A severe acute respiratory syndrome-related coronavirus which is 1) bat-derived, 2) sharing 93.3% nucleotide identity with SARS-CoV-2, and 3) contains an insertion at the S1/S2 cleavage site in the spike protein. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://en.wikipedia.org/wiki/RmYN02 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 RmYN02 A sampling strategy in which individuals are chosen for investigation into a disease cluster or outbreak. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Cluster/Outbreak investigation https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z GRDI Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 The terms cluster and outbreak both describe the occurrence of new disease cases within a particular location and time period. The number of cases within a cluster are not necessarily greater than what is expected, however in an outbreak the number of cases does exceed the usual norm. In an outbreak the cases are confirmed to be epidemiologically linked while in a cluster an epidemiological connection is only suspected. Not all clusters are outbreaks, however each cluster needs to be investigated. [Source: https://covid19evidencereviews.saskhealthauthority.ca/en/permalink/coviddoc153] cluster/outbreak investigation strategy A sampling strategy in which individuals are sampled in the context of diagnostic testing. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Diagnostic testing https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z GRDI Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 diagnostic testing strategy A sampling strategy in which individuals are sampled in order to perform research. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Research https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z GRDI Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 research strategy A sampling strategy in which individuals are sampled for surveillance investigations. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Surveillance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z GRDI Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 surveillance strategy A surveillance sampling strategy in which baseline is established at the beginning of a study or project by the selection of sample units via random sampling. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Baseline surveillance (random sampling) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z random sampling Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 Such that each possible unit has a fixed and known or equal probability of selection. [Source: "Random Sample" (p.238) in Porta, M. (2014). A Dictionary of Epidemiology (6th ed.). Oxford University Press, Incorporated.] baseline surveillance strategy A surveillance sampling strategy in which an aspired outcome is explicity stated. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Targeted surveillance (non-random sampling) Target" (p.279) in Porta, M. (2014). A Dictionary of Epidemiology (6th ed.). Oxford University Press, Incorporated. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z non-random sampling Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 targeted surveillance strategy A targeted surveillance strategy which is considered important and/or urgent. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Priority surveillance project https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 priority surveillance project strategy A targeted surveillance strategy in which the aim is early detection of variants of concern (VoC) in individuals. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Screening for Variants of Concern (VoC) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z screening for VOC screening for VoC PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 screening for Variants of Concern strategy A priority surveillance strategy in which subsets of a defined population can be identified who are, have been, or in the future may be exposed or not exposed - or exposed in different degrees - to a disease of interest and are selected to under go repeat sampling over a defined period of time. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Longitudinal surveillance (repeat sampling of individuals) Cohort Study" (p.50) in Porta, M. (2014). A Dictionary of Epidemiology (6th ed.). Oxford University Press, Incorporated. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z repeat sampling of individuals Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 longitudinal surveillance strategy A priority surveillance strategy in which a population that previously tested positive for a disease of interest, and since confirmed to have recovered via a negative test, are monitored for positive test indication of re-infection with the disease of interest within a defined period of time. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Re-infection surveillance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 re-infection surveillance strategy A priority surveillance strategy in which individuals are monitored for investigation into vaccine escape, i.e., identifying variants that contain mutations that counteracted the immunity provided by vaccine(s) of interest. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Vaccine escape surveillance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 vaccine escape surveillance strategy A priority surveillance strategy in which individuals are selected if they have a travel history outside of the reporting region within a specified number of days before onset of symptoms. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Travel-associated surveillance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 travel-associated surveillance strategy A travel-associated surveillance strategy in which individuals are selected if they have an intranational travel history within a specified number of days before onset of symptoms. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Domestic travel surveillance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 domestic travel surveillance strategy A travel-associated surveillance strategy in which individuals are selected if they have a travel history outside of the reporting country in a specified number of days before onset of symptoms. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. International travel surveillance https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2020.25.37.2001641 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 international travel surveillance strategy An international travel-associated surveillance strategy in which individuals are selected if they have a travel history of crossing an international border via air travel or ground transport. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Surveillance of international border crossing by air travel or ground transport https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 surveillance of international border crossing by air travel or ground transport strategy An international travel-associated surveillance strategy in which individuals are selected if they have a travel history of crossing an international border via air travel. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Surveillance of international border crossing by air travel https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 surveillance of international border crossing by air travel strategy An international travel-associated surveillance strategy in which individuals are selected if they have a travel history of crossing an international border via ground transport. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Surveillance of international border crossing by ground transport https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 surveillance of international border crossing by ground transport strategy A travel-associated surveillance strategy in which individuals are selected if they have a travel history outside of the reporting country in a specified number of days before onset of symptoms. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Surveillance from international worker testing https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 surveillance from international worker testing strategy An outbreak investigation sampling strategy in which individuals are chosen for investigation into a disease outbreak that has connections to two or more jurisdictions. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Multi-jurisdictional outbreak investigation https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 multi-jurisdictional outbreak investigation strategy An outbreak investigation sampling strategy in which individuals are chosen for investigation into a disease outbreak that only has connections within a single jurisdiction. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Intra-jurisdictional outbreak investigation https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 intra-jurisdictional outbreak investigation strategy A research sampling strategy in which individuals are sampled in order to perform a viral passage experiment. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Viral passage experiment https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 viral passage experiment strategy A research sampling strategy in which samples are collected in order to test a method or protocol. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Protocol testing Protocol testing experiment https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 protocol testing strategy A device which is used to collect liquid samples. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 collection cup A device which is a soft, absorbent material mounted on one or both ends of a stick. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z GRDI Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 swab An aspiration process which involves putting a needle through the skin just above the pubic bone into the bladder to take a urine sample. