI endonuclease.
FlyBase:FBrf0128625
UniProt:P03882
Sequence change induced by a site specific recombination event catalyzed by the tyrosine recombinase cre. Recombination is induced between two 34 base pairs loxP sites. These consist of two 13 base pair perfect inverted repeats flanking an 8 base pair asymmetric spacer that confers directionality.
change induced by cre recombinase recombination
origin_of_mutation
Cre recombinase
FBcv:0000481
cre recombinase
Sequence change induced by a site specific recombination event catalyzed by the tyrosine recombinase cre. Recombination is induced between two 34 base pairs loxP sites. These consist of two 13 base pair perfect inverted repeats flanking an 8 base pair asymmetric spacer that confers directionality.
FlyBase:FBrf0201927
PMID:6954485
UniProt:P06956
Sequence change induced by chromosomal segregation.
change induced by segregation
origin_of_mutation
FBcv:0000482
segregation
Sequence change induced by chromosomal segregation.
FBC:MMC
Mutation induced by the mobilization of a transposable element.
mutation induced by transposable element activity
origin_of_mutation
FBcv:0000483
transposable element activity
Mutation induced by the mobilization of a transposable element.
FBC:MC
FlyBase:FBrf0202435
Mutation caused by hybrid dysgenesis that results from the mobilization of the I-element retrotransposon.
mutation induced by IR-hybrid dysgenesis
origin_of_mutation
IR
FBcv:0000484
IR-hybrid dysgenesis
Mutation caused by hybrid dysgenesis that results from the mobilization of the I-element retrotransposon.
FlyBase:FBrf0202435
Mutation induced by hybrid dysgenesis caused by the mobilization of the Stalker transposable element.
mutation induced by Stalker-hybrid dysgenesis
origin_of_mutation
FBcv:0000485
Stalker-hybrid dysgenesis
Mutation induced by hybrid dysgenesis caused by the mobilization of the Stalker transposable element.
FlyBase:FBrf0202435
Mutation induced by the transposable activity caused by a P-element, a DNA transposable element. The P-element is 2.9 kilobases in length with 31 base pairs inverted terminal repeats. Upon insertion it generates a flanking duplication of 8 base pairs at the target site upon insertion. Mobilization is induced by the activity of a P-element transposase.
mutation induced by P-element activity
origin_of_mutation
FBcv:0000486
P-element activity
Mutation induced by the transposable activity caused by a P-element, a DNA transposable element. The P-element is 2.9 kilobases in length with 31 base pairs inverted terminal repeats. Upon insertion it generates a flanking duplication of 8 base pairs at the target site upon insertion. Mobilization is induced by the activity of a P-element transposase.
FlyBase:FBrf0202435
Mutation caused by hybrid dysgenesis that results from the action of the P-element.
mutation induced by PM hybrid dysgenesis
origin_of_mutation
FBcv:0000487
PM hybrid dysgenesis
Mutation caused by hybrid dysgenesis that results from the action of the P-element.
FlyBase:FBrf0202435
Mutation induced by the mobilization of a P-element by the Delta2-3 transposase. The source of Delta2-3 is a stable genomic integration from which the third intron has been deleted.
mutation induced by P-element mobilization by Delta2-3 transposase
origin_of_mutation
&Dgr;2-3
FBcv:0000488
Delta2-3 transposase
Mutation induced by the mobilization of a P-element by the Delta2-3 transposase. The source of Delta2-3 is a stable genomic integration from which the third intron has been deleted.
FlyBase:FBrf0202435
Mutation caused by a P-element that is inserted into the genome and that is used to create more insertions at other sites.
mutation induced by jumpstarter mobilization
origin_of_mutation
Js
Jumpstarter
FBcv:0000489
jumpstarter activity
Mutation caused by a P-element that is inserted into the genome and that is used to create more insertions at other sites.
FlyBase:FBrf0202435
Mutation caused by the mobilization of a P-element by the transposase produced from the helper plasmid p pi25.1. This plasmid is a P-element from which the 3' terminus has been deleted, making it unable to integrate into the host's DNA. It is missing a 23 base pairs deletion of the 3' terminus compared to p pi25.1wc.
mutation induced by P-element mobilization by p pi25.1 supplied transposase
origin_of_mutation
p pi25.1
p&pgr;25.1
FBcv:0000490
p pi25.1 supplied transposase
Mutation caused by the mobilization of a P-element by the transposase produced from the helper plasmid p pi25.1. This plasmid is a P-element from which the 3' terminus has been deleted, making it unable to integrate into the host's DNA. It is missing a 23 base pairs deletion of the 3' terminus compared to p pi25.1wc.
FlyBase:FBrf0202435
Mutation caused by the mobilization of a P-element by the transposase produced from the helper plasmid p pi25.7wc. This plasmid is a P-element from which the 3' terminus has been deleted, making it unable to integrate into the host's DNA. It has an additional 23 base pairs deletion of the 3' terminus compared to p pi25.1.
mutation induced by P-element mobilization by p pi25.7wc supplied transposase
origin_of_mutation
p pi25.7wc
p&pgr;25.7wc
FBcv:0000491
p pi25.7wc
Mutation caused by the mobilization of a P-element by the transposase produced from the helper plasmid p pi25.7wc. This plasmid is a P-element from which the 3' terminus has been deleted, making it unable to integrate into the host's DNA. It has an additional 23 base pairs deletion of the 3' terminus compared to p pi25.1.
FlyBase:FBrf0202435
Mutation caused by PM hybrid dysgenesis that is induced by the higher frequency of recombination in certain male chromosomes.
mutation induced by male recombination
origin_of_mutation
MR
FBcv:0000492
male recombination induced by dysgenesis
Mutation caused by PM hybrid dysgenesis that is induced by the higher frequency of recombination in certain male chromosomes.
FlyBase:FBrf0202435
Mutation caused by a male recombination event induced by a male recombination factor which is present in chromosomes extracted from a population in Haifa, Israel.
mutation induced by MRh12 male recombination
origin_of_mutation
MRh12
FBcv:0000493
MRh12 induced male recombination
Mutation caused by a male recombination event induced by a male recombination factor which is present in chromosomes extracted from a population in Haifa, Israel.
FlyBase:FBrf0202435
Mutation caused by a male recombination event in the second and third chromosomes induced by a male recombination factor which is present in chromosomes extracted from a population in Harlingen, Texas.
mutation induced by MRT007 male recombination
origin_of_mutation
MRT007
FBcv:0000494
MRT007 induced male recombination
Mutation caused by a male recombination event in the second and third chromosomes induced by a male recombination factor which is present in chromosomes extracted from a population in Harlingen, Texas.
FlyBase:FBrf0202435
Mutation caused by a male recombination event induced by a male recombination factor which is present in chromosomes extracted from a population in Patras, Greece.
mutation induced by MRF23.5 male recombination
origin_of_mutation
MRF23.5
FBcv:0000495
MRF23.5 induced male recombination
Mutation caused by a male recombination event induced by a male recombination factor which is present in chromosomes extracted from a population in Patras, Greece.
FlyBase:FBrf0202435
Mutation caused by a male recombination event induced by a male recombination factor which is present in chromosomes extracted from a population in Patras, Greece.
mutation induced by MRF31.1 male recombination
origin_of_mutation
MRF31.1
FBcv:0000496
MRF31.1 induced male recombination
Mutation caused by a male recombination event induced by a male recombination factor which is present in chromosomes extracted from a population in Patras, Greece.
FlyBase:FBrf0202435
Mutation induced by the transposable activity caused by hobo, a DNA transposable element. The hobo element is 3.0 kilobases in length with 12 base pairs inverted terminal repeats. After mobilization by the hobo transposase and upon insertion it generates a flanking duplication of 8 base pairs at the target site upon insertion.
mutation induced by hobo element activity
origin_of_mutation
FBcv:0000497
hobo activity
Mutation induced by the transposable activity caused by hobo, a DNA transposable element. The hobo element is 3.0 kilobases in length with 12 base pairs inverted terminal repeats. After mobilization by the hobo transposase and upon insertion it generates a flanking duplication of 8 base pairs at the target site upon insertion.
FlyBase:FBrf0202435
Mutation caused by hybrid dysgenesis that results from the mobilization of the hobo element.
mutation induced by hobo dysgenesis
origin_of_mutation
FBcv:0000498
hobo dysgenesis
Mutation caused by hybrid dysgenesis that results from the mobilization of the hobo element.
FlyBase:FBrf0202435
Mutation caused by the activity of the hobo element, mobilized by an hobo transposase which is produced from the supplied P-element helper plasmid HBL1.
mutation induced by Hobo transposase source HBL1
origin_of_mutation
Hobbled1
Hobo transposase source
FBcv:0000499
HBL1 supplied transposase
Mutation caused by the activity of the hobo element, mobilized by an hobo transposase which is produced from the supplied P-element helper plasmid HBL1.
FlyBase:FBrf0202435
Mutation induced by the transposable activity caused by mariner, a DNA transposable element. The mariner element is 1.3 kilobases in length with 28 base pairs inverted terminal repeats. It specifically targets TA dinucleotides and generates a flanking duplication of these two bases upon insertion. Mobilization is induced by the activity of the mariner transposase.
mutation induced by mariner activity
origin_of_mutation
FBcv:0000500
mariner activity
Mutation induced by the transposable activity caused by mariner, a DNA transposable element. The mariner element is 1.3 kilobases in length with 28 base pairs inverted terminal repeats. It specifically targets TA dinucleotides and generates a flanking duplication of these two bases upon insertion. Mobilization is induced by the activity of the mariner transposase.
FlyBase:FBrf0202435
Mutation induced by transposable activity caused by the gypsy retrovirus. The gypsy element is a 7.5 kilobases in length with 482 base pairs terminal repeats. Mobilization is induced by the activity of the gypsy element transposase.
mutation induced by gypsy element activity
origin_of_mutation
FBcv:0000501
gypsy element activity
Mutation induced by transposable activity caused by the gypsy retrovirus. The gypsy element is a 7.5 kilobases in length with 482 base pairs terminal repeats. Mobilization is induced by the activity of the gypsy element transposase.
FlyBase:FBrf0202435
Mutation induced by the transposable activity caused by piggyBac, a DNA transposable element. The piggyBac is 2.5 kilobases in length with 13 base pairs inverted terminal repeats. It specifically targets TTAA dinucleotides and generates a flanking duplication of these 4 base pairs upon insertion. Mobilization is induced by the activity of the piggyBac transposase.
mutation induced by piggyBac activity
origin_of_mutation
FBcv:0000502
piggyBac activity
Mutation induced by the transposable activity caused by piggyBac, a DNA transposable element. The piggyBac is 2.5 kilobases in length with 13 base pairs inverted terminal repeats. It specifically targets TTAA dinucleotides and generates a flanking duplication of these 4 base pairs upon insertion. Mobilization is induced by the activity of the piggyBac transposase.
FlyBase:FBrf0202435
Mutation induced by exposure to radiation.
mutation induced by irradiation
origin_of_mutation
FBcv:0000503
irradiation
Mutation induced by exposure to radiation.
FBC:MMC
Mutation induced by exposure to ionizing radiation.
mutation induced by ionizing irradiation
origin_of_mutation
FBcv:0000504
ionizing radiation
Mutation induced by exposure to ionizing radiation.
FBC:MMC
Mutation induced by exposure to alpha rays.
mutation induced by alpha ray irradiation
origin_of_mutation
&agr; ray
FBcv:0000505
alpha ray
Mutation induced by exposure to alpha rays.
FBC:MMC
Mutation induced by exposure to gamma rays.
mutation induced by gamma ray irradiation
origin_of_mutation
&ggr; ray
FBcv:0000506
gamma ray
Mutation induced by exposure to gamma rays.
FBC:MMC
Mutation induced by exposure to 60Co gamma rays.
mutation induced by 60Co gamma ray irradiation
origin_of_mutation
60Co &ggr; ray
FBcv:0000507
60Co gamma ray
Mutation induced by exposure to 60Co gamma rays.
FBC:MMC
Mutation induced by exposure to 137Cs gamma rays.
mutation induced by 137Cs gamma ray irradiation
origin_of_mutation
137Cs &ggr; ray
FBcv:0000508
137Cs gamma ray
Mutation induced by exposure to 137Cs gamma rays.
FBC:MMC
Mutation induced by exposure to 226Ra alpha rays.
mutation induced by 226Ra alpha ray irradiation
origin_of_mutation
226Ra &agr; ray
radium
FBcv:0000509
226Ra alpha ray
Mutation induced by exposure to 226Ra alpha rays.
FBC:MMC
Mutation induced by exposure to 32P radiation.
mutation induced by 32-P irradiation
origin_of_mutation
32-Phosphorous
FBcv:0000510
32P
Mutation induced by exposure to 32P radiation.
FBC:MMC
Mutation induced by exposure to 3H radiation.
mutation induced by 3H irradiation
origin_of_mutation
tritium
FBcv:0000511
3H
Mutation induced by exposure to 3H radiation.
FBC:MMC
Mutation induced by exposure to 3H-deoxycytidine radiation.
mutation induced by 3H-deoxycytidine irradiation
origin_of_mutation
FBcv:0000512
3H-deoxycytidine
Mutation induced by exposure to 3H-deoxycytidine radiation.
FBC:MMC
Mutation induced by exposure to 3H-thymidine radiation.
mutation induced by 3H-thymidine irradiation
origin_of_mutation
FBcv:0000513
3H-thymidine
Mutation induced by exposure to 3H-thymidine radiation.
FBC:MMC
Mutation induced by treatment in a Bevatron.
mutation induced by Bevatron irradiation
origin_of_mutation
FBcv:0000514
Bevatron
Mutation induced by treatment in a Bevatron.
FBC:MMC
Mutation induced by exposure to deuteron radiation.
mutation induced by deuteron irradiation
origin_of_mutation
FBcv:0000515
deuteron
Mutation induced by exposure to deuteron radiation.
FBC:MMC
Mutation induced by exposure to neutron radiation.
mutation induced by neutron irradiation
origin_of_mutation
FBcv:0000516
neutron
Mutation induced by exposure to neutron radiation.
FBC:MMC
Mutation induced by exposure to 252Cf fission neutron radiation.
mutation induced by 252Cf fission neutron irradiation
origin_of_mutation
FBcv:0000517
252Cf fission neutron
Mutation induced by exposure to 252Cf fission neutron radiation.
FBC:MMC
Mutation induced by exposure to X rays.
mutation induced by X ray irradiation
origin_of_mutation
FBcv:0000518
X ray
Mutation induced by exposure to X rays.
FBC:MMC
Mutation induced by exposure to non-ionizing radiation.
mutation induced by non-ionizing irradiation
origin_of_mutation
FBcv:0000519
non-ionizing radiation
Mutation induced by exposure to non-ionizing radiation.
FBC:MMC
Mutation induced by exposure to a magnetic field.
mutation induced by magnetic field irradiation
origin_of_mutation
FBcv:0000520
magnetic field
Mutation induced by exposure to a magnetic field.
FBC:MMC
Mutation induced by exposure to radio waves.
mutation induced by radio waves irradiation
origin_of_mutation
FBcv:0000521
radio waves
Mutation induced by exposure to radio waves.
FBC:MMC
Mutation induced by exposure to the stratosphere.
mutation induced by stratosphere irradiation
origin_of_mutation
FBcv:0000522
stratosphere
Mutation induced by exposure to the stratosphere.
FBC:MMC
Mutation induced by exposure to supersonic radiation.
mutation induced by supersonic irradiation
origin_of_mutation
FBcv:0000523
supersonic
Mutation induced by exposure to supersonic radiation.
FBC:MMC
Mutation induced by exposure to U.V. radiation.
mutation induced by U.V. irradiation
origin_of_mutation
FBcv:0000524
U.V.
Mutation induced by exposure to U.V. radiation.
FBC:MMC
.
mutation induced by chemical exposure
origin_of_mutation
FBcv:0000525
chemical
.
CHEBI:24431
.
mutation induced by alkylating agent exposure
origin_of_mutation
FBcv:0000526
alkylating agent
.
CHEBI:22333
.
mutation induced by diethyl sulfate exposure
origin_of_mutation
DES
FBcv:0000527
diethyl sulfate
.
CHEBI:34699
.
mutation induced by 2-chloroethyl methanesulfonate exposure
origin_of_mutation
CB1506
FBcv:0000528
2-chloroethyl methanesulfonate
.
CHEBI:19508
.
mutation induced by 2-fluoroethyl methanesulfonate exposure
origin_of_mutation
CB1522
FBcv:0000529
2-fluoroethyl methanesulfonate
.
CHEBI:19579
.
mutation induced by EMS exposure
mutation induced by ethyl methanesulfonate exposure
origin_of_mutation
CB1528
EMS
FBcv:0000530
ethyl methanesulfonate
.
CHEBI:23994
.
mutation induced by ENU exposure
mutation induced by ethyl nitrosourea exposure
origin_of_mutation
ENU
N-ethyl-N-nitrosourea
FBcv:0000531
ethyl nitrosourea
.
CHEBI:23995
N-ethyl-N-nitrosourea
CHEBI:23995
.
mutation induced by HMS exposure
mutation induced by hycanthon methanesulfonate exposure
origin_of_mutation
HMS
hycanthone mesylate
FBcv:0000532
hycanthon methanesulfonate
.
CHEBI:24624
hycanthone mesylate
CHEBI:24624
.
mutation induced by MMS exposure
mutation induced by methyl methanesulfonate exposure
origin_of_mutation
CB1540
MMS
FBcv:0000533
methyl methanesulfonate
.
CHEBI:25255
.
FBcv:0000536
mutation induced by bis(2-chloroethyl) sulfide exposure
mutation induced by mustard gas exposure
mutation induced by sulfur gas exposure
origin_of_mutation
1,1'-thiobis(2-chloroethane)
CB1735
mustard gas
sulfur mustard
FBcv:0000534
bis(2-chloroethyl) sulfide
.
CHEBI:25434
1,1'-thiobis(2-chloroethane)
CHEBI:25434
mustard gas
CHEBI:25434
sulfur mustard
CHEBI:25434
.
mutation induced by N-methyl-N'-nitro-N-nitrosoguanidine exposure
origin_of_mutation
MNNG
NNG
FBcv:0000535
N-methyl-N'-nitro-N-nitrosoguanidine
.
CHEBI:21759
true
FlyBase miscellaneous CV
FBcv:0000537
minos ammunition for transposable element mutagenesis
true
.
mutation induced by carbamate exposure
origin_of_mutation
FBcv:0000538
carbamate
.
CHEBI:13941
.
mutation induced by urethane exposure
origin_of_mutation
FBcv:0000539
urethane
.
CHEBI:17967
.
mutation induced by vinyl carbamate exposure
origin_of_mutation
FBcv:0000540
vinyl carbamate
.
CHEBI:27292
.
mutation induced by intercalating agent exposure
origin_of_mutation
FBcv:0000541
intercalating agent
.
CHEBI:24853
.
mutation induced by mitomycin C exposure
origin_of_mutation
FBcv:0000542
mitomycin C
.
CHEBI:27504
.
mutation induced by quinacrine mustard exposure
origin_of_mutation
2-methoxy-6-[3-(ethyl-2-chloroethyl)aminopropylamino]acridine
ICR 100
FBcv:0000543
Mapped to CHEBI on basis of synonym - quinacrine mustard. Originally primary name, ICR 100 is now relegated to a synonym.
quinacrine mustard
.
CHEBI:37595
ICR 100
CHEBI:37595
.
mutation induced by ICR 170 exposure
origin_of_mutation
2-methoxy-6-dichloro-9-(3-ethyl-2-chloroethyl-aminopropylamino)acridine-dihydrochloride
FBcv:0000544
ICR 170
.
CHEBI:21183
.
mutation induced by 1,2-dibromoethane exposure
origin_of_mutation
DBE
FBcv:0000545
1,2-dibromoethane
.
CHEBI:28534
.
mutation induced by 1,2-dichloroethane exposure
origin_of_mutation
DCE
FBcv:0000546
1,2-dichloroethane
.
CHEBI:27789
.
mutation induced by 1-bromo-2-chloroethane exposure
origin_of_mutation
BCE
FBcv:0000547
1-bromo-2-chloroethane
.
CHEBI:19032
.
origin_of_mutation
nucleobase analogue
FBcv:0000548
base analog
.
CHEBI:67142
nucleobase analogue
CHEBI:67142
.
mutation induced by 5-bromouracil exposure
origin_of_mutation
FBcv:0000549
5-bromouracil
.
CHEBI:20552
.
mutation induced by 5-bromouridine exposure
origin_of_mutation
FBcv:0000550
5-bromouridine
.
CHEBI:20553
.
mutation induced by enzyme inhibitor exposure
origin_of_mutation
FBcv:0000551
enzyme inhibitor
.
CHEBI:23924
.
mutation induced by aminopterin exposure
origin_of_mutation
FBcv:0000552
aminopterin
.
CHEBI:22526
.
inorganic molecular entity
mutation induced by inorganic compound exposure
origin_of_mutation
FBcv:0000553
inorganic compound
.
CHEBI:24835
inorganic molecular entity
CHEBI:24835
.
mutation induced by cupric sulfate
origin_of_mutation
copper(2+) sulfate
FBcv:0000554
cupric sulfate
.
CHEBI:23414
copper(2+) sulfate
CHEBI:23414
.
mutation induced by H3BO3 exposure
origin_of_mutation
FBcv:0000555
H3BO3
.
CHEBI:33118
.
mutation induced by sodium bisulphite exposure
origin_of_mutation
FBcv:0000556
sodium bisulphite
.
CHEBI:26709
.
mutation induced by sodium fluoride exposure
origin_of_mutation
FBcv:0000557
sodium fluoride
.
CHEBI:28741
Mutation induced by exposure to epoxy hydrocarbon.
mutation induced by epoxy hydrocarbon exposure
origin_of_mutation
FBcv:0000558
epoxy hydrocarbon
Mutation induced by exposure to epoxy hydrocarbon.
FBC:MMC
.
mutation induced by diepoxybutane exposure
origin_of_mutation
DEB
erythritol anhydride
FBcv:0000559
diepoxybutane
.
CHEBI:23704
.
mutation induced by diepoxyoctane exposure
origin_of_mutation
1,2:7,8-diepoxyoctane
FBcv:0000560
diepoxyoctane
.
CHEBI:23705
1,2:7,8-diepoxyoctane
CHEBI:23705
FBcv:0000525
origin_of_mutation
FBcv:0000561
unclassified chemical
true
.
mutation induced by 1,2:5,6-dibenzanthracene exposure
origin_of_mutation
FBcv:0000562
1,2:5,6-dibenzanthracene
.
CHEBI:35299
.
mutation induced by 1,4-dimethanesulfonoxy-1,4-dimethylbutane exposure
origin_of_mutation
1,4-dimethanesulfonoxy-1:4-dimethylbutane
CB2348
dimethylmyleran
FBcv:0000563
1,4-dimethanesulfonoxy-1,4-dimethylbutane
.
CHEBI:67107
dimethylmyleran
CHEBI:67107
Mutation induced by exposure to 1,4-dimethanesulfonoxybut-2-yne.
mutation induced by 1,4-dimethanesulfonoxybut-2-yne exposure
origin_of_mutation
CB2058
FBcv:0000564
1,4-dimethanesulfonoxybut-2-yne
Mutation induced by exposure to 1,4-dimethanesulfonoxybut-2-yne.
FBC:MMC
Dominance relationships describe the dependence of the expression of a phenotypic attribute of an allele on the genotype at the locus in question. An allele might be recessive with respect to one phenotypic attribute, but dominant with respect to another.
dominance_qualifier
FBcv:0000565
dominance relationship qualifier
Dominance relationships describe the dependence of the expression of a phenotypic attribute of an allele on the genotype at the locus in question. An allele might be recessive with respect to one phenotypic attribute, but dominant with respect to another.
FBC:rd
Mutation induced by exposure to 1,6-dimethylsulfonoxy D-mannitol.
mutation induced by 1,6-dimethylsulfonoxy D-mannitol exposure
origin_of_mutation
CB2511
FBcv:0000566
1,6-dimethylsulfonoxy D-mannitol
Mutation induced by exposure to 1,6-dimethylsulfonoxy D-mannitol.
FBC:MMC
Mutation induced by exposure to 1,6-dimethylsulfonoxy L-mannitol.
mutation induced by 1,6-dimethylsulfonoxy L-mannitol exposure
origin_of_mutation
CB2628
FBcv:0000567
1,6-dimethylsulfonoxy L-mannitol
Mutation induced by exposure to 1,6-dimethylsulfonoxy L-mannitol.
FBC:MMC
.
mutation induced by 1-amino-2-naphthol-4-sulfonic acid exposure
origin_of_mutation
FBcv:0000568
1-amino-2-naphthol-4-sulfonic acid
.
CHEBI:19024
.
mutation induced by lucanthone exposure
origin_of_mutation
1-diethylaminoethylethylamino-4-methyl-thioxanthenone
1-{[2-(diethylamino)ethyl]amino}-4-methyl-9H-thioxanthen-9-one
lucanthone
FBcv:0000569
lucanthone
.
CHEBI:51052
1-{[2-(diethylamino)ethyl]amino}-4-methyl-9H-thioxanthen-9-one
CHEBI:51052
lucanthone
CHEBI:51052
.
mutation induced by 2-methoxyethanol exposure
origin_of_mutation
FBcv:0000570
2-methoxyethanol
.
CHEBI:46790
.
mutation induced by 2,5-bis(ethyleneimino)-1,4-benzoquinone exposure
origin_of_mutation
2,5,-bisethylene-imine-1,4-benzoquinone
FBcv:0000571
2,5-bis(ethyleneimino)-1,4-benzoquinone
.
CHEBI:19363
.
mutation induced by 7-bromomethyl-12-methylbenz[a]anthracene exposure
origin_of_mutation
7-bromomethyl 12 methyl benz&agr; anthracine
7-bromomethyl 12 methyl benzalpha anthracine
7-bromomethyl-12-methyltetraphene
FBcv:0000572
7-bromomethyl-12-methylbenz[a]anthracene
.
CHEBI:20787
7-bromomethyl-12-methyltetraphene
CHEBI:20787
.
mutation induced by actinomycin D exposure
origin_of_mutation
FBcv:0000573
actinomycin D
.
CHEBI:27666
.
mutation induced by benzo(alpha)pyrene exposure
origin_of_mutation
benzo(&agr;)pyrene
benzo[a]pyrene
FBcv:0000574
benzo(alpha)pyrene
.
CHEBI:29865
benzo[a]pyrene
CHEBI:29865
.
mutation induced by caffeine exposure
origin_of_mutation
FBcv:0000575
caffeine
.
CHEBI:27732
.
mutation induced by cisplatin exposure
origin_of_mutation
cis-dichlorodiammineplatinum(II)
FBcv:0000576
cisplatin
.
CHEBI:27899
.
mutation induced by colchicine exposure
origin_of_mutation
FBcv:0000577
colchicine
.
CHEBI:23359
.
mutation induced by dimethyl sulfoxide exposure
origin_of_mutation
FBcv:0000578
dimethyl sulfoxide
.
CHEBI:28262
.
mutation induced by DNA treatment
origin_of_mutation
FBcv:0000579
DNA
.
CHEBI:16991
.
mutation induced by ethyl ether exposure
origin_of_mutation
FBcv:0000580
ethyl ether
.
CHEBI:35702
.
mutation induced by ethylenimine exposure
origin_of_mutation
EI
FBcv:0000581
ethylenimine
.
CHEBI:30969
.
mutation induced by ethylene oxide exposure
origin_of_mutation
ethylene oxide
oxirane
FBcv:0000582
ethylene oxide
.
CHEBI:27561
ethylene oxide
CHEBI:27561
oxirane
CHEBI:27561
.
mutation induced by fagaronine exposure
origin_of_mutation
FBcv:0000583
fagaronine
.
CHEBI:28954
.
mutation induced by formaldehyde exposure
origin_of_mutation
FBcv:0000584
formaldehyde
.
CHEBI:16842
.
mutation induced by hesperidine exposure
origin_of_mutation
hesperidin
FBcv:0000585
hesperidine
.
CHEBI:28775
hesperidin
CHEBI:28775
.
mutation induced by HMM exposure
mutation induced by hexamethylmelamine exposure
origin_of_mutation
HMM
altretamine
FBcv:0000586
hexamethylmelamine
.
CHEBI:24564
.
mutation induced by HMPA exposure
mutation induced by hexamethylphosphoramide exposure
origin_of_mutation
HMPA
FBcv:0000587
hexamethylphosphoramide
.
CHEBI:24565
.
mutation induced by iodine exposure
origin_of_mutation
FBcv:0000588
iodine
.
CHEBI:24859
.
mutation induced by Janus green B exposure
origin_of_mutation
Janus green B chloride
FBcv:0000589
Janus green B
.
CHEBI:21184
Janus green B chloride
CHEBI:21184
.
mutation induced by methoxy diethylnitrosamine exposure
origin_of_mutation
1-methoxy-N-nitrosodiethylamine
FBcv:0000590
Mapped to CHEBI:25234 (1-methoxy-N-nitrosodiethylamine) based on synonym of nitrosodiethylamine being diethylnitrosamine and CHEBI:25234 being classified as a mutagen.
methoxy diethylnitrosamine
.
CHEBI:25234
1-methoxy-N-nitrosodiethylamine
CHEBI:25234
Mutation induced by exposure to natural gas.
mutation induced by natural gas exposure
origin_of_mutation
FBcv:0000591
natural gas
Mutation induced by exposure to natural gas.
FBC:MMC
.
mutation induced by MNU exposure
mutation induced by nitrosomethyl urea exposure
origin_of_mutation
MNU
N-methyl-N-nitrosourea
FBcv:0000592
nitrosomethyl urea
.
CHEBI:50102
N-methyl-N-nitrosourea
CHEBI:50102
.
mutation induced by DMN exposure
mutation induced by N-nitrosodimethylamine exposure
origin_of_mutation
DMN
FBcv:0000593
N-nitrosodimethylamine
.
CHEBI:35807
.
mutation induced by p-N,N-di(2-chloroethyl)aminophenylvaleric acid exposure
origin_of_mutation
CB1356
FBcv:0000594
p-N,N-di(2-chloroethyl)aminophenylvaleric acid
.
CHEBI:25813
.
mutation induced by p-N,N-di-(2-chloroethyl)amino-D-phenylalanine exposure
origin_of_mutation
CB3026
FBcv:0000595
p-N,N-di-(2-chloroethyl)amino-D-phenylalanine
.
CHEBI:25814
.
mutation induced by melphalan exposure
mutation induced by p-N,N-di-(2-chloroethyl)amino-DL-phenylalanine exposure
origin_of_mutation
CB3007
melphalan
FBcv:0000596
p-N,N-di-(2-chloroethyl)amino-DL-phenylalanine
.
CHEBI:28876
melphalan
CHEBI:28876
.
mutation induced by p-N,N-di-(2-chloroethyl)amino-L-phenylalanine exposure
origin_of_mutation
CB3025
FBcv:0000597
p-N,N-di-(2-chloroethyl)amino-L-phenylalanine
.
CHEBI:25816
FlyBase miscellaneous CV
FBcv:0000598
Consider - FBsv:0001009.
dominant temperature-sensitive lethal balancer
true
.
mutation induced by p-N,N-di-(2-chloroethyl)aminophenylethylamine exposure
origin_of_mutation
CB3034
FBcv:0000599
p-N,N-di-(2-chloroethyl)aminophenylethylamine
.
CHEBI:25818
.
mutation induced by p-p'-N,N-di(2-chloroethyl)aminophenoxyphenylalanine exposure
origin_of_mutation
CB305
FBcv:0000600
p-p'-N,N-di(2-chloroethyl)aminophenoxyphenylalanine
.
CHEBI:25829
.
mutation induced by quinhydrone exposure
origin_of_mutation
FBcv:0000601
quinhydrone
.
CHEBI:26491
.
mutation induced by S-2-chloroethylcysteine exposure
origin_of_mutation
CB1592
FBcv:0000602
S-2-chloroethylcysteine
.
CHEBI:22025
.
mutation induced by styryl quinoline exposure
origin_of_mutation
CB3086
FBcv:0000603
styryl quinoline
.
CHEBI:26800
.
mutation induced by triaziquone exposure
origin_of_mutation
FBcv:0000604
triaziquone
.
