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ribonucleoprotein complex
ribonucleoprotein complex
A macromolecular complex containing both protein and RNA molecules.
complementary nucleotide probe role
complementary nucleotide probe role
A role played by a nucleic acid molecule that is used in a planned process for its ability to bind a nucleic acid molecules with complementary nucleotide sequence
Sauropsida
Sauropsida
processed material
Is a material entity that is created or changed during material processing.
processed material
Aves
Aves
a planned process with the objective of obtaining specimen.
specimen creation
specimen creation
biome
biome
A major class of ecologically similar communities of plants, animals, and other organisms. Biomes are defined based on factors such as plant structures (such as trees, shrubs, and grasses), leaf types (such as broadleaf and needleleaf), plant spacing (forest, woodland, savanna), and other factors like climate. Unlike ecozones, biomes are not defined by genetic, taxonomic, or historical similarities. Biomes are often identified with particular patterns of ecological succession and climax vegetation.
Bacteria
organismal quality
organismal quality
A quality that inheres in an entire organism or part of an organism.
Mammalia
Mammalia
specimen role
a role borne by a material entity that is gained during a specimen creation process and that is realized by use of the specimen in an investigation
specimen role
assay
assay
A planned process with the objective to produce information about some evaluant
messenger RNA
messenger RNA
An RNA molecule that transfers the coding information for protein synthesis from the chromosomes to the ribosomes mRNA is formed from a DNA template by transcription. It may be a copy of a single gene or of several adjacent genes (polycistronic mRNA). On the ribosome, the sequence is converted into the programmed amino acid sequence through translation.
Gnathostomata
Gnathostomata
Sus scrofa
Sus scrofa
Suidae
Suidae
nucleic acid
nucleic acid
A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid.
diagnosis is an assessment of a disease or injury, its likely prognosis and treatment.
diagnosis textual entity
diagnosis textual entity
Sus
Sus
force
force
A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.
ribonucleic acids
ribonucleic acids
Naturally occurring polyribonucleotides.
dead
dead
A viability quality inhering in a bearer by virtue of the cessation of the bearer's life.
establishing cell culture
establishing a cell culture is a process which results in creating an in vitro environment in which cells are sustained from input material containing cells. input: cell-containing material, output cell culture, part of cell culturing. Cells are originally plated at a certain concentration referred to as seeding density.
establishing cell culture
peptide
Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid.
peptide
A measurement datum that representing the primary structure of a macromolecule(it's sequence) sometimes associated with an indicator of confidence of that measurement.
sequence data
sequence data
Thogotovirus
Thogotovirus
genotype information
genotype information
a genetic characteristics information that is about the genetic material of an organism and minimally includes information about the genetic background and can in addition contain information about specific alleles, genetic modifications, etc.
viral hemagglutination inhibition assay
a highly sensitive procedure for the measurement of soluble antigens in biologic specimens; the amount of hemagglutination reflects the amount of free antibody present after reaction with the specimen and thus varies inversely with amount of antigen in the specimen.
viral hemagglutination inhibition assay
Tetrapoda
Tetrapoda
Catarrhini
Catarrhini
Theria
Theria
Amniota
Amniota
Hominoidea
Hominoidea
Theropoda
Theropoda
Coelurosauria
Coelurosauria
administering substance in vivo
A process by which a substance is intentionally given to an organism
administering substance in vivo
Simiiformes
Simiiformes
a process with the objective to obtain a material entity that was part of an organism for potential future use in an investigation
collecting specimen from organism
collecting specimen from organism
protein
protein
killing
A protocol application in which an organism is intentionally put to death
killing
population
population
a population is a collection of individuals from the same taxonomic class living, counted or sampled at a particular site or in a particular area
categorical measurement datum
A measurement datum that is reported on a categorical scale
categorical measurement datum
Sarcopterygii
Sarcopterygii
length
length
A 1-D extent quality which is equal to the distance between two points.