CHEBI:27090
.
mutation induced by triethylenemelamine exposure
origin_of_mutation
CB1246
TEM
tretamine
FBcv:0000605
triethylenemelamine
.
CHEBI:27919
tretamine
CHEBI:27919
Assay method used to generate an allele.
FBcv:0000807
mode_of_assay
FBcv:0000606
This term has been obsoleted because it is no longer used and relevant. mc151005
allele assay method
true
Assay method used to generate an allele.
FBC:MMC
FBcv:0000807
mode_of_assay
FBcv:0000607
This term has been obsoleted because it is no longer used and relevant. mc151005
In transgenic Drosophila
true
FBcv:0000807
mode_of_assay
FBcv:0000608
This term has been obsoleted because it is no longer used and relevant. mc151005
Whole-organism transient assay
true
FBcv:0000807
abbrev:3
mode_of_assay
FBcv:0000609
This term has been obsoleted because it is no longer used and relevant. mc151005
Drosophila cell culture
true
FBcv:0000807
abbrev:5
mode_of_assay
FBcv:0000610
This term has been obsoleted because it is no longer used and relevant. mc151005
In transgenic Drosophila (allele of one drosophilid species in genome of another drosophilid)
true
FBcv:0000807
abbrev:6
mode_of_assay
FBcv:0000611
This term has been obsoleted because it is no longer used and relevant. mc151005
Whole-organism transient assay (allele from one drosophilid species assayed in another drosophilid)
true
FBcv:0000807
abbrev:7
mode_of_assay
FBcv:0000612
This term has been obsoleted because it is no longer used and relevant. mc151005
In transgenic Drosophila (allele of foreign species in genome of drosophilid)
true
FBcv:0000807
abbrev:8
mode_of_assay
FBcv:0000613
This term has been obsoleted because it is no longer used and relevant. mc151005
Whole-organism transient assay (allele of foreign species assayed in drosophilid)
true
FlyBase miscellaneous CV
FBcv:0000614
Consider - FBsv:0000000.
stock descriptor
true
FlyBase miscellaneous CV
FBcv:0000615
extracted wild-type chromosome
true
FlyBase miscellaneous CV
FBcv:0000616
I don't think this is a useful term.
laboratory stock
true
FlyBase miscellaneous CV
FBcv:0000617
selected wild-type stock
true
FlyBase miscellaneous CV
FBcv:0000618
Consider - FBsv:0001005.
wild-type stock
true
FlyBase miscellaneous CV
FBcv:0000619
Consider - FBsv:0001002.
isogenic stock
true
Qualifier that describes the relation between two phenotypes that are due to genotypes g1 and g2.
genetic_interaction_type
FBcv:0000620
genetic interaction qualifier
Qualifier that describes the relation between two phenotypes that are due to genotypes g1 and g2.
FBC:MMC
The genotype g1 is a suppressor of genotype g2 if (and only if) the phenotype due to g2 is made less severe by g1.
genetic_interaction_type
FBcv:0000621
Not used directly in curation, but automatically inferred from its inverse (suppressible).
suppressor
The genotype g1 is a suppressor of genotype g2 if (and only if) the phenotype due to g2 is made less severe by g1.
FBC:DOS
FlyBase:FBrf0000957
ISBN:978-0-387-52054-4
A phenotype due to genotype g1 is suppressible by genotype g2 if the if the phenotype due to the genotype g1g2 is less severe than that due to g1 alone.
genetic_interaction_type
FBcv:0000622
suppressible
A phenotype due to genotype g1 is suppressible by genotype g2 if the if the phenotype due to the genotype g1g2 is less severe than that due to g1 alone.
FBC:DOS
FlyBase:FBrf0000957
ISBN:978-0-387-52054-4
Genotype g1 is enhancer of genotype g2 if (and only if) the phenotype due to the genotype g1g2 is more severe than the sum of phenotypes due to g1 and g2, where all comparisons are under identical environmental conditions.
genetic_interaction_type
FBcv:0000623
Not used directly in curation, but automatically inferred from its inverse (enhanceable).
enhancer
Genotype g1 is enhancer of genotype g2 if (and only if) the phenotype due to the genotype g1g2 is more severe than the sum of phenotypes due to g1 and g2, where all comparisons are under identical environmental conditions.
FBC:DOS
FlyBase:FBrf0000957
ISBN:978-0-387-52054-4
A phenotype due to genotype g1 is enhanceable by genotype g2 if (and only if) the phenotype due to the genotype g1g2 is more severe than the sum of phenotypes due to g1 and g2, where all comparisons are under identical environmental conditions.
genetic_interaction_type
FBcv:0000624
enhanceable
A phenotype due to genotype g1 is enhanceable by genotype g2 if (and only if) the phenotype due to the genotype g1g2 is more severe than the sum of phenotypes due to g1 and g2, where all comparisons are under identical environmental conditions.
FBC:DOS
FlyBase:FBrf0000957
ISBN:978-0-387-52054-4
Genotype g1 is a non-enhancer of genotype g2 if (and only if) the phenotype due to the genotype g1g2 is not more severe than the sum of phenotypes due to g1 and g2, where all comparisons are under identical environmental conditions.
genetic_interaction_type
FBcv:0000625
Not used directly in curation, but automatically inferred from its inverse (non-enhanceable).
non-enhancer
Genotype g1 is a non-enhancer of genotype g2 if (and only if) the phenotype due to the genotype g1g2 is not more severe than the sum of phenotypes due to g1 and g2, where all comparisons are under identical environmental conditions.
FBC:MMC
FlyBase:FBrf0000957
ISBN:978-0-387-52054-4
A phenotype due to genotype g1 is non-enhanceable by genotype g2 if (and only if) the phenotype due to the genotype g1g2 is no more severe than the sum of phenotypes due to g1 and g2, where all comparisons are under identical environmental conditions.
genetic_interaction_type
FBcv:0000626
non-enhanceable
A phenotype due to genotype g1 is non-enhanceable by genotype g2 if (and only if) the phenotype due to the genotype g1g2 is no more severe than the sum of phenotypes due to g1 and g2, where all comparisons are under identical environmental conditions.
FBC:DOS
FlyBase:FBrf0000957
ISBN:978-0-387-52054-4
The genotype g1 is a non-suppressor of genotype g2 if (and only if) the phenotype due to g2 is not made less severe by g1.
genetic_interaction_type
FBcv:0000627
Not used directly in curation, but automatically inferred from its inverse (non-suppressible).
non-suppressor
The genotype g1 is a non-suppressor of genotype g2 if (and only if) the phenotype due to g2 is not made less severe by g1.
FBC:MMC
FlyBase:FBrf0000957
ISBN:978-0-387-52054-4
A phenotype due to genotype g1 is non-suppressible by genotype g2 if (and only if) the phenotype due to the genotype g1g2 is no less severe than the phenotype due to g1 alone.
genetic_interaction_type
FBcv:0000628
non-suppressible
A phenotype due to genotype g1 is non-suppressible by genotype g2 if (and only if) the phenotype due to the genotype g1g2 is no less severe than the phenotype due to g1 alone.
FBC:DOS
FlyBase:FBrf0000957
ISBN:978-0-387-52054-4
FlyBase miscellaneous CV
FBcv:0000629
dominant temperature-sensitive lethal balancer for chromosome 2
true
FlyBase miscellaneous CV
FBcv:0000630
dominant temperature-sensitive lethal balancer for chromosome 3
true
FlyBase miscellaneous CV
FBcv:0000631
DrosDel Project deficiency core kit stock
true
FlyBase miscellaneous CV
FBcv:0000632
Consider - FBsv:0000601.
Bloomington Stock Center deficiency kit stock
true
FlyBase miscellaneous CV
FBcv:0000633
Exelixis deficiency kit stock
true
FlyBase miscellaneous CV
FBcv:0000634
duplication kit stock
true
FlyBase miscellaneous CV
FBcv:0000635
Consider - FBsv:0000603.
Cambridge 2 duplication kit stock
true
FlyBase miscellaneous CV
FBcv:0000636
Consider - FBsv:0000602.
Bloomington duplication kit stock
true
FlyBase miscellaneous CV
FBcv:0000637
Gene Disruption Project stock
true
FlyBase miscellaneous CV
FBcv:0000638
Consider - FBsv:0001003.
sequenced strain
true
FlyBase miscellaneous CV
FBcv:0000639
Consider - FBsv:0000604.
Golic gene replacement kit stock
true
FlyBase miscellaneous CV
FBcv:0000640
Golic laboratory gene replacement kit stock
true
FlyBase miscellaneous CV
FBcv:0000641
stock by cytotype
true
FlyBase miscellaneous CV
FBcv:0000642
H cytotype stock
true
FlyBase miscellaneous CV
FBcv:0000643
hobo family transposable element insertions present
true
FlyBase miscellaneous CV
FBcv:0000644
hobo family transposable element insertions absent
true
FlyBase miscellaneous CV
FBcv:0000645
P cytotype stock
true
FlyBase miscellaneous CV
FBcv:0000646
P-element family transposable element insertions absent
true
FlyBase miscellaneous CV
FBcv:0000647
P-element family transposable element insertions present
true
FlyBase miscellaneous CV
FBcv:0000648
mapping stock
true
FlyBase miscellaneous CV
FBcv:0000649
visible allele recombination mapping stock
true
Work consisting of a statement of the opinions, beliefs, and policy of the editor or publisher of a journal, usually on current matters of medical or scientific significance to the medical community or society at large.
MeSH:D016421
pub_type
FBcv:0000650
editorial
Work consisting of a statement of the opinions, beliefs, and policy of the editor or publisher of a journal, usually on current matters of medical or scientific significance to the medical community or society at large.
http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?view=expanded&field=uid&term=D016421
FBcv:0000199
pub_type
FBcv:0000651
This term was obsoleted to conform with the MeSH terms used by PubMed. Please use 'FBcv:0000199
meeting report
true
A publication containing a collection of separate articles written by distinct authors.
Parent publication
multipub
multipublication
pub_type
FBcv:0000652
compendium
A publication containing a collection of separate articles written by distinct authors.
FBC:SM
Parent publication
FBC:SM
multipub
FBC:SM
multipublication
FBC:SM
Restricted to unknown subtype(s) of a specified type.
expression_qualifier
FBcv:0000653
subset
Restricted to unknown subtype(s) of a specified type.
FBC:DS
Qualifier that describes the expression pattern of an embryo.
embryonic_pattern_qualifier
FBcv:0000654
embryonic pattern qualifier
Qualifier that describes the expression pattern of an embryo.
FBC:MMC
VDRC
Vienna
FlyBase miscellaneous CV
FBcv:0000655
Consider - FBsv:0000107.
Vienna Drosophila RNAi Center
true
FlyBase miscellaneous CV
FBcv:0000656
Consider - FBsv:0000008.
frozen specimen
true
FlyBase miscellaneous CV
FBcv:0000657
mutant stock
true
FlyBase miscellaneous CV
FBcv:0000658
DrosDel Project deficiency stock
true
FlyBase miscellaneous CV
FBcv:0000659
deficiency stock
true
FlyBase miscellaneous CV
FBcv:0000660
Consider - FBsv:0000501.
inbred line
true
FlyBase miscellaneous CV
FBcv:0000661
Consider - FBsv:0000502.
isofemale line
true
A stock established from flies collected in the wild within the past 3 years.
FlyBase miscellaneous CV
FBcv:0000662
Consider - FBsv:0000504.
recently collected stock
true
A stock established from flies collected in the wild within the past 3 years.
FBC:KM
FlyBase miscellaneous CV
FBcv:0000663
transposable element-containing stock
true
FlyBase miscellaneous CV
FBcv:0000664
duplication stock
true
Phenotype that is an abnormality in body size compared to wild-type animals raised under the same conditions as the animals exhibiting the phenotype.
phenotypic_class
FBcv:0000665
body size defective
Phenotype that is an abnormality in body size compared to wild-type animals raised under the same conditions as the animals exhibiting the phenotype.
FBC:DOS
FBcv:0000199
pub_type
FBcv:0000666
This term was obsoleted to conform with the MeSH terms used by PubMed. Please use 'FBcv:0000199
conference proceedings
true
A set of related web pages containing content such as text, images, video, audio, etc., prepared and maintained as a collection of information on a particular subject.
pub_type
FBcv:0000667
website
A set of related web pages containing content such as text, images, video, audio, etc., prepared and maintained as a collection of information on a particular subject.
FBC:SM
Phenotype that is a defect in cell adhesion (GO:0007155). 'cell adhesion' is defined as: '$sub_GO:0007155'
phenotypic_class
FBcv:0000668
fbcvsubset_mgiribbons
cell adhesion defective
Phenotype that is a defect in cell adhesion (GO:0007155). 'cell adhesion' is defined as: '$sub_GO:0007155'
FBC:DOS
Phenotype that is a defect in hatching behavior (GO:0035187). 'hatching behavior' is defined as: '$sub_GO:0035187'
hatching behaviour defective
phenotypic_class
FBcv:0000669
hatching behavior defective
Phenotype that is a defect in hatching behavior (GO:0035187). 'hatching behavior' is defined as: '$sub_GO:0035187'
FBC:DOS
Phenotype that is a defect in eclosion (GO:0007562). 'eclosion' is defined as: '$sub_GO:0007562'
phenotypic_class
FBcv:0000670
fbcvsubset_mgiribbons
eclosion defective
Phenotype that is a defect in eclosion (GO:0007562). 'eclosion' is defined as: '$sub_GO:0007562'
FBC:DOS
Phenotype that is a defect in cell cycle (GO:0007049). 'cell cycle' is defined as: '$sub_GO:0007049'
phenotypic_class
FBcv:0000671
fbcvsubset_mgiribbons
cell cycle defective
Phenotype that is a defect in cell cycle (GO:0007049). 'cell cycle' is defined as: '$sub_GO:0007049'
FBC:DOS
Phenotype that is a defect in endomitotic cell cycle (GO:0007113). 'endomitotic cell cycle' is defined as: '$sub_GO:0007113'
endocycle defective
phenotypic_class
FBcv:0000672
endomitotic cell cycle defective
Phenotype that is a defect in endomitotic cell cycle (GO:0007113). 'endomitotic cell cycle' is defined as: '$sub_GO:0007113'
FBC:DOS
FlyBase miscellaneous CV
FBcv:0000673
Consider - FBsv:0001003.
sequenced whole genome stock
true
FlyBase miscellaneous CV
FBcv:0000674
phiC31 based integration system
true
FlyBase miscellaneous CV
FBcv:0000675
phiC31 docking site stock
true
FlyBase miscellaneous CV
FBcv:0000676
Consider - FBsv:0000503.
multi-female collection
true
60-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
djs93
2009-05-28T03:54:39Z
spatial_qualifier
FBcv:0000677
60-70% egg length
60-70% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
80-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
djs93
2009-05-28T03:55:30Z
spatial_qualifier
FBcv:0000678
80-100% egg length
80-100% of egg length from the posterior tip (0%) of the egg or pre-gastrula embryo.
FBC:DOS
Phenotype that is a defect in circadian behavior (GO:0048512). 'circadian behavior' is defined as: '$sub_GO:0048512'
djs93
2009-11-30T11:06:35Z
phenotypic_class
FBcv:0000679
circadian behavior defective
Phenotype that is a defect in circadian behavior (GO:0048512). 'circadian behavior' is defined as: '$sub_GO:0048512'
FBC:DOS
Phenotype that is a defect in proboscis extension reflex (GO:0007637). 'proboscis extension reflex' is defined as: '$sub_GO:0007637'
phenotypic_class
FBcv:0000680
proboscis extension reflex defective
Phenotype that is a defect in proboscis extension reflex (GO:0007637). 'proboscis extension reflex' is defined as: '$sub_GO:0007637'
FBC:DOS
Phenotype that is a defect in sensory perception (GO:0007600). 'sensory perception' is defined as: '$sub_GO:0007600'
djs93
2010-02-23T12:28:26Z
phenotypic_class
FBcv:0000681
fbcvsubset_mgiribbons
sensory perception defective
Phenotype that is a defect in sensory perception (GO:0007600). 'sensory perception' is defined as: '$sub_GO:0007600'
FBC:DOS
Phenotype that is a defect in sensory perception of touch (GO:0050975). 'sensory perception of touch' is defined as: '$sub_GO:0050975'
phenotypic_class
touch perception defective
FBcv:0000682
touch perception defective
Phenotype that is a defect in sensory perception of touch (GO:0050975). 'sensory perception of touch' is defined as: '$sub_GO:0050975'
FBC:DOS
Phenotype that is a defect in response to temperature stimulus (GO:0009266). 'response to temperature stimulus' is defined as: '$sub_GO:0009266'
djs93
2010-02-23T12:51:02Z
phenotypic_class
FBcv:0000683
fbcvsubset_mgiribbons
temperature response defective
Phenotype that is a defect in response to temperature stimulus (GO:0009266). 'response to temperature stimulus' is defined as: '$sub_GO:0009266'
FBC:DOS
Phenotype that is a defect in response to cold (GO:0009409). 'response to cold' is defined as: '$sub_GO:0009409'
djs93
2010-02-23T02:11:27Z
phenotypic_class
FBcv:0000684
cold stress response defective
Phenotype that is a defect in response to cold (GO:0009409). 'response to cold' is defined as: '$sub_GO:0009409'
FBC:DOS
Parental effects describe the dependence of the expression of a phenotypic attribute of an allele on the parent from which that allele is inherited.
genotype_to_phenotype_relation
FBcv:0000685
parental effect
Parental effects describe the dependence of the expression of a phenotypic attribute of an allele on the parent from which that allele is inherited.
FBC:rd
Phenotype that is a defect in axis specification (GO:0009798). 'axis specification' is defined as: '$sub_GO:0009798'
phenotypic_class
FBcv:0000686
fbcvsubset_mgiribbons
This phenotypic class does not encompass planar polarity.
axis specification defective
Phenotype that is a defect in axis specification (GO:0009798). 'axis specification' is defined as: '$sub_GO:0009798'
FBC:DOS
Descriptor that relates to aspects of a balancer.
FlyBase miscellaneous CV
FBcv:0000687
balancer descriptor
Descriptor that relates to aspects of a balancer.
FBC:MMC
An allele that completely lacks function, coding either for a completely inactive gene product or none at all.
djs93
2010-09-06T03:57:21Z
allele_class
amorph
null
FBcv:0000688
amorphic allele
An allele that completely lacks function, coding either for a completely inactive gene product or none at all.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele shown by molecular evidence to completely lack function, producing either a completely inactive gene product or none at all.
djs93
2010-09-06T03:57:49Z
molecular null
allele_class
FBcv:0000689
amorphic allele - molecular evidence
An allele shown by molecular evidence to completely lack function, producing either a completely inactive gene product or none at all.
FlyBase:FBrf0049147
Allele that makes a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
djs93
2010-09-06T03:58:15Z
hypomorph
allele_class
FBcv:0000690
hypomorphic allele
Allele that makes a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele shown by molecular evidence to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
djs93
2010-09-06T03:59:31Z
allele_class
FBcv:0000691
hypomorphic allele - molecular evidence
An allele shown by molecular evidence to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
FlyBase:FBrf0049147
An allele shown by molecular evidence to produce a gene product with a novel function or expression pattern compared to wild-type.
djs93
2010-09-06T04:01:04Z
allele_class
FBcv:0000692
neomorphic allele - molecular evidence
An allele shown by molecular evidence to produce a gene product with a novel function or expression pattern compared to wild-type.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
Allele shown by molecular evidence to make either a functionally wild-type gene product at increased levels or a gene product with the same function as wild-type but with increased activity.
djs93
2010-09-06T04:01:04Z
allele_class
FBcv:0000693
hypermorphic allele - molecular evidence
Allele shown by molecular evidence to make either a functionally wild-type gene product at increased levels or a gene product with the same function as wild-type but with increased activity.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that has been shown by molecular evidence to make a gene product that is antagonistic to the function of the wild-type gene product.
djs93
2010-09-06T04:01:04Z
allele_class
dominant negative
FBcv:0000694
antimorphic allele - molecular evidence
An allele that has been shown by molecular evidence to make a gene product that is antagonistic to the function of the wild-type gene product.
FlyBase:FBrf0049147
An allele that makes a gene product that is antagonistic to the function of the wild-type gene product.
djs93
2010-09-06T04:02:05Z
allele_class
antimorph
FBcv:0000695
antimorphic allele
An allele that makes a gene product that is antagonistic to the function of the wild-type gene product.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that makes either increased amounts of a normal gene product or a gene product with normal function but increased activity compared to wild-type.
djs93
2010-09-06T04:02:45Z
allele_class
hypermorph
FBcv:0000696
hypermorphic allele
An allele that makes either increased amounts of a normal gene product or a gene product with normal function but increased activity compared to wild-type.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that makes a gene product with a novel function or expression pattern compared to wild-type.
djs93
2010-09-06T04:03:33Z
allele_class
neomorph
FBcv:0000697
neomorphic allele
An allele that makes a gene product with a novel function or expression pattern compared to wild-type.
FlyBase:FBrf0002371
FlyBase:FBrf0049147
A phenotype that is a disruption in the wild-type pattern of segments or parasegments of the embryo or larva.
phenotypic_class
FBcv:0000698
fbcvsubset_mgiribbons
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
embryonic/larval segmentation phenotype
A phenotype that is a disruption in the wild-type pattern of segments or parasegments of the embryo or larva.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype that is the complete or partial loss of alternate segments or parasegments.
phenotypic_class
FBcv:0000699
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
pair rule phenotype
Embryonic/larval segmentation phenotype that is the complete or partial loss of alternate segments or parasegments.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype that is the complete or partial loss of even segments.
phenotypic_class
FBcv:0000700
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
even pair-rule phenotype
Embryonic/larval segmentation phenotype that is the complete or partial loss of even segments.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype that is the complete or partial loss of odd segments.
phenotypic_class
FBcv:0000701
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
odd pair-rule phenotype
Embryonic/larval segmentation phenotype that is the complete or partial loss of odd segments.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype in which some fraction of each segment (along the anterior-posterior axis) is deleted and replaced by a mirror image duplication of the remaining part of the segment.
phenotypic_class
FBcv:0000702
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
segment polarity phenotype
Embryonic/larval segmentation phenotype in which some fraction of each segment (along the anterior-posterior axis) is deleted and replaced by a mirror image duplication of the remaining part of the segment.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype that is the complete loss of a contiguous stretch of 2 or more segments.
phenotypic_class
FBcv:0000703
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
gap phenotype
Embryonic/larval segmentation phenotype that is the complete loss of a contiguous stretch of 2 or more segments.
FlyBase:FBrf0035438
Phenotype expressed only in the presence or absence of some specific chemical whose presence or absence does not induce the same defect in wild-type animals.
djs93
2010-09-20T11:13:19Z
environmental_qualifier
FBcv:0000704
chemical conditional
Phenotype expressed only in the presence or absence of some specific chemical whose presence or absence does not induce the same defect in wild-type animals.
FBC:DOS
Phenotype that is a defect in sleep (GO:0030431). 'sleep' is defined as: '$sub_GO:0030431'
djs93
2010-09-20T12:06:13Z
phenotypic_class
FBcv:0000705
fbcvsubset_mgiribbons
sleep defective
Phenotype that is a defect in sleep (GO:0030431). 'sleep' is defined as: '$sub_GO:0030431'
FBC:DOS
Phenotype that is a defect in entry into diapause (GO:0055115). 'entry into diapause' is defined as: '$sub_GO:0055115'
djs93
2010-09-20T12:06:28Z
phenotypic_class
FBcv:0000706
diapause defective
Phenotype that is a defect in entry into diapause (GO:0055115). 'entry into diapause' is defined as: '$sub_GO:0055115'
FBC:DOS
Phenotype that is a defect in entry into reproductive diapause (GO:0055116). 'entry into reproductive diapause' is defined as: '$sub_GO:0055116'
djs93
2010-09-20T12:21:29Z
phenotypic_class
FBcv:0000707
reproductive diapause defective
Phenotype that is a defect in entry into reproductive diapause (GO:0055116). 'entry into reproductive diapause' is defined as: '$sub_GO:0055116'
FBC:DOS
Phenotype that is a defect in response to starvation (GO:0042594). 'response to starvation' is defined as: '$sub_GO:0042594'
phenotypic_class
FBcv:0000708
starvation stress response defective
Phenotype that is a defect in response to starvation (GO:0042594). 'response to starvation' is defined as: '$sub_GO:0042594'
FBC:DOS
Phenotype that is an increase or decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by defects in cell growth - there may be a greater or lesser number of cells in an otherwise normal volume of tissue.
phenotypic_class
FBcv:0000709
fbcvsubset_mgiribbons
cell number defective
Phenotype that is an increase or decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by defects in cell growth - there may be a greater or lesser number of cells in an otherwise normal volume of tissue.
FBC:DOS
Change of a genomic sequence via homologous recombinational repair (GO:0000724) that is induced by a double stranded break in an engineered donor construct that contains sequence homologous to the target gene.
change induced by gene targeting via homologous recombination
origin_of_mutation
FBcv:0000710
Strictly, homologous recombinational repair (GO:0000724) defines only the endogenous process, not its use for engineered gene targeting.
gene targeting by homologous recombination
Change of a genomic sequence via homologous recombinational repair (GO:0000724) that is induced by a double stranded break in an engineered donor construct that contains sequence homologous to the target gene.
FBC:MC
FlyBase:FBrf0202435
Change of a genomic sequence via homologous recombinational repair (GO:0000724) that is induced by a double strand break on both sides of the homologous region in an engineered donor sequence. This double-strand break is usually generated by cutting at a single site adjacent to the homologous region in a circularized donor sequence. This typically generates a simple targeted replacement of the target sequence by the donor sequence. However, more complicated outcomes are possible.
change induced by ends-out gene targeting
origin_of_mutation
FBcv:0000711
ends-out gene targeting
Change of a genomic sequence via homologous recombinational repair (GO:0000724) that is induced by a double strand break on both sides of the homologous region in an engineered donor sequence. This double-strand break is usually generated by cutting at a single site adjacent to the homologous region in a circularized donor sequence. This typically generates a simple targeted replacement of the target sequence by the donor sequence. However, more complicated outcomes are possible.
FBC:MC
FlyBase:FBrf0167363
FlyBase:FBrf0202435
Change of a genomic sequence via homologous recombinational repair (GO:0000724) that is induced by a double strand break within an engineered homologous donor sequence. This typically generates a tandem duplication of the homologous sequence from the donor, separated by the remainder of the incoming donor DNA. However, more complicated outcomes are possible.
change induced by ends-in gene targeting
origin_of_mutation
FBcv:0000712
ends-in gene targeting
Change of a genomic sequence via homologous recombinational repair (GO:0000724) that is induced by a double strand break within an engineered homologous donor sequence. This typically generates a tandem duplication of the homologous sequence from the donor, separated by the remainder of the incoming donor DNA. However, more complicated outcomes are possible.
FBC:MC
FlyBase:FBrf0167363
FlyBase:FBrf0202435
Phenotype that is a inability to jump. This may be due to neurological or muscular defects.
djs93
2011-03-10T04:57:06Z
phenotypic_class
FBcv:0000713
jumpless
Phenotype that is a inability to jump. This may be due to neurological or muscular defects.
FBC:DOS
Phenotype only expressed under some specific nutritional regime.
djs93
2011-01-14T12:34:01Z
environmental_qualifier
FBcv:0000714
nutrition conditional
Phenotype only expressed under some specific nutritional regime.
FBC:DOS
Phenotype only expressed under conditions where calorie intake is restricted.
djs93
2011-01-14T05:12:37Z
environmental_qualifier
FBcv:0000715
calorie restriction conditional
Phenotype only expressed under conditions where calorie intake is restricted.
FBC:DOS
Phenotype that is a defect in cell migration (GO:0016477). 'cell migration' is defined as: '$sub_GO:0016477'
phenotypic_class
FBcv:0000716
fbcvsubset_mgiribbons
cell migration defective
Phenotype that is a defect in cell migration (GO:0016477). 'cell migration' is defined as: '$sub_GO:0016477'
FBC:DOS
Phenotype that is an increase in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
phenotypic_class
FBcv:0000717
increased cell growth
Phenotype that is an increase in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is an decrease in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
phenotypic_class
FBcv:0000718
decreased cell growth
Phenotype that is an decrease in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is a decrease in size of an initially normally sized organ or tissue due to wasting away of cells.
djs93
2011-03-10T05:59:04Z
phenotypic_class
FBcv:0000719
atrophy
Phenotype that is a decrease in size of an initially normally sized organ or tissue due to wasting away of cells.
FBC:DOS
Phenotype that is a defect or in or absence of a jump response (GO:0007630). The jump response in Drosophila is a reflex escape response that can be triggered by a number of signals including odor and light. Standard assays are commonly used to test odor and light induced jump response.
djs93
2011-03-11T08:03:28Z
phenotypic_class
FBcv:0000720
jump response defective
Phenotype that is a defect or in or absence of a jump response (GO:0007630). The jump response in Drosophila is a reflex escape response that can be triggered by a number of signals including odor and light. Standard assays are commonly used to test odor and light induced jump response.
FlyBase:FBrf0187887
FlyBase:FBrf0191819
Phenotype that is a defect in mating behavior (GO:0007617). 'mating behavior' is defined as: '$sub_GO:0007617'
phenotypic_class
FBcv:0000721
mating behavior defective
Phenotype that is a defect in mating behavior (GO:0007617). 'mating behavior' is defined as: '$sub_GO:0007617'
FBC:DOS
A clone of somatic cells that share a mutant genotype that includes being Minute +/+ and that is part of and derived from an animal with a different genotype that includes being Minute +/-.
djs93
2011-01-27T04:55:28Z
clone_qualifier
FBcv:0000722
somatic clone - Minute background
A clone of somatic cells that share a mutant genotype that includes being Minute +/+ and that is part of and derived from an animal with a different genotype that includes being Minute +/-.
FBC:DOS
Phenotype that consists of abnormal growth of a tissue or organ due to increased numbers of cells, but in which the affected tissue or organ does not maintain its normal form.
phenotypic_class
FBcv:0000723
neoplasia
Phenotype that consists of abnormal growth of a tissue or organ due to increased numbers of cells, but in which the affected tissue or organ does not maintain its normal form.
FBC:DOS
Phenotype that is a reduction in size of an organ or tissue compared to wild-type due to reduced numbers of cells being produced during its development or growth.
phenotypic_class
FBcv:0000724
This term should not be used where an organ or tissue is reduced in size due to the wasting away of existing cells.
hypoplasia
Phenotype that is a reduction in size of an organ or tissue compared to wild-type due to reduced numbers of cells being produced during its development or growth.
FBC:DOS
Phenotype that is a defect in response to oxidative stress (GO:0006979). 'response to oxidative stress' is defined as: '$sub_GO:0006979'
phenotypic_class
FBcv:0000725
oxidative stress response defective
Phenotype that is a defect in response to oxidative stress (GO:0006979). 'response to oxidative stress' is defined as: '$sub_GO:0006979'
FBC:DOS
Expressed in virgin females.
djs93
2011-04-21T01:10:32Z
sex_qualifier
FBcv:0000726
May be used as a qualifier for gene or transgene expression or phenotype. Note - its use does not imply expression (of gene or phenotype) exclusively in virgin females.
virgin female
Expressed in virgin females.
FBC:DOS
Expressed in mated females.
djs93
2011-04-21T01:10:49Z
sex_qualifier
FBcv:0000727
May be used as a qualifier for gene or transgene expression or phenotype. Note - its use does not imply expression (of gene or phenotype) exclusively in mated females.
mated female
Expressed in mated females.
FBC:DOS
Expressed in virgin males.
djs93
2011-04-21T01:11:13Z
sex_qualifier
FBcv:0000728
May be used as a qualifier for gene or transgene expression or phenotype. Note - its use does not imply expression (of gene or phenotype) exclusively in virgin males.
virgin male
Expressed in virgin males.
FBC:DOS
Expressed in mated males.
djs93
2011-04-21T01:11:21Z
sex_qualifier
FBcv:0000729
May be used as a qualifier for gene or transgene expression or phenotype. Note - its use does not imply expression (of gene or phenotype) exclusively in mated females.
mated male
Expressed in mated males.
FBC:DOS
Expression is limited to virgin females.
djs93
2011-04-21T01:11:46Z
sex_qualifier
FBcv:0000730
May be used to qualify expression of phenotypes or of genes, transgenes etc.
virgin female limited
Expression is limited to virgin females.