Deuterostomia
Deuterostomia
specimen creation objective
A specimen creation objective is to obtain a material entity for potential use as an input during an investigation
specimen creation objective
cell culture
cell culture
a cell culture is a material entity consisting of a population of cells that is maintained in vitro
weight
A physical quality inhering in a bearer that has mass near a gravitational body.
weight
Coelomata
Coelomata
Mustelinae
Mustelinae
Euteleostomi
Euteleostomi
A RNA extraction is a nucleic acid extraction where the desired output material is RNA
RNA extraction
RNA extraction
Teleostomi
Teleostomi
mass
A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
mass
Mustela
Mustela
Mustela putorius
Mustela putorius
Mustela putorius furo
Mustela putorius furo
nucleic acid extraction
nucleic acid extraction
a material separation to recover the nucleic acid fraction of an input material
Murinae
Murinae
symptom
symptom
A quality of a patient that is observed by the patient or a processual entity experienced by the patient, either of which is hypothesized by the patient to be a realization of a disease.
Euarchontoglires
Euarchontoglires
Caniformia
Caniformia
Laurasiatheria
Laurasiatheria
Glires
Glires
material portioning
material portioning
a material processing in which the input substance is partitioned into a number of portions that are similar in composition.
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
female
female
Dinosauria
Dinosauria
data transformation
A data transformation is a process which produces output data from input data
data transformation
male
male
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
Eutheria
Eutheria
Influenza B virus
Influenza B virus
material processing
material processing
A planned process which results in physical changes in a specified input material
Saurischia
Saurischia
material component separation
a material processing in which components of an input material become segregated in space
material component separation
deoxyribonucleic acids
deoxyribonucleic acids
High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms.
specimen
specimen
A material entity that has the specimen role.
service provider role
service provider role
is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person
environmental material collection
environmental_material_collection is an acquisition where an object is taken from an environment and put into a storage container. Roles include, environment, thing collected, container, acquirer.
environmental material collection
ssRNA negative-strand viruses
ssRNA negative-strand viruses
Rodentia
Rodentia
morphology
morphology
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
size
size
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.
RNA-directed RNA polymerase activity
RNA-directed RNA polymerase activity
Chordata
Chordata
Influenzavirus A
Influenzavirus A
Influenzavirus B
Influenzavirus B
trophic quality
trophic quality
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
physical object quality
physical object quality
A quality which inheres in a continuant.
tarsometatarsus
The tarsometatarsus is a bone that is found in the lower leg of certain tetrapods, namely birds. It is formed from the fusion of several bones found in other types of animals, and homologous to the mammalian tarsal (ankle) and metatarsal (foot) bones. Despite this, the tarsometatarsus of birds is often referred to as just the tarsus or metatarsus.
tarsometatarsus
Influenzavirus C
Influenzavirus C
Mustelidae
Mustelidae
catalytic activity
catalytic activity
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Eukaryota
Hominidae
Hominidae
contact
Contact transmission is a direct transmission process during which the pathogen is transmitted from a reservoir, source or host to another host by kissing, skin-to-skin contact, sexual intercourse, or by contact with soil or vegetation containing the pathogen.
contact
Homo sapiens
Homo sapiens
Homo
Homo
biological sex
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
biological sex
Vertebrata
Vertebrata
Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
molecular entity
molecular entity
Archosauria
Archosauria
Viruses
Viruses
RNA-directed RNA polymerase complex
RNA-directed RNA polymerase complex
A protein complex that possesses RNA-directed RNA polymerase activity.
Archaea
alpha-sialidase activity
Catalysis of the hydrolysis of alpha-glycosidic linkages in oligo- or poly(sialic) acids.
alpha-sialidase activity
cloning vector role
cloning vector role
a vector role played by a small, self-replicating DNA or RNA molecule - usually a plasmid or chromosome - and realized in a process whereby foreign DNA or RNA is inserted into the vector during the process of cloning.