FBC:DOS
Expression is limited to mated females.
djs93
2011-04-21T01:11:59Z
sex_qualifier
FBcv:0000731
May be used to qualify expression of phenotypes or of genes, transgenes etc.
mated female limited
Expression is limited to mated females.
FBC:DOS
Expression is limited to mated males.
djs93
2011-04-21T01:12:14Z
sex_qualifier
FBcv:0000732
May be used to qualify expression of phenotypes or of genes, transgenes etc.
mated male limited
Expression is limited to mated males.
FBC:DOS
Expression is limited to virgin males.
djs93
2011-04-21T01:13:00Z
sex_qualifier
FBcv:0000733
May be used to qualify expression of phenotypes or of genes, transgenes etc.
virgin male limited
Expression is limited to virgin males.
FBC:DOS
Embryonic/larval segmentation phenotype that is the complete or partial loss of terminal regions of the embryo/larva: the acron, telson and immediately adjacent segments.
djs93
2011-09-13T02:31:53Z
phenotypic_class
FBcv:0000734
terminal phenotype
Embryonic/larval segmentation phenotype that is the complete or partial loss of terminal regions of the embryo/larva: the acron, telson and immediately adjacent segments.
FBC:DOS
.
mutation induced by N-nitrosodiethylamine exposure
origin_of_mutation
NDEA
FBcv:0000735
N-nitrosodiethylamine
.
CHEBI:34873
NDEA
FlyBase:FBrf0139766
An allele that completely lacks function (i.e. whose gene productive is completely inactive) at high temperatures, but that retains at least some function at lower temperatures.
djs93
2012-03-22T03:54:34Z
allele_class
FBcv:0000736
heat sensitive amorphic allele
An allele that completely lacks function (i.e. whose gene productive is completely inactive) at high temperatures, but that retains at least some function at lower temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred to completely lack function at some temperatures (restrictive temperatures) but not others (permissive temperatures) from the observation that addition of extra copies in the genome has no effect on the phenotype at the restrictive temperatures. Most commonly, evidence takes the form of the observation that the phenotype of homozygotes (2 copies) is identical to that seen when the allele is in trans to a deletion of the gene (1 copy).
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000737
temperature conditional amorphic allele - genetic evidence
An allele inferred to completely lack function at some temperatures (restrictive temperatures) but not others (permissive temperatures) from the observation that addition of extra copies in the genome has no effect on the phenotype at the restrictive temperatures. Most commonly, evidence takes the form of the observation that the phenotype of homozygotes (2 copies) is identical to that seen when the allele is in trans to a deletion of the gene (1 copy).
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
A publication that is not issued on a regular, ongoing basis containing separate articles or chapters (typically reviews) written by different authors on a single subject or related subjects, overseen by one or more editors.
djs93
2012-07-10T04:05:08Z
pub_type
FBcv:0000738
edited book
A publication that is not issued on a regular, ongoing basis containing separate articles or chapters (typically reviews) written by different authors on a single subject or related subjects, overseen by one or more editors.
FBC:SM
An allele that completely lacks function (i.e. whose gene productive is completely inactive) at some temperatures, but not others.
djs93
2012-03-22T03:57:02Z
allele_class
FBcv:0000739
temperature conditional amorphic allele
An allele that completely lacks function (i.e. whose gene productive is completely inactive) at some temperatures, but not others.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred to completely lack function at low temperatures (restrictive temperatures) but not at high temperatures (permissive temperatures) from the observation that adding extra copies in the genome has no effect on the phenotype at the restrictive temperatures. Most commonly, evidence takes the form of the observation that the phenotype of homozygotes (2 copies) is identical to that seen when the allele is in trans to a deletion of the gene (1 copy).
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000740
cold sensitive amorphic allele - genetic evidence
An allele inferred to completely lack function at low temperatures (restrictive temperatures) but not at high temperatures (permissive temperatures) from the observation that adding extra copies in the genome has no effect on the phenotype at the restrictive temperatures. Most commonly, evidence takes the form of the observation that the phenotype of homozygotes (2 copies) is identical to that seen when the allele is in trans to a deletion of the gene (1 copy).
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred to completely lack function at high temperatures (restrictive temperatures) but not at low temperatures (permissive temperatures) from the observation that adding extra copies in the genome has no effect on the phenotype at the restrictive temperatures. Most commonly, evidence takes the form of the observation that the phenotype of homozygotes (2 copies) is identical to that seen when the allele is in trans to a deletion of the gene (1 copy).
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000741
heat sensitive amorphic allele - genetic evidence
An allele inferred to completely lack function at high temperatures (restrictive temperatures) but not at low temperatures (permissive temperatures) from the observation that adding extra copies in the genome has no effect on the phenotype at the restrictive temperatures. Most commonly, evidence takes the form of the observation that the phenotype of homozygotes (2 copies) is identical to that seen when the allele is in trans to a deletion of the gene (1 copy).
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele shown by molecular evidence to completely lack function at low temperatures (restrictive temperatures) but not at high temperatures (permissive temperatures).
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000742
cold sensitive amorphic allele - molecular evidence
An allele shown by molecular evidence to completely lack function at low temperatures (restrictive temperatures) but not at high temperatures (permissive temperatures).
FBC:DOS
FlyBase:FBrf0049147
An allele shown by molecular evidence to completely lack function at high temperatures (restrictive temperatures) but not at low temperatures (permissive temperatures).
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000743
heat sensitive amorphic allele - molecular evidence
An allele shown by molecular evidence to completely lack function at high temperatures (restrictive temperatures) but not at low temperatures (permissive temperatures).
FBC:DOS
FlyBase:FBrf0049147
An allele shown by molecular evidence to completely lack function at some temperatures (restrictive temperatures) but not at others (permissive temperatures).
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000744
temperature conditional amorphic allele - molecular evidence
An allele shown by molecular evidence to completely lack function at some temperatures (restrictive temperatures) but not at others (permissive temperatures).
FBC:DOS
FlyBase:FBrf0049147
An allele that at some temperatures but not others either makes no functional gene product or makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type.
djs93
2012-03-22T03:57:02Z
allele_class
FBcv:0000745
temperature conditional loss of function allele
An allele that at some temperatures but not others either makes no functional gene product or makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type.
FBC:DOS
FlyBase:FBrf0049147
An allele that at high temperatures but not low temperatures, either makes no functional gene product, makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type.
djs93
2012-03-22T03:54:34Z
allele_class
FBcv:0000746
heat sensitive loss of function allele
An allele that at high temperatures but not low temperatures, either makes no functional gene product, makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type.
FBC:DOS
FlyBase:FBrf0049147
An allele that at low temperatures but not high temperatures, either makes no functional gene product, makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type.
allele_class
FBcv:0000747
cold sensitive loss of function allele
An allele that at low temperatures but not high temperatures, either makes no functional gene product, makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type.
FBC:DOS
FlyBase:FBrf0049147
An allele that at some temperatures but not others, either makes a normally functioning gene product but at higher levels or in a different spatial or temporal pattern to wild-type, or a product with increased or novel activity compared to wild-type.
djs93
2012-03-22T03:57:02Z
allele_class
FBcv:0000748
temperature conditional gain of function allele
An allele that at some temperatures but not others, either makes a normally functioning gene product but at higher levels or in a different spatial or temporal pattern to wild-type, or a product with increased or novel activity compared to wild-type.
FBC:DOS
FlyBase:FBrf0049147
An allele that at high temperatures but not low temperatures, either makes a normally functioning gene product but at higher levels or in a different spatial or temporal pattern to wild-type, or a product with increased or novel activity compared to wild-type.
djs93
2012-03-22T03:54:34Z
allele_class
FBcv:0000749
heat sensitive gain of function allele
An allele that at high temperatures but not low temperatures, either makes a normally functioning gene product but at higher levels or in a different spatial or temporal pattern to wild-type, or a product with increased or novel activity compared to wild-type.
FBC:DOS
FlyBase:FBrf0049147
An allele that at low temperatures but not high temperatures, either makes a normally functioning gene product but at higher levels or in a different spatial or temporal pattern to wild-type, or a product with increased or novel activity compared to wild-type.
allele_class
FBcv:0000750
cold sensitive gain of function allele
An allele that at low temperatures but not high temperatures, either makes a normally functioning gene product but at higher levels or in a different spatial or temporal pattern to wild-type, or a product with increased or novel activity compared to wild-type.
FBC:DOS
FlyBase:FBrf0049147
An allele that, at some temperatures but not others, makes a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
djs93
2012-03-22T03:57:02Z
allele_class
FBcv:0000751
temperature conditional hypomorphic allele
An allele that, at some temperatures but not others, makes a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that makes a gene product that is functionally equivalent to wild-type but which at high temperatures is present in a lesser amount or with lowered activity, and that retains normal levels of expression or activity at low temperatures.
djs93
2012-03-22T03:54:34Z
allele_class
FBcv:0000752
heat sensitive hypomorphic allele
An allele that makes a gene product that is functionally equivalent to wild-type but which at high temperatures is present in a lesser amount or with lowered activity, and that retains normal levels of expression or activity at low temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that makes a gene product that is functionally equivalent to wild-type but which at low temperatures is present in a lesser amount or with lowered activity, and that retains normal function at higher temperatures.
allele_class
FBcv:0000753
cold sensitive hypomorphic allele
An allele that makes a gene product that is functionally equivalent to wild-type but which at low temperatures is present in a lesser amount or with lowered activity, and that retains normal function at higher temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred from genetic evidence to have normal activity at some temperatures (permissive temperatures) but at other temperatures to make a gene product with normal function but in a lesser amount or with lowered activity (non-permissive temperatures). The genetic evidence must consist of an observation extra copies in the genome decrease the expressivity and/or penetrance of the phenotype at non-permissive temperatures. Most commonly this evidence takes the form of experiments showing that the homozygote (2 copies) has a weaker phenotype at non-permissive temperatures than the allele in trans to a deletion of the gene (1 copy)).
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000754
temperature conditional hypomorphic allele - genetic evidence
An allele inferred from genetic evidence to have normal activity at some temperatures (permissive temperatures) but at other temperatures to make a gene product with normal function but in a lesser amount or with lowered activity (non-permissive temperatures). The genetic evidence must consist of an observation extra copies in the genome decrease the expressivity and/or penetrance of the phenotype at non-permissive temperatures. Most commonly this evidence takes the form of experiments showing that the homozygote (2 copies) has a weaker phenotype at non-permissive temperatures than the allele in trans to a deletion of the gene (1 copy)).
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred from genetic evidence to have normal activity at high temperatures (permissive temperatures) but to make a gene product with normal function but in a lesser amount or with lowered activity at lower temperatures (non-permissive temperatures). The genetic evidence must consist of an observation extra copies in the genome decrease the expressivity and/or penetrance of the phenotype at non-permissive temperatures. Most commonly this evidence takes the form of experiments showing that the homozygote (2 copies) has a weaker phenotype at non-permissive temperatures than the allele in trans to a deletion of the gene (1 copy)).
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000755
cold sensitive hypomorphic allele - genetic evidence
An allele inferred from genetic evidence to have normal activity at high temperatures (permissive temperatures) but to make a gene product with normal function but in a lesser amount or with lowered activity at lower temperatures (non-permissive temperatures). The genetic evidence must consist of an observation extra copies in the genome decrease the expressivity and/or penetrance of the phenotype at non-permissive temperatures. Most commonly this evidence takes the form of experiments showing that the homozygote (2 copies) has a weaker phenotype at non-permissive temperatures than the allele in trans to a deletion of the gene (1 copy)).
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred from genetic evidence to have normal activity at low temperatures (permissive temperatures) but to make a gene product with normal function but in a lesser amount or with lowered activity at higher temperatures (non-permissive temperatures). The genetic evidence must consist of an observation extra copies in the genome decrease the expressivity and/or penetrance of the phenotype at non-permissive temperatures. Most commonly this evidence takes the form of experiments showing that the homozygote (2 copies) has a weaker phenotype at non-permissive temperatures than the allele in trans to a deletion of the gene (1 copy)).
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000756
heat sensitive hypomorphic allele - genetic evidence
An allele inferred from genetic evidence to have normal activity at low temperatures (permissive temperatures) but to make a gene product with normal function but in a lesser amount or with lowered activity at higher temperatures (non-permissive temperatures). The genetic evidence must consist of an observation extra copies in the genome decrease the expressivity and/or penetrance of the phenotype at non-permissive temperatures. Most commonly this evidence takes the form of experiments showing that the homozygote (2 copies) has a weaker phenotype at non-permissive temperatures than the allele in trans to a deletion of the gene (1 copy)).
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele shown by molecular evidence to make a normal gene product in normal amounts at some temperatures, but at other temperatures to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000757
temperature conditional hypomorphic allele - molecular evidence
An allele shown by molecular evidence to make a normal gene product in normal amounts at some temperatures, but at other temperatures to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
FBC:DOS
FlyBase:FBrf0049147
An allele shown by molecular evidence to make a normal gene product in normal amounts at high temperatures, but at lower temperatures to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000758
cold sensitive hypomorphic allele - molecular evidence
An allele shown by molecular evidence to make a normal gene product in normal amounts at high temperatures, but at lower temperatures to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
FBC:DOS
FlyBase:FBrf0049147
An allele shown by molecular evidence to make a normal gene product in normal amounts at low temperatures, but at higher temperatures to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000759
heat sensitive hypomorphic allele - molecular evidence
An allele shown by molecular evidence to make a normal gene product in normal amounts at low temperatures, but at higher temperatures to make a gene product that is functionally equivalent to wild-type but in a lesser amount or with lowered activity.
FBC:DOS
FlyBase:FBrf0049147
An allele that makes a gene product that is antagonistic to the function of the wild-type gene product at some temperatures, but not others.
djs93
2012-03-22T03:57:02Z
allele_class
FBcv:0000760
temperature conditional antimorphic allele
An allele that makes a gene product that is antagonistic to the function of the wild-type gene product at some temperatures, but not others.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that makes a gene product that is antagonistic to the function of the wild-type gene product at high temperatures, but not at lower temperatures.
djs93
2012-03-22T03:54:34Z
allele_class
FBcv:0000761
heat sensitive antimorphic allele
An allele that makes a gene product that is antagonistic to the function of the wild-type gene product at high temperatures, but not at lower temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that makes a gene product that is antagonistic to the function of the wild-type gene product at cold temperatures, but not at higher temperatures.
allele_class
FBcv:0000762
cold sensitive antimorphic allele
An allele that makes a gene product that is antagonistic to the function of the wild-type gene product at cold temperatures, but not at higher temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred to make a gene product that is antagonistic to the wild-type gene product at some temperatures (restrictive temperatures) but not at others (permissive temperatures) from the observation that, at the non-permissive temperatures, the phenotype over a deficiency is stronger than that over a wild-type allele, which in turn is stronger than that in the presence of a duplication of the wild-type locus.
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000763
temperature conditional antimorphic allele - genetic evidence
An allele inferred to make a gene product that is antagonistic to the wild-type gene product at some temperatures (restrictive temperatures) but not at others (permissive temperatures) from the observation that, at the non-permissive temperatures, the phenotype over a deficiency is stronger than that over a wild-type allele, which in turn is stronger than that in the presence of a duplication of the wild-type locus.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred to make a gene product that is antagonistic to the wild-type gene product at low temperatures (restrictive temperatures) but not at high temperatures (permissive temperatures) from the observation that, at the non-permissive temperatures, the phenotype over a deficiency is stronger than that over a wild-type allele, which in turn is stronger than that in the presence of a duplication of the wild-type locus.
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000764
cold sensitive antimorphic allele - genetic evidence
An allele inferred to make a gene product that is antagonistic to the wild-type gene product at low temperatures (restrictive temperatures) but not at high temperatures (permissive temperatures) from the observation that, at the non-permissive temperatures, the phenotype over a deficiency is stronger than that over a wild-type allele, which in turn is stronger than that in the presence of a duplication of the wild-type locus.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred to make a gene product that is antagonistic to the wild-type gene product at high temperatures (restrictive temperatures) but not at lower temperatures (permissive temperatures) from the observation that, at the non-permissive temperatures, the phenotype over a deficiency is stronger than that over a wild-type allele, which in turn is stronger than that in the presence of a duplication of the wild-type locus.
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000765
heat sensitive antimorphic allele - genetic evidence
An allele inferred to make a gene product that is antagonistic to the wild-type gene product at high temperatures (restrictive temperatures) but not at lower temperatures (permissive temperatures) from the observation that, at the non-permissive temperatures, the phenotype over a deficiency is stronger than that over a wild-type allele, which in turn is stronger than that in the presence of a duplication of the wild-type locus.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that has been shown by molecular evidence to make a gene product that is antagonistic to the function of the wild-type gene product at some temperatures but not others.
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000766
temperature conditional antimorphic allele - molecular evidence
An allele that has been shown by molecular evidence to make a gene product that is antagonistic to the function of the wild-type gene product at some temperatures but not others.
FBC:DOS
FlyBase:FBrf0049147
An allele that has been shown by molecular evidence to make a gene product that is antagonistic to the function of the wild-type gene product at low temperatures but not higher temperatures.
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000767
cold sensitive antimorphic allele - molecular evidence
An allele that has been shown by molecular evidence to make a gene product that is antagonistic to the function of the wild-type gene product at low temperatures but not higher temperatures.
FBC:DOS
FlyBase:FBrf0049147
An allele that has been shown by molecular evidence to make a gene product that is antagonistic to the function of the wild-type gene product at high temperatures but not lower temperatures.
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000768
heat sensitive antimorphic allele - molecular evidence
An allele that has been shown by molecular evidence to make a gene product that is antagonistic to the function of the wild-type gene product at high temperatures but not lower temperatures.
FBC:DOS
FlyBase:FBrf0049147
An allele that, at some temperatures but not others, makes a gene product with a novel function or expression pattern compared to wild-type.
djs93
2012-03-22T03:57:02Z
allele_class
FBcv:0000769
temperature conditional neomorphic allele
An allele that, at some temperatures but not others, makes a gene product with a novel function or expression pattern compared to wild-type.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that, at some high temperatures but not lower temperatures, makes a gene product with a novel function or expression pattern compared to wild-type.
djs93
2012-03-22T03:54:34Z
allele_class
FBcv:0000770
heat sensitive neomorphic allele
An allele that, at some high temperatures but not lower temperatures, makes a gene product with a novel function or expression pattern compared to wild-type.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that, at some low temperatures but not higher temperatures, makes a gene product at with a novel function or expression pattern compared to wild-type.
allele_class
FBcv:0000771
cold sensitive neomorphic allele
An allele that, at some low temperatures but not higher temperatures, makes a gene product at with a novel function or expression pattern compared to wild-type.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that, is inferred to make a gene product with a novel function or expression pattern compared to wild-type at some temperatures (non-permissive temperatures) but not others (permissive temperatures) based on the evidence that the phenotype at the non-permissive temperature is unaffected by extra or fewer doses of the wild-type gene.
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000772
temperature conditional neomorphic allele - genetic evidence
An allele that, is inferred to make a gene product with a novel function or expression pattern compared to wild-type at some temperatures (non-permissive temperatures) but not others (permissive temperatures) based on the evidence that the phenotype at the non-permissive temperature is unaffected by extra or fewer doses of the wild-type gene.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that, is inferred to make a gene product with a novel function or expression pattern compared to wild-type at some low temperatures (non-permissive temperatures) but not higher temperatures (permissive temperatures), based on the evidence that the phenotype at the non-permissive temperature is unaffected by extra or fewer doses of the wild-type gene.
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000773
cold sensitive neomorphic allele - genetic evidence
An allele that, is inferred to make a gene product with a novel function or expression pattern compared to wild-type at some low temperatures (non-permissive temperatures) but not higher temperatures (permissive temperatures), based on the evidence that the phenotype at the non-permissive temperature is unaffected by extra or fewer doses of the wild-type gene.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that, is inferred to make a gene product with a novel function or expression pattern compared to wild-type at some high temperatures (non-permissive temperatures) but not lower temperatures (permissive temperatures), based on the evidence that the phenotype at the non-permissive temperature is unaffected by extra or fewer doses of the wild-type gene.
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000774
heat sensitive neomorphic allele - genetic evidence
An allele that, is inferred to make a gene product with a novel function or expression pattern compared to wild-type at some high temperatures (non-permissive temperatures) but not lower temperatures (permissive temperatures), based on the evidence that the phenotype at the non-permissive temperature is unaffected by extra or fewer doses of the wild-type gene.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele shown by molecular evidence to produce a gene product with a novel function or expression pattern (compared to wild-type) at some temperatures but not others.
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000775
temperature conditional neomorphic allele - molecular evidence
An allele shown by molecular evidence to produce a gene product with a novel function or expression pattern (compared to wild-type) at some temperatures but not others.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele shown by molecular evidence to produce a gene product with a novel function or expression pattern (compared to wild-type) at low temperatures but not higher temperatures.
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000776
cold sensitive neomorphic allele - molecular evidence
An allele shown by molecular evidence to produce a gene product with a novel function or expression pattern (compared to wild-type) at low temperatures but not higher temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele shown by molecular evidence to produce a gene product with a novel function or expression pattern (compared to wild-type) at high temperatures but not lower temperatures.
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000777
heat sensitive neomorphic allele - molecular evidence
An allele shown by molecular evidence to produce a gene product with a novel function or expression pattern (compared to wild-type) at high temperatures but not lower temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that, at some temperatures but not others, makes a gene product with normal function but at higher levels or with higher activity than in wild-type.
djs93
2012-03-22T03:57:02Z
allele_class
FBcv:0000778
temperature conditional hypermorphic allele
An allele that, at some temperatures but not others, makes a gene product with normal function but at higher levels or with higher activity than in wild-type.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that, at high temperatures but not lower temperatures, makes a gene product with normal function but at higher levels or with higher activity than in wild-type.
djs93
2012-03-22T03:54:34Z
allele_class
FBcv:0000779
heat sensitive hypermorphic allele
An allele that, at high temperatures but not lower temperatures, makes a gene product with normal function but at higher levels or with higher activity than in wild-type.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele that, at low temperatures but not higher temperatures, makes a gene product with normal function but at higher levels or with higher activity than in wild-type..
allele_class
FBcv:0000780
cold sensitive hypermorphic allele
An allele that, at low temperatures but not higher temperatures, makes a gene product with normal function but at higher levels or with higher activity than in wild-type..
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred from genetic evidence to make a normal gene product at increased levels or with increased activity compared to wild-type, where this increased amount or activity is present at some temperatures (non-permissive temperatures) but not others (permissive temperatures), and where the genetic evidence consists of the observation that extra copies in the genome increase the expressivity and/or penetrance of the phenotype at the non-permissive temperatures.
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000781
temperature conditional hypermorphic allele - genetic evidence
An allele inferred from genetic evidence to make a normal gene product at increased levels or with increased activity compared to wild-type, where this increased amount or activity is present at some temperatures (non-permissive temperatures) but not others (permissive temperatures), and where the genetic evidence consists of the observation that extra copies in the genome increase the expressivity and/or penetrance of the phenotype at the non-permissive temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred from genetic evidence to make a normal gene product at increased levels or with increased activity compared to wild-type, where this increased amount or activity is present at low temperatures (non-permissive temperatures) but not higher temperatures (permissive temperatures), and where the genetic evidence consists of the observation that extra copies in the genome increase the expressivity and/or penetrance of the phenotype at the non-permissive temperatures.
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000782
cold sensitive hypermorphic allele - genetic evidence
An allele inferred from genetic evidence to make a normal gene product at increased levels or with increased activity compared to wild-type, where this increased amount or activity is present at low temperatures (non-permissive temperatures) but not higher temperatures (permissive temperatures), and where the genetic evidence consists of the observation that extra copies in the genome increase the expressivity and/or penetrance of the phenotype at the non-permissive temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele inferred from genetic evidence to make a normal gene product at increased levels or with increased activity compared to wild-type, where this increased amount or activity is present at high temperatures (non-permissive temperatures) but not lower temperatures (permissive temperatures), and where the genetic evidence consists of the observation that extra copies in the genome increase the expressivity and/or penetrance of the phenotype at the non-permissive temperatures.
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000783
heat sensitive hypermorphic allele - genetic evidence
An allele inferred from genetic evidence to make a normal gene product at increased levels or with increased activity compared to wild-type, where this increased amount or activity is present at high temperatures (non-permissive temperatures) but not lower temperatures (permissive temperatures), and where the genetic evidence consists of the observation that extra copies in the genome increase the expressivity and/or penetrance of the phenotype at the non-permissive temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
An allele shown by molecular evidence to make a functionally wild-type gene product at increased levels or with increased activity where this increased expression or activity occurs at some temperatures but not others.
djs93
2012-03-22T03:55:17Z
allele_class
FBcv:0000784
temperature conditional hypermorphic allele - molecular evidence
An allele shown by molecular evidence to make a functionally wild-type gene product at increased levels or with increased activity where this increased expression or activity occurs at some temperatures but not others.
FBC:DOS
FlyBase:FBrf0049147
An allele shown by molecular evidence to make a functionally wild-type gene product at increased levels or with increased activity where this increased expression or activity occurs at low temperatures but not higher temperatures.
djs93
2012-03-22T03:58:31Z
allele_class
FBcv:0000785
cold sensitive hypermorphic allele - molecular evidence
An allele shown by molecular evidence to make a functionally wild-type gene product at increased levels or with increased activity where this increased expression or activity occurs at low temperatures but not higher temperatures.
FBC:DOS
FlyBase:FBrf0049147
An allele shown by molecular evidence to make a functionally wild-type gene product at increased levels or with increased activity where this increased expression or activity occurs at high temperatures but not lower temperatures.
djs93
2012-03-22T03:59:43Z
allele_class
FBcv:0000786
heat sensitive hypermorphic allele - molecular evidence
An allele shown by molecular evidence to make a functionally wild-type gene product at increased levels or with increased activity where this increased expression or activity occurs at high temperatures but not lower temperatures.
FBC:DOS
FlyBase:FBrf0049147
A publication issued on a regular, ongoing basis containing separate research articles and other writings such as reviews, comments and conference reports.
djs93
2012-07-10T04:08:06Z
MeSH:D020492
pub_type
Periodicals
FBcv:0000787
journal
A publication issued on a regular, ongoing basis containing separate research articles and other writings such as reviews, comments and conference reports.
FBC:SM
MeSH:D020492
Periodicals
MeSH:D020492
A work consisting of a news item appearing in a general-interest newspaper or other general news periodical, containing information of current and timely interest in the field of medicine or science.
djs93
2012-07-10T04:17:34Z
MeSH:D018431
pub_type
FBcv:0000788
newspaper article
A work consisting of a news item appearing in a general-interest newspaper or other general news periodical, containing information of current and timely interest in the field of medicine or science.
FBC:SM
MeSH:D018431
A record of a nucleotide or protein sequence in some standard format.
djs93
2012-07-10T05:42:47Z
pub_type
FBcv:0000789
sequence record
A record of a nucleotide or protein sequence in some standard format.
FBC:SM
Work consisting of a structured file of information or a set of logically related data stored and retrieved using computer-based means.
djs93
2012-07-13T02:06:57Z
MeSH:D019991
pub_type
FBcv:0000790
database
Work consisting of a structured file of information or a set of logically related data stored and retrieved using computer-based means.
FBC:SM
MeSH:D019991
A phenotype in which the aging process (GO:0007568) is slower than in wild-type.
phenotypic_class
FBcv:0000791
delayed aging
A phenotype in which the aging process (GO:0007568) is slower than in wild-type.
FBC:DOC
A phenotype in which the aging process (GO:0007568) is accelerated compared to wild-type.
phenotypic_class
FBcv:0000792
premature aging
A phenotype in which the aging process (GO:0007568) is accelerated compared to wild-type.
FBC:DOC
An adult phenotype that becomes more severe with age.
djs93
2012-10-10T12:02:35Z
temporal_qualifier
FBcv:0000793
progressive
An adult phenotype that becomes more severe with age.
FBC:DOS
Cell autonomy statements describe the cellular focus of mutant phenotype, generally revealed by genetic mosaic analysis, in terms of whether the mutant has its phenotypic effect limited to, or not limited to, cells of the mutant genotype.
genotype_to_phenotype_relation
FBcv:0000797
cell autonomy qualifier
Cell autonomy statements describe the cellular focus of mutant phenotype, generally revealed by genetic mosaic analysis, in terms of whether the mutant has its phenotypic effect limited to, or not limited to, cells of the mutant genotype.
FBC:rd
FlyBase miscellaneous CV
FBcv:0000799
gene descriptor
true
FlyBase miscellaneous CV
FBcv:0000801
polymorphism assay
true
FlyBase miscellaneous CV
restriction fragment length polymorphism
FBcv:0000803
RFLP
true
FlyBase miscellaneous CV
FBcv:0000805
DNA sequence variant
true
Descriptor that relates to aspects of an allele.
FlyBase miscellaneous CV
FBcv:0000807
allele descriptor
Descriptor that relates to aspects of an allele.
FBC:MMC
Qualifier that describes an observable phenotype.
FlyBase miscellaneous CV
FBcv:0000809
phenotype qualifier
Qualifier that describes an observable phenotype.
FBC:MMC
Qualifier that describes a particular quality of an observable phenotype.
FlyBase miscellaneous CV
FBcv:0000811
qualitative qualifier
Qualifier that describes a particular quality of an observable phenotype.
FBC:MMC
A clone of cells that share a genotype.
clone_qualifier
clone qualifier
FBcv:0000812
clone of cells
A clone of cells that share a genotype.
FBC:DOS
.
mutation induced by nitrogen mustard exposure
origin_of_mutation
2-chloro-N-(2-chloroethyl)-N-methylethanamine
CB1414
HN2
mechlorethamine
FBcv:0000813
nitrogen mustard
.
CHEBI:37598
.
mutation induced by 1,4-dimethanesulfonoxybutane exposure
mutation induced by busulfan exposure
origin_of_mutation
CB2041
busulfan
FBcv:0000814
1,4-dimethanesulfonoxybutane
.
CHEBI:28901
busulfan
CHEBI:28901
.
chlorambucil
mutation induced by chlorambucil exposure
mutation induced by p-N,N-di-(2-chloroethyl)aminophenylbutyric acid exposure
origin_of_mutation
CB1348
FBcv:0000815
p-N,N-di-(2-chloroethyl)aminophenylbutyric acid
.
CHEBI:28830
chlorambucil
CHEBI:28830
An allele that completely lacks function (i.e. whose gene productive is completely inactive) at low temperatures, but that retains at least some function at higher temperatures.
FlyBase miscellaneous CV
FBcv:0001003
cold sensitive amorphic allele
An allele that completely lacks function (i.e. whose gene productive is completely inactive) at low temperatures, but that retains at least some function at higher temperatures.
FBC:DOS
FlyBase:FBrf0002371
FlyBase:FBrf0049147
Phenotype expressed only in the presence of beta-estradiol (CHEBI:16469).
conditional beta-estradiol
environmental_qualifier
FBcv:0001315
beta-estradiol conditional
Phenotype expressed only in the presence of beta-estradiol (CHEBI:16469).
FBC:DOS
Phenotype that is a defect in endocytosis (GO:0006897). 'endocytosis' is defined as: '$sub_GO:0006897'
phenotypic_class
FBcv:0001324
fbcvsubset_mgiribbons
endocytosis defective
Phenotype that is a defect in endocytosis (GO:0006897). 'endocytosis' is defined as: '$sub_GO:0006897'
FBC:DOS
phenotypic_class
FBcv:0001325
fbcvsubset_mgiribbons
exocytosis defective
A defect in or loss of some anatomical structure or biological process compared to wild-type.
phenotypic class
phenotypic_class
FBcv:0001347
do_not_annotate
The subclasses of this term classify Drosophila phenotypes into different common categories. They have been chosen by FlyBase to reflect phenotype terms most often reported by Drosophila researchers in the published literature.
phenotype
A defect in or loss of some anatomical structure or biological process compared to wild-type.
FBC:DOS
Mutation induced by the transposable activity caused by Minos, a DNA transposable element. The minos element is 1.4 kilobases in length with 254 base pairs inverted terminal repeats. It specifically targets TA dinucleotides and generates a flanking duplication of 2 base pairs upon insertion. Mobilization is induced by the activity of the minos transposase.
mutation induced by minos activity
origin_of_mutation
FBcv:0001500
minos activity
Mutation induced by the transposable activity caused by Minos, a DNA transposable element. The minos element is 1.4 kilobases in length with 254 base pairs inverted terminal repeats. It specifically targets TA dinucleotides and generates a flanking duplication of 2 base pairs upon insertion. Mobilization is induced by the activity of the minos transposase.
FBC:DOS
FlyBase:FBrf0202435
98
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to eclosion from the pupal case (the end of the P-stage).
lethal - all die before end of pharate adult stage
phenotypic_class
As the P-Stage and the 'pharate adult stage' have the same end, there is no need for a seprate term for 'lethal - all die before end of pharate adult stage.
lethal - all die before end of P-stage
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to eclosion from the pupal case (the end of the P-stage).
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the first instar larval stage.
phenotypic_class
lethal - all die before end of first instar larval stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the first instar larval stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the larval stage.
lethal - all die before end of third instar larval stage
phenotypic_class
As the larval stage and third instar larval stage have the same end, there is no need for a separate term for 'lethal - all die before end of third instar larval stage'.
lethal - all die before end of larval stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the larval stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the second instar larval stage.
phenotypic_class
lethal - all die before end of second instar larval stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the second instar larval stage.
FBC:DOS
5
A phenotype that is an increase in the rate of death in a population at any stage of life (during development or adulthood), over the rate seen in a wild type control population.
phenotypic_class
fbcvsubset_mgiribbons
increased mortality
A phenotype that is an increase in the rate of death in a population at any stage of life (during development or adulthood), over the rate seen in a wild type control population.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the P-stage.
phenotypic_class
lethal - all die during P-stage
A phenotype of a population that is the death of all animals in that population during the P-stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the first instar larval stage.
phenotypic_class
lethal - all die during first instar larval stage
A phenotype of a population that is the death of all animals in that population during the first instar larval stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the larval stage.
phenotypic_class
lethal - all die during larval stage
A phenotype of a population that is the death of all animals in that population during the larval stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the second instar larval stage.
phenotypic_class
lethal - all die during second instar larval stage
A phenotype of a population that is the death of all animals in that population during the second instar larval stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the third instar larval stage.
phenotypic_class
lethal - all die during third instar larval stage
A phenotype of a population that is the death of all animals in that population during the third instar larval stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the P-stage.
phenotypic_class
majority die during P-stage
A phenotype of a population that is the death of the majority of animals in that population during the P-stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the first instar larval stage.
phenotypic_class
majority die during first instar larval stage
A phenotype of a population that is the death of the majority of animals in that population during the first instar larval stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the larval stage.
phenotypic_class
majority die during larval stage
A phenotype of a population that is the death of the majority of animals in that population during the larval stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the second instar larval stage.
phenotypic_class
majority die during second instar larval stage
A phenotype of a population that is the death of the majority of animals in that population during the second instar larval stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the third instar larval stage.
phenotypic_class
majority die during third instar larval stage
A phenotype of a population that is the death of the majority of animals in that population during the third instar larval stage.
FBC:DOS
5
98
A phenotype of a population that is the death of some significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
partially lethal
A phenotype of a population that is the death of some significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
FBC:KM
5
A phenotype of a population that is the death of a significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
increased mortality during development
A phenotype of a population that is the death of a significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the P-stage.
phenotypic_class
some die during P-stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the P-stage.
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the first instar larval stage.
phenotypic_class
some die during first instar larval stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the first instar larval stage.
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the second instar larval stage.
phenotypic_class
some die during second instar larval stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the second instar larval stage.
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the larval stage.
phenotypic_class
some die during larval stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the larval stage.
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the third instar larval stage.
phenotypic_class
some die during third instar larval stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the third instar larval stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the pharate adult stage.
phenotypic_class
lethal - all die during pharate adult stage
A phenotype of a population that is the death of all animals in that population during the pharate adult stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the prepupal stage.
phenotypic_class
lethal - all die before end of prepupal stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the prepupal stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the pupal stage.
phenotypic_class
lethal - all die before end of pupal stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the pupal stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the pupal stage.
phenotypic_class
lethal - all die during pupal stage
A phenotype of a population that is the death of all animals in that population during the pupal stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the prepupal stage.
phenotypic_class
lethal - all die during prepupal stage
A phenotype of a population that is the death of all animals in that population during the prepupal stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the embryonic stage.
phenotypic_class
lethal - all die before end of embryonic stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the embryonic stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population during the embryonic stage.
phenotypic_class
lethal - all die during embryonic stage
98
Need to add local reflexivity to part_of for this to work. And really need to be using continuant part of.
A phenotype of a population that is the death of all animals in that population during the embryonic stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the pupal stage.
phenotypic_class
majority die during pupal stage
A phenotype of a population that is the death of the majority of animals in that population during the pupal stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the prepupal stage.
phenotypic_class
majority die during prepupal stage
A phenotype of a population that is the death of the majority of animals in that population during the prepupal stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the pharate adult stage.
phenotypic_class
majority die during pharate adult stage
A phenotype of a population that is the death of the majority of animals in that population during the pharate adult stage.
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population during the embryonic stage.
phenotypic_class
This term is agnostic about whether any survive to adulthood.
majority die during embryonic stage
A phenotype of a population that is the death of the majority of animals in that population during the embryonic stage.
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the pharate adult stage.
phenotypic_class
some die during pharate adult stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the pharate adult stage.
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the pupal stage.
phenotypic_class
some die during pupal stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the pupal stage.
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the prepupal stage.
phenotypic_class
some die during prepupal stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the prepupal stage.
FBC:DOS
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the embryonic stage.
phenotypic_class
some die during embryonic stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the embryonic stage.
FBC:DOS
98
A phenotype of a population that is the death of all animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
phenotypic_class
lethal - all die during immature adult stage
A phenotype of a population that is the death of all animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
50
A phenotype of a population that is the death of the majority of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
phenotypic_class
majority die during immature adult stage
A phenotype of a population that is the death of the majority of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
5
A phenotype of a population that is the death of some significant number of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
phenotypic_class
some die during immature adult stage
A phenotype of a population that is the death of some significant number of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
Qualifier that describes aspects of genetic models of disease.
mmc46
2014-03-27T11:07:29Z
disease_qualifier
FBcv:0003000
disease qualifier
Qualifier that describes aspects of genetic models of disease.
FBC:MMC
Makes a condition better.
mmc46
2014-03-27T11:07:29Z
disease_qualifier
FBcv:0003001
The 'ameliorates' term is used in FlyBase disease annotation when an allele interacts to remove or reduce the severity of the disease phenotype associated with a given disease model (FBC:ST).
ameliorates
Makes a condition better.
FBC:ST
Contrary to expectation, does not make a condition better.
mmc46
2014-03-27T11:07:29Z
disease_qualifier
FBcv:0003002
The 'DOES NOT ameliorate' term is used in FlyBase disease annotation when an allele is expected to remove or reduce the severity of the disease phenotype associated with a given disease model but fails to do so.
DOES NOT ameliorate
Contrary to expectation, does not make a condition better.
FBC:ST
Contrary to expectation, does not make a condition worse.
mmc46
2014-03-27T11:07:29Z
disease_qualifier
FBcv:0003003
The 'DOES NOT exacerbate' term is used in FlyBase disease annotation when an allele is expected to makes the disease phenotype associated with a given disease model more severe but fails to do so (FBC:ST).
DOES NOT exacerbate
Contrary to expectation, does not make a condition worse.
FBC:ST
Contrary to expectation, characteristics associated with a given condition are not recapitulated in a different system.
mmc46
2014-03-27T11:07:29Z
disease_qualifier
FBcv:0003004
The 'DOES NOT model' term is used in FlyBase disease annotation when an allele is expected to recapitulate one or more aspects of a particular human disease phenotype in Drosophila but fails to do so (FBC:ST).
DOES NOT model
Contrary to expectation, characteristics associated with a given condition are not recapitulated in a different system.
FBC:ST
Makes a condition worse.
mmc46
2014-03-27T11:07:29Z
disease_qualifier
FBcv:0003005
The 'exacerbates' term is used in FlyBase disease annotation when an allele interacts to make the disease phenotype associated with a given disease model more severe (FBC:ST).
exacerbates
Makes a condition worse.
FBC:ST
Characteristics associated with a given condition recapitulated in a different system.
mmc46
2014-03-27T11:07:29Z
disease_qualifier
FBcv:0003006
The 'model of' term is used in FlyBase disease annotation when alleles (typically of fly or human genes) recapitulate one or more aspect of a human disease phenotype in Drosophila (FBC:ST).
model of
Characteristics associated with a given condition recapitulated in a different system.
FBC:ST
Sequence change induced by a cleavage event that is caused by an endonuclease that recognizes and cleaves specific sequences in double stranded DNA causing double-strand breaks (DSB).
mmc46
2014-03-27T11:07:29Z
change induced by site specific cleavage
origin_of_mutation
FBcv:0003007
site specific cleavage
Sequence change induced by a cleavage event that is caused by an endonuclease that recognizes and cleaves specific sequences in double stranded DNA causing double-strand breaks (DSB).
FlyBase:FBrf0202435
Sequence change caused by a cleavage of a specific DNA sequence induced by CRISPR (clustered regularly interspaced short palindromic repeats)/Cas9 nuclease system. This system relies on the transcription of a chimeric guide RNA (gRNA) which directs the Cas9 endonuclease to a specified DNA sequence through basepairing to 20 nucleotide CRISPR target sites. These sites are located next to a 3 nucleotide protospacer adjacent motif (PAM) required for DNA cleavage.
mmc46
2014-03-27T11:07:29Z
change induced by CRISPR/Cas9 endonuclease cleavage
origin_of_mutation
CRISPR/Cas9 endonuclease
FBcv:0003008
CRISPR/Cas9
Sequence change caused by a cleavage of a specific DNA sequence induced by CRISPR (clustered regularly interspaced short palindromic repeats)/Cas9 nuclease system. This system relies on the transcription of a chimeric guide RNA (gRNA) which directs the Cas9 endonuclease to a specified DNA sequence through basepairing to 20 nucleotide CRISPR target sites. These sites are located next to a 3 nucleotide protospacer adjacent motif (PAM) required for DNA cleavage.
FlyBase:FBrf0222128
FlyBase:FBrf0222292
FlyBase:FBrf0222617
UniProt:Q99ZW2
Sequence change caused by the cleavage of specific DNA sequences by transcription activator-like effector nucleases (TALENs). TALEN proteins comprise a DNA binding domain fused to the catalytic domain of the FokI endonuclease. The DNA binding domain contains a repetitive region within the middle of the protein, consisting of tandem repeats of 34 amino acid segments, with each of these segments recognizing a single base pair. The specificity of the binding is determined by two hypervariable amino acids in positions 12 and 13 (repeat-variable diresidues). Cleavage requires dimerization of FokI. The endonuclease is directed to a target region by a pair of TALENs which bind to adjacent sequences separated by a spacer region, allowing dimerization and promoting cleavage.
mmc46
2014-03-27T11:07:29Z
change induced by TALE endonuclease cleavage
origin_of_mutation
TALE endonuclease
FBcv:0003009
TALEN
Sequence change caused by the cleavage of specific DNA sequences by transcription activator-like effector nucleases (TALENs). TALEN proteins comprise a DNA binding domain fused to the catalytic domain of the FokI endonuclease. The DNA binding domain contains a repetitive region within the middle of the protein, consisting of tandem repeats of 34 amino acid segments, with each of these segments recognizing a single base pair. The specificity of the binding is determined by two hypervariable amino acids in positions 12 and 13 (repeat-variable diresidues). Cleavage requires dimerization of FokI. The endonuclease is directed to a target region by a pair of TALENs which bind to adjacent sequences separated by a spacer region, allowing dimerization and promoting cleavage.
PMID:10954606
PMID:20660643
Sequence change caused by a site specific recombination catalyzed by the serine recombinase phiC31 integrase that recognizes a minimal high-efficiency attP recognition site of 39 base pairs and a minimal high-efficiency attB recognition site of 34 base pairs. The attP and attB sites contain imperfect inverted repeats flanking a short recombination core (TTG) that provides directionality.
mmc46
2014-03-27T11:07:29Z
change induced by phiC31 integrase recombination
origin_of_mutation
FBcv:0003010
phiC31 integrase
Sequence change caused by a site specific recombination catalyzed by the serine recombinase phiC31 integrase that recognizes a minimal high-efficiency attP recognition site of 39 base pairs and a minimal high-efficiency attB recognition site of 34 base pairs. The attP and attB sites contain imperfect inverted repeats flanking a short recombination core (TTG) that provides directionality.
FlyBase:FBrf0174693
FlyBase:FBrf0201927
UniProt:Q9T221
Descriptor that relates aspects of the grouping of genes or gene products.
mmc46
2014-03-28T15:23:42Z
group_descriptor
FBcv:0003011
group descriptor
Descriptor that relates aspects of the grouping of genes or gene products.
FBC:MMC
Genes or gene products that are acknowledged to form a natural biological group.
mmc46
2014-03-28T15:23:42Z
group_descriptor
FBcv:0003012
gene or gene product group
Genes or gene products that are acknowledged to form a natural biological group.
FBC:SM
Two or more genes contiguously arranged where the individual genes are either identical in sequence, or essentially so (SO:0005851).
mmc46
2014-03-28T15:23:42Z
group_descriptor
FBcv:0003013
gene array group
Two or more genes contiguously arranged where the individual genes are either identical in sequence, or essentially so (SO:0005851).
FBC:SM
SO:ma
Genes whose products share a common biological and/or molecular function.
mmc46
2014-03-28T15:23:42Z
group_descriptor
FBcv:0003014
functional group
Genes whose products share a common biological and/or molecular function.
FBC:SM
Genes with the same location on the chromosome and whose products have a similar function.
mmc46
2014-03-28T15:23:42Z
group_descriptor
FBcv:0003015
gene complex group
Genes with the same location on the chromosome and whose products have a similar function.
FBC:SM
http://www.sdbonline.org/fly/aignfam/ensplitc.htm
Genes whose protein products form a macromolecular complex (GO:0043234).
mmc46
2014-03-28T15:23:42Z
group_descriptor
FBcv:0003016
protein complex group
Genes whose protein products form a macromolecular complex (GO:0043234).
FBC:SM
GOC:go_curators
Genes whose products act in a specified signal transduction or metabolic pathway.
mmc46
2014-03-28T15:23:42Z
group_descriptor
FBcv:0003017
pathway group
Genes whose products act in a specified signal transduction or metabolic pathway.
FBC:SM
Genes whose products act in a specified biological process.
mmc46
2014-03-28T15:23:42Z
group_descriptor
FBcv:0003018
process group
Genes whose products act in a specified biological process.
FBC:SM
Mutation caused by the transposable activity caused by the I-element, a non-LTR retrotransposon. The I-element is 5371 base pairs long. Mobilization is induced by the activity of the I-element transposase.
mmc46
2014-09-16T13:30:48Z
mutation induced by I-element activity
origin_of_mutation
FBcv:0003019
I-element activity
Mutation caused by the transposable activity caused by the I-element, a non-LTR retrotransposon. The I-element is 5371 base pairs long. Mobilization is induced by the activity of the I-element transposase.
FlyBase:FBrf0202435
Mutation caused by the transposable activity caused by the Stalker element, a LTR retrotransposon. Mobilization is induced by the activity of the stalker element transposase.
mmc46
2014-09-16T13:30:48Z
mutation induced by Stalker element activity
origin_of_mutation
FBcv:0003020
Stalker element activity
Mutation caused by the transposable activity caused by the Stalker element, a LTR retrotransposon. Mobilization is induced by the activity of the stalker element transposase.
FlyBase:FBrf0202435
Term that describes a dataset.
mmc46
2016-02-24T19:19:21Z
FlyBase miscellaneous CV
FBcv:0003021
dataset descriptor
Term that describes a dataset.
FBC:GD
Term that specifies the dataset component type.
mmc46
2016-02-24T19:19:21Z
dataset_entity_type
FBcv:0003022
dataset entity type
Term that specifies the dataset component type.
FBC:GD
A set of biological data from a single study. Corresponds to the NCBI bioproject, GEO series or SRA study.
mmc46
2016-02-24T19:19:21Z
dataset_entity_type
FBcv:0003023
project
A set of biological data from a single study. Corresponds to the NCBI bioproject, GEO series or SRA study.
FBC:GD
Biological source material characterized by an experiment.
mmc46
2016-02-24T19:19:21Z
dataset_entity_type
FBcv:0003024
biosample
Biological source material characterized by an experiment.
FBC:GD
Quantitative or qualitative assessment of biological source material to measure some attribute.
mmc46
2016-02-24T19:19:21Z
dataset_entity_type
FBcv:0003025
assay
Quantitative or qualitative assessment of biological source material to measure some attribute.
FBC:GD
Analysis of raw data generated by an assay(s) that makes some conclusion.
mmc46
2016-02-24T19:19:21Z
dataset_entity_type
FBcv:0003026
result
Analysis of raw data generated by an assay(s) that makes some conclusion.
FBC:GD
A collection of material reagents.
mmc46
2016-02-24T19:19:21Z
dataset_entity_type
FBcv:0003027
reagent collection
A collection of material reagents.
FBC:GD
The data type content of a dataset.
mmc46
2016-02-24T19:19:21Z
FlyBase miscellaneous CV
FBcv:0003028
dataset data type
The data type content of a dataset.
FBC:GD
The type of project as characterized its data content.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003029
project type
The type of project as characterized its data content.
FBC:GD
A project that groups together related sub-projects.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003030
umbrella project
A project that groups together related sub-projects.
FBC:GD
A project that characterizes an organism's genome sequence.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003031
genome
A project that characterizes an organism's genome sequence.
FBC:GD
A project that characterizes the intraspecific variation of an organism's genome.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003032
genome variation
A project that characterizes the intraspecific variation of an organism's genome.
FBC:GD
A project that characterizes the occupancy profile of a factor that binds directly or indirectly to the genome.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003033
genome binding
A project that characterizes the occupancy profile of a factor that binds directly or indirectly to the genome.
FBC:GD
A project that characterizes the set of transcribed RNA sequences expressed by the genome.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003034
transcriptome
A project that characterizes the set of transcribed RNA sequences expressed by the genome.
FBC:GD
A project that characterizes the set of proteins expressed in an organism.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003035
proteome
A project that characterizes the set of proteins expressed in an organism.
FBC:GD
A project that characterizes the set of inter-molecular interactions in an organism.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003036
interactome
A project that characterizes the set of inter-molecular interactions in an organism.
FBC:GD
A project that characterizes the set of small molecules in an organism.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003037
metabolome
A project that characterizes the set of small molecules in an organism.
FBC:GD
A project that searches for the genes responsible for a particular observable trait.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003038
phenotypic screen
A project that searches for the genes responsible for a particular observable trait.
FBC:GD
A project that searches for chemicals, natural or synthetic, that elicit some biological effect.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003039
chemical screen
A project that searches for chemicals, natural or synthetic, that elicit some biological effect.
FBC:GD
A project that constructs models describing the set of transcripts and polypeptides encoded by some group of genes.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003040
gene model annotation
A project that constructs models describing the set of transcripts and polypeptides encoded by some group of genes.
FBC:GD
A project that reconstructs the evolutionary history of a group of genes or organisms.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003041
phylogenetic analysis
A project that reconstructs the evolutionary history of a group of genes or organisms.
FBC:GD
A project that describes a large material resource that is accessible to the community.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003042
reagent
A project that describes a large material resource that is accessible to the community.
FBC:GD
A project type that is not described by other more specific terms.
mmc46
2016-02-24T19:19:21Z
project_type
FBcv:0003043
other
A project type that is not described by other more specific terms.
FBC:GD
The type of biosample as characterized by its biological source material.
mmc46
2016-02-24T19:19:21Z
biosample_type
FBcv:0003044
biosample type
The type of biosample as characterized by its biological source material.
FBC:GD
A biosample that comprises the whole animal.
mmc46
2016-02-24T19:19:21Z
biosample_type
FBcv:0003045
whole organism
A biosample that comprises the whole animal.
FBC:GD
A biosample derived from a multicellular structure comprising similar cells with some specific function, typically isolated by dissection.
mmc46
2016-02-24T19:19:21Z
biosample_type
FBcv:0003046
tissue
A biosample derived from a multicellular structure comprising similar cells with some specific function, typically isolated by dissection.
FBC:GD
A biosample containing dissociated cells isolated from the organism, typically isolated by affinity capture or sorting methods.
mmc46
2016-02-24T19:19:21Z
biosample_type
FBcv:0003047
isolated cells
A biosample containing dissociated cells isolated from the organism, typically isolated by affinity capture or sorting methods.
FBC:GD
A biosample consisting of cells that were isolated from animal tissue and cultured in vitro for a limited amount of time.
mmc46
2016-02-24T19:19:21Z
biosample_type
FBcv:0003048
primary cell line
A biosample consisting of cells that were isolated from animal tissue and cultured in vitro for a limited amount of time.
FBC:GD
A biosample consisting of cells isolated from animal tissue that have acquired the ability to proliferate indefinitely.
mmc46
2016-02-24T19:19:21Z
biosample_type
FBcv:0003049
immortalized cell line
A biosample consisting of cells isolated from animal tissue that have acquired the ability to proliferate indefinitely.
FBC:GD
The type of assay as characterized by its data content.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003050
assay type
The type of assay as characterized by its data content.
FBC:GD
An assay of 5' capped transcripts, using CAGE to biotinylate and isolate the 7-methylguanosine cap, with subsequent characterization by high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003051
CAGE-Seq
An assay of 5' capped transcripts, using CAGE to biotinylate and isolate the 7-methylguanosine cap, with subsequent characterization by high-throughput sequencing.
FBC:GD
A genome binding assay of some factor as characterized by chromatin immunoprecipitation (ChIP) of that factor and analysis of co-purifying DNA fragments using genome tiling array.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003052
ChIP-chip
A genome binding assay of some factor as characterized by chromatin immunoprecipitation (ChIP) of that factor and analysis of co-purifying DNA fragments using genome tiling array.
FBC:GD
A genome binding assay of some factor as characterized by chromatin immunoprecipitation (ChIP) of that factor and high-throughput sequencing of co-purifying DNA fragments.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003053
ChIP-Seq
A genome binding assay of some factor as characterized by chromatin immunoprecipitation (ChIP) of that factor and high-throughput sequencing of co-purifying DNA fragments.
FBC:GD
An RNA binding assay of some protein as characterized by cross-linking immunoprecipitation (CLiP) and high-throughput sequencing of co-purifying RNA fragments.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003054
CLiP-Seq
An RNA binding assay of some protein as characterized by cross-linking immunoprecipitation (CLiP) and high-throughput sequencing of co-purifying RNA fragments.
FBC:GD
A genome binding assay of some protein as characterized by creating a fusion to DNA adenine methyltransferase and analysis of methylated DNA sequences by genome tiling array.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003055
DamID-chip
A genome binding assay of some protein as characterized by creating a fusion to DNA adenine methyltransferase and analysis of methylated DNA sequences by genome tiling array.
FBC:GD
A genome binding assay of some protein as characterized by creating a fusion to DNA adenine methyltransferase and analysis of methylated DNA sequences by high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003056
DamID-Seq
A genome binding assay of some protein as characterized by creating a fusion to DNA adenine methyltransferase and analysis of methylated DNA sequences by high-throughput sequencing.
FBC:GD
An assay that characterizes the genome's DNase hypersensitivity using genome tiling array.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003057
DNAse-chip
An assay that characterizes the genome's DNase hypersensitivity using genome tiling array.
FBC:GD
An assay that characterizes the genome's DNase hypersensitivity using high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003058
DNAse-Seq
An assay that characterizes the genome's DNase hypersensitivity using high-throughput sequencing.
FBC:GD
An assay that characterizes transcriptional regulatory elements using formaldehyde-assisted isolation of regulatory elements (FAIRE) and high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003059
FAIRE-Seq
An assay that characterizes transcriptional regulatory elements using formaldehyde-assisted isolation of regulatory elements (FAIRE) and high-throughput sequencing.
FBC:GD
An assay that maps the genome-wide position, orientation and amount of transcriptionally engaged RNA polymerase by global run-on sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003060
GRO-Seq
An assay that maps the genome-wide position, orientation and amount of transcriptionally engaged RNA polymerase by global run-on sequencing.
PMID:19056941
An assay that maps nucleosome positions by using micrococcal nuclease to cleave linker DNA with the subsequent isolation of mononucleosomal DNA fragments that are characterized by genome tiling array.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003061
MNase-chip
An assay that maps nucleosome positions by using micrococcal nuclease to cleave linker DNA with the subsequent isolation of mononucleosomal DNA fragments that are characterized by genome tiling array.
FBC:GD
An assay that maps nucleosome positions by using micrococcal nuclease to cleave linker DNA with the subsequent isolation of mononucleosomal DNA fragments that are characterized by high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003062
MNase-Seq
An assay that maps nucleosome positions by using micrococcal nuclease to cleave linker DNA with the subsequent isolation of mononucleosomal DNA fragments that are characterized by high-throughput sequencing.
FBC:GD
An assay of 5'-capped transcripts using the orthogonal approaches of reverse transcriptase template-switching and cap-trapping, with subsequent characterization by high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003063
RAMPAGE-Seq
An assay of 5'-capped transcripts using the orthogonal approaches of reverse transcriptase template-switching and cap-trapping, with subsequent characterization by high-throughput sequencing.
PMID:22936248
An assay mapping genomic replication patterns by labeling newly synthesized DNA in vivo with 5-bromo-2-deoxyuridine (BrdU), with subsequent affinity purification and characterization by high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003064
Repli-Seq
An assay mapping genomic replication patterns by labeling newly synthesized DNA in vivo with 5-bromo-2-deoxyuridine (BrdU), with subsequent affinity purification and characterization by high-throughput sequencing.
PMID:19966280
Ribosome profiling, an assay in which mRNA fragments protected by ribosomes are isolated and characterized by high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003065
Ribo-Seq
Ribosome profiling, an assay in which mRNA fragments protected by ribosomes are isolated and characterized by high-throughput sequencing.
PMID:22056041
An assay in which a factor is immunoprecipitated and the associated RNA sequences are characterized by high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003066
RIP-Seq
An assay in which a factor is immunoprecipitated and the associated RNA sequences are characterized by high-throughput sequencing.
PMID:21051541
Measurement of global transcript abundance by hybridization of cDNA to an oligonucleotide array, in which the array contains a set of probes designed with complementarity to each annotated transcript.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003067
RNA expression microarray
Measurement of global transcript abundance by hybridization of cDNA to an oligonucleotide array, in which the array contains a set of probes designed with complementarity to each annotated transcript.
FBC:GD
A quantitative method for mapping transcribed regions, in which complementary DNA fragments are subjected to high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003068
RNA-Seq
A quantitative method for mapping transcribed regions, in which complementary DNA fragments are subjected to high-throughput sequencing.
PMID:18451266
Measurement of transcribed regions across the genome by hybridization of cDNA to an oligonucleotide array, in which the genome is represented by oligonucleotides at regularly spaced intervals.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003069
RNA tiling array
Measurement of transcribed regions across the genome by hybridization of cDNA to an oligonucleotide array, in which the genome is represented by oligonucleotides at regularly spaced intervals.
FBC:GD
An assay characterizing of small RNA species 17-35 nt in size by high-throughput sequencing.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003070
short RNA-Seq
An assay characterizing of small RNA species 17-35 nt in size by high-throughput sequencing.
FBC:GD
An assay that identifies and characterizes of proteins and their post-translational modifications by mass spectrometry.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003071
protein mass spectrometry
An assay that identifies and characterizes of proteins and their post-translational modifications by mass spectrometry.
FBC:GD
An assay that identifies and characterizes lipids by mass spectrometry.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003072
lipid mass spectrometry
An assay that identifies and characterizes lipids by mass spectrometry.
FBC:GD
An assay that identifies and characterizes complex carbohydrates by mass spectrometry.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003073
carbohydrate mass spectrometry
An assay that identifies and characterizes complex carbohydrates by mass spectrometry.
FBC:GD
An assay that identifies and characterizes small metabolites by mass spectrometry.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003074
metabolite mass spectrometry
An assay that identifies and characterizes small metabolites by mass spectrometry.
FBC:GD
An assay that identifies the molecules that interact with a particular bait factor by mass spectrometry.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003075
affinity purification and mass spectrometry
An assay that identifies the molecules that interact with a particular bait factor by mass spectrometry.
FBC:GD
An assay that tests proteins pairwise for interaction by fusing each to separate, complementary domains of some protein, usually a transcription factor. Upon interaction, the proximity of the complementary domains generates reporter activity.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003076
two hybrid screen
An assay that tests proteins pairwise for interaction by fusing each to separate, complementary domains of some protein, usually a transcription factor. Upon interaction, the proximity of the complementary domains generates reporter activity.
FBC:GD
An assay that uses a panel of RNA interference (RNAi) reagents to systematically knockdown a large set of genes, one at a time, to identify those that are involved in some biological process.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003077
RNAi screen
An assay that uses a panel of RNA interference (RNAi) reagents to systematically knockdown a large set of genes, one at a time, to identify those that are involved in some biological process.
FBC:GD
An assay that uses a panel of deficiencies to systematically delete large segments of the genome to identify those segments that are involved in some biological process.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003078
deficiency screen
An assay that uses a panel of deficiencies to systematically delete large segments of the genome to identify those segments that are involved in some biological process.
FBC:GD
An assay that uses a large set of mutations to identify genes that are involved in some biological process.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003079
genetic screen
An assay that uses a large set of mutations to identify genes that are involved in some biological process.
FBC:GD
An assay that characterizes copy number variation of the genome in a sample using genome tiling array.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003080
comparative genomic hybridization by array
An assay that characterizes copy number variation of the genome in a sample using genome tiling array.
FBC:GD
An assay of genomic sequence that generates a large number of random genomic sequences, typically derived from paired-end sequencing of genomic fragments, that together give a complete (albeit scrambled) representation of the entire genome.
mmc46
2016-02-24T19:19:21Z
assay_type
FBcv:0003081
whole genome shotgun sequencing
An assay of genomic sequence that generates a large number of random genomic sequences, typically derived from paired-end sequencing of genomic fragments, that together give a complete (albeit scrambled) representation of the entire genome.
FBC:GD
The type of result as characterized by its data content.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003082
result type
The type of result as characterized by its data content.
FBC:GD
A result that maps the relative position of genetic markers, where distances are measured by recombination frequency.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003083
genetic map
A result that maps the relative position of genetic markers, where distances are measured by recombination frequency.
FBC:GD
A result that maps the relative position of genes and other sequence landmarks.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003084
physical map
A result that maps the relative position of genes and other sequence landmarks.
FBC:GD
A result in which a collection of whole genome shotgun sequences is combined to build successively larger contigs.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003085
whole genome shotgun assembly
A result in which a collection of whole genome shotgun sequences is combined to build successively larger contigs.
FBC:GD
The result of reconstruction of the genome achieved by aligning and merging smaller fragments.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003086
genome assembly
The result of reconstruction of the genome achieved by aligning and merging smaller fragments.
FBC:GD
The result of extensive sequence alignment and merging to produce a genome assembly that serves as the current reference for a particular organism.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003087
reference genome assembly
The result of extensive sequence alignment and merging to produce a genome assembly that serves as the current reference for a particular organism.
FBC:GD
A result that provides the expression values for all (or some subset) of genes in a given biological sample.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003088
gene expression profile
A result that provides the expression values for all (or some subset) of genes in a given biological sample.
FBC:GD
A result that profiles expressed RNA-seq sequences along genome.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003089
RNA-seq profile
A result that profiles expressed RNA-seq sequences along genome.
FBC:GD
A result that profiles the genome occupancy for some factor.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003090
genome binding profile
A result that profiles the genome occupancy for some factor.
FBC:GD
A result of Ribo-seq analysis that profiles ribosome protected sequences along the genome.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003091
mRNA translation profile
A result of Ribo-seq analysis that profiles ribosome protected sequences along the genome.
FBC:GD
An analysis that results in the identification of discrete transcription start site regions.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003092
TSS identification
An analysis that results in the identification of discrete transcription start site regions.
FBC:GD
An analysis that results in the identification of discrete polyadenylation sites.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003093
poly(A) site identification
An analysis that results in the identification of discrete polyadenylation sites.
FBC:GD
An analysis that results in the identification of discrete exon junctions.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003094
exon junction identification
An analysis that results in the identification of discrete exon junctions.