Muridae
Muridae
Influenza C virus
Influenza C virus
Cetartiodactyla
Cetartiodactyla
RNA polymerase complex
RNA polymerase complex
Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits.
a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation.
material supplier role
material supplier role
vehicle-borne ingestion
vehicle-borne ingestion
Vehicle-borne ingestion transmission is an indirect vehicle-borne transmission process during which the pathogen is indirectly transferred from a reservoir, source or host to another host by ingestion of fluids or foods or food products including: food, water, milk, or meat products.
phenotypic sex
phenotypic sex
vehicle-borne
Vehicle-borne transmission is an indirect transmission process during which the pathogen is indirectly transferred from a reservoir, source or host to another host by inanimate intermediary vehicle objects.
vehicle-borne
Investigation agent role is a role borne by a person or organization which is realized in a process that is part of an investigation in which an objective is achieved. These processes include: planning, overseeing, funding, reviewing.
investigation agent role
investigation agent role
A processual entity that realizes a plan which is the concretization of a plan specification.
planned process
planned process
hospitalization
TODO
hospitalization
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
auxotrophic
auxotrophic
health care encounter
health care encounter
A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role. The health care provider role and patient are realized during the health care encounter
A social process that has at least one human participant and that includes as parts the treatment, diagnosis, or prevention of disease or injury--or the following of instructions of another human for treatment, diagnosis, or prevention--of a participant in the process
health care process
health care process
Orthomyxoviridae
Orthomyxoviridae
treatment
A processual entity whose completion is hypothesized (by a healthcare provider) to alleviate the signs and symptoms associated with a disorder
treatment
DNA sequencing is a sequencing process which uses deoxyribonucleic acid as input and results in a the creation of DNA sequence information artifact using a DNA sequencer instrument.
DNA sequencing
DNA sequencing
cell
cell
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
droplet spread
droplet spread
Droplet spread transmission is a direct transmission process during which the pathogen is transmitted from a reservoir, source or host to another host by spray of aerosols over a short distance, spray from sneezing, coughing or talking.
Sauria
Sauria
Airborne transmission is an indirect transmission process during which the pathogen is indirectly transferred from a reservoir, source or host to another host while suspended in the air as dust.
airborne
airborne
protein complex
protein complex
Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or other small molecules.
Bilateria
Bilateria
sequencing assay
sequencing assay
the use of a chemical or biochemical means to infer the sequence of a biomaterial
Carnivora
Carnivora
Mus musculus
Mus musculus
extraction
A material separation in which a desired component of an input material is separated from the remainder
extraction
Sciurognathi
Sciurognathi
viability
viability
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
organism
organism
A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
time
time
A quality in which events occur in sequence.
Lobular organ which has as its parts alveoli connected to the tracheobronchial tree. Examples: There are only two instances, right lung and left lung.
Lung
Lung
protocol
a protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process.
protocol
RNA polymerase activity
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template.
RNA polymerase activity
Craniata
Craniata
A viral infectious disease that results_in infection, located_in respiratory tract, has_material_basis_in Influenzavirus A, has_material_basis_in Influenzavirus B, or has_material_basis_in Influenzavirus C, which are transmitted_by droplet spread of oronasal secretions during coughing, sneezing, or talking from an infected person. It is a highly contagious disease that affects birds and mammals and has_symptom chills, has_symptom fever, has_symptom sore throat, has_symptom runny nose, has_symptom muscle pains, has_symptom severe headache, has_symptom cough, and has_symptom weakness.
influenza
influenza
Mus
Mus
induced hemagglutination
induced hemagglutination
The clumping or clustering of red blood cells caused by certain viruses, antibodies, or other substances
molecular_function
molecular_function
Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
1-D extent
1-D extent
material combination
material combination
is a material processing with the objective to combine two or more material entities as input into a single material entity as output.
Suina
Suina
Eumetazoa
Eumetazoa
Metazoa
Metazoa
Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.
organelle
organelle
Homo/Pan/Gorilla group
Homo/Pan/Gorilla group
Muroidea
Muroidea
adipose tissue
Dense irregular connective tissue, which predominantly consists of adipocytes. Fat is stored in adipose tissue.
adipose tissue
physical quality
physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
Primates
Primates
Influenza A virus
Influenza A virus
Fungi/Metazoa group
Fungi/Metazoa group
cell fraction
cell fraction
A generic term for parts of cells prepared by disruptive biochemical techniques.
Haplorrhini
Haplorrhini
A time quality inhering in a bearer by virtue of how long the bearer has existed.
age
age