FBC:GD
An analysis that results in the identification of discrete A-to-I RNA editing sites.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003095
editing site identification
An analysis that results in the identification of discrete A-to-I RNA editing sites.
FBC:GD
An analysis that results in the identification of discrete DNA or RNA binding sites.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003096
binding site identification
An analysis that results in the identification of discrete DNA or RNA binding sites.
FBC:GD
An analysis that results from the comparison of expression profiles for different conditions to identify genes that are regulated by those conditions.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003097
differential gene expression analysis
An analysis that results from the comparison of expression profiles for different conditions to identify genes that are regulated by those conditions.
FBC:GD
The analysis of a gene expression profiles to define sets of genes that share similar expression characteristics.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003098
expression clustering
The analysis of a gene expression profiles to define sets of genes that share similar expression characteristics.
FBC:GD
A result that represents a set of genes that share similar expression characteristics across some set of conditions.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003099
expression cluster
A result that represents a set of genes that share similar expression characteristics across some set of conditions.
FBC:GD
A result that represents a set of genes that have some shared characteristic.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003100
gene list
A result that represents a set of genes that have some shared characteristic.
FBC:GD
A result that represents a set of protein-protein interactions for a given sample.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003101
protein-protein interaction
A result that represents a set of protein-protein interactions for a given sample.
FBC:GD
A result that represents a set of RNA-protein interactions for a given sample.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003102
RNA-protein interaction
A result that represents a set of RNA-protein interactions for a given sample.
FBC:GD
A result that represents a set of RNA-RNA interactions for a given sample.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003103
RNA-RNA interaction
A result that represents a set of RNA-RNA interactions for a given sample.
FBC:GD
A result that represents a set of small molecules identified for a given sample.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003104
metabolite profile
A result that represents a set of small molecules identified for a given sample.
FBC:GD
A result that represents the range of phenotypes obtained for a set of genetic perturbations.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003105
phenotypic profile
A result that represents the range of phenotypes obtained for a set of genetic perturbations.
FBC:GD
A result that represents the copy number variation across the genome for a given sample.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003106
genomic copy number profile
A result that represents the copy number variation across the genome for a given sample.
FBC:GD
A result that represents the mapping of coordinates between two different genome assemblies for a given species.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003107
liftover file
A result that represents the mapping of coordinates between two different genome assemblies for a given species.
FBC:GD
A result that is produced from the detailed examination of data to come to some conclusion.
mmc46
2016-02-24T19:19:21Z
result_type
FBcv:0003108
analysis
A result that is produced from the detailed examination of data to come to some conclusion.
FBC:GD
The type of reagent collection as characterized by the material resources comprised by the collection.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003109
reagent collection type
The type of reagent collection as characterized by the material resources comprised by the collection.
FBC:GD
A collection of large chromosomal aberrations, available as fly stocks, which may include duplications, deletions, inversions or translocations.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003110
aberration stock collection
A collection of large chromosomal aberrations, available as fly stocks, which may include duplications, deletions, inversions or translocations.
FBC:GD
A collection of alleles that are available as fly stocks.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003111
allele collection
A collection of alleles that are available as fly stocks.
FBC:GD
A collection of cDNAs available as plasmids.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003112
cDNA library
A collection of cDNAs available as plasmids.
FBC:GD
A collection of transgenic constructs that are available as fly stocks.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003113
construct collection
A collection of transgenic constructs that are available as fly stocks.
FBC:GD
A collection of PCR products used for the synthesis of double-stranded RNA to induce RNA-interference.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003114
dsRNA amplicon collection
A collection of PCR products used for the synthesis of double-stranded RNA to induce RNA-interference.
FBC:GD
A collection of transgenic constructs, available as fly stocks, designed to target gene knockdown by RNA-interference.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003115
RNAi construct collection
A collection of transgenic constructs, available as fly stocks, designed to target gene knockdown by RNA-interference.
FBC:GD
A collection of genomic DNA clones available as plasmids. This may include BAC, YAC, fosmid, cosmid and P1 clone collections.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003116
genomic clone collection
A collection of genomic DNA clones available as plasmids. This may include BAC, YAC, fosmid, cosmid and P1 clone collections.
FBC:GD
A collection of wild-type fly strains.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003117
fly strain collection
A collection of wild-type fly strains.
FBC:GD
A collection of transgenic construct insertions available as fly stocks.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003118
transgenic insertion collection
A collection of transgenic construct insertions available as fly stocks.
FBC:GD
A collection of transposable element insertions available as fly stocks.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003119
TE insertion stock collection
A collection of transposable element insertions available as fly stocks.
FBC:GD
A collection of hybridization targets on a microarray.
mmc46
2016-02-24T19:19:21Z
reagent_collection_type
FBcv:0003120
microarray library
A collection of hybridization targets on a microarray.
FBC:GD
A descriptor that describes some aspect of a dataset.
mmc46
2016-02-24T19:19:21Z
FlyBase miscellaneous CV
FBcv:0003121
dataset attribute
A descriptor that describes some aspect of a dataset.
FBC:GD
A descriptor that describes some aspect of a project.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003122
project attribute
A descriptor that describes some aspect of a project.
FBC:GD
The aim of the project investigation, as defined by the key variables in the set of experiments.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003123
study design
The aim of the project investigation, as defined by the key variables in the set of experiments.
FBC:GD
A project study design that aims to compare different species.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003124
species study
A project study design that aims to compare different species.
FBC:GD
A project study design that aims to compare different wild-type strains for a given species.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003125
strain study
A project study design that aims to compare different wild-type strains for a given species.
FBC:GD
A project study design that aims to characterize the biological mechanisms responsible for the development or maintenance of the sex-related properties of an organism.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003126
sex study
A project study design that aims to characterize the biological mechanisms responsible for the development or maintenance of the sex-related properties of an organism.
FBC:CT
A project study design investigating the biological mechanisms responsible for the control or maintenance of development.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003127
developmental stage study
A project study design investigating the biological mechanisms responsible for the control or maintenance of development.
FBC:CT
A project study design investigating the biological mechanisms responsible for the control or maintenance of circadian rhythm.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003128
circadian rhythm study
A project study design investigating the biological mechanisms responsible for the control or maintenance of circadian rhythm.
FBC:CT
A project study design investigating the biological mechanisms of the cell responsible for maintaining or controlling aspects of the cell cycle.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003129
cell cycle study
A project study design investigating the biological mechanisms of the cell responsible for maintaining or controlling aspects of the cell cycle.
FBC:CT
A project study design investigating the biological mechanisms of intact or dissected tissues in order to understand their form or function.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003130
tissue type study
A project study design investigating the biological mechanisms of intact or dissected tissues in order to understand their form or function.
FBC:CT
A project study design involving the use of cultured or extracted cells with an investigative focus of studying a cellular property.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003131
cell type study
A project study design involving the use of cultured or extracted cells with an investigative focus of studying a cellular property.
FBC:CT
A project study design examining subcellular components of cells including organelles, the nucleus, or any other grouping of intra- or extracellular material.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003132
subcellular component study
A project study design examining subcellular components of cells including organelles, the nucleus, or any other grouping of intra- or extracellular material.
FBC:CT
A project study design in which the goal of the study is to examine properties of a specific gene or set of genes.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003133
gene study
A project study design in which the goal of the study is to examine properties of a specific gene or set of genes.
FBC:CT
A project study design investigating the effects of a biotic stimulus on some aspect of an organism.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003134
biotic stimulus study
A project study design investigating the effects of a biotic stimulus on some aspect of an organism.
FBC:CT
A project study design investigating the effects of a chemical stimulus on some aspect of an organism.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003135
chemical stimulus study
A project study design investigating the effects of a chemical stimulus on some aspect of an organism.
FBC:CT
A project study design investigating the effects of a physical stimulus on some aspect of an organism.
mmc46
2016-02-24T19:19:21Z
project_attribute
FBcv:0003136
physical stimulus study
A project study design investigating the effects of a physical stimulus on some aspect of an organism.
FBC:CT
Characteristics pertaining to the growth conditions, treatments and tissue isolation methods used to generate and obtain a biosample.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003137
biosample attribute
Characteristics pertaining to the growth conditions, treatments and tissue isolation methods used to generate and obtain a biosample.
FBC:GD
The scope and purity of a biosample, ranging from single cell to environmental sample.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003138
biosample scope
The scope and purity of a biosample, ranging from single cell to environmental sample.
http://www.ncbi.nlm.nih.gov/books/NBK54364/
A biosample that is derived from only a single cell.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003139
single cell sample
A biosample that is derived from only a single cell.
FBC:CT
A biosample that is derived from one individual.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003140
single individual sample
A biosample that is derived from one individual.
FBC:CT
A biosample that is derived from multiple individuals.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003141
multi-individual sample
A biosample that is derived from multiple individuals.
FBC:CT
A biosample that is derived from multiple species.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003142
multispecies sample
A biosample that is derived from multiple species.
FBC:CT
A biosample derived from an environmental sample for which the species content is unknown.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003143
environmental
A biosample derived from an environmental sample for which the species content is unknown.
http://www.ncbi.nlm.nih.gov/books/NBK54364/
A biosample that was synthesized in a laboratory.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003144
artificial
A biosample that was synthesized in a laboratory.
http://www.ncbi.nlm.nih.gov/books/NBK54364/
A sample that originated from a wild caught population and is considered true wild type.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003145
wild caught
A sample that originated from a wild caught population and is considered true wild type.
FBC:CT
Growth conditions and treatments used to culture the organism prior to biosample isolation.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003146
growth condition
Growth conditions and treatments used to culture the organism prior to biosample isolation.
FBC:GD
An inbred strain is subjected to artificial laboratory selection of some trait over the course of several generations.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003147
trait selection
An inbred strain is subjected to artificial laboratory selection of some trait over the course of several generations.
FBC:GD
A sample that is derived from a controlled mating between individuals of two specific species.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003148
interspecific hybrid
A sample that is derived from a controlled mating between individuals of two specific species.
FBC:CT
A sample in which the individuals have undergone mating.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003149
mated
A sample in which the individuals have undergone mating.
FBC:CT
A sample in which the individuals have not undergone mating.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003150
virgin
A sample in which the individuals have not undergone mating.
FBC:CT
A sample that is maintained in conditions comparable to constant darkness.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003151
constant dark
A sample that is maintained in conditions comparable to constant darkness.
FBC:CT
A sample that is maintained in conditions comparable to constant light.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003152
constant light
A sample that is maintained in conditions comparable to constant light.
FBC:CT
A sample that is maintained in conditions with a specific cycle that included exposure to both light and darkness.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003153
light-dark cycle
A sample that is maintained in conditions with a specific cycle that included exposure to both light and darkness.
FBC:CT
A sample that is derived from a primary cell culture.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003154
primary cell culture
A sample that is derived from a primary cell culture.
FBC:CT
Characteristics pertaining to the cell culture conditions used to generate the biosample.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003155
cell culture property
Characteristics pertaining to the cell culture conditions used to generate the biosample.
FBC:GD
A sample that contains a transfected agent which is not incorporated into the genome.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003156
transiently transfected cell line
A sample that contains a transfected agent which is not incorporated into the genome.
FBC:CT
A sample that contains a transfected agent which has been stably incorporated into the genome.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003157
stably transfected cell line
A sample that contains a transfected agent which has been stably incorporated into the genome.
FBC:CT
A sample that is derived from a population of cells undergoing a log phase of division.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003158
log phase cells
A sample that is derived from a population of cells undergoing a log phase of division.
FBC:CT
A sample that is derived from a population of cells undergoing a stationary phase of division.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003159
stationary phase cells
A sample that is derived from a population of cells undergoing a stationary phase of division.
FBC:CT
A sample that is derived from a population of cells undergoing cell cycle division in a synchronized manner.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003160
cell cycle synchronized cells
A sample that is derived from a population of cells undergoing cell cycle division in a synchronized manner.
FBC:CT
The cells that are grown in liquid culture.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003161
suspension culture
The cells that are grown in liquid culture.
FBC:GD
The cells that are grown on plates.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003162
adherent culture
The cells that are grown on plates.
FBC:GD
The conditioned medium containing factors secreted by cultured cells that has been isolated.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003163
culture supernatant
The conditioned medium containing factors secreted by cultured cells that has been isolated.
FBC:GD
Methods pertaining to the experimental treatment or isolation of a biosample.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003164
biosample method
Methods pertaining to the experimental treatment or isolation of a biosample.
FBC:GD
A sample that has undergone a disruption to the activity of one of its genes.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003165
gene perturbation
A sample that has undergone a disruption to the activity of one of its genes.
FBC:GD
Treatment of an organism with a biological stimulus, such as an infectious or parasitic agent.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003166
biotic treatment
Treatment of an organism with a biological stimulus, such as an infectious or parasitic agent.
FBC:GD
A sample that has been exposed to one or more forms of chemical agent.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003167
chemical treatment
A sample that has been exposed to one or more forms of chemical agent.
FBC:CT
A sample that has been exposed to changes in the physical environment including temperature, pressure and radiation.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003168
physical treatment
A sample that has been exposed to changes in the physical environment including temperature, pressure and radiation.
FBC:GD
A sample that has been dissected from the tissue of a more complete organism.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003169
tissue dissection
A sample that has been dissected from the tissue of a more complete organism.
FBC:CT
A single cell type that has been isolated by affinity purification or fluorescent cell sorting.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003170
cell isolation
A single cell type that has been isolated by affinity purification or fluorescent cell sorting.
FBC:GD
A sample that has undergone fractionation in order to isolate specific subcellular components for study.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003171
subcellular fractionation
A sample that has undergone fractionation in order to isolate specific subcellular components for study.
FBC:CT
A sample in which specific cells within a tissue have been ablated by some method, such as targeted expression of a cell toxin, or laser ablation of fluorescently marked cells.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003172
cell ablation
A sample in which specific cells within a tissue have been ablated by some method, such as targeted expression of a cell toxin, or laser ablation of fluorescently marked cells.
FBC:GD
A sample that has been labelled in a targeted, cell-specific manner.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003173
targeted cell labeling
A sample that has been labelled in a targeted, cell-specific manner.
FBC:CT
Neuronal activity that has been perturbed using genetically controlled agents to activate or depress membrane potential.
mmc46
2016-02-24T19:19:21Z
biosample_attribute
FBcv:0003174
neuronal activity perturbation
Neuronal activity that has been perturbed using genetically controlled agents to activate or depress membrane potential.
FBC:GD
Some characteristic of an assay pertaining to the methods involved in processing the biological source material or generating the raw output data of the assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003175
assay attribute
Some characteristic of an assay pertaining to the methods involved in processing the biological source material or generating the raw output data of the assay.
FBC:GD
A type of biomolecule that is isolated from a biosample and characterized by downstream steps in an assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003176
assay material
A type of biomolecule that is isolated from a biosample and characterized by downstream steps in an assay.
FBC:GD
Material that is derived from isolation of genomic DNA.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003177
genomic DNA isolation
Material that is derived from isolation of genomic DNA.
FBC:CT
Material that is derived from isolation of the total RNA.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003178
total RNA isolation
Material that is derived from isolation of the total RNA.
FBC:CT
Material that is derived from the isolation of RNA containing a poly(A) tail.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003179
poly(A) RNA isolation
Material that is derived from the isolation of RNA containing a poly(A) tail.
FBC:CT
The isolation of small RNA species 17-35 nt in size.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003180
short RNA isolation
The isolation of small RNA species 17-35 nt in size.
FBC:GD
Material that is derived from the isolation of translated messenger RNA.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003181
translated mRNA isolation
Material that is derived from the isolation of translated messenger RNA.
FBC:CT
Material that is derived from the isolation of proteins.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003182
protein isolation
Material that is derived from the isolation of proteins.
FBC:CT
Material that is derived from the isolation of chromatin and its subcellular components and/or binding partners.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003183
chromatin isolation
Material that is derived from the isolation of chromatin and its subcellular components and/or binding partners.
FBC:CT
Isolation of RNA-protein complexes.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003184
RNA-protein isolation
Isolation of RNA-protein complexes.
FBC:GD
Material that is derived from the isolation of metabolites.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003185
metabolite isolation
Material that is derived from the isolation of metabolites.
FBC:CT
The biosample that is depleted of specific biomolecule types before further processing.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003186
assay material depletion
The biosample that is depleted of specific biomolecule types before further processing.
FBC:GD
Material that has undergone the depletion of ribosomal RNA.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003187
rRNA depletion
Material that has undergone the depletion of ribosomal RNA.
FBC:CT
Material that has undergone the depletion of single-stranded RNA.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003188
ssRNA depletion
Material that has undergone the depletion of single-stranded RNA.
FBC:CT
Material that has undergone the depletion of double-stranded RNA.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003189
dsRNA depletion
Material that has undergone the depletion of double-stranded RNA.
FBC:CT
Material that has undergone the depletion of unbound RNA.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003190
unbound RNA depletion
Material that has undergone the depletion of unbound RNA.
FBC:CT
The biosample that is enriched for a specific biomolecule type for further processing.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003191
assay material selection
The biosample that is enriched for a specific biomolecule type for further processing.
FBC:GD
Material that has been selected using Chromatin Immunoprecipitation, or ChIP.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003192
ChIP
Material that has been selected using Chromatin Immunoprecipitation, or ChIP.
FBC:CT
Material that has been selected using DNA Adenine Methyltransferase Identification, or DamID.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003193
DamID
Material that has been selected using DNA Adenine Methyltransferase Identification, or DamID.
FBC:CT
Material that has been selected using formaldehyde-assisted isolation of Regulatory Elements or FAIRE.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003194
FAIRE
Material that has been selected using formaldehyde-assisted isolation of Regulatory Elements or FAIRE.
FBC:CT
Material that has been selected using Cap Analysis Gene Expression, in which the 7-methylguanosine cap at 5' transcript ends is biotinylated and affinity purified.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003195
CAGE
Material that has been selected using Cap Analysis Gene Expression, in which the 7-methylguanosine cap at 5' transcript ends is biotinylated and affinity purified.
PMID:16489339
Chromatin that has been cleaved using micrococcal nuclease to cleave at linker DNA between nucleosomes.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003196
MNase
Chromatin that has been cleaved using micrococcal nuclease to cleave at linker DNA between nucleosomes.
FBC:GD
Material that has been selected from a sample treated by deoxyribonuclease.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003197
DNase
Material that has been selected from a sample treated by deoxyribonuclease.
FBC:CT
Material that has been selected using a low salt chromatin extraction, typically 80mM.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003198
low salt chromatin extraction
Material that has been selected using a low salt chromatin extraction, typically 80mM.
FBC:CT
Material that has been selected using a high salt chromatin extraction, typically 600mM.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003199
high salt chromatin extraction
Material that has been selected using a high salt chromatin extraction, typically 600mM.
FBC:CT
Mononucleosomal fragments, generated by micrococcal nuclease cleavage at linker DNA between nucleosomes, that have been isolated by gel electrophoresis.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003200
mononucleosomal DNA isolation
Mononucleosomal fragments, generated by micrococcal nuclease cleavage at linker DNA between nucleosomes, that have been isolated by gel electrophoresis.
FBC:GD
Material that has been selected using affinity purification.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003201
affinity purification
Material that has been selected using affinity purification.
FBC:CT
Material that has been selected using size fractionation.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003202
size fractionation
Material that has been selected using size fractionation.
FBC:CT
Material that has been selected using short sequences of deoxy-thymine nucleotides to affinity purify RNA containing long polyA stretches.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003203
oligo-dT selection
Material that has been selected using short sequences of deoxy-thymine nucleotides to affinity purify RNA containing long polyA stretches.
FBC:CT
Material that has been selected using short sequences of deoxy-thymine nucleotides to prime first strand cDNA synthesis by reverse transcriptase at long polyA stretches.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003204
oligo-dT priming
Material that has been selected using short sequences of deoxy-thymine nucleotides to prime first strand cDNA synthesis by reverse transcriptase at long polyA stretches.
FBC:CT
Random oligomers that have been used to prime first strand cDNA synthesis by reverse transcriptase at random positions along transcripts.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003205
random priming
Random oligomers that have been used to prime first strand cDNA synthesis by reverse transcriptase at random positions along transcripts.
FBC:GD
Material that has been selected based on density via density sedimentation.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003206
density sedimentation
Material that has been selected based on density via density sedimentation.
FBC:CT
Nucleotide analogs that are used to map the position and orientation of the RNA polymerase active site.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003207
nuclear run-on
Nucleotide analogs that are used to map the position and orientation of the RNA polymerase active site.
FBC:GD
A method used to characterize the biological molecules isolated from a biosample.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003208
assay method
A method used to characterize the biological molecules isolated from a biosample.
FBC:GD
A method that uses Sanger sequencing for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003209
Sanger sequencing
A method that uses Sanger sequencing for this assay.
FBC:CT
A method that uses single molecule sequencing, by highly processive DNA polymerase to generate an extremely long single read on the order of several kilobases, for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003210
single molecule real time sequencing
A method that uses single molecule sequencing, by highly processive DNA polymerase to generate an extremely long single read on the order of several kilobases, for this assay.
FBC:GD
A method that uses high-throughput sequencing for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003211
high-throughput sequencing
A method that uses high-throughput sequencing for this assay.
FBC:CT
A method that uses 454 sequencing, a form of high-throughput sequencing with 400-500 nt read length, for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003212
454 sequencing
A method that uses 454 sequencing, a form of high-throughput sequencing with 400-500 nt read length, for this assay.
FBC:CT
A method that uses Illumina sequencing, a form of high-throughput sequencing, for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003213
Illumina sequencing
A method that uses Illumina sequencing, a form of high-throughput sequencing, for this assay.
FBC:CT
A method that uses an Affymetrix Gene Expression Array, version 1, for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003214
Affymetrix Gene Expression Array 1
A method that uses an Affymetrix Gene Expression Array, version 1, for this assay.
FBC:CT
FBC:GD
A method that uses an Affymetrix Gene Expression Array, version 2, for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003215
Affymetrix Gene Expression Array 2
A method that uses an Affymetrix Gene Expression Array, version 2, for this assay.
FBC:CT
A method that uses a genomic tiling array, a subtype of microarray chip in which the genome is represented by oligonucleotides at regularly spaced intervals, for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003216
genomic tiling array
A method that uses a genomic tiling array, a subtype of microarray chip in which the genome is represented by oligonucleotides at regularly spaced intervals, for this assay.
FBC:CT
A method that uses a peptide array, a subtype of microarray chip, for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003217
peptide array
A method that uses a peptide array, a subtype of microarray chip, for this assay.
FBC:CT
A method that uses mass spectrometry, an analytical technique for sorting ions based on mass, for this assay.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003218
mass spectrometry
A method that uses mass spectrometry, an analytical technique for sorting ions based on mass, for this assay.
FBC:CT
A method that uses two samples, one a control and the other an experimental sample, for this assay. The samples are labeled in different colors and hybridized to the same oligonucleotide array. Each sample is scanned using different excitation and emission parameters.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003219
two channel scanning
A method that uses two samples, one a control and the other an experimental sample, for this assay. The samples are labeled in different colors and hybridized to the same oligonucleotide array. Each sample is scanned using different excitation and emission parameters.
FBC:GD
A method that uses an RNA-seq assay in which only one end of the library fragment is sequenced.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003220
single-end layout
A method that uses an RNA-seq assay in which only one end of the library fragment is sequenced.
FBC:GD
A method that uses an RNA-seq assay in which both ends of the library fragment are sequenced to provide additional mapping constraints.
mmc46
2016-02-24T19:19:21Z
assay_attribute
FBcv:0003221
paired-end layout
A method that uses an RNA-seq assay in which both ends of the library fragment are sequenced to provide additional mapping constraints.
FBC:GD
Some characteristic of a result pertaining to the methods involved in analyzing the input data, or the content or format of the output data.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003222
result attribute
Some characteristic of a result pertaining to the methods involved in analyzing the input data, or the content or format of the output data.
FBC:GD
A genomic mapping profile that distinguishes forward and reverse strand distributions.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003223
stranded profile
A genomic mapping profile that distinguishes forward and reverse strand distributions.
FBC:GD
A genomic mapping profile that does not distinguish between forward and reverse strand mapping.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003224
unstranded profile
A genomic mapping profile that does not distinguish between forward and reverse strand mapping.
FBC:GD
An alignment of high-throughput sequences that includes only those reads mapping uniquely to the genome.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003225
uniquely mapping read alignment
An alignment of high-throughput sequences that includes only those reads mapping uniquely to the genome.
FBC:GD
An alignment of high-throughput sequences that includes reads mapping to multiple sites in the genome. Coverage values for a given sequence weighted equally across the multiple sites to which it maps.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003226
multiply mapping read alignment
An alignment of high-throughput sequences that includes reads mapping to multiple sites in the genome. Coverage values for a given sequence weighted equally across the multiple sites to which it maps.
FBC:GD
A unit of expression (reads per kilobase per million reads) in which high-throughput sequencing reads mapping to a given feature are normalized both to the size of that feature and to the total number of reads in the sample.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003227
RPKM calculation
A unit of expression (reads per kilobase per million reads) in which high-throughput sequencing reads mapping to a given feature are normalized both to the size of that feature and to the total number of reads in the sample.
FBC:GD
A unit of expression (reads per million miRNA reads) in which high-throughput sequencing reads for a given miRNA are normalized against all reads mapping to all miRNA.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003228
RPMM calculation
A unit of expression (reads per million miRNA reads) in which high-throughput sequencing reads for a given miRNA are normalized against all reads mapping to all miRNA.
FBC:GD
A unit of expression (reads per million reads) in which high-throughput sequencing reads for a given type of feature are normalized against all reads mapping to all features of the same type.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003229
RPM calculation
A unit of expression (reads per million reads) in which high-throughput sequencing reads for a given type of feature are normalized against all reads mapping to all features of the same type.
FBC:GD
Sequencing the full extent of selected large clones, typically by sub-cloning large inserts as smaller fragments, to improve the accuracy and completeness of an assembly.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003230
clone-based finishing
Sequencing the full extent of selected large clones, typically by sub-cloning large inserts as smaller fragments, to improve the accuracy and completeness of an assembly.
FlyBase:FBrf0155823
Mapping of restriction enzyme recognition sites to develop a physical map of a genome.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003231
restriction fingerprinting
Mapping of restriction enzyme recognition sites to develop a physical map of a genome.
FBC:GD
Mapping of short (200-500 bp) sequence-tagged sites (STS) landmarks to develop a physical map of a genome.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003232
sequence tagged site mapping
Mapping of short (200-500 bp) sequence-tagged sites (STS) landmarks to develop a physical map of a genome.
FBC:GD
An ordered list of a minimal set of overlapping clones that provides complete coverage across an assembly.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003233
tiling path
An ordered list of a minimal set of overlapping clones that provides complete coverage across an assembly.
FBC:GD
Sequences that have been mapped to mitotic or polytene chromosomes to guide genome assembly.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003234
cytogenetic mapping
Sequences that have been mapped to mitotic or polytene chromosomes to guide genome assembly.
FBC:GD
There is sequence for one or more chromosomes. This could be a completely sequenced chromosome without gaps or a chromosome containing scaffolds or contigs with gaps between them. There may also be unplaced or unlocalized scaffolds.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003235
assembly level - chromosome
There is sequence for one or more chromosomes. This could be a completely sequenced chromosome without gaps or a chromosome containing scaffolds or contigs with gaps between them. There may also be unplaced or unlocalized scaffolds.
http://www.ncbi.nlm.nih.gov/assembly/help/
Some sequence contigs have been connected across gaps to create scaffolds, but no scaffolds have been placed on chromosomes.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003236
assembly level - scaffold
Some sequence contigs have been connected across gaps to create scaffolds, but no scaffolds have been placed on chromosomes.
http://www.ncbi.nlm.nih.gov/assembly/help/
The assembly represents the whole genome, though there may still be gaps.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003237
genome representation - full
The assembly represents the whole genome, though there may still be gaps.
http://www.ncbi.nlm.nih.gov/assembly/help/
The assembly represents only part of the organism's genome, because only a single chromosome was targeted, coverage is <1, or total length is less than half the average for other assemblies of the same species.
mmc46
2016-02-24T19:19:21Z
result_attribute
FBcv:0003238
genome representation - partial
The assembly represents only part of the organism's genome, because only a single chromosome was targeted, coverage is <1, or total length is less than half the average for other assemblies of the same species.
http://www.ncbi.nlm.nih.gov/assembly/help/
Sequence change caused by the cleavage of specific DNA sequences by zinc finger nucleases (ZFNs). ZFN proteins comprise a DNA binding domain linked to the DNA cleavage domain of FokI endonuclease. The DNA binding domain is composed of three Cys2His2 zinc fingers, with each zinc finger contacting three consecutive base pairs of DNA. The specificity of the binding is determined by the sequence of the three-zinc finger DNA binding domain, which recognizes a 9 base pair sequence. Cleavage requires dimerization of FokI. The endonuclease is directed to a target region by a pair of ZFNs which bind to sequences in close proximity, allowing dimerization and promoting cleavage.
mmc46
2016-04-06T10:22:52Z
change induced by zinc finger nuclease-mediated cleavage
origin_of_mutation
zinc finger nuclease
FBcv:0003239
ZFN
Sequence change caused by the cleavage of specific DNA sequences by zinc finger nucleases (ZFNs). ZFN proteins comprise a DNA binding domain linked to the DNA cleavage domain of FokI endonuclease. The DNA binding domain is composed of three Cys2His2 zinc fingers, with each zinc finger contacting three consecutive base pairs of DNA. The specificity of the binding is determined by the sequence of the three-zinc finger DNA binding domain, which recognizes a 9 base pair sequence. Cleavage requires dimerization of FokI. The endonuclease is directed to a target region by a pair of ZFNs which bind to sequences in close proximity, allowing dimerization and promoting cleavage.
PMID:10954606
PMID:12730594
PMID:8577732
mmc46
2016-05-17T15:35:41Z
assay_attribute
FBcv:0003240
expression array
Phenotype that is a defect in sensory perception of light stimulus (GO:0050953). 'sensory perception of light stimulus' is defined as: '$sub_GO:0050953'
phenotypic_class
FBcv:0004000
visual perception defective
Phenotype that is a defect in sensory perception of light stimulus (GO:0050953). 'sensory perception of light stimulus' is defined as: '$sub_GO:0050953'
FBC:MMC
Sequence change caused by a site specific recombination catalyzed by the serine recombinase Bxb1 integrase that recognizes a minimal high-efficiency attPX recognition site of 48 base pairs and a minimal high-efficiency attBX recognition site of 38 base pairs. The attPX and attBX sites share an 8bp common core flanked by imperfect inverted repeats (19bp in attPX and 8bp in attBX). A non-palindromic central dinucleotide (5'-GT) determines the directionality of integration.
temj2
2017-06-12T10:56:07Z
change induced by Bxb1 integrase recombination
origin_of_mutation
FBcv:0005000
Bxb1 integrase
Sequence change caused by a site specific recombination catalyzed by the serine recombinase Bxb1 integrase that recognizes a minimal high-efficiency attPX recognition site of 48 base pairs and a minimal high-efficiency attBX recognition site of 38 base pairs. The attPX and attBX sites share an 8bp common core flanked by imperfect inverted repeats (19bp in attPX and 8bp in attBX). A non-palindromic central dinucleotide (5'-GT) determines the directionality of integration.
PMID:14636570
Term that describes the use of an experimental tool.
temj2
2017-06-28T11:41:27Z
FlyBase miscellaneous CV
FBcv:0005001
experimental tool descriptor
Term that describes the use of an experimental tool.
FBC:GM
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and confers a specific property that facilitates detection of that gene product by an experimental method.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005002
gene product detection tag
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and confers a specific property that facilitates detection of that gene product by an experimental method.
FBC:GM
Sequence that forms all or part of the RNA product encoded by a transgenic locus or modified endogenous locus and confers a specific property that facilitates detection of that RNA product by an experimental method.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005003
RNA detection tag
Sequence that forms all or part of the RNA product encoded by a transgenic locus or modified endogenous locus and confers a specific property that facilitates detection of that RNA product by an experimental method.
FBC:GM
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and confers a specific property that facilitates detection of that protein product by an experimental method.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005004
protein detection tag
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and confers a specific property that facilitates detection of that protein product by an experimental method.
FBC:GM
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and that encodes an enzyme whose activity can be used to detect the presence of that protein product.
temj2
2017-06-28T11:41:27Z
MI:0365
experimental_tool_descriptor
FBcv:0005005
reporter enzyme
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and that encodes an enzyme whose activity can be used to detect the presence of that protein product.
FBC:GM
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and that exhibits the property of fluorescence, that can be used to detect the presence of that protein product. A fluorescent protein emits light following the absorption of radiation, with the wavelength of the emitted light being longer than the excitation wavelength of the absorbed radiation.
temj2
2017-06-28T11:41:27Z
MI:0687
experimental_tool_descriptor
FBcv:0005006
fluorescent protein
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and that exhibits the property of fluorescence, that can be used to detect the presence of that protein product. A fluorescent protein emits light following the absorption of radiation, with the wavelength of the emitted light being longer than the excitation wavelength of the absorbed radiation.
FBC:GM
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 499-519nm.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005007
green fluorescent protein
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 499-519nm.
FBC:GM
http://blog.addgene.org/which-fluorescent-protein-should-i-use
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 424-467nm.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005008
blue fluorescent protein
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 424-467nm.
FBC:GM
http://blog.addgene.org/which-fluorescent-protein-should-i-use
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 474-492nm.
temj2
2017-06-28T11:41:27Z
MI:0733
experimental_tool_descriptor
FBcv:0005009
cyan fluorescent protein
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 474-492nm.
FBC:GM
http://blog.addgene.org/which-fluorescent-protein-should-i-use
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 524-538nm.
temj2
2017-06-28T11:41:27Z
MI:0368
experimental_tool_descriptor
FBcv:0005010
yellow fluorescent protein
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 524-538nm.
FBC:GM
http://blog.addgene.org/which-fluorescent-protein-should-i-use
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 559-572nm.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005011
orange fluorescent protein
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 559-572nm.
FBC:GM
http://blog.addgene.org/which-fluorescent-protein-should-i-use
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 574-610nm.
temj2
2017-06-28T11:41:27Z
MI:0732
experimental_tool_descriptor
FBcv:0005012
red fluorescent protein
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 574-610nm.
FBC:GM
http://blog.addgene.org/which-fluorescent-protein-should-i-use
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 625-659nm.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005013
far-red fluorescent protein
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak within the wavelength range of 625-659nm.
FBC:GM
http://blog.addgene.org/which-fluorescent-protein-should-i-use
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak equal or greater than 670nm.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005014
infra-red fluorescent protein
Protein having well characterized fluorescence excitation and emission spectra, with an emission peak equal or greater than 670nm.
FBC:GM
http://blog.addgene.org/which-fluorescent-protein-should-i-use
A fluorescent protein whose spectral properties are changeable, resulting from a reversible or irreversible change in fluorophore conformation. Changes in fluorophore conformation may occur either as a function of time (in the case of fluorescent timer proteins), or in response to an external trigger such as irradiation with a specific wavelength of light (in the case of photomodulatable fluorescent proteins).
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005015
modulatable fluorescent protein
A fluorescent protein whose spectral properties are changeable, resulting from a reversible or irreversible change in fluorophore conformation. Changes in fluorophore conformation may occur either as a function of time (in the case of fluorescent timer proteins), or in response to an external trigger such as irradiation with a specific wavelength of light (in the case of photomodulatable fluorescent proteins).
FBC:TEMJ
A fluorescent protein whose spectral properties can be modulated by exposure to light of a specific wavelength, triggering a conformational change of the fluorophore and subsequent change in fluorescent state.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005016
photomodulatable fluorescent protein
A fluorescent protein whose spectral properties can be modulated by exposure to light of a specific wavelength, triggering a conformational change of the fluorophore and subsequent change in fluorescent state.
FBC:TEMJ
PMID:20539741
A protein that can be switched from an essentially non-fluorescent state to a fluorescent state by irradiation with a pulse of light of a specific wavelength. This activation is irreversible.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005017
photoactivatable fluorescent protein
A protein that can be switched from an essentially non-fluorescent state to a fluorescent state by irradiation with a pulse of light of a specific wavelength. This activation is irreversible.
FBC:GM
http://www.leica-microsystems.com/science-lab/photoactivatable-photoconvertable-and-photoswitchable-fluorescent-proteins/
A protein that can be converted from one fluorescent state to another fluorescent state (with a changed emission spectrum peak) by irradiation with a pulse of light of a specific wavelength. This conversion is irreversible.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005018
photoconvertible fluorescent protein
A protein that can be converted from one fluorescent state to another fluorescent state (with a changed emission spectrum peak) by irradiation with a pulse of light of a specific wavelength. This conversion is irreversible.
FBC:GM
http://www.leica-microsystems.com/science-lab/photoactivatable-photoconvertable-and-photoswitchable-fluorescent-proteins/
A protein that can be reversibly switched between a non-fluorescent state and a fluorescent state, or between two different fluorescent states. The switch from one state to the other is triggered by irradiation with a pulse of light of a specific wavelength, and the switch back to the original state is triggered with a pulse of light of another specific wavelength.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005019
photoswitchable fluorescent protein
A protein that can be reversibly switched between a non-fluorescent state and a fluorescent state, or between two different fluorescent states. The switch from one state to the other is triggered by irradiation with a pulse of light of a specific wavelength, and the switch back to the original state is triggered with a pulse of light of another specific wavelength.
FBC:GM
FBC:TEMJ
http://www.leica-microsystems.com/science-lab/photoactivatable-photoconvertable-and-photoswitchable-fluorescent-proteins/
A protein that converts from one fluorescent state to another fluorescent state (with a changed emission spectrum peak) over time.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005020
fluorescent timer protein
A protein that converts from one fluorescent state to another fluorescent state (with a changed emission spectrum peak) over time.
FBC:GM
Sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and that encodes an epitope that can be used to detect the presence of the tagged protein product. An epitope (SO:0001018) is defined as 'A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells.'
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005021
epitope tag
Sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and that encodes an epitope that can be used to detect the presence of the tagged protein product. An epitope (SO:0001018) is defined as 'A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells.'
FBC:GM
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged gene product either to a specific subcellular location within the cell or for secretion to the extracellular space.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005022
gene product localization tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged gene product either to a specific subcellular location within the cell or for secretion to the extracellular space.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein either to a specific subcellular location within the cell or for secretion to the extracellular space.
temj2
2017-06-28T11:41:27Z
SO:0001527
experimental_tool_descriptor
FBcv:0005023
protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein either to a specific subcellular location within the cell or for secretion to the extracellular space.
FBC:GM
http://en.wikipedia.org/wiki/Target_peptide
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the nucleus.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005024
nuclear protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the nucleus.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the mitochondrion.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005025
mitochondrial protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the mitochondrion.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the peroxisome.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005026
peroxisomal protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the peroxisome.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the centrosome.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005027
centrosome protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the centrosome.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the microtubule.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005028
microtubule protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the microtubule.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the endoplasmic reticulum.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005029
endoplasmic reticulum protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the endoplasmic reticulum.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the Golgi apparatus.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005030
Golgi protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the Golgi apparatus.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to a cellular membrane. The membrane targeting sequence may be an intrinsic component of the membrane (GO:0031224), having some covalently attached portion, for example part of a peptide sequence or some other covalently attached group such as a GPI anchor, which spans or is embedded in one or both leaflets of the membrane; or may be an extrinsic component of the membrane (GO:0019898), being loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005031
membrane protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to a cellular membrane. The membrane targeting sequence may be an intrinsic component of the membrane (GO:0031224), having some covalently attached portion, for example part of a peptide sequence or some other covalently attached group such as a GPI anchor, which spans or is embedded in one or both leaflets of the membrane; or may be an extrinsic component of the membrane (GO:0019898), being loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
FBC:GM
GOC:dos
GOC:jl
GOC:mah
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the plasma membrane.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005032
plasma membrane protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the plasma membrane.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to a vesicle.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005033
vesicle protein localization tag
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to a vesicle.
FBC:GM
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the secretory pathway. This results in the protein either being secreted or inserted into a cellular membrane, depending on the presence of other specific sequences in the tagged protein. The signal sequence must be fused to the N-terminal end of the tagged protein.
temj2
2017-06-28T11:41:27Z
SO:0000418
experimental_tool_descriptor
FBcv:0005034
signal sequence
A peptide sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which is used to target the tagged protein to the secretory pathway. This results in the protein either being secreted or inserted into a cellular membrane, depending on the presence of other specific sequences in the tagged protein. The signal sequence must be fused to the N-terminal end of the tagged protein.
FBC:GM
http://en.wikipedia.org/wiki/Signal_peptide
A peptide sequence used to target a tagged protein for export from the nucleus to the cytoplasm.
temj2
2017-06-28T11:41:27Z
SO:0001531
NES
experimental_tool_descriptor
FBcv:0005035
nuclear export signal
A peptide sequence used to target a tagged protein for export from the nucleus to the cytoplasm.
FBC:GM
SO:0001531
http://en.wikipedia.org/wiki/Nuclear_export_signal
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and confers a specific, novel property that facilitates purification of the gene product and/or any associated macromolecular complex by an experimental method.
temj2
2017-06-28T11:41:27Z
isolation tag
experimental_tool_descriptor
FBcv:0005036
purification tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and confers a specific, novel property that facilitates purification of the gene product and/or any associated macromolecular complex by an experimental method.
FBC:GM
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which is used to regulate the activity of the tagged gene product.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005037
gene product activity regulation tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which is used to regulate the activity of the tagged gene product.
FBC:GM
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the activity of the tagged gene product being regulated in response to a particular stimulus.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005038
conditional activity regulation tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the activity of the tagged gene product being regulated in response to a particular stimulus.
FBC:GM
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the activity of the tagged gene product being regulated in response to irradiation with a pulse of light.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005039
light-dependent activity regulation tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the activity of the tagged gene product being regulated in response to irradiation with a pulse of light.
FBC:GM
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the tagged gene product being regulated by binding to a small molecule, such as an ion or ligand.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005040
small molecule-dependent activity regulation tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the tagged gene product being regulated by binding to a small molecule, such as an ion or ligand.
FBC:GM
Sequence that forms part of the protein encoded by a transgenic locus or modified endogenous locus and which allows a protein to be inactivated by the chromophore-assisted light inactivation (CALI) technique. The tag consists of a peptide sequence that specifically binds a membrane-permeable, chromophore-containing molecule. When activated using a pulse of high-intensity light that is absorbed by the chromophore but not by cellular components, the membrane-permeable molecule generates short-lived reactive oxygen species which inactivate the tagged protein to which the molecule is bound via the chromophore-assisted light inactivation tag.
temj2
2017-06-28T11:41:27Z
CALI tag
experimental_tool_descriptor
FBcv:0005041
chromophore-assisted light inactivation tag
Sequence that forms part of the protein encoded by a transgenic locus or modified endogenous locus and which allows a protein to be inactivated by the chromophore-assisted light inactivation (CALI) technique. The tag consists of a peptide sequence that specifically binds a membrane-permeable, chromophore-containing molecule. When activated using a pulse of high-intensity light that is absorbed by the chromophore but not by cellular components, the membrane-permeable molecule generates short-lived reactive oxygen species which inactivate the tagged protein to which the molecule is bound via the chromophore-assisted light inactivation tag.
FBC:GM
PMID:14625562
PMID:16605242
PMID:21226520
PMID:3399501
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the tagged gene product being targeted for degradation by a specific process.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005042
gene product degradation tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the tagged gene product being targeted for degradation by a specific process.
FBC:GM
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the tagged gene product being targeted for degradation by a specific process that is dependent on the cell cycle.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005043
cell-cycle regulated gene product degradation tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which results in the tagged gene product being targeted for degradation by a specific process that is dependent on the cell cycle.
FBC:GM
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of a biologically relevant property that is not part of or directly encoded by the genome, for example pH, redox state, membrane potential, a change in concentration of a particular molecule. For experimental tools that are used to detect a gene product directly encoded by the genome, see instead 'gene product detection tag'.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005044
genetically encoded sensor
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of a biologically relevant property that is not part of or directly encoded by the genome, for example pH, redox state, membrane potential, a change in concentration of a particular molecule. For experimental tools that are used to detect a gene product directly encoded by the genome, see instead 'gene product detection tag'.
FBC:GM
PMID:20664080
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and confers a specific property that facilitates detection of a molecule that is not part of or directly encoded by the genome.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005045
small molecule sensor
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and confers a specific property that facilitates detection of a molecule that is not part of or directly encoded by the genome.
FBC:GM
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of calcium ion concentration.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005046
calcium ion sensor
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of calcium ion concentration.
FBC:GM
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of pH.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005047
pH sensor
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of pH.
FBC:GM
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of voltage.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005048
voltage sensor
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of voltage.
FBC:GM
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of the redox state of a cell/tissue.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005049
redox state sensor
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that is used to provide a readout of the redox state of a cell/tissue.
FBC:GM
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that shows a change in a particular property in response to a change in the mechanical force the gene product is subjected to. A gene product tagged with such a sequence can thus be used to detect/respond to this change.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005050
mechanical force sensor
Sequence that forms all or part of the gene product encoded by a transgenic locus or modified endogenous locus and that shows a change in a particular property in response to a change in the mechanical force the gene product is subjected to. A gene product tagged with such a sequence can thus be used to detect/respond to this change.
FBC:GM
Component that forms part of a 'split system'. A split system component corresponds to a non-functional fragment of a functional experimental tool that would normally be encoded by a single gene product. When combined with another appropriate split system component in vivo, a functional experimental tool is produced. The fragments of a split system can be brought together in vivo in a number of different ways; for example, by fusing fragments to peptides that physically interact in vivo.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005051
split system component
Component that forms part of a 'split system'. A split system component corresponds to a non-functional fragment of a functional experimental tool that would normally be encoded by a single gene product. When combined with another appropriate split system component in vivo, a functional experimental tool is produced. The fragments of a split system can be brought together in vivo in a number of different ways; for example, by fusing fragments to peptides that physically interact in vivo.
FBC:GM
Non-fluorescent fragment of a fluorescent protein. A functional fluorophore can be reconstituted if a split fluorescent protein fragment is expressed with a complementary split fluorescent protein fragment and the fragments are brought together in vivo, permitting the study of biological interactions. Protein-protein interactions can be studied using the bimolecular fluorescence complementation (BiFC) technique, where a fluorescent protein is reconstituted if the two complementary split fluorescent protein fragments are fused to interacting proteins or protein domains that bring the split halves together into the same macromolecular complex. Associations between closely apposed cells can be studied if the two complementary split fluorescent protein fragments are tethered to the surface of these cells, for example to study connectivity in the nervous system using the GFP Reconstitution Across Synaptic Partners (GRASP) technique.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005052
split fluorescent protein
Non-fluorescent fragment of a fluorescent protein. A functional fluorophore can be reconstituted if a split fluorescent protein fragment is expressed with a complementary split fluorescent protein fragment and the fragments are brought together in vivo, permitting the study of biological interactions. Protein-protein interactions can be studied using the bimolecular fluorescence complementation (BiFC) technique, where a fluorescent protein is reconstituted if the two complementary split fluorescent protein fragments are fused to interacting proteins or protein domains that bring the split halves together into the same macromolecular complex. Associations between closely apposed cells can be studied if the two complementary split fluorescent protein fragments are tethered to the surface of these cells, for example to study connectivity in the nervous system using the GFP Reconstitution Across Synaptic Partners (GRASP) technique.
FBC:GM
PMID:11983170
PMID:18255029
Catalytically inactive fragment of an enzyme. A functional enzyme can be reconstituted when complementary split enzyme fragments are brought together in vivo by fusing the fragments to peptides that physically interact, permitting the study of protein-protein interactions.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005053
split reporter enzyme
Catalytically inactive fragment of an enzyme. A functional enzyme can be reconstituted when complementary split enzyme fragments are brought together in vivo by fusing the fragments to peptides that physically interact, permitting the study of protein-protein interactions.
FBC:GM
PMID:9237989
Sequence encoding a site-specific DNA-binding domain fused to a heterodimerization domain, e.g. a leucine zipper. A functional transcriptional driver can be reconstituted if this split system component is brought together in vivo with a split system component that encodes a transcription activation domain fused to the complementary heterodimerization domain.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005054
split driver - DNA-binding fragment
Sequence encoding a site-specific DNA-binding domain fused to a heterodimerization domain, e.g. a leucine zipper. A functional transcriptional driver can be reconstituted if this split system component is brought together in vivo with a split system component that encodes a transcription activation domain fused to the complementary heterodimerization domain.
FBC:GM
FlyBase:FBrf0193617
Sequence encoding a transcription activation domain fused to a heterodimerization domain. A functional transcription driver can be reconstituted if this split system component is brought together in vivo with a split system component that encodes a DNA-binding domain fused to the complementary heterodimerization domain.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005055
split driver - transcription activation fragment
Sequence encoding a transcription activation domain fused to a heterodimerization domain. A functional transcription driver can be reconstituted if this split system component is brought together in vivo with a split system component that encodes a DNA-binding domain fused to the complementary heterodimerization domain.
FBC:GM
FlyBase:FBrf0193617
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which allows the tagged gene product to be cleaved (broken into smaller molecules by the rupture of a covalent bond) by a specific process.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005056
gene product cleavage tag
Sequence that forms part of the gene product encoded by a transgenic locus or modified endogenous locus and which allows the tagged gene product to be cleaved (broken into smaller molecules by the rupture of a covalent bond) by a specific process.
FBC:GM
Sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which allows the tagged protein product to be cleaved (broken into smaller molecules by the rupture of a covalent bond) by a specific process. Examples of protein cleavage tags include sequences recognized and cleaved by proteases such as the human rhinovirus (HRV) 3C protease (often produced with the tradename PreScission Protease) and the tobacco etch virus (TEV) protease. Protein product cleavage can be used for a number of different purposes, including release of a protein after purification, or removal of a detection tag to assess that the tag does not interfere with protein function.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005057
protein cleavage tag
Sequence that forms part of the protein product encoded by a transgenic locus or modified endogenous locus and which allows the tagged protein product to be cleaved (broken into smaller molecules by the rupture of a covalent bond) by a specific process. Examples of protein cleavage tags include sequences recognized and cleaved by proteases such as the human rhinovirus (HRV) 3C protease (often produced with the tradename PreScission Protease) and the tobacco etch virus (TEV) protease. Protein product cleavage can be used for a number of different purposes, including release of a protein after purification, or removal of a detection tag to assess that the tag does not interfere with protein function.
FBC:GM
FBC:TEMJ
Component that forms part of a binary expression system. This system requires a transactivator ('driver') that binds to a specific DNA sequence ('regulatory region' or 'effector'). A driver encoded by one transgenic locus or modified endogenous locus is used to drive expression of a downstream 'responder' or 'reporter' encoded by another transgenic locus or modified endogenous locus, by fusing the regulatory region sequence to which the driver binds upstream of the responder sequence. The temporal and spatial expression pattern of the responder thus depends on the regulatory elements used to drive expression of the driver. In addition, a specific repressor protein may be available which prevents the transactivator from driving expression, allowing further refinement of the expression pattern of the responder.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005058
binary expression system component
Component that forms part of a binary expression system. This system requires a transactivator ('driver') that binds to a specific DNA sequence ('regulatory region' or 'effector'). A driver encoded by one transgenic locus or modified endogenous locus is used to drive expression of a downstream 'responder' or 'reporter' encoded by another transgenic locus or modified endogenous locus, by fusing the regulatory region sequence to which the driver binds upstream of the responder sequence. The temporal and spatial expression pattern of the responder thus depends on the regulatory elements used to drive expression of the driver. In addition, a specific repressor protein may be available which prevents the transactivator from driving expression, allowing further refinement of the expression pattern of the responder.
FBC:GM
FlyBase:FBrf0216478
Transactivator ('driver') that is encoded by a transgenic locus or modified endogenous locus and which forms part of a binary expression system. This system requires a transactivator ('driver') that binds to a specific DNA sequence ('regulatory region' or 'effector'). A driver encoded by one transgenic locus or modified endogenous locus is used to drive expression of a downstream 'responder' or 'reporter' encoded by another transgenic locus or modified endogenous locus, by fusing the regulatory region sequence to which the driver binds upstream of the responder sequence. The temporal and spatial expression pattern of the responder thus depends on the regulatory elements used to drive expression of the driver. In addition, a specific repressor protein may be available which prevents the transactivator from driving expression, allowing further refinement of the expression pattern of the responder.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005059
binary expression system - driver
Transactivator ('driver') that is encoded by a transgenic locus or modified endogenous locus and which forms part of a binary expression system. This system requires a transactivator ('driver') that binds to a specific DNA sequence ('regulatory region' or 'effector'). A driver encoded by one transgenic locus or modified endogenous locus is used to drive expression of a downstream 'responder' or 'reporter' encoded by another transgenic locus or modified endogenous locus, by fusing the regulatory region sequence to which the driver binds upstream of the responder sequence. The temporal and spatial expression pattern of the responder thus depends on the regulatory elements used to drive expression of the driver. In addition, a specific repressor protein may be available which prevents the transactivator from driving expression, allowing further refinement of the expression pattern of the responder.
FBC:GM
FlyBase:FBrf0216478
Specific DNA sequence that is used as the effector in a binary expression system. This system requires a transactivator ('driver') that binds to a specific DNA sequence ('regulatory region' or 'effector'). A driver encoded by one transgenic locus or modified endogenous locus is used to drive expression of a downstream 'responder' or 'reporter' encoded by another transgenic locus or modified endogenous locus, by fusing the regulatory region sequence to which the driver binds upstream of the responder sequence. The temporal and spatial expression pattern of the responder thus depends on the regulatory elements used to drive expression of the driver. In addition, a specific repressor protein may be available which prevents the transactivator from driving expression, allowing further refinement of the expression pattern of the responder.
temj2
2017-06-28T11:41:27Z
binary expression system - effector
experimental_tool_descriptor
FBcv:0005060
binary expression system - regulatory region
Specific DNA sequence that is used as the effector in a binary expression system. This system requires a transactivator ('driver') that binds to a specific DNA sequence ('regulatory region' or 'effector'). A driver encoded by one transgenic locus or modified endogenous locus is used to drive expression of a downstream 'responder' or 'reporter' encoded by another transgenic locus or modified endogenous locus, by fusing the regulatory region sequence to which the driver binds upstream of the responder sequence. The temporal and spatial expression pattern of the responder thus depends on the regulatory elements used to drive expression of the driver. In addition, a specific repressor protein may be available which prevents the transactivator from driving expression, allowing further refinement of the expression pattern of the responder.
FBC:GM
FlyBase:FBrf0216478
Repressor that can be used to regulate expression in a binary expression system. This system requires a transactivator ('driver') that binds to a specific DNA sequence ('regulatory region' or 'effector'). A driver encoded by one transgenic locus or modified endogenous locus is used to drive expression of a downstream 'responder' or 'reporter' encoded by another transgenic locus or modified endogenous locus, by fusing the regulatory region sequence to which the driver binds upstream of the responder sequence. The temporal and spatial expression pattern of the responder thus depends on the regulatory elements used to drive expression of the driver. In addition, a specific repressor protein may be available which prevents the transactivator from driving expression, allowing further refinement of the expression pattern of the responder.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005061
binary expression system - repressor
Repressor that can be used to regulate expression in a binary expression system. This system requires a transactivator ('driver') that binds to a specific DNA sequence ('regulatory region' or 'effector'). A driver encoded by one transgenic locus or modified endogenous locus is used to drive expression of a downstream 'responder' or 'reporter' encoded by another transgenic locus or modified endogenous locus, by fusing the regulatory region sequence to which the driver binds upstream of the responder sequence. The temporal and spatial expression pattern of the responder thus depends on the regulatory elements used to drive expression of the driver. In addition, a specific repressor protein may be available which prevents the transactivator from driving expression, allowing further refinement of the expression pattern of the responder.
FBC:GM
FlyBase:FBrf0216478
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and that has the property of 'site-specific recombinase activity'. 'site-specific recombinase activity' (GO:0009009) is defined as 'Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences.'
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005062
site-specific recombinase
Sequence that forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and that has the property of 'site-specific recombinase activity'. 'site-specific recombinase activity' (GO:0009009) is defined as 'Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences.'
FBC:GM
Sequence that is a target for a site-specific recombinase. Forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and that has the property of 'site-specific recombinase activity'. 'site-specific recombinase activity' (GO:0009009) is defined as 'Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences.'.
temj2
2017-06-28T11:41:27Z
experimental_tool_descriptor
FBcv:0005063
site-specific recombination target region
Sequence that is a target for a site-specific recombinase. Forms all or part of the protein product encoded by a transgenic locus or modified endogenous locus and that has the property of 'site-specific recombinase activity'. 'site-specific recombinase activity' (GO:0009009) is defined as 'Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences.'.
FBC:GM
Phenotype that is a defect in copulation (GO:0007620). 'copulation' is defined as: '$sub_GO:0007620'
phenotypic_class
FBcv:0006000
copulation defective
Phenotype that is a defect in copulation (GO:0007620). 'copulation' is defined as: '$sub_GO:0007620'
FBC:TEMJ
Phenotype that is an increase in the number of gametes produced.
phenotypic_class
FBcv:0006001
increased fecundity
Phenotype that is an increase in the number of gametes produced.
FBC:TEMJ
Phenotype that is a decrease in the number of gametes produced.
phenotypic_class
FBcv:0006002
decreased fecundity
Phenotype that is a decrease in the number of gametes produced.
FBC:TEMJ
Phenotype that is a defect in oviposition (GO:0007620). 'oviposition' is defined as: '$sub_GO:0018991'.
phenotypic_class
FBcv:0006004
This term should only be used to report defects specifically in oviposition, as opposed to an overall loss of fertility. If a difference in "oviposition rate" is measured by authors as a proxy for sterility/fertility, it would be better to use the terms "sterile", "semi-sterile", or "semi-fertile", as appropriate.
oviposition defective
Phenotype that is a defect in oviposition (GO:0007620). 'oviposition' is defined as: '$sub_GO:0018991'.
FBC:TEMJ
A phenotype that is an increased occurrence of cell division (GO:0051301). 'cell division' is defined as '$sub_GO:0051301'.
phenotypic_class
FBcv:0006005
fbcvsubset_mgiribbons
increased occurrence of cell division
A phenotype that is an increased occurrence of cell division (GO:0051301). 'cell division' is defined as '$sub_GO:0051301'.
FBC:TEMJ
A phenotype that is a decreased occurrence of cell division (GO:0051301). 'cell division' is defined as '$sub_GO:0051301'.
phenotypic_class
FBcv:0006006
fbcvsubset_mgiribbons
decreased occurrence of cell division
A phenotype that is a decreased occurrence of cell division (GO:0051301). 'cell division' is defined as '$sub_GO:0051301'.
FBC:TEMJ
FlyBase miscellaneous CV
FBcv:0010000
Consider - FBsv:0000002.
living stock
true
FlyBase miscellaneous CV
FBcv:0010001
Consider - FBsv:0000003.
molecular extract
true
FlyBase miscellaneous CV
FBcv:0010002
Consider - FBsv:0000005.
preserved specimen
true
FlyBase miscellaneous CV
FBcv:0010003
E cytotype stock
true
FlyBase miscellaneous CV
FBcv:0010004
M cytotype stock
true
FlyBase miscellaneous CV
FBcv:0010005
Consider - FBsv:0000004.
genomic DNA
true
FlyBase miscellaneous CV
FBcv:0010006
Consider - FBsv:0000007.
ethanol-preserved specimen
true
FlyBase miscellaneous CV
FBcv:0010007
pinned specimen
true
FlyBase miscellaneous CV
FBcv:0010009
Consider - FBsv:0001010.
fluorescent balancer
true
FlyBase miscellaneous CV
FBcv:0010010
Consider - FBsv:0001011.
lacZ balancer
true
FlyBase miscellaneous CV
FBcv:0010011
laboratory wild-type stock
true
FlyBase miscellaneous CV
FBcv:0010012
Consider - FBsv:0000100.
collection
true
FlyBase miscellaneous CV
FBcv:0010013
Consider - FBsv:0000101.
stock center collection
true
FlyBase miscellaneous CV
FBcv:0010014
Consider - FBsv:0000102.
laboratory collection
true
FlyBase miscellaneous CV
FBcv:0010015
Saxton laboratory
true
FlyBase miscellaneous CV
FBcv:0010016
Consider - FBsv:0000109.
Garcia-Bellido laboratory
true
FlyBase miscellaneous CV
FBcv:0010017
Consider - FBsv:0000108.
Nusslein-Volhard laboratory
true
FlyBase miscellaneous CV
FBcv:0010018
Consider - FBsv:0000110.
Carpenter laboratory
true
FlyBase miscellaneous CV
Harvard Medical School Exelixis Drosophila Collection
FBcv:0010019
Artavanis laboratory
true
FlyBase miscellaneous CV
Artavanis-Tsakonas laboratory
FBcv:0010020
Consider - FBsv:0000105.
Exelixis Drosophila Stock Collection at Harvard Medical School
true
Bloomington
FlyBase miscellaneous CV
BDSC
BSC
FBcv:0010021
Consider - FBsv:0000103.
Bloomington Drosophila Stock Center
true
species stock center
FlyBase miscellaneous CV
Drosophila species stock center
Tucson
FBcv:0010022
Consider - FBsv:0000106.
San Diego Drosophila Species Stock Center
true
FlyBase miscellaneous CV
Szeged
FBcv:0010023
Szeged Drosophila Stock Centre
true
FlyBase miscellaneous CV
DGRC
Kyoto
Kyoto stock center
FBcv:0010024
Consider - FBsv:0000104.
Drosophila Genetic Resource Center
true
A temporal subdivision of a developmental process.
djs93
2009-10-01T05:56:56Z
FBdv:00007010
FlyBase_development_CV
FBdv:00005259
developmental stage
A temporal subdivision of a developmental process.
FBC:DOS
The stage of the Drosophila life-cycle from fertilisation to hatching.
FlyBase_development_CV
FBdv:00005289
Temporal ordering number - 20.
embryonic stage
The stage of the Drosophila life-cycle from fertilisation to hatching.
FBC:DOS
The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
FlyBase_development_CV
FBdv:00005336
Temporal ordering number - 400.
larval stage
The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
FBC:DOS
The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
L1
first instar larva
FlyBase_development_CV
FBdv:00005337
Temporal ordering number - 410.
first instar larval stage
The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
FlyBase:FBrf0007733
The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
L2
second instar larva
FlyBase_development_CV
FBdv:00005338
Temporal ordering number - 420.
second instar larval stage
The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
FlyBase:FBrf0007733
The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
L3
FlyBase_development_CV
third instar larva
FBdv:00005339
Temporal ordering number - 430.
third instar larval stage
The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
FlyBase:FBrf0007733
The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
FlyBase_development_CV
FBdv:00005342
Temporal ordering number - 500.
prepupal stage
The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
FlyBase:FBrf0036849
FlyBase:FBrf0048355
The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
phanerocephalic pupa
FlyBase_development_CV
FBdv:00005349
Temporal ordering number - 570. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for Cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head and expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.
pupal stage
The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
FlyBase:FBrf0036849
FlyBase:FBrf0048355
phanerocephalic pupa
FlyBase:FBrf0036849
The stage of the Drosophila life-cycle from eclosion to death.
FlyBase_development_CV
FBdv:00005369
Temporal ordering number - 770.
adult stage
The stage of the Drosophila life-cycle from eclosion to death.
FBC:DOS
Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
FBdv:00005373
FlyBase_development_CV
adult stage I
FBdv:00005370
Temporal ordering number - 785. The time at which eclosed flies settle down for wing expansion can vary greatly. If they fail to find a suitable site then expansion can be delayed by several hours.
adult stage A1
Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
FlyBase:FBrf0049147
Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
FBdv:00005374
FlyBase_development_CV
adult stage II
FBdv:00005371
Temporal ordering number - 790.
adult stage A2
Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
FlyBase:FBrf0049147
The developing adult after pupal-adult apolysis , i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
FlyBase_development_CV
FBdv:00006011
Temporal ordering number - 625.
pharate adult stage
The developing adult after pupal-adult apolysis , i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
FlyBase:FBrf0036849
FlyBase:FBrf0048355
FlyBase:FBrf0049147
Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
FBdv:00005375
FlyBase_development_CV
adult stage III
FBdv:00006012
Temporal ordering number - 800.
adult stage A3
Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
FlyBase:FBrf0049147
The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
david
2008-06-05T04:51:40Z
metamorphosis
FlyBase_development_CV
pupal stage
FBdv:00007001
Temporal ordering number - 490. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for Cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head an expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.
P-stage
The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
FBC:DOS
A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilisation; hatching; pupal ecdysis; eclosion.
djs93
2009-10-01T05:59:22Z
FlyBase_development_CV
life cycle stage
FBdv:00007012
life stage
A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilisation; hatching; pupal ecdysis; eclosion.
FBC:DOS
The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
djs93
2013-01-08T20:06:59Z
FlyBase_development_CV
FBdv:00007025
Temporal ordering number - 782.
immature adult stage
The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
FBC:DOS
Life stage from the end of adult stage A3, when tanning is complete, to death.
djs93
2013-01-10T13:03:54Z
FlyBase_development_CV
FBdv:00007026
mature adult stage
Life stage from the end of adult stage A3, when tanning is complete, to death.
FBC:DOS
The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
GO:0019952
GO:0050876
Wikipedia:Reproduction
reproductive physiological process
biological_process
GO:0000003
reproduction
The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
GOC:go_curators
GOC:isa_complete
GOC:jl
ISBN:0198506732
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
GO:0007067
Reactome:REACT_100451
Reactome:REACT_104035
Reactome:REACT_104195
Reactome:REACT_105856
Reactome:REACT_108233
Reactome:REACT_152
Reactome:REACT_28464
Reactome:REACT_28953
Reactome:REACT_33388
Reactome:REACT_53493
Reactome:REACT_79085
Reactome:REACT_84794
Reactome:REACT_85137
Reactome:REACT_85950
Reactome:REACT_90332
Reactome:REACT_90846
Reactome:REACT_96281
Reactome:REACT_97744
Reactome:REACT_98208
Wikipedia:Mitosis
biological_process
mitosis
GO:0000278
mitotic cell cycle
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
GOC:mah
ISBN:0815316194
Reactome:69278
Reactome:REACT_100451
Cell Cycle, Mitotic, Taeniopygia guttata
Reactome:REACT_104035
Cell Cycle, Mitotic, Sus scrofa
Reactome:REACT_104195
Cell Cycle, Mitotic, Canis familiaris
Reactome:REACT_105856
Cell Cycle, Mitotic, Danio rerio
Reactome:REACT_108233
Cell Cycle, Mitotic, Saccharomyces cerevisiae
Reactome:REACT_152
Cell Cycle, Mitotic, Homo sapiens
Reactome:REACT_28464
Cell Cycle, Mitotic, Xenopus tropicalis
Reactome:REACT_28953
Cell Cycle, Mitotic, Bos taurus
Reactome:REACT_33388
Cell Cycle, Mitotic, Rattus norvegicus
Reactome:REACT_53493
Cell Cycle, Mitotic, Plasmodium falciparum
Reactome:REACT_79085
Cell Cycle, Mitotic, Schizosaccharomyces pombe
Reactome:REACT_84794
Cell Cycle, Mitotic, Caenorhabditis elegans
Reactome:REACT_85137
Cell Cycle, Mitotic, Gallus gallus
Reactome:REACT_85950
Cell Cycle, Mitotic, Arabidopsis thaliana
Reactome:REACT_90332
Cell Cycle, Mitotic, Mus musculus
Reactome:REACT_90846
Cell Cycle, Mitotic, Oryza sativa
Reactome:REACT_96281
Cell Cycle, Mitotic, Drosophila melanogaster
Reactome:REACT_97744
Cell Cycle, Mitotic, Dictyostelium discoideum
Reactome:REACT_98208
Cell Cycle, Mitotic, Mycobacterium tuberculosis
The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.
GO:0007104
GO:0016288
GO:0033205
Reactome:REACT_101918
Reactome:REACT_108805
Reactome:REACT_1932
Reactome:REACT_30667
Reactome:REACT_32636
Reactome:REACT_78494
Reactome:REACT_84722
Reactome:REACT_87726
Reactome:REACT_92849
Reactome:REACT_93374
Reactome:REACT_94382
Reactome:REACT_98952
Reactome:REACT_99118
Wikipedia:Cytokinesis
cell cycle cytokinesis
cytokinesis involved in cell cycle
biological_process
GO:0000910
Note that when annotating eukaryotic species, mitotic or meiotic cytokinesis should always be specified for manual annotation and for prokaryotic species use 'FtsZ-dependent cytokinesis ; GO:0043093' or Cdv-dependent cytokinesis ; GO:0061639. Also, note that cytokinesis does not necessarily result in physical separation and detachment of the two daughter cells from each other.
cytokinesis
The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.
GOC:mtg_cell_cycle
Reactome:REACT_101918
Mitotic Telophase /Cytokinesis, Mus musculus
Reactome:REACT_108805
Mitotic Telophase /Cytokinesis, Dictyostelium discoideum
Reactome:REACT_1932
Mitotic Telophase /Cytokinesis, Homo sapiens
Reactome:REACT_30667
Mitotic Telophase /Cytokinesis, Schizosaccharomyces pombe
Reactome:REACT_32636
Mitotic Telophase /Cytokinesis, Bos taurus
Reactome:REACT_78494
Mitotic Telophase /Cytokinesis, Danio rerio
Reactome:REACT_84722
Mitotic Telophase /Cytokinesis, Gallus gallus
Reactome:REACT_87726
Mitotic Telophase /Cytokinesis, Xenopus tropicalis
Reactome:REACT_92849
Mitotic Telophase /Cytokinesis, Taeniopygia guttata
Reactome:REACT_93374
Mitotic Telophase /Cytokinesis, Canis familiaris
Reactome:REACT_94382
Mitotic Telophase /Cytokinesis, Drosophila melanogaster
Reactome:REACT_98952
Mitotic Telophase /Cytokinesis, Rattus norvegicus
Reactome:REACT_99118
Mitotic Telophase /Cytokinesis, Caenorhabditis elegans
cytokinesis involved in cell cycle
GOC:dph
GOC:tb
Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates.
establishment of planar cell polarity
biological_process
GO:0001736
establishment of planar polarity
Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates.
GOC:dph
The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis.
epithelial polarization
biological_process
GO:0001738
morphogenesis of a polarized epithelium
The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis.
GOC:dph
epithelial polarization
GOC:dph
The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
epithelium morphogenesis
biological_process
GO:0002009
morphogenesis of an epithelium
The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
GOC:dph
GOC:jl
GOC:tb
ISBN:0198506732
Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
Wikipedia:Immune_system
biological_process
GO:0002376
Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). This term was added by GO_REF:0000022.
immune system process
Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
GOC:add
GOC:mtg_15nov05
GO_REF:0000022
The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.
biological_process
pattern formation
GO:0003002
regionalization
The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.
GOC:dph
GOC:isa_complete
pattern formation
GOC:dph
A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring.
puberty
biological_process
reproductive developmental process
GO:0003006
developmental process involved in reproduction
A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring.
GOC:dph
GOC:isa_complete
puberty
GOC:dph
reproductive developmental process
GOC:dph
GOC:tb
A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective.
organ system process
biological_process
GO:0003008
system process
A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective.
GOC:mtg_cardio
The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
GO:0008372
NIF_Subcellular:sao-1337158144
NIF_Subcellular:sao1337158144
cell or subcellular entity
cellular component
cellular_component
subcellular entity
GO:0005575
Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
cellular_component
The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
GOC:go_curators
NIF_Subcellular:sao-1337158144
subcellular entity
NIF_Subcellular:nlx_subcell_100315
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
NIF_Subcellular:sao1813327414
Wikipedia:Cell_(biology)
cellular_component
GO:0005623
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
GOC:go_curators
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0055134
cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
biological_process
nucleobase, nucleoside and nucleotide metabolic process
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GO:0006139
nucleobase-containing compound metabolic process
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GOC:ai
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GOC:dph
GOC:tb
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO:0055132
DNA metabolism
cellular DNA metabolism
biological_process
GO:0006259
DNA metabolic process
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
ISBN:0198506732
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Reactome:REACT_102034
Reactome:REACT_106650
Reactome:REACT_107446
Reactome:REACT_107692
Reactome:REACT_107752
Reactome:REACT_108864
Reactome:REACT_108881
Reactome:REACT_108903
Reactome:REACT_109956
Reactome:REACT_115642
Reactome:REACT_115836
Reactome:REACT_127
Reactome:REACT_216
Reactome:REACT_29531
Reactome:REACT_29636
Reactome:REACT_78051
Reactome:REACT_82907
Reactome:REACT_83608
Reactome:REACT_83660
Reactome:REACT_84835
Reactome:REACT_85522
Reactome:REACT_86513
Reactome:REACT_86902
Reactome:REACT_88201
Reactome:REACT_88946
Reactome:REACT_89524
Reactome:REACT_90385
Reactome:REACT_90952
Reactome:REACT_91094
Reactome:REACT_91330
Reactome:REACT_91442
Reactome:REACT_91576
Reactome:REACT_92707
Reactome:REACT_93704
Reactome:REACT_94204
Reactome:REACT_94769
Reactome:REACT_95050
Reactome:REACT_95158
Reactome:REACT_96052
Reactome:REACT_96452
Reactome:REACT_99277
Wikipedia:DNA_repair
biological_process
GO:0006281
DNA repair
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
PMID:11563486
Reactome:REACT_102034
DNA Repair, Staphylococcus aureus N315
Reactome:REACT_106650
DNA Damage Reversal, Taeniopygia guttata
Reactome:REACT_107446
DNA Repair, Arabidopsis thaliana
Reactome:REACT_107692
DNA Damage Reversal, Gallus gallus
Reactome:REACT_107752
DNA Repair, Plasmodium falciparum
Reactome:REACT_108864
DNA Damage Reversal, Rattus norvegicus
Reactome:REACT_108881
DNA Damage Reversal, Bos taurus
Reactome:REACT_108903
DNA Repair, Xenopus tropicalis
Reactome:REACT_109956
DNA Repair, Gallus gallus
Reactome:REACT_115642
DNA repair, Gallus gallus
Reactome:REACT_115836
Fanconi Anemia Pathway in DNA repair, Gallus gallus
Reactome:REACT_127
DNA Damage Reversal, Homo sapiens
Reactome:REACT_216
DNA Repair, Homo sapiens
Reactome:REACT_29531
DNA Damage Reversal, Saccharomyces cerevisiae
Reactome:REACT_29636
DNA Damage Reversal, Staphylococcus aureus N315
Reactome:REACT_78051
DNA Damage Reversal, Canis familiaris
Reactome:REACT_82907
DNA Repair, Oryza sativa
Reactome:REACT_83608
DNA Damage Reversal, Caenorhabditis elegans
Reactome:REACT_83660
DNA Repair, Escherichia coli
Reactome:REACT_84835
DNA Damage Reversal, Dictyostelium discoideum
Reactome:REACT_85522
DNA Repair, Mus musculus
Reactome:REACT_86513
DNA Repair, Mycobacterium tuberculosis
Reactome:REACT_86902
DNA Repair, Danio rerio
Reactome:REACT_88201
DNA Repair, Drosophila melanogaster
Reactome:REACT_88946
DNA Damage Reversal, Mycobacterium tuberculosis
Reactome:REACT_89524
DNA Damage Reversal, Drosophila melanogaster
Reactome:REACT_90385
DNA Repair, Canis familiaris
Reactome:REACT_90952
DNA Damage Reversal, Arabidopsis thaliana
Reactome:REACT_91094
DNA Repair, Rattus norvegicus
Reactome:REACT_91330
DNA Repair, Bos taurus
Reactome:REACT_91442
DNA Repair, Caenorhabditis elegans
Reactome:REACT_91576
DNA Damage Reversal, Oryza sativa
Reactome:REACT_92707
DNA Repair, Taeniopygia guttata
Reactome:REACT_93704
DNA Repair, Saccharomyces cerevisiae
Reactome:REACT_94204
DNA Repair, Sus scrofa
Reactome:REACT_94769
DNA Repair, Schizosaccharomyces pombe
Reactome:REACT_95050
DNA Damage Reversal, Sus scrofa
Reactome:REACT_95158
DNA Damage Reversal, Xenopus tropicalis
Reactome:REACT_96052
DNA Repair, Dictyostelium discoideum
Reactome:REACT_96452
DNA Damage Reversal, Danio rerio
Reactome:REACT_99277
DNA Damage Reversal, Mus musculus
The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
aromatic compound metabolism
aromatic hydrocarbon metabolic process
aromatic hydrocarbon metabolism
biological_process
GO:0006725
cellular aromatic compound metabolic process
The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
GOC:ai
ISBN:0198506732
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
nitrogen compound metabolism
biological_process
GO:0006807
nitrogen compound metabolic process
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
CHEBI:51143
GOC:go_curators
GOC:jl
ISBN:0198506732
The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
GO:0015457
GO:0015460
small molecule transport
solute:solute exchange
biological_process
auxiliary transport protein activity
transport accessory protein activity
GO:0006810
transport
The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
GOC:dos
GOC:dph
GOC:jl
GOC:mah
auxiliary transport protein activity
GOC:mah
transport accessory protein activity
GOC:mah
A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell.
GO:0016194
GO:0016195
Wikipedia:Exocytosis
vesicle exocytosis
biological_process
nonselective vesicle exocytosis
GO:0006887
exocytosis
A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell.
GOC:mah
ISBN:0716731363
PMID:22323285
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
GO:0016193
GO:0016196
Wikipedia:Endocytosis
plasma membrane invagination
vesicle endocytosis
biological_process
nonselective vesicle endocytosis
GO:0006897
endocytosis
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
GOC:mah
ISBN:0198506732
ISBN:0716731363
The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
cellular component motion
cellular component movement
biological_process
cell movement
GO:0006928
Note that in GO cellular components include whole cells (cell is_a cellular component).
movement of cell or subcellular component
The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
GOC:dgh
GOC:dph
GOC:jl
GOC:mlg
cellular component motion
GOC:dph
GOC:jl
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
biological_process
response to abiotic stress
response to biotic stress
GO:0006950
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
biological_process
GO:0006955
This term was improved by GO_REF:0000022. It was redefined and moved.
immune response
Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
GOC:add
GOC:mtg_15nov05
GO_REF:0000022
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
osmotic response
osmotic stress response
biological_process
GO:0006970
response to osmotic stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
GOC:jl
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
GO:0034984
response to DNA damage stimulus
DNA damage response
cellular DNA damage response
response to genotoxic stress
biological_process
GO:0006974
cellular response to DNA damage stimulus
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
GOC:go_curators
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
biological_process
GO:0006979
response to oxidative stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GOC:jl
PMID:12115731
The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
Wikipedia:Cell_cycle
cell-division cycle
biological_process
GO:0007049
cell cycle
The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
GOC:go_curators
GOC:mtg_cell_cycle
A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell.
Wikipedia:Mitosis#Endomitosis
biological_process
endomitosis
GO:0007113
Note that this term should not be confused with 'abortive mitotic cell cycle ; GO:0033277'. Although abortive mitosis is sometimes called endomitosis, GO:0033277 refers to a process in which a mitotic spindle forms and chromosome separation begins.
endomitotic cell cycle
A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell.
GOC:curators
GOC:dos
GOC:expert_vm
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
Wikipedia:Cell_adhesion
biological_process
cell adhesion molecule activity
GO:0007155
cell adhesion
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GOC:hb
GOC:pf
Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.
biological_process
GO:0007164
establishment of tissue polarity
Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.
GOC:jid
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
biological_process
GO:0007275
Note that this term was 'developmental process'.
multicellular organism development
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
GOC:dph
GOC:ems
GOC:isa_complete
GOC:tb
Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
biological_process
pattern biosynthesis
pattern formation
GO:0007389
pattern specification process
Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
GOC:go_curators
GOC:isa_complete
ISBN:0521436125
Any process that establishes and transmits the specification of sexual status of an individual organism.
Wikipedia:Sex-determination_system
biological_process
GO:0007530
sex determination
Any process that establishes and transmits the specification of sexual status of an individual organism.
ISBN:0198506732
Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.
Wikipedia:Dosage_compensation
biological_process
GO:0007549
dosage compensation
Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.
GOC:ems
ISBN:0140512888
PMID:11498577
The emergence of an adult insect from a pupa case.
Wikipedia:Pupa#Emergence
biological_process
GO:0007562
eclosion
The emergence of an adult insect from a pupa case.
GOC:dgh
GOC:dos
GOC:mah
ISBN:0198600461
A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
GO:0016280
Wikipedia:Aging
ageing
biological_process
GO:0007568
aging
A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
GOC:PO_curators
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
response to nutrients
nutritional response pathway
biological_process
GO:0007584
response to nutrient
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
GOC:go_curators
The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
Wikipedia:Perception
biological_process
GO:0007600
sensory perception
The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
GOC:ai
GOC:dph
The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
Wikipedia:Hearing_(sense)
hearing
perception of sound
biological_process
GO:0007605
sensory perception of sound
The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
GOC:ai
The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
chemosensory perception
biological_process
GO:0007606
sensory perception of chemical stimulus
The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
GOC:ai
The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
Wikipedia:Olfaction
olfaction
scent perception
sense of smell
smell perception
biological_process
GO:0007608
sensory perception of smell
The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
GOC:ai
http://www.onelook.com/
The internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.
Wikipedia:Behavior
behavioral response to stimulus
behaviour
behavioural response to stimulus
biological_process
GO:0007610
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
behavior
The internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.
GOC:ems
GOC:jl
ISBN:0395448956
PMID:20160973
The acquisition and processing of information and/or the storage and retrieval of this information over time.
biological_process
GO:0007611
learning or memory
The acquisition and processing of information and/or the storage and retrieval of this information over time.
GOC:jid
PMID:8938125
Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
Wikipedia:Learning
biological_process
GO:0007612
learning
Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
ISBN:0582227089
ISBN:0721662544
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
Wikipedia:Memory
biological_process
GO:0007613
memory
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
GOC:curators
ISBN:0582227089
http://www.onelook.com/
The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes.
Wikipedia:Mating_behaviour
mating behaviour
biological_process
GO:0007617
mating behavior
The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes.
GOC:ai
GOC:dph
The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes.
biological_process
GO:0007618
mating
The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes.
GOC:jl
ISBN:0387520546
The behavioral interactions between organisms for the purpose of attracting sexual partners.
courtship behaviour
biological_process
GO:0007619
courtship behavior
The behavioral interactions between organisms for the purpose of attracting sexual partners.
GOC:ai
GOC:dph
The act of sexual union between male and female, involving the transfer of sperm.
biological_process
GO:0007620
copulation
The act of sexual union between male and female, involving the transfer of sperm.
ISBN:0721662544
The specific behavior of an organism that recur with measured regularity.
rhythmic behavioral response to stimulus
rhythmic behaviour
rhythmic behavioural response to stimulus
biological_process
GO:0007622
rhythmic behavior
The specific behavior of an organism that recur with measured regularity.
GOC:jl
GOC:pr
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
GO:0050895
Wikipedia:Circadian_rhythm
circadian process
biological_process
circadian response
response to circadian rhythm
GO:0007623
circadian rhythm
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
GOC:bf
GOC:go_curators
The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.
grooming behaviour
biological_process
GO:0007625
grooming behavior
The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.
GOC:jl
GOC:pr
The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions.
behavior via locomotion
locomotion in response to stimulus
locomotory behavioral response to stimulus
locomotory behaviour
locomotory behavioural response to stimulus
biological_process
GO:0007626
locomotory behavior
The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions.
GOC:dph
The sudden, usually upward, movement off the ground or other surface through sudden muscular effort in the legs, following exposure to an external stimulus.
biological_process
GO:0007630
jump response
The sudden, usually upward, movement off the ground or other surface through sudden muscular effort in the legs, following exposure to an external stimulus.
GOC:jid
ISBN:0198606907
Behavior associated with the intake of food.
Wikipedia:List_of_feeding_behaviours
behavioral response to food
behavioural response to food
feeding behaviour
drinking
eating
biological_process
GO:0007631
See also the biological process term 'behavior ; GO:0007610'.
feeding behavior
Behavior associated with the intake of food.
GOC:mah
The behavior of an organism in response to a visual stimulus.
behavioral response to visual stimulus
behavioural response to visual stimulus
visual behaviour
biological_process
GO:0007632
visual behavior
The behavior of an organism in response to a visual stimulus.
GOC:jid
GOC:pr
The behavior of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus.
optokinetic behaviour
biological_process
GO:0007634
optokinetic behavior
The behavior of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus.
GOC:jid
GOC:pr
http://www.mercksource.com
Behavior that is dependent upon the sensation of chemicals.
behavioral response to chemical stimulus
behavioural response to chemical stimulus
chemosensory behaviour
biological_process
GO:0007635
chemosensory behavior
Behavior that is dependent upon the sensation of chemicals.
GOC:go_curators
The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a sugar stimulus.
behavioral response to sugar stimulus, proboscis extension
proboscis extension in response to sugar stimulus
biological_process
GO:0007637
proboscis extension reflex
The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a sugar stimulus.
FB:FBrf0044924
GOC:jid
The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster.
GO:0016542
male courtship behaviour
biological_process
GO:0008049
male courtship behavior
The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster.
GOC:mtg_sensu
GOC:pr
The timing of the emergence of the adult fly from its pupal case, which usually occurs at dawn.
biological_process
GO:0008062
eclosion rhythm
The timing of the emergence of the adult fly from its pupal case, which usually occurs at dawn.
PMID:11715043
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO:0000004
GO:0007582
Wikipedia:Biological_process
biological process
physiological process
biological_process
GO:0008150
Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GOC:go_curators
GOC:isa_complete
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Wikipedia:Metabolism
metabolism
metabolic process resulting in cell growth
metabolism resulting in cell growth
biological_process
GO:0008152
Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.
metabolic process
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GOC:go_curators
ISBN:0198547684
Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).
biological_process
accidental cell death
necrosis
GO:0008219
This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide) show that cell death has occurred, but fail to provide details on death modality (accidental versus programmed). When information is provided on the cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Also, if experimental data suggest that a gene product influences cell death indirectly, rather than being involved in the death process directly, consider annotating to a 'regulation' term.
cell death
Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).
GOC:mah
GOC:mtg_apoptosis
PMID:25236395
Locomotory behavior in a fully developed and mature organism.
adult locomotory behaviour
biological_process
GO:0008344
See also the biological process term 'locomotory behavior ; GO:0007626'.
adult locomotory behavior
Locomotory behavior in a fully developed and mature organism.
GOC:ai
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
response to thermal stimulus
biological_process
GO:0009266
response to temperature stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
GOC:hb
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
response to electromagnetic radiation stimulus
response to radiation stimulus
biological_process
GO:0009314
Note that 'radiation' refers to electromagnetic radiation of any wavelength.
response to radiation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
GOC:jl
Wikipedia:Electromagnetic_radiation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GO:0006951
response to heat shock
biological_process
GO:0009408
response to heat
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GOC:lr
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
biological_process
freezing tolerance
GO:0009409
response to cold
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
GOC:lr
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
biological_process
GO:0009416
response to light stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
GOC:go_curators
ISBN:0582227089
The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
energytaxis
taxis in response to energy source
biological_process
GO:0009453
energy taxis
The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
GOC:jl
PMID:11029423
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
response to environmental stimulus
biological_process
GO:0009605
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to external stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
GOC:hb
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
GO:0002245
physiological response to wounding
biological_process
GO:0009611
response to wounding
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
GOC:go_curators
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus.
response to abiotic stress
biological_process
GO:0009628
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to abiotic stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus.
GOC:hb
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.
response to gravitational stimulus
biological_process
GO:0009629
response to gravity
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.
GOC:hb
Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
Wikipedia:Photoperiodism
response to day length
response to night length
response to photoperiod
biological_process
GO:0009648
photoperiodism
Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
GOC:jid
GOC:pj
ISBN:0582015952
ISBN:0697037754
ISBN:0709408862
The synchronization of a circadian rhythm to environmental time cues such as light.
biological_process
regulation of circadian rhythm phase
GO:0009649
entrainment of circadian clock
The synchronization of a circadian rhythm to environmental time cues such as light.
GOC:jid
The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
embryogenesis and morphogenesis
Wikipedia:Morphogenesis
anatomical structure organization
morphogenesis
biological_process
GO:0009653
anatomical structure morphogenesis
The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
GOC:go_curators
ISBN:0521436125
The establishment, maintenance and elaboration of a pattern along a line or around a point.
biological_process
axis determination
GO:0009798
axis specification
The establishment, maintenance and elaboration of a pattern along a line or around a point.
GOC:dph
GOC:go_curators
GOC:isa_complete
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
histogenesis and organogenesis
Wikipedia:Histogenesis
histogenesis
biological_process
GO:0009888
tissue development
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
ISBN:0471245208
The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
dorsal-ventral axis specification
dorsoventral axis specification
biological_process
dorsal/ventral axis determination
GO:0009950
dorsal/ventral axis specification
The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
GOC:dph
GOC:go_curators
GOC:tb
dorsal-ventral axis specification
GOC:mah
dorsoventral axis specification
GOC:mah
dorsal/ventral axis determination
GOC:dph
The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
dorsal-ventral pattern formation
dorsoventral pattern formation
dorsal/ventral pattern specification
biological_process
GO:0009953
dorsal/ventral pattern formation
The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
GOC:dph
GOC:go_curators
GOC:isa_complete
GOC:tb
dorsal-ventral pattern formation
GOC:mah
dorsoventral pattern formation
GOC:mah
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008151
GO:0050875
cell physiology
cellular physiological process
cell growth and/or maintenance
biological_process
GO:0009987
cellular process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
GOC:isa_complete
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.
biological_process
GO:0009991
response to extracellular stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.
GOC:go_curators
The infolding of a membrane.
biological_process
GO:0010324
membrane invagination
The infolding of a membrane.
GOC:tb
The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
Reactome:REACT_100537
Reactome:REACT_101147
Reactome:REACT_101952
Reactome:REACT_105649
Reactome:REACT_108313
Reactome:REACT_29068
Reactome:REACT_34240
Reactome:REACT_71
Reactome:REACT_78136
Reactome:REACT_78959
Reactome:REACT_79662
Reactome:REACT_85241
Reactome:REACT_85359
Reactome:REACT_86357
Reactome:REACT_89816
Reactome:REACT_91657
Reactome:REACT_91965
Reactome:REACT_93586
Reactome:REACT_93968
Reactome:REACT_94814
Reactome:REACT_98256
Wikipedia:Gene_expression
biological_process
GO:0010467
gene expression
The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
GOC:dph
GOC:tb
Reactome:REACT_100537
Gene Expression, Xenopus tropicalis
Reactome:REACT_101147
Gene Expression, Danio rerio
Reactome:REACT_101952
Gene Expression, Sus scrofa
Reactome:REACT_105649
Gene Expression, Drosophila melanogaster
Reactome:REACT_108313
Gene Expression, Caenorhabditis elegans
Reactome:REACT_29068
Gene Expression, Escherichia coli
Reactome:REACT_34240
Gene Expression, Staphylococcus aureus N315
Reactome:REACT_71
Gene Expression, Homo sapiens
Reactome:REACT_78136
Gene Expression, Mus musculus
Reactome:REACT_78959
Gene Expression, Taeniopygia guttata
Reactome:REACT_79662
Gene Expression, Plasmodium falciparum
Reactome:REACT_85241
Gene Expression, Oryza sativa
Reactome:REACT_85359
Gene Expression, Gallus gallus
Reactome:REACT_86357
Gene Expression, Canis familiaris
Reactome:REACT_89816
Gene Expression, Mycobacterium tuberculosis
Reactome:REACT_91657
Gene Expression, Arabidopsis thaliana
Reactome:REACT_91965
Gene Expression, Rattus norvegicus
Reactome:REACT_93586
Gene Expression, Dictyostelium discoideum
Reactome:REACT_93968
Gene Expression, Bos taurus
Reactome:REACT_94814
Gene Expression, Schizosaccharomyces pombe
Reactome:REACT_98256
Gene Expression, Saccharomyces cerevisiae
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
Wikipedia:Regulation_of_gene_expression
regulation of protein expression
biological_process
regulation of gene product expression
GO:0010468
This class covers any process that regulates the rate of production of a mature gene product, and so includes processes that regulate that rate by regulating the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that regulates the level, stability or availability of mRNA or circRNA for translation and thereby regulates the rate of production of the encoded protein via translation.
regulation of gene expression
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
GOC:dph
GOC:tb
regulation of protein expression
GOC:curators
regulation of gene product expression
GOC:curators
Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
biological_process
GO:0010941
regulation of cell death
Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
GOC:dph
GOC:tb
A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0044235
GO:0071842
cell organisation
cellular component organisation at cellular level
cellular component organisation in other organism
cellular component organization at cellular level
cellular component organization in other organism
biological_process
cell organization and biogenesis
GO:0016043
cellular component organization
A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
GOC:ai
GOC:jl
GOC:mah
cellular component organisation at cellular level
GOC:mah
cellular component organisation in other organism
GOC:mah
cell organization and biogenesis
GOC:mah
The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GO:0048591
cellular growth
growth of cell
biological_process
cell expansion
metabolic process resulting in cell growth
metabolism resulting in cell growth
non-developmental cell growth
non-developmental growth of a unicellular organism
GO:0016049
cell growth
The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GOC:ai
non-developmental cell growth
GOC:mah
non-developmental growth of a unicellular organism
GOC:mah
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0006899
vesicle transport
vesicular transport
nonselective vesicle transport
biological_process
protein sorting along secretory pathway
vesicle trafficking
GO:0016192
vesicle-mediated transport
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GOC:ai
GOC:mah
ISBN:08789310662000
vesicular transport
GOC:mah
OBSOLETE. A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism.
GO:0008219
GO:0012501
Wikipedia:Death
biological_process
GO:0016265
This term was made obsolete because it refers to a phenotype. When death of a cell or tissue is a result of a true biological process, this should be captured using 'programmed cell death' or one of its descendants.
obsolete death
true
OBSOLETE. A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism.
GOC:mah
GOC:mtg_apoptosis
ISBN:0877797099
The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
Wikipedia:Cell_migration
biological_process
GO:0016477
cell migration
The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
GOC:cjm
GOC:dph
GOC:ems
GOC:pf
http://en.wikipedia.org/wiki/Cell_migration
The process during courtship where the male insect vibrates his wings. An example of this is found in Drosophila melanogaster.
male courtship behaviour, veined wing vibration
biological_process
male courtship behavior, wing vibration
male courtship behaviour, wing vibration
GO:0016545
male courtship behavior, veined wing vibration
The process during courtship where the male insect vibrates his wings. An example of this is found in Drosophila melanogaster.
GOC:mtg_sensu
PMID:11092827
The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.
egg laying
egg-laying
Wikipedia:Oviposition
biological_process
GO:0018991
oviposition
The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.
GOC:ems
The specific behavior of an organism that is associated with reproduction.
GO:0033057
reproductive behavior in a multicellular organism
reproductive behaviour
multicellular organism reproductive behavior
biological_process
GO:0019098
reproductive behavior
The specific behavior of an organism that is associated with reproduction.
GOC:jl
GOC:pr
reproductive behavior in a multicellular organism
GOC:curators
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
regulation of metabolism
biological_process
GO:0019222
regulation of metabolic process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GOC:go_curators
A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
Wikipedia:Sexual_reproduction
biological_process
GO:0019953
Sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times.
sexual reproduction
A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
GOC:jl
ISBN:0387520546
http://en.wikipedia.org/wiki/Sexual_reproduction
The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
biological_process
GO:0022402
cell cycle process
The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
GOC:isa_complete
GOC:mtg_cell_cycle
A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
biological_process
GO:0022414
reproductive process
A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
GOC:dph
GOC:isa_complete
The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions.
biological_process
GO:0022610
biological adhesion
The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions.
GOC:isa_complete
A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
multicellular organism dormancy process
spore dormancy process
biological_process
GO:0022611
In plants and animals, dormancy may be a response to environmental conditions such as seasonality or extreme heat, drought, or cold. In plants, dormancy may involve the formation of dormant buds, and may be preceded by the senescence of plant parts such as leaves in woody plants or most of the shoot system in herbaceous perennials. The exit from dormancy in vascular plants is marked by resumed growth of buds and/or growth of vascular cambium.
dormancy process
A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
GOC:PO_curators
GOC:isa_complete
PO_REF:00009
spore dormancy process
GOC:PO_curators
Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.
Wikipedia:Sleep
biological_process
diapause
dormancy
lethargus
GO:0030431
sleep
Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.
ISBN:0192800981
Behavior in a fully developed and mature organism.
adult behavioral response to stimulus
adult behaviour
adult behavioural response to stimulus
biological_process
GO:0030534
See also the biological process term 'behavior ; GO:0007610'.
adult behavior
Behavior in a fully developed and mature organism.
GOC:mah
ISBN:0877797099
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
biological_process
GO:0031667
response to nutrient levels
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
GOC:mah
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
GO:0050874
organismal physiological process
biological_process
GO:0032501
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
GOC:curators
GOC:dph
GOC:isa_complete
GOC:tb
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
development
biological_process
GO:0032502
developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
GOC:isa_complete
The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
biological_process
GO:0032504
multicellular organism reproduction
The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
GOC:isa_complete
GOC:jid
The controlled release of a substance by a cell.
Wikipedia:Secretion
cellular secretion
biological_process
GO:0032940
secretion by cell
The controlled release of a substance by a cell.
GOC:mah
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
biological_process
GO:0033554
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
cellular response to stress
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
biological_process
GO:0033555
multicellular organismal response to stress
Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
Reactome:REACT_102000
Reactome:REACT_103710
Reactome:REACT_107293
Reactome:REACT_108179
Reactome:REACT_109042
Reactome:REACT_13
Reactome:REACT_28699
Reactome:REACT_29108
Reactome:REACT_32429
Reactome:REACT_33347
Reactome:REACT_34326
Reactome:REACT_55564
Reactome:REACT_77741
Reactome:REACT_82379
Reactome:REACT_86268
Reactome:REACT_90299
Reactome:REACT_91959
Reactome:REACT_93580
Reactome:REACT_95666
Reactome:REACT_98086
Reactome:REACT_99241
cellular nitrogen compound metabolism
biological_process
GO:0034641
cellular nitrogen compound metabolic process
The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
GOC:mah
Reactome:REACT_102000
Metabolism of amino acids and derivatives, Mycobacterium tuberculosis
Reactome:REACT_103710
Metabolism of amino acids and derivatives, Escherichia coli
Reactome:REACT_107293
Metabolism of amino acids and derivatives, Arabidopsis thaliana
Reactome:REACT_108179
Metabolism of amino acids and derivatives, Xenopus tropicalis
Reactome:REACT_109042
Metabolism of amino acids and derivatives, Sus scrofa
Reactome:REACT_13
Metabolism of amino acids and derivatives, Homo sapiens
Reactome:REACT_28699
Metabolism of amino acids and derivatives, Saccharomyces cerevisiae
Reactome:REACT_29108
Metabolism of amino acids and derivatives, Caenorhabditis elegans
Reactome:REACT_32429
Metabolism of amino acids and derivatives, Rattus norvegicus
Reactome:REACT_33347
Metabolism of amino acids and derivatives, Mus musculus
Reactome:REACT_34326
Metabolism of amino acids and derivatives, Staphylococcus aureus N315
Reactome:REACT_55564
Metabolism of amino acids and derivatives, Gallus gallus
Reactome:REACT_77741
Metabolism of amino acids and derivatives, Taeniopygia guttata
Reactome:REACT_82379
Metabolism of amino acids and derivatives, Bos taurus
Reactome:REACT_86268
Metabolism of amino acids and derivatives, Drosophila melanogaster
Reactome:REACT_90299
Metabolism of amino acids and derivatives, Oryza sativa
Reactome:REACT_91959
Metabolism of amino acids and derivatives, Plasmodium falciparum
Reactome:REACT_93580
Metabolism of amino acids and derivatives, Danio rerio
Reactome:REACT_95666
Metabolism of amino acids and derivatives, Canis familiaris
Reactome:REACT_98086
Metabolism of amino acids and derivatives, Dictyostelium discoideum
Reactome:REACT_99241
Metabolism of amino acids and derivatives, Schizosaccharomyces pombe
The specific behavior of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell.
hatching behaviour
biological_process
GO:0035187
hatching behavior
The specific behavior of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell.
GOC:pr
PMID:10436051
The emergence of an immature organism from a protective structure.
biological_process
GO:0035188
hatching
The emergence of an immature organism from a protective structure.
GOC:dgh
GOC:isa_complete
ISBN:0198612001
The fluctuation in mating behavior that occurs over an approximately 24 hour cycle.
circadian mating behaviour
circadian mating rhythm
biological_process
GO:0035648
circadian mating behavior
The fluctuation in mating behavior that occurs over an approximately 24 hour cycle.
GOC:bf
GOC:dos
PMID:11470898
PMID:17276917
circadian mating behaviour
GOC:bf
circadian mating rhythm
GOC:dos
The increase in size or mass of an entire organism, a part of an organism or a cell.
GO:0048590
biological_process
growth pattern
non-developmental growth
GO:0040007
See also the biological process term 'cell growth ; GO:0016049'.
growth
The increase in size or mass of an entire organism, a part of an organism or a cell.
GOC:bf
GOC:ma
non-developmental growth
GOC:mah
Self-propelled movement of a cell or organism from one location to another.
biological_process
GO:0040011
locomotion
Self-propelled movement of a cell or organism from one location to another.
GOC:dgh
Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
biological_process
GO:0040029
regulation of gene expression, epigenetic
Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
PMID:10521337
PMID:11498582
The series of events that restore integrity to a damaged tissue, following an injury.
Wikipedia:Wound_healing
biological_process
GO:0042060
wound healing
The series of events that restore integrity to a damaged tissue, following an injury.
GOC:bf
PMID:15269788
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
response to chemical stimulus
response to chemical substance
biological_process
GO:0042221
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to chemical
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
GOC:jl
response to chemical stimulus
GOC:dos
The directed movement of a motile cell or organism in response to an external stimulus.
Wikipedia:Taxis
directed movement in response to stimulus
biological_process
GO:0042330
taxis
The directed movement of a motile cell or organism in response to an external stimulus.
GOC:jl
ISBN:0192801023
The directed movement of a motile cell or organism in response to light.
GO:0046953
Wikipedia:Phototaxis
phototactic behavior
phototactic behaviour
taxis in response to light
biological_process
GO:0042331
phototaxis
The directed movement of a motile cell or organism in response to light.
GOC:jl
ISBN:0192800981
The directed movement of a motile cell or organism in response to gravity.
GO:0048062
geotactic behavior
geotactic behaviour
geotaxis
gravitactic behavior
gravitactic behaviour
taxis in response to gravitational stimulus
taxis in response to gravity
biological_process
GO:0042332
gravitaxis
The directed movement of a motile cell or organism in response to gravity.
GOC:jid
GOC:jl
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
biological_process
GO:0042594
response to starvation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
GOC:go_curators
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
biological_process
GO:0042752
regulation of circadian rhythm
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
GOC:dph
GOC:jl
GOC:tb
The directed movement of a motile cell or organism in response to a temperature gradient. Movement may be towards either a higher or lower temperature.
Wikipedia:Thermotaxis
taxis in response to temperature stimulus
biological_process
GO:0043052
thermotaxis
The directed movement of a motile cell or organism in response to a temperature gradient. Movement may be towards either a higher or lower temperature.
GOC:cab1
WB_REF:cgc467
The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).
photoentrainment of circadian clock
biological_process
GO:0043153
entrainment of circadian clock by photoperiod
The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).
GOC:jl
photoentrainment of circadian clock
PMID:10217146
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0043283
biopolymer metabolic process
macromolecule metabolism
biological_process
GO:0043170
macromolecule metabolic process
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
CHEBI:33694
GOC:mah
biopolymer metabolic process
GOC:mtg_chebi_dec09
The chemical reactions and pathways by which individual cells transform chemical substances.
cellular metabolism
biological_process
intermediary metabolism
GO:0044237
cellular metabolic process
The chemical reactions and pathways by which individual cells transform chemical substances.
GOC:go_curators
intermediary metabolism
GOC:mah
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
primary metabolism
biological_process
GO:0044238
primary metabolic process
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GOC:go_curators
http://www.metacyc.org
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
GO:0034960
cellular biopolymer metabolic process
cellular macromolecule metabolism
biological_process
GO:0044260
cellular macromolecule metabolic process
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
CHEBI:33694
GOC:mah
cellular biopolymer metabolic process
GOC:mtg_chebi_dec09
A biological process that involves only one organism.
single organism process
biological_process
GO:0044699
single-organism process
A biological process that involves only one organism.
GOC:jl
A biological process that directly contributes to the process of producing new individuals, involving a single organism.
biological_process
GO:0044702
single organism reproductive process
A biological process that directly contributes to the process of producing new individuals, involving a single organism.
GOC:jl
A biological process that directly contributes to the process of producing new individuals, involving another organism.
biological_process
GO:0044703
multi-organism reproductive process
A biological process that directly contributes to the process of producing new individuals, involving another organism.
GOC:jl
The specific behavior of an organism that is associated with reproduction involving a single organism.
biological_process
GO:0044704
single-organism reproductive behavior
The specific behavior of an organism that is associated with reproduction involving a single organism.
GOC:jl
GOC:pr
The specific behavior of an organism that is associated with reproduction involving another organism of the same or different species.
biological_process
GO:0044705
multi-organism reproductive behavior
The specific behavior of an organism that is associated with reproduction involving another organism of the same or different species.
GOC:jl
GOC:pr
A multicellular organism process which involves another multicellular organism of the same or different species.
biological_process
GO:0044706
multi-multicellular organism process
A multicellular organism process which involves another multicellular organism of the same or different species.
GOC:jl
A biological process occurring within a single, multicellular organism.
biological_process
GO:0044707
single-multicellular organism process
A biological process occurring within a single, multicellular organism.
GOC:jl
The specific behavior of a single organism in response to external or internal stimuli.
biological_process
GO:0044708
single-organism behavior
The specific behavior of a single organism in response to external or internal stimuli.
GOC:jl
GOC:pr
A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
biological_process
GO:0044710
single-organism metabolic process
A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
GOC:jl
Any process that is carried out at the cellular level, occurring within a single organism.
biological_process
GO:0044763
single-organism cellular process
Any process that is carried out at the cellular level, occurring within a single organism.
GOC:jl
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore, involving a single organism.
biological_process
GO:0044765
single-organism transport
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore, involving a single organism.
GOC:jl
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
biological_process
GO:0044767
single-organism developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
GOC:jl
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
male courtship behavior, song production
male courtship behaviour, song production
male courtship behaviour, veined wing generated song production
biological_process
GO:0045433
male courtship behavior, veined wing generated song production
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
GOC:mtg_sensu
PMID:11092827
The rhythm of the locomotor activity of an organism during its 24 hour activity cycle.
circadian locomotor activity rhythm
biological_process
GO:0045475
locomotor rhythm
The rhythm of the locomotor activity of an organism during its 24 hour activity cycle.
GOC:go_curators
The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
heterocycle metabolism
biological_process
GO:0046483
heterocycle metabolic process
The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
CHEBI:5686
ISBN:0198506732
The controlled release of a substance by a cell or a tissue.
biological_process
GO:0046903
secretion
The controlled release of a substance by a cell or a tissue.
GOC:ai
The directed movement of a motile cell or organism away from the source of gravity.
GO:0048063
negative geotactic behavior
negative geotactic behaviour
negative gravitactic behavior
negative gravitactic behaviour
negative taxis in response to gravity
negative taxis in response to gravitytaxis in response to gravitational stimulus
biological_process
GO:0048060
negative gravitaxis
The directed movement of a motile cell or organism away from the source of gravity.
GOC:jid
The process during courtship where the male insect extends his wings. An example of this process is found in Drosophila melanogaster.
male courtship behavior, wing extension
male courtship behaviour, wing extension
male courtship behaviour, veined wing extension
biological_process
GO:0048065
male courtship behavior, veined wing extension
The process during courtship where the male insect extends his wings. An example of this process is found in Drosophila melanogaster.
GOC:jid
GOC:mtg_sensu
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.
GO:0048267
physiological response to pain
biological_process
GO:0048265
response to pain
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.
GOC:jid
PMID:10203867
PMID:12723742
PMID:12843304
Wikipedia:Pain
Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
biological_process
rhythm
GO:0048511
rhythmic process
Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
GOC:jid
The specific behavior of an organism that recurs with a regularity of approximately 24 hours.
circadian rhythm behavior
biological_process
GO:0048512
circadian behavior
The specific behavior of an organism that recurs with a regularity of approximately 24 hours.
GOC:bf
GOC:go_curators
GOC:pr
The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
organismal reproductive process
reproductive process in a multicellular organism
biological_process
GO:0048609
multicellular organismal reproductive process
The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
GOC:dph
GOC:jid
GOC:tb
organismal reproductive process
GOC:curators
reproductive process in a multicellular organism
GOC:curators
OBSOLETE. A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism.
cellular process involved in reproduction
biological_process
reproductive cellular process
GO:0048610
This process was made obsolete because we felt it not provide a particularly useful classification, and its very broad logical definition caused regular problems in our inference pipelines.
obsolete cellular process involved in reproduction
true
OBSOLETE. A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism.
GOC:dph
GOC:jid
reproductive cellular process
GOC:dph
GOC:tb
The process in which the anatomical structures of a tissue are generated and organized.
biological_process
GO:0048729
tissue morphogenesis
The process in which the anatomical structures of a tissue are generated and organized.
GOC:dph
GOC:jid
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
development of an anatomical structure
biological_process
GO:0048856
This term was added by GO_REF:0000021.
anatomical structure development
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
GOC:mtg_15jun06
GO_REF:0000021
Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
cell locomotion
movement of a cell
biological_process
cell movement
GO:0048870
cell motility
Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
GOC:dgh
GOC:dph
GOC:isa_complete
GOC:mlg
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GO:0050791
regulation of physiological process
biological_process
GO:0050789
regulation of biological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GOC:ai
GOC:go_curators
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0051244
regulation of cellular physiological process
biological_process
GO:0050794
regulation of cellular process
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
A organ system process carried out by any of the organs or tissues of neurological system.
neurophysiological process
biological_process
pan-neural process
GO:0050877
neurological system process
A organ system process carried out by any of the organs or tissues of neurological system.
GOC:ai
GOC:mtg_cardio
Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism.
biological_process
GO:0050879
multicellular organismal movement
Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism.
GOC:dph
GOC:mtg_muscle
GOC:tb
The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
Wikipedia:Cognition
biological_process
GO:0050890
cognition
The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
ISBN:0721619908
http://www.onelook.com/
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GO:0051869
physiological response to stimulus
biological_process
GO:0050896
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GOC:ai
GOC:bf
The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process.
Wikipedia:Taste
gustation
sense of taste
taste
taste perception
biological_process
GO:0050909
sensory perception of taste
The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process.
GOC:ai
http://www.onelook.com/
The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
biological_process
GO:0050953
sensory perception of light stimulus
The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
GOC:ai
The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
mechanosensory perception
perception of mechanical stimulus
biological_process
chemi-mechanical coupling
GO:0050954
sensory perception of mechanical stimulus
The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
GOC:ai
The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).
Wikipedia:Touch
perception of touch
tactile sense
taction
tactition
biological_process
GO:0050975
sensory perception of touch
The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).
GOC:ai
Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.
establishment and maintenance of localization
establishment and maintenance of position
localisation
establishment and maintenance of cellular component location
establishment and maintenance of substance location
establishment and maintenance of substrate location
biological_process
GO:0051179
localization
Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.
GOC:ai
GOC:dos
localisation
GOC:mah
Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
establishment of localisation
biological_process
GO:0051234
establishment of localization
Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
GOC:ai
GOC:dos
establishment of localisation
GOC:mah
The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
Wikipedia:Cell_division
biological_process
GO:0051301
Note that this term differs from 'cytokinesis ; GO:0000910' in that cytokinesis does not include nuclear division.
cell division
The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
GOC:di
GOC:go_curators
GOC:pr
Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions.
GO:0007126
Wikipedia:Meiosis
biological_process
meiosis
GO:0051321
meiotic cell cycle
Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions.
GOC:ai
A cellular localization process whereby a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a cell including the localization of substances or cellular entities to the cell membrane.
cellular localisation
establishment and maintenance of cellular localization
establishment and maintenance of localization in cell or cell membrane
intracellular localization
localization within cell
biological_process
GO:0051641
cellular localization
A cellular localization process whereby a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a cell including the localization of substances or cellular entities to the cell membrane.
GOC:tb
GOC:vw
cellular localisation
GOC:mah
Any process, occuring in a cell, that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
establishment of localisation in cell
establishment of intracellular localization
establishment of localization within cell
positioning within cell
biological_process
establishment of cellular localization
GO:0051649
establishment of localization in cell
Any process, occuring in a cell, that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
GOC:ai
GOC:dos
GOC:dph
GOC:tb
establishment of localisation in cell
GOC:mah
establishment of cellular localization
GOC:dph
GOC:tb
Any process in which a cell is transported to, and/or maintained in, a specific location.
cell localization
establishment and maintenance of cell localization
establishment and maintenance of localization of cell
localisation of cell
biological_process
GO:0051674
localization of cell
Any process in which a cell is transported to, and/or maintained in, a specific location.
GOC:ai
localisation of cell
GOC:mah
A biological process which involves another organism of the same or different species.
GO:0051706
interaction between organisms
physiological interaction between organisms
physiological interaction with other organism
biological_process
GO:0051704
multi-organism process
A biological process which involves another organism of the same or different species.
GOC:jl
Any process in which an organism has a behavioral effect on another organism of the same or different species.
GO:0023032
GO:0044709
behavioral interaction between organisms
behavioral interaction with other organism
behavioural interaction between organisms
behavioural interaction with other organism
behavioral signaling
behavioral signalling
biological_process
GO:0051705
multi-organism behavior
Any process in which an organism has a behavioral effect on another organism of the same or different species.
GOC:ai
behavioral signalling
GOC:mah
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
biological_process
GO:0051716
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
cellular response to stimulus
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
GOC:bf
GOC:jl
Any process that results in a change in the behavior of an organism as a result of a nutrient stimulus.
behavioural response to nutrient
biological_process
GO:0051780
behavioral response to nutrient
Any process that results in a change in the behavior of an organism as a result of a nutrient stimulus.
GOC:ai
The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
Wikipedia:Diapause
biological_process
GO:0055115
entry into diapause
The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
GOC:ds
GOC:jid
GOC:mah
The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
biological_process
GO:0055116
entry into reproductive diapause
The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
GOC:ds
GOC:jid
GOC:mah
An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness.
Wikipedia:Reflex
biological_process
GO:0060004
reflex
An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness.
GOC:dph
ISBN:087797099
The specific behavior of a male organism that is associated with reproduction.
biological_process
GO:0060179
male mating behavior
The specific behavior of a male organism that is associated with reproduction.
GOC:dph
GOC:pr
GOC:tb
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
biological_process
GO:0060255
regulation of macromolecule metabolic process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GOC:dph
GOC:tb
Self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement.
biological_process
GO:0060361
flight
Self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement.
GOC:dph
The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure.
biological_process
GO:0060429
epithelium development
The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure.
GOC:dph
GOC:mtg_lung
A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO:0016044
Reactome:REACT_101524
Reactome:REACT_103082
Reactome:REACT_11123
Reactome:REACT_29278
Reactome:REACT_32337
Reactome:REACT_33741
Reactome:REACT_34084
Reactome:REACT_78213
Reactome:REACT_78288
Reactome:REACT_83546
Reactome:REACT_86557
Reactome:REACT_87431
Reactome:REACT_88307
Reactome:REACT_91154
Reactome:REACT_93714
Reactome:REACT_95586
Reactome:REACT_96516
Reactome:REACT_97881
cellular membrane organisation
cellular membrane organization
membrane organisation
biological_process
membrane organization and biogenesis
GO:0061024
membrane organization
A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GOC:dph
GOC:tb
Reactome:REACT_101524
Membrane Trafficking, Dictyostelium discoideum
Reactome:REACT_103082
Membrane Trafficking, Schizosaccharomyces pombe
Reactome:REACT_11123
Membrane Trafficking, Homo sapiens
Reactome:REACT_29278
Membrane Trafficking, Sus scrofa
Reactome:REACT_32337
Membrane Trafficking, Taeniopygia guttata
Reactome:REACT_33741
Membrane Trafficking, Bos taurus
Reactome:REACT_34084
Membrane Trafficking, Caenorhabditis elegans
Reactome:REACT_78213
Membrane Trafficking, Plasmodium falciparum
Reactome:REACT_78288
Membrane Trafficking, Xenopus tropicalis
Reactome:REACT_83546
Membrane Trafficking, Oryza sativa
Reactome:REACT_86557
Membrane Trafficking, Arabidopsis thaliana
Reactome:REACT_87431
Membrane Trafficking, Drosophila melanogaster
Reactome:REACT_88307
Membrane Trafficking, Mus musculus
Reactome:REACT_91154
Membrane Trafficking, Saccharomyces cerevisiae
Reactome:REACT_93714
Membrane Trafficking, Danio rerio
Reactome:REACT_95586
Membrane Trafficking, Gallus gallus
Reactome:REACT_96516
Membrane Trafficking, Canis familiaris
Reactome:REACT_97881
Membrane Trafficking, Rattus norvegicus
cellular membrane organisation
GOC:curators
membrane organisation
GOC:mah
membrane organization and biogenesis
GOC:mah
Any process that modulates a measurable attribute of any biological process, quality or function.
regulation
biological_process
GO:0065007
biological regulation
Any process that modulates a measurable attribute of any biological process, quality or function.
GOC:dph
GOC:isa_complete
GOC:mah
GOC:pr
GOC:vw
The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case.
biological_process
GO:0071684
organism emergence from protective structure
The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case.
GOC:mah
The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
organic molecular entity metabolic process
organic molecular entity metabolism
organic substance metabolism
biological_process
GO:0071704
organic substance metabolic process
The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
CHEBI:50860
GOC:mah
A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0071841
cellular component organisation or biogenesis
cellular component organisation or biogenesis at cellular level
cellular component organization or biogenesis at cellular level
biological_process
GO:0071840
cellular component organization or biogenesis
A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.
GOC:mah
cellular component organisation or biogenesis
GOC:mah
cellular component organisation or biogenesis at cellular level
GOC:mah
Any cellular metabolic process involving nucleic acids.
biological_process
GO:0090304
nucleic acid metabolic process
Any cellular metabolic process involving nucleic acids.
GOC:dph
GOC:tb
The chemical reactions and pathways involving organic cyclic compound.
organic cyclic compound metabolism
biological_process
GO:1901360
organic cyclic compound metabolic process
The chemical reactions and pathways involving organic cyclic compound.
GOC:TermGenie
organic cyclic compound metabolism
GOC:TermGenie
A localization which involves only one organism.
single organism localization
biological_process
GO:1902578
single-organism localization
A localization which involves only one organism.
GOC:jl
GO_REF:0000089
PMID:1234
single organism localization
GOC:TermGenie
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
trait
quality
PATO:0000001
quality
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
PATOC:GVG
A composite chromatic quality composed of hue, saturation and intensity parts.
relative color
quality
PATO:0000014
color
A composite chromatic quality composed of hue, saturation and intensity parts.
PATOC:GVG
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
quality
PATO:0000044
frequency
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
Wikipedia:http://en.wikipedia.org/wiki/frequency
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
quality
PATO:0000047
biological sex
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
MGED:MGED
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
quality
PATO:0000051
morphology
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
PATOC:GVG
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
relational shape quality
quality
PATO:0000052
shape
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
PATOC:GVG
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
quality
nutritional quality
PATO:0000056
trophic quality
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Trophic_level
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.
quality
PATO:0000057
occurrence
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.
PATOC:GVG
quality
PATO:0000068
qualitative
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
quality
PATO:0000069
deviation(from_normal)
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
PATOC:GVG
The number of entities of this type that are part of the whole organism.
presence or absence in organism
quantitative
quality
amount
count in organism
number
presence
PATO:0000070
count
The number of entities of this type that are part of the whole organism.
PATOC:GVG
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
quality
PATO:0000117
size
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
WordNet:WordNet
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
location
placement
relational spatial quality
quality
PATO:0000140
position
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
PATOC:GVG
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
relational structural quality
quality
PATO:0000141
structure
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
PATOC:GVG
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
quality
PATO:0000161
rate
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
PATOC:melissa
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
quality
PATO:0000169
viability
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
PATOC:GVG
An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.
behavioral quality
quality
behavioural quality
PATO:0000186
behavioral quality
An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.
PATOC:GVG
A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement.
quality
PATO:0000188
coordination
A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement.
PATOC:GVG
A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes.
quality
PATO:0000273
fecundity
A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes.
Wikipedia:http://en.wikipedia.org/wiki/Fecundity
A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
quality
PATO:0000274
fertility
A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
PATOC:GVG
A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
quality
PATO:0000277
female fertility
A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
quality
PATO:0000279
male fertility
A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
A frequency which is relatively high.
high frequency
quality
frequent
PATO:0000380
increased frequency
A frequency which is relatively high.
PATOC:GVG
A frequency which is relatively low.
low frequency
quality
infrequent
PATO:0000381
decreased frequency
A frequency which is relatively low.
PATOC:GVG
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
quality
PATO:0000383
female
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
MGED:MGED
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
quality
PATO:0000384
male
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
MGED:MGED
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
quality
PATO:0000422
auxotrophic
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic
A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
quality
aberrant
atypia
atypical
defective
PATO:0000460
abnormal
A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
PATOC:GVG
A quality denoting the lack of an entity.
absence
absent from organism
quality
PATO:0000462
absent
A quality denoting the lack of an entity.
thefreedictionary.:thefreedictionary.
A size quality which is relatively high.
quality
big
enlarged
great
large
PATO:0000586
increased size
A size quality which is relatively high.
PATOC:GVG
A size quality which is relatively low.
hypoplasia
underdeveloped
quality
small
tiny
PATO:0000587
decreased size
A size quality which is relatively low.
PATOC:GVG
A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells.
hyperplasia
quality
overdeveloped
PATO:0000644
hyperplastic
A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells.
Wikipedia:http://en.wikipedia.org/wiki/Hyperplastic
A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.
hypoplasia
quality
underdeveloped
PATO:0000645
hypoplastic
A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.
PATOC:GVG
A viability quality inhering in a population by virtue of the bearer's long term survival inability.
quality
PATO:0000718
lethal (sensu genetics)
A viability quality inhering in a population by virtue of the bearer's long term survival inability.
PATOC:GVG
A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.
quality
PATO:0000719
viable
A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.
PATOC:GVG
A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.
quality
PATO:0000770
uncoordinated
A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.
PATOC:GVG
A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
quality
PATO:0000888
female fertile
A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
quality
PATO:0000891
male fertile
A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
quality
female infertile
PATO:0000892
female sterile
A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
A rate which is relatively low.
slow rate
quality
PATO:0000911
decreased rate
A rate which is relatively low.
PATO:GVG
A rate which is relatively high.
fast rate
high rate
quality
PATO:0000912
increased rate
A rate which is relatively high.
PATO:GVG
A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
quality
PATO:0000955
fertile
A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
quality
PATO:0000956
sterile
A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
relational physical quality
quality
PATO:0001018
physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATOC:GVG
A quality which inheres in an process.
quality of a process
quality of occurrent
quality of process
relational quality of occurrent
quality
PATO:0001236
process quality
A quality which inheres in an process.
PATOC:GVG
A quality which inheres in a continuant.
monadic quality of a continuant
multiply inhering quality of a physical entity
quality of a continuant
quality of a single physical entity
quality of an object
quality of continuant
monadic quality of an object
monadic quality of continuant
quality
PATO:0001241
physical object quality
A quality which inheres in a continuant.
PATOC:GVG
A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
quality
PATO:0001291
electromagnetic (EM) radiation quality
A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
quality
PATO:0001300
optical quality
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
PATOC:GVG
An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
quality
PATO:0001434
reproductive quality
An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
WordNet:WordNet
A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.
sensitivity of occurrent
quality
PATO:0001457
sensitivity of a process
A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.
PATOC:GVG
A sensitivity of a process which is higher than normal or average.
high sensitivity of occurrent
increased sensitivity of occurrent
quality
PATO:0001551
increased sensitivity of a process
A sensitivity of a process which is higher than normal or average.
PATO:GVG
A sensitivity of a process which is lower than normal or average.
decreased sensitivity of occurrent
low sensitivity of occurrent
quality
PATO:0001552
decreased sensitivity of a process
A sensitivity of a process which is lower than normal or average.
PATO:GVG
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
extra or missing physical or functional parts
has or lacks parts of type
mereological quality
number of
quality
cardinality
number
PATO:0001555
has number of
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
PATOC:CJM
A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.
quality
PATO:0001558
lacking processual parts
A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.
PATOC:GVG
A quality of a process inhering in a bearer by virtue of the bearer's processual parts.
quality
PATO:0001564
extra or missing processual parts
A quality of a process inhering in a bearer by virtue of the bearer's processual parts.
PATOC:GVG
A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.
atrophic
quality
PATO:0001623
atrophied
A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.
Wiikipedia:Wasting
Wikipedia:Atrophy
A fecundity which is relatively low.
quality
PATO:0001696
decreased fecundity
A fecundity which is relatively low.
PATOC:GVG
A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
quality
PATO:0001739
radiation quality
A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
PATOC:GVG
quality
PATO:0001760
female semi-fertile
quality
PATO:0001761
male semi-fertile
quality
PATO:0001762
male semi-sterile
quality
PATO:0001763
female semi-sterile
A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.
quality
PATO:0001768
semi-lethal (sensu genetics)
A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.
PATOC:CVC
A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis.
quality
cellular polarity
PATO:0001769
positional polarity
A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis.
PATOC:MAH
cellular polarity
PATOC:MAH
A viability quality inhering in a population by virtue of some of it's members' ability to survive.
quality
PATO:0001770
semi-viable
A viability quality inhering in a population by virtue of some of it's members' ability to survive.
PATOC:CVC
A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile.
quality
grandchildless
PATO:0001862
lack of fertility in offspring
A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile.
PATOC:GVG
quality
PATO:0001894
phenotypic sex
A quality that inheres in an entire organism or part of an organism.
quality
PATO:0001995
organismal quality
A quality that inheres in an entire organism or part of an organism.
PATOC:CJM
The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.
loss of
quality
PATO:0001999
lacks parts or has fewer parts of type
The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.
PATOC:CJM
The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.
decreased number of
has decreased number of
has fewer physical parts of type
quality
PATO:0002001
has fewer parts of type
The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.
PATOC:CJM
The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
has extra parts of
has increased number of
having extra physical parts
having supernumerary physical parts
increased number of
quality
PATO:0002002
has extra parts of type
The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
PATOC:CJM
A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.
tumorous
quality
PATO:0002011
neoplastic
A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.
PATOC:MAH
A quality of a process that has a value that is increased compared to normal or average.
quality
PATO:0002051
increased occurrence
A quality of a process that has a value that is increased compared to normal or average.
PATOC:GVG
An occurrence which is relatively low.
quality
PATO:0002052
decreased occurrence
An occurrence which is relatively low.
PATOC:GVG
quality
PATO:0002062
physical quality of a process
Having extra or fewer parts.
quality
PATO:0002083
altered number of
Having extra or fewer parts.
PATOC:GVG
quality
PATO:0002290
aplastic/hypoplastic
A quality that has a value that is increased compared to normal or average.
quality
PATO:0002300
increased quality
A quality that has a value that is increased compared to normal or average.
PATOC:GVG
A quality that has a value that is decreased compared to normal or average.
quality
PATO:0002301
decreased quality
A quality that has a value that is decreased compared to normal or average.
PATOC:GVG
A quality of a process that has a value that is decreased compared to normal or average.
quality
PATO:0002302
decreased process quality
A quality of a process that has a value that is decreased compared to normal or average.
PATOC:GVG
A quality of an object that has a value that is decreased compared to normal or average.
quality
PATO:0002303
decreased object quality
A quality of an object that has a value that is decreased compared to normal or average.
PATOC:GVG
A quality of a process that has a value that is increased compared to normal or average.
quality
PATO:0002304
increased process quality
A quality of a process that has a value that is increased compared to normal or average.
PATOC:GVG
A quality of an object that has a value that is increased compared to normal or average.
quality
PATO:0002305
increased object quality
A quality of an object that has a value that is increased compared to normal or average.
PATOC:GVG
A temporal distribution pattern of process occurrences within a regulation/reference process.
quality
PATO:0002323
temporal distribution quality
A temporal distribution pattern of process occurrences within a regulation/reference process.
PATOC:LC
population
population of Drosophila
dependent continuant
population of cells
A fecundity which is relatively high
quality
PATO:0001695
increased fecundity
A fecundity which is relatively high
PATOC:GVG