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z suprapubic aspiration An aspiration process which collects tracheal secretions. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z tracheal aspiration An aspiration process which uses a vacuum source to remove a sample. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z vacuum aspiration A filtration process which removes solid particulates from the air via an air filtration device. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z air filtration The collection of bronchoalveolar lavage fluid (BAL) from the lungs. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z BAL bronchoalveolar lavage The administration and evacuation of small volumes of liquid through an orogastric tube to remove toxic substances within the stomach. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z gastric lavage A collecting specimen from organism process in which a salt water solution is taken into the oral cavity, rinsed around, and gargled before being deposited into an external collection device. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z mouth rinse and gargle saline gargle A specimen collection process in which a sample is collected by scraping a surface with a sterile sampling device. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z scraping A collecting specimen from organism process in which a skin site free of surface arterial flow is pierced with a sterile lancet, after a capillary blood droplet is formed a sample is captured in a capillary tupe. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z finger prick Antiviral treatment administered prior to the current regimen or test. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z prior antiviral treatment A collecting specimen from organism process in which fluid is added to the eye prior to sample collection, effectively "washing out" ocular surface molecules. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z washout tear collection The process of growing a virus in serial iterations. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z virus passage A secondary RNA extraction after performing reverse transcription polymerase chain reaction (RT-PCR). The desired output is RNA. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z RNA re-extraction (post reverse transcription-polymerase chain reaction) RNA re-extraction (post RT-PCR) 293 cells stably expressing the SARS-CoV receptor protein, angiotensin-converting enzyme 2 (ACE2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z 293/hACE2 cell line 293/ACE2 cell line Eptesicus fucus (big brown bat) kidney 3B cells. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Efk-3B clone 3B cell Efk3B cell Eptesicus fucus kidney 3B cell EFK3B cell line Normal human primary renal cortical epithelial cells. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z human renal cortical epithelial cell line HRCE cell line VeroE6 cells expressing the transmembrane serine protease TMPRSS2. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?ID=8668 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Vero E6/TMPRSS2 cell Vero-E6/TMPRSS2 cell VeroE6/TMPRSS2 cell line The condition of being treated as a patient in a hospital without admission to an intensive care unit (ICU). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Hospitalized (Non-ICU) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Hospitalized (non-intensive care units) hospitalized (non-ICU) datum The condition of being treated as a patient in a hospital intensive care unit (ICU). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Hospitalized (ICU) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Hospitalized (intensive care units) hospitalized (ICU) datum Separation of people with a contagious disease from population to reduce the spread of the disease. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Mechanical Ventilation https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7338113/ https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z medically isolated datum Medical isolation in a negative pressure environment: 6 to 12 air exchanges per hour, and direct exhaust to the outside or through a high efficiency particulate air filter. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Medically Isolated https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z medically isolated (negative pressure) datum An age group that stratifies the age of a case to be between 0 to 9 years old (inclusive). 0 - 9 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (0 - 9) An age group that stratifies the age of a case to be between 10 to 19 years old (inclusive). 10 - 19 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (10 - 19) An age group that stratifies the age of a case to be between 20 to 29 years old (inclusive). 20 - 29 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (20 - 29) An age group that stratifies the age of a case to be between 30 to 39 years old (inclusive). 30 - 39 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (30 - 39) An age group that stratifies the age of a case to be between 40 to 49 years old (inclusive). 40 - 49 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (40 - 49) An age group that stratifies the age of a case to be between 50 to 59 years old (inclusive). 50 - 59 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (50 - 59) An age group that stratifies the age of a case to be between 60 to 69 years old (inclusive). 60 - 69 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (60 - 69) An age group that stratifies the age of a case to be between 70 to 79 years old (inclusive). 70 - 79 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (70 - 79) An age group that stratifies the age of a case to be between 80 to 89 years old (inclusive). 80 - 89 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (80 - 89) An age group that stratifies the age of a case to be between 90 to 99 years old (inclusive). 90 - 99 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (90 - 99) An age group that stratifies the age of a case to be greater than or equal to 100 years old. 100+ https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin (100+) Age of host at the time of sampling, expressed as an age group in years. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z subject age at time of specimen collection bin Inability to arouse in response to one or more external stimuli. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Inability to arouse (inability to stay awake) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z inability to stay awake inability to arouse Persistent blue discoloration of the lips. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Cyanotic face (bluish face) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z bluish face cyanotic face Generalized bluish discoloration of the body and the visible mucous membranes, which occurs due to inadequate oxygenation secondary to conditions that lead to an increase in deoxygenated hemoglobin or presence of abnormal hemoglobin. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z central cyanosis Persistent blue discoloration of the lips. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Cyanotic lips (bluish lips) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z bluish lips cyanotic lips Bluish discoloration of the distal extremities (hands, fingertips, toes), and can sometimes involve circumoral and periorbital areas. Mucous membranes are generally not involved. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z peripheral cyanosis Fever that exceeds 38 degrees centigrade. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z fever (>=100.4°F) fever (>=38°C) Focal or diffuse areas of ill-defined, hazy, increased lung attenuation, which cause pulmonary vascular indistinctness, yet through which vessels can still be identified via high-resolution computed tomography or the conventional radiograph. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Ground Glass Opacities (GGO) PMID: 12465687 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z GGO ground glass opacities Abnormally low blood oxygen level without the presence of dyspnea/dyspnoea. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Silent hypoxemia https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397783/ https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z silent hypoxemia Inflammation of infection of the ear. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Otitis https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z otitis Fluid exuded from the pharynx posterior wall. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Pharyngeal exudate https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z pharyngeal exudate Inflammatory chilblain-like nodules on the hands and/or fingers. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Pseudo-chilblains on fingers (covid fingers) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z covid fingers pseudo-chilblains on fingers Inflammatory chilblain-like nodules on the feet and/or toes. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Pseudo-chilblains on toes (covid toes) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z covid toes pseudo-chilblains on toes Trauma to the cardiac muscle or valves. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://www.ebi.ac.uk/ols/ontologies/ncit/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FNCIT_C45430 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z cardiac injury A reflex action of the respiratory tract that is used to clear the upper airways, lasting for more than 8 weeks Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z chronic cough A persistent disease that affects the gastrointestinal tract. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z chronic gastrointestinal disease The period of time less than or equal to six weeks after labor and delivery. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z postpartum (≤6 weeks) The use of a drug for a reason other than which it was intended or in a manner or in quantities other than directed. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z drug abuse The use of an injection drug for a reason other than which it was intended or in a manner or in quantities other than directed. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z injection drug abuse An individual who is receiving or has received a transplant of a heart. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z cardiac transplant An individual who is receiving or has received a transplant of a liver. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z liver transplant A variant designation which is 1) a variant of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), 2) believed to have genetic mutations that increase binding affinity to human cells, 3) linked to rapid spread in human populations, and 4) is being monitored. Variant of Concern (VOC) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z VOC VoC PHA4GE Definition: A category used for indicating that a variant of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) containing genetic mutations believed to increase binding affinity to human cells and linked to rapid spread in human populations is being monitored. variant of concern (SARS-CoV-2) A variant designation which is 1) a variant of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), 2) demonstrated to have genetic mutations that increase binding affinity to human cells, 3) linked to rapid spread in human populations, and 4) is under surveillance. Variant of Interest (VOI) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z VOI PHA4GE Definition: A category used for indicating that a variant of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) containing genetic mutations demonstrated to increase binding affinity to human cells and linked to rapid spread in human populations is under surveillance. variant of interest (SARS-CoV-2) A disorder characterized by an arrhythmia with an above normal rate. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=21.09d&ns=ncit&code=C110938&key=n2078840696&b=1&n=null https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z tachyarrhythmia A disease process that results in acute hypoxia secondary to a rapid deterioration in respiratory status.Increased capillary permeability and changes in pressure gradients within the pulmonary capillaries and vasculature are mechanisms for which noncardiogenic pulmonary edema occurs. To differentiate from cardiogenic pulmonary edema, pulmonary capillary wedge pressure is not elevated and remains less than 18 mmHg. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z noncardiogenic pulmonary edema A clinical syndrome characterized by the acute onset of pulmonary edema following a significant central nervous system (CNS) insult. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z NPE neurogenic pulmonary edema An acute form of myocarditis, whose main characteristic is a rapidly progressive clinical course with the need for hemodynamic support. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z fulminant myocarditis A diagnosis of Kawasaki disease (KD) based on the fulfillment of a set of clinical signs including fever of five or more days' duration with at least four of the following five signs: (i) bilateral conjunctival injection, (ii) cervical lymphadenopathy, (iii) polymorphous skin rash, (iv) changes in the lips or oral mucosa, and (v) changes of the distal extremities.Usual laboratory findings in KD patients include elevated erythrocyte sedimentation rate and C-reactive protein, hypoalbuminemeia, elevated serum hepatic transaminases and leukocytosis with thrombocytosis noted later in the course of the illness. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z complete Kawasaki syndrome complete Kawasaki disease A diagnosis of Kawasaki disease (KD) when patients fail to meet “classic” clinical features but have laboratory findings usually associated with KD and no reasonable alternate diagnosis, they are said to have incomplete or atypical KD. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z incomplete Kawasaki syndrome incomplete Kawasaki disease A condition of liver damage that is characterized by coagulopathy with no signs of encephalopathy. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://doi.org/10.1016/j.aohep.2018.11.009 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z acute liver injury A lung injury that results from mechanical stress and strain that occur during tidal ventilation in the susceptible lung. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z VILI ventilation induced lung injury An injury in muscle tissue caused by bruising, spraining or laceration. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z muscle injury An organ dysfunction to such a degree that normal homeostasis cannot be maintained without external clinical intervention. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://en.wikipedia.org/wiki/Organ_dysfunction https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z organ failure A infection caused by staphylococcus bacteria, bearing the secondary infection role Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z If a secondary staphylococcus infection was identified during or after treatment of the primary infection. secondary staph infection A infection caused by streptococcal bacteria, bearing the secondary infection role Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z If a secondary streptococcal infection was identified during or after treatment of the primary infection. secondary strep infection A systemtic inflammatory response to infectious and/or non-fectious etiologies, resulting in life-threatening, generalized form of acute circulatory failure associated with inadequate oxygen utilization by the cells. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Descriptive of both infectious and non-infectious etiologies. hyperinflammatory shock A persistent form of cardiogenic shock that presents as persistent tissue hyoperfusion despite administration of adequote doses of vasoactive medications and treatmenft of the underlying aetiology. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z refractory cardiogenic shock A persistent form of cardiogenic shock that presents simultaneously with vasoplegic shock. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z refractory cardiogenic plus vasoplegic shock A vaccination status in which an individual has completed a full series of an authorized vaccine according to the regional health institutional guidance. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PHA4GE Definition: A category used for indicating that a variant of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) containing genetic mutations demonstrated to increase binding affinity to human cells and linked to rapid spread in human populations is under surveillance. fully vaccinated A vaccination status in which an individual has started but not yet fully completed a vaccine series authorized and administered according to the regional health institutional guidance. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z In general, people are considered partially vaccinated 2 weeks after their first dose in a single-dose or multi-dose vaccine series. partially vaccinated A vaccination status in which an individual has not completed or initiated a vaccine series authorized and administered according to the regional health institutional guidance. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z unvaccinated In general, people are considered not vaccinated if they have not received a single dose or have not yet completed the 2 weeks after their first dose in a single-dose or multi-dose vaccine series. not vaccinated A manufactured product which separates solids from fluids by adding a medium through which only a fluid can pass. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. http://purl.obolibrary.org/obo/NCIT_C41199 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 filter An extract which is the output of an extraction process in which messenger RNA molecules are isolated from a specimen. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. mRNA (messenger RNA) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z messenger RNA extract mRNA extract A DNA sequencer manufactured by the Illumina corporation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina sequencing instrument model A DNA sequencer manufactured by Solexa as one of its first sequencer lines, launched in 2006, and capable of sequencing 1 gigabase (Gb) of data in a single run. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina Genome Analyzer A DNA sequencer manufactured by the Illumina corporation using sequence-by-synthesis chemistry, and contains a HiScan Reader for sequencing and microarray-based analyses as well as an "SQ Module" to support microfluidics. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina HiScanSQ A DNA sequencer manufactured by the Illumina corporation using sequence-by-synthesis chemistry, enabling deep sequencing and high yield. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina HiSeq A DNA sequencer manufactured by the Illumina corporation using sequence-by-synthesis chemistry that oenabled sufficent depth and coverage to produce the first 30x human genome for $1000. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina HiSeq X A DNA sequencer manufactured by the Illumina corporation using sequence-by-synthesis chemistry that consists of a set of 5 HiSeq X Sequencing Systems. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina HiSeq X 5 Illumina HiSeq X Five A DNA sequencer that consists of a set of 10 HiSeq X Sequencing Systems. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina HiSeq X 10 Illumina HiSeq X Ten A DNA sequencer which is manufactured by the Illumina corporation, with a single flow cell and a throughput of up to 35-50 Gb per day. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina HiSeq 1500 A DNA sequencer manufactured by the Illumina corporation using sequence-by-synthesis chemistry that is lightweight. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina iSeq A DNA sequencer manufactured by the Illumina corporation using sequence-by-synthesis chemistry that is lightweight and has an output capacity between 144MB-1.2GB. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina iSeq 100 A DNA sequencer manufactured by the Illunina corporation using sequence-by-synthesis chemistry that has an output capacirty of 6 Tb and 20 billion reads in dual flow cell mode. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina NovaSeq A DNA sequencer which is manufactured by the Illumina corporation, with two flow cells and an output of up to 6000 Gb (32-40 B reads per run). The sequencer utilizes synthesis technology and patterned flow cells to optimize throughput and even spacing of sequencing clusters. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina NovaSeq 6000 A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and has an output capacity of 1.65-7.5 Gb. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina MiniSeq A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and has an output capacity of 1.65-7.5 Gb. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina NextSeq A DNA sequencer which is a desktop sequencer ideal for smaller-scale studies manufactured by the Illumina corporation. It supports sequencing of single, long or short insert paired end clone libraries relying on sequencing by synthesis technology. The 550 is an upgrade on the 500 model. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina NextSeq 550 A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and has an output capacity of 30-360 Gb. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Illumina NextSeq 2000 A DNA sequencer manufactured by the Pacific Biosciences corporation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Pacific Biosciences sequencing instrument model A DNA sequencer manufactured by the Pacific Biosciences corporation which utilizes “SMRT Cells” for single-molecule real-time sequencing. The RS was the first model made by the company. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PacBio RS A DNA sequencer built upon single molecule real-time sequencing technology, optimized for generation with long reads and high consensus accuracy, and manufactured by the Pacific Biosciences corporation Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PacBio Sequel A DNA sequencer built upon single molecule real-time sequencing technology, optimized for generation of highly accurate ("HiFi") long reads, and which is manufactured by the Pacific Biosciences corporation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PacBio Sequel II A DNA sequencer manufactured by the Ion Torrent corporation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Ion Torrent sequencing instrument model A DNA sequencer manufactured by the Ion Torrent corporation which utilizes Ion semiconductor sequencing and has an output capacity of 300 MB - 1GB. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Ion Torrent PGM A DNA sequencer manufactured by the Ion Torrent corporation which utilizes Ion semiconductor sequencing and has an output capacity of up to 15 Gb. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Ion Torrent Proton A DNA sequencer manufactured by the Ion Torrent corporation which utilizes Ion semiconductor sequencing and requires only a small amount of input material while producing data faster than the S5 model. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Ion Torrent S5 XL A DNA sequencer manufactured by the Ion Torrent corporation which utilizes Ion semiconductor sequencing and requires only a small amount of input material. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Ion Torrent S5 A DNA sequencer manufactured by the Oxford Nanopore corporation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Oxford Nanopore sequencing instrument model A DNA sequencer that is manufactured by the Oxford Nanopore Technologies corporation, that can run and analyze up to five individual flow cells producing up to 150 Gb of data per run. The sequencer produces real-time results and utilizes nanopore technology with the option of running the flow cells concurrently or individual Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Oxford Nanopore GridION A portable DNA sequencer which is manufactured by the Oxford Nanopore Technologies corporation, that uses consumable flow cells producing up to 30 Gb of DNA sequence data per flow cell. The sequencer produces real-time results and utilizes nanopore technology with up to 512 nanopore channels in the sensor array. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Oxford Nanopore MinION A DNA sequencer that is manufactured by the Oxford Nanopore Technologies corporation, capable of running up to 48 flow cells and producing up to 7.6 Tb of data per run. The sequencer produces real-time results and utilizes Nanopore technology, with each flow cell allowing up to 3,000 nanopores to be sequencing simultaneously. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Oxford Nanopore PromethION A DNA sequencer manufactured by the BGI Genomics corporation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z BGI Genomics sequencing instrument model A DNA sequencer manufactured by the BGI Genomics corporation that utilizes Probe-Anchor Synthesis (cPAS) chemistry and "DNA Nanoballs". Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z BGI Genomics BGISEQ-500 A DNA sequencer manufactured by the MGI corporation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z MGI sequencing instrument model A high throughput DNA sequencer manufactured by the MGI corporation with an output capacity of 1~6TB of data per day. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z MGI DNBSEQ-T7 A DNA sequencer manufactured by the MGI corporation with an output capacity of 55GB~1440GB per run. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z MGI DNBSEQ-G400 A DNA sequencer manufactured by the MGI corporation with an outout capacity of 55GB~330GB per run, which enables faster sequencing than the DNBSEQ-G400. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z MGI DNBSEQ-G400RS FAST A DNA sequencer manufactured by the MGI corporation with an output capacity of 10～150 GB per run and enables different read lengths. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z MGI DNBSEQ-G50 A gene encoding the envelope protein of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf4 gene (SARS-CoV-2) E gene (SARS-CoV-2) A gene encoding the membrane glycoprotrein M protein of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf5 gene (SARS-CoV-2) M gene (SARS-CoV-2) A gene encoding the nucleocapsid phosphoprotein of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf9 gene (SARS-CoV-2) N gene (SARS-CoV-2) A gene encoding the Spike protein of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf2 gene (SARS-CoV-2) Spike gene (SARS-CoV-2) A gene encoding the replicase polyprotein 1ab of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z rep gene (SARS-CoV-2) orf1ab gene (SARS-CoV-2) A gene encoding the polyprotein 1a of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z pp1a gene (SARS-CoV-2) orf1a gene (SARS-CoV-2) A gene encoding the nonstructural protein 11 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp11 gene (SARS-CoV-2) A gene encoding the nonstructural protein 1 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp1 gene (SARS-CoV-2) A gene encoding the nonstructural protein 2 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp2 gene (SARS-CoV-2) A gene encoding the nonstructural protein 3 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp3 gene (SARS-CoV-2) A gene encoding the nonstructural protein 4 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp4 gene (SARS-CoV-2) A gene encoding the nonstructural protein 5 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp5 gene (SARS-CoV-2) A gene encoding the nonstructural protein 6 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp6 gene (SARS-CoV-2) A gene encoding the nonstructural protein 7 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp7 gene (SARS-CoV-2) A gene encoding the nonstructural protein 8 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp8 gene (SARS-CoV-2) A gene encoding the nonstructural protein 9 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp9 gene (SARS-CoV-2) A gene encoding the nonstructural protein 10 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp10 gene (SARS-CoV-2) A gene encoding the RNA-dependent RNA polymerase (RdRp) of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp12 gene (SARS-CoV-2) RdRp gene (SARS-CoV-2) A gene encoding the helicase (hel) of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp13 gene (SARS-CoV-2) hel gene (SARS-CoV-2) A gene encoding the nonstructural protein 14 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp14 gene (SARS-CoV-2) exoN gene (SARS-CoV-2) A gene encoding the nonstructural protein 15 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp15 gene (SARS-CoV-2) A gene encoding the nonstructural protein 16 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nsp16 gene (SARS-CoV-2) A gene encoding the viroporin ORF3a of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf3a gene (SARS-CoV-2) A gene encoding the polyprotein ORF3b of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf3b gene (SARS-CoV-2) A gene encoding the nonstructural protein 6 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z ns6 gene (SARS-CoV-2) orf6 gene (SARS-CoV-2) A gene encoding a transmembrane protein of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf7a gene (SARS-CoV-2) A gene encoding the polyprotein ORF7b of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z ns7b gene (SARS-CoV-2) orf7b gene (SARS-CoV-2) A gene encoding the nonstructural protein 8 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z ns8 gene (SARS-CoV-2) orf8 gene (SARS-CoV-2) A gene encoding the viral accessory protein ORF9b of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf9b gene (SARS-CoV-2) A gene encoding the membrane-associated protein ORF9c of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf9c gene (SARS-CoV-2) A gene encoding the polyprotein ORF10 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf10 gene (SARS-CoV-2) A gene encoding the uncharacterized protein ORF14 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z orf14 gene (SARS-CoV-2) A genomic region that is untranslated at the 5' end of the genome of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. SARS-COV-2 5' UTR https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z SARS-CoV-2 5' untranslated region SARS-CoV-2 5'-UTR 5' UTR (SARS-CoV-2) A process occuring within or in the vicinity of a human with a confirmed case of COVID-19 that exposes the recipient organism to SARS-CoV-2. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Contact with Known COVID-19 Case https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z contact with known COVID19 case contact with known COVID-19 case exposure process A process occuring within or in the vicinity of a human patient that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Contact with Patient https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z contact with patient exposure process A process occuring within or in the vicinity of a human with a probable case of COVID-19 that exposes the recipient organism to SARS-CoV-2. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Contact with Probable COVID-19 Case https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z contact with probable COVID19 case contact with probable COVID-19 case exposure process A process occuring within or in the vicinity of a human with acute respiratory illness that exposes the recipient organism to said acute respiratory illness. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Contact with Person with Acute Respiratory Illness https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z contact with person with acute respiratory illness exposure process A process occuring within or in the vicinity of a human with a fever and/or cough that exposes the recipient organism to the causative agent. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Contact with Person with Fever and/or Cough https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z contact with person with fever and/or cough exposure process A process occuring within or in the vicinity of a human, who recently travelled, that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Contact with Person who Recently Travelled https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z contact with person who recently travelled exposure process A process occuring within or in the vicinity of a human residential environment that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Occupational, Residency or Patronage Exposure https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z occupational, residency or patronage exposure process A process occuring within or in the vicinity of an animal rescue facility that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Animal Rescue https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z animal rescue exposure process A process occuring within or in the vicinity of a human childcare environment that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Childcare https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z childcare exposure process A process occuring within or in the vicinity of a human daycare environment that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Daycare https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z daycare exposure process A process occuring within or in the vicinity of a human nursery that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Nursery https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z nursery exposure process A process occuring within or in the vicinity of a community service centre that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Community Service Centre https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z community service centre exposure process A process occuring within or in the vicinity of a correctional facility that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Correctional Facility https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z correctional facility exposure process A process occuring within or in the vicinity of a dormitory that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Dormitory https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z dormitory exposure process A process occuring within or in the vicinity of a first nations reserve that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. First Nations Reserve https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z first nations reserve exposure process A process occuring within or in the vicinity of a fgroup home that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Funeral Home https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z funeral home exposure process A process occuring within or in the vicinity of a group home that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Group Home https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z group home exposure process A process occuring within or in the vicinity of a healthcare environment that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Healthcare Setting https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z healthcare setting exposure process A process occuring within or in the vicinity of an ambulance that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Ambulance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z ambulance exposure process A process occuring within or in the vicinity of an acute care facility that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Acute Care Facility https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z acute care facility exposure process A process occuring within or in the vicinity of a medical clinic that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Clinic https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z clinic exposure process A process occuring within or in the vicinity of a community health centre that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Community Health Centre https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z community health centre exposure process A process occuring within or in the vicinity of an emergency department that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Emergency Department https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z emergency department exposure process A process occuring within or in the vicinity of an ICU that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. ICU https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z ICU intensive care unit exposure process A process occuring within or in the vicinity of a hospital ward that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Ward https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z ward exposure process A process occuring within or in the vicinity of a long-term care facility that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Long-Term Care Facility https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z LTC facility long-term care facility exposure process A process occuring within or in the vicinity of a pharmacy that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Pharmacy https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z pharmacy exposure process A process occuring within or in the vicinity of a physician's office that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Physician's Office https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z physician's Office exposure process A process occuring within or in the vicinity of a household that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Household https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z household exposure process A process occuring that exposes the recipient organism to a material entity as a consequence of said organism having insecure housing. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Insecure Housing (Homeless) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z homeless insecure housing exposure process A process occuring within or in the vicinity of a human occupational environment that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Occupational Exposure https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z occupational exposure process A process occuring within or in the vicinity of an office that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Worksite https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z worksite exposure process A process occuring outdoors that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Outdoors https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z outdoors exposure process A process that exposes the recipient organism to a material entity as a consequence of hiking. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Hiking Trail https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z hiking trail exposure process A process occuring within or in the vicinity of a ski resort that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Ski Resort https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z ski resort exposure process A directive information entity which realizes sample strategy specifications. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z sampling strategy specification A process occuring within or in the vicinity of a place of worship that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Place of Worship https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z place of worship exposure process A process occuring within or in the vicinity of a church that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Church https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z church exposure process A process occuring within or in the vicinity of a mosque that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Mosque https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z mosque exposure process A process occuring within or in the vicinity of a temple that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Temple https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z temple exposure process A process occuring within or in the vicinity of a school that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. School https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z school exposure process A process occuring within or in the vicinity of a temporary residence that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Temporary Residence https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z temporary residence exposure process A process occuring within or in the vicinity of a homeless shelter that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Homeless Shelter https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z homeless shelter exposure process A process occuring within or in the vicinity of a hotel exposure that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Hotel https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z hotel exposure process A process occuring within or in the vicinity of a veterinary facility that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Veterinary Care Clinic https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z veterinary care clinic exposure process A process occuring as a result of travel that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Travel Exposure https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z travel exposure process A process occuring within or in the vicinity of a cruise ship that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Travelled on a Cruise Ship https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z travelled on a cruise ship exposure process A process occuring within or in the vicinity of an airplane that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Travelled on a Plane https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z travelled on a plane exposure process A process occuring within or in the vicinity of ground transport that exposes the recipient organism to a material entity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Travelled on Ground Transport https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z travelled on ground transport exposure process An absence of antiviral treatment administered prior to the current regimen or test. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z no prior antiviral treatment An infection that occurred within a host prior to the current infection. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z prior infection A process occuring that exposes the recipient organism to a material entity. Other Exposure Setting https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z other exposure setting exposure process An absence of infection that occurred within a host prior to the current infection. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z no prior infection A type of social behavior in which a sufficent number of humans gather together such that there is potential strain on community resources. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Mass Gathering https://en.wikipedia.org/wiki/Mass_gathering https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z mass gathering exposure datum A human mass gathering in which humans meet at an arranged place and time in order to discuss or engage in some common interest. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Convention https://en.wikipedia.org/wiki/Convention_(meeting) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z convention exposure datum A human social gathering in which a group of humans formally assemble for a specific purpose. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Convocation https://en.wikipedia.org/wiki/Convocation https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z convocation exposure datum A human social gathering at which humans gather for a planned or social occasion to carry out activities relevant to agriculture. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Agricultural Event https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z agricultural event exposure datum A type of social behavior in which a collection of humans intentionally gathers together on a temporary basis to engage in a religious activity. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Religious Gathering https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z religious gathering exposure datum A human eucharistic liturgical gathering in which humans perform public worship. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Mass https://en.wikipedia.org/wiki/Mass_(liturgy) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z mass exposure datum A human social event in which human family members congregate. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Family Gathering https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z family gathering exposure datum A human social event in which many human members of an extended family congregate. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Family Reunion https://en.wikipedia.org/wiki/Family_reunion https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z family reunion exposure datum A human social event in which humans gather for a ceremony connected with the final disposition of a corpse, such as a burial or cremation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Funeral https://en.wikipedia.org/wiki/Funeral https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z funeral exposure datum Contact via airborne transmission or contact with contaminated surfaces. A type of contact in which an individual does not come in direct contact with a source of infection. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z indirect contact A type of indirect contact where an individual sustains unprotected exposure by being within 6 feet of an infected individual over a sustained period of time. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z face-to-face contact close indirect contact A type of indirect contact where an individual may at the same location at the same time as a positive case; however, they may have been there only briefly, or it may have been a location that carries a lower risk of transmission. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z casual indirect contact A role inhering in a person that is realized when the bearer is present on a given occasion or at a given place. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Attendee https://www.merriam-webster.com/dictionary/attendee https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z attendee role A role inhering in a person that is realized when the bearer travels in a vehicle but bears little to no responsibility for vehicle operation nor arrival at its destination. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Passenger https://en.wikipedia.org/wiki/Passenger https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z passenger role A role inhering in a person that is realized when the bearer maintains residency in a given place. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Resident https://en.wikipedia.org/wiki/Resident https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z resident role A role inhering in a person that is realized when the bearer pays a visit to a specific place or event. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Visitor https://en.wikipedia.org/wiki/Resident https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z visitor role A role inhering in a person that is realized when the bearer enters into any service of their own free will. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Volunteer https://en.wiktionary.org/wiki/visitor https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z volunteer role A role inhering in a person that is realized when the bearer performs labor for a living. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Work https://en.wiktionary.org/wiki/volunteer https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z work role A role inhering in a person that is realized when the bearer is engaged in administration or administrative work. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Administrator https://en.wiktionary.org/wiki/worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z administrator role A role inhering in a person that is realized when the bearer is among the first to arrive at the scene of an emergency and has specialized training to provide assistance. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. First Responder https://en.wikipedia.org/wiki/First_responder https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z first responder role A role inhering in a person that is realized when the bearer is a rescuer extensively trained in firefighting. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Firefighter https://en.wikipedia.org/wiki/Firefighter https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z firefighter role A role inhering in a person that is realized when the bearer is a healthcare professional who responds to emergency calls for medical help outside of a hospital. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Paramedic https://en.wikipedia.org/wiki/Paramedic https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z paramedic role A role inhering in a person that is realized when the bearer is a warranted law employee of a police force. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Police Officer https://en.wikipedia.org/wiki/Police_officer https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z police officer role A role inhering in a person that is realized when the bearer is an individual who performs cleaning duties and/or is responsible for the supervision of cleaning staff. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Housekeeper https://en.wikipedia.org/wiki/Housekeeper_(domestic_worker) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z housekeeper role A role inhering in a person that is realized when the bearer is an employee that performs labor in a kitchen. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Kitchen Worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z kitchen worker role A role inhering in a person that is realized when the bearer is an employee that performs labor in a laboratory. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Laboratory Worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z laboratory worker role A role inhering in a person that is realized when the bearer works to help another person complete their daily activities. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Personal Care Aid https://www.careerexplorer.com/careers/personal-care-aide/#:~:text=A%20personal%20care%20aide%20is,as%20in%2Dhome%20caretakers). https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z personal care aide role personal care aid role A role inhering in a person that is realized when the bearer is a health professional who specializes in dispensing prescription drugs at a healthcare facility. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Pharmacist https://en.wiktionary.org/wiki/pharmacist https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z pharmacist role A role inhering in a person that is realized when the bearer is a professional who practices veterinary medicine. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Veterinarian https://en.wikipedia.org/wiki/Veterinarian https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z veterinarian role A role inhering in a person that is realized when the bearer is in a state of being acquainted with a person. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Acquaintance of case https://en.wiktionary.org/wiki/acquaintance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z acquaintance role A role inhering in a person that is realized when the bearer is a relative of the case. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Relative of case https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z relative role A role inhering in a person that is realized when the bearer is a person younger than the age of majority. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Child of case https://en.wikipedia.org/wiki/Child https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z child role A role inhering in a person that is realized when the bearer is a caregiver of the offspring of their own species. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Parent of case https://en.wikipedia.org/wiki/Parent https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z guardian of case role parent of caserole parent-guardian role A role inhering in a person that is realized when the bearer is the male parent of a child. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Father of case https://en.wikipedia.org/wiki/Father https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z father role A role inhering in a person that is realized when the bearer is the female parent of a child. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Mother of case https://en.wikipedia.org/wiki/Mother https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z mother role A role inhering in a person that is realized when the bearer is a significant other in a marriage, civil union, or common-law marriage. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Spouse of case https://en.wikipedia.org/wiki/Spouse https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z spouse role A variant surveillance strategy in which a sample is sequenced because the individual from which the sample is derived has a known epidemiological link to a variant case. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Sample has epidemiological link to Variant of Concern (VoC) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z sample has epidemiological link to VoC PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 sample has epidemiological link to Variant of Concern strategy A variant surveillance strategy in which a sample is sequenced because the individual from which the sample is derived has a known epidemiological link to an Omicron variant case. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Sample has epidemiological link to Omicron Variant https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 sample has epidemiological link to Omicron variant strategy A domestic travel-associated surveillance strategy in which individuals are selected if their travel occurred within a state/province within a nation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Interstate/ interprovincial travel surveillance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 interstate/ interprovincial travel surveillance strategy A domestic travel-associated surveillance strategy in which individuals are selected if their travel occurred between states/provinces within a nation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Intra-state/ intra-provincial travel surveillance https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 intra-state/ intra-provincial travel surveillance strategy A variant designation which is 1) a variant of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), 2) containing genetic mutates that may increase binding affinity to human cells, 3) linked to rapid spread in human populations, 4) is being monitored, and 5) denoted as a lower risk than a Variant of Interest (VOI). Variant Under Monitoring (VUM) https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z VBM VUM Variant Being Monitored PHA4GE Definition: A category used for indicating that a variant of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) containing genetic mutations that may increase binding affinity to human cells and linked to rapid spread in human populations is being monitored. This category denotes less risk than a Variant of Interest (VOI). variant under monitoring (SARS-CoV-2) A specimen datum which describes the collection, isolate production, sequencing, or storage of specimen material or data. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z specimen processing An organism datum which contains additional contextual details regarding the health or disease status of a host at the time of sample collection. 2022-01-19T18:23:15.862Z host health status details at time of specimen collection An infection detail datum which is used for classifying a variant of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), determined by the risk it poses based on available scientific evidence. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z variant designation (SARS-CoV-2) A material entity encoding a genomic region of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z SARS-CoV-2 genomic region A data item that describes an event in which exposure to a stressor may have occurred. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z exposure datum A process in which a recipient organism is exposed to a material entity. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z exposure process A patient as host datum which indicates the vaccination status of the patient. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z vaccination status A genomic region encoding a gene of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z SARS-CoV-2 gene A role inhering in a person that is realized when the bearer is an employee that performs labor in a healthcare setting. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Healthcare Worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z healthcare worker role A role inhering in a person that is realized when the bearer is an employee that performs labor which rotates according to a schedule. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Rotational Worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z rotational worker role A role inhering in a person that is realized when the bearer is an employee that performs labor according to a seasonal schedule. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Seasonal Worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z seasonal worker role A sampling strategy in which stored samples from past events are sequenced. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Retrospective sequencing https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-02-25T05:13:49.123Z Monkeypox Monkeypox-International PHA4GE SARS-CoV-2 CanCOGeN SARS-CoV-2 retrospective sequencing strategy A type of contact in which an individual comes in contact with an infected person, either directly or indirectly. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-02-28T05:08:07.274Z contact with infected individual A process occuring within or in the vicinty of a the individual home where the patient or client is living and health care or supportive care is being being delivered, as opposed to care provided in group accommodations like clinics or nursing home. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Community Healthcare (At-Home) Setting https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z at-home community healthcare exposure process A mass gathering event where the primary emphasis is on recreation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Recreational Event https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z CanCOGeN SARS-CoV-2 recreational event datum A recreational event where the primary emphasis is on a concert performance. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Concert https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z CanCOGeN SARS-CoV-2 concert event datum A recreational event where the primary emphasis is a sporting deemonstration or athletic competition. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Sporting Event https://www.lawinsider.com/dictionary/sporting-and-recreational-event#:~:text=Related%20Definitions&text=Sporting%20and%20Recreational%20Event%20means,yoga%2C%20and%20other%20exercise%20gatherings. https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z CanCOGeN SARS-CoV-2 sporting event datum A role inhering in a person that is realized when the bearer a professional caregiver that provides health care or supportive care in the individual home where the patient or client is living, as opposed to care provided in group accommodations like clinics or nursing home. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Community Healthcare Worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2022-01-19T18:23:15.862Z community healthcare worker A role inhering in a person that is realized when the bearer is engaged in child care or education work. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Child Care/Education Worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z CanCOGeN SARS-CoV-2 child care or education worker A role inhering in a person that is realized when the bearer is engaged in operations and services that are essential to ensure the continuity of critical infrastructure operations. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Essential Worker http://purl.obolibrary.org/obo/NCIT_C179411 https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z CanCOGeN SARS-CoV-2 essential worker A role inhering in a person that is realized when the bearer is an employee that performs labor internationally. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. International worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z CanCOGeN SARS-CoV-2 international worker A role inhering in a person that is realized when the bearer is engaged in transportation. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Transport Worker https://www.lawinsider.com/dictionary/transportation-worker https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z CanCOGeN SARS-CoV-2 transport worker A transport worker role inhering in a person that is realized when the bearer is the driver of a transport truck. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Transport Truck Driver https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z CanCOGeN SARS-CoV-2 transport truck driver A role inhering in a person that is realized when the bearer is a sexual partner of the case. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Sexual partner of case https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z sexual partner role A process occuring within or in the vicinity of a human with a confirmed case of COVID-19 that exposes the recipient organism to Monkeypox. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Contact with Known Monkeypox Case https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z contact with known Monkeypox case Monkeypox-International Monkeypox contact with known Monkeypox case exposure process A process occuring within or in the vicinity of a human with a probable case of COVID-19 that exposes the recipient organism to Monkeypox. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. Contact with Probable Monkeypox Case https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-8844-9165 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z contact with probable Monkeypox case Monkeypox-International Monkeypox contact with probable Monkeypox case exposure process A sampling strategy in which environments are sampled in the context of testing for the presence of, or change in the levels of, chemicals, pathogens or other phenomena. Environmental testing 2023-01-23T00:42:19.315Z GRDI environmental testing strategy A sampling strategy in which individuals are sampled in the context of experiments or observations performed as part of clinical research. Clinical trial 2023-01-23T00:42:19.315Z GRDI clinical trial strategy A sampling strategy in which samples are taken during real-life experiments which test directly whether proposed interventions actually work. Field experiment 2023-01-23T00:42:19.315Z GRDI field experiment strategy A data item which is a statement confirming that quality control processes were carried out and no quality issues were detected. no quality control issues identified https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag Example: This statement may be used in conjunction with the quality control determination statement "sequence passed quality control" to confirm that no issues were identified. It is possible that a sequence may pass QC but still have some issues worthy of noting e.g. novel indel detected. Note: quality control here refers to quality of the raw reads, consensus sequence or assembly, not the qaulity of analytical results e.g. lineage assignment. no quality control issues identified datum A data item which is a statement confirming that quality control processes were carried out and that the sequence met the assessment criteria. sequence passed quality control https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag Example: Use this statement to indicate that quality control processes were carried out and that the sequence met the assessment criteria. Note: quality control here refers to quality of the raw reads, consensus sequence or assembly, not the qaulity of analytical results e.g. lineage assignment. sequence passed quality control datum A data item which is a statement confirming that quality control processes were carried out and that the sequence did not meet the assessment criteria. sequence failed quality control https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag Example: Use this statement to indicate that quality control processes were carried out and that the sequence failed to meet the assessment criteria. Note: quality control here refers to quality of the raw reads, consensus sequence or assembly, not the qaulity of analytical results e.g. lineage assignment. sequence failed quality control datum A data item which is a statement confirming that quality control processes were carried out and that the sequence did not meet the assessment criteria, however the issues detected were minor. minor quality control issues identified https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag Example: This statement may be used in conjunction with the quality control determination statement "sequence failed quality control" to communicate that the reasons why the sequence did not meet the assessment criteria. Minor issues may include phenomena that the analyst should review e.g. amplicons detected in the negative control sequence or more mutations than expected based on the reference sequence. The details of the issues can be described in the "quality control details" field. Note: quality control here refers to quality of the raw reads, consensus sequence or assembly, not the qaulity of analytical results e.g. lineage assignment. minor quality control issues identified datum A data item which is a statement confirming that quality control processes were carried out however it is unclear whether the sequence meets the assessment criteria and the assessment requires review. sequence flagged for potential quality control issues https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag Example: This statement may be used in conjunction with other quality control determination statements to indicate potential sequence quality issues. Note: quality control here refers to quality of the raw reads, consensus sequence or assembly, not the qaulity of analytical results e.g. lineage assignment. sequence flagged for potential quality control issues datum A data item which is a statement confirming that quality control processes have not been carried out. quality control not performed https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag Example: Use this statement to indicate that quality control processes have not been performed. Note: quality control here refers to quality of the raw reads, consensus sequence or assembly, not the qaulity of analytical results e.g. lineage assignment. quality control not performed datum A data item that describes sequence data that does not meet quality control thresholds. low quality sequence https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag low quality sequence datum A data item that describes sequence data that contains reads from unintended targets (e.g. other organisms, other samples) due to contamination so that it does not faithfully represent the genetic information from the biological source. sequence contaminated https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag sequence contaminated datum A data item that describes sequence data in which the entire length of the genome is not sufficiently sequenced (low breadth of coverage), or particular positions of the genome are not sequenced a prescribed number of times (low depth of coverage). low average genome coverage https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag low average genome coverage datum A data item that describes sequence data in which the entire length of the genome is not sufficiently sequenced (low breadth of coverage). low percent genome captured https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag low percent genome captured datum A data item that describes average sequence read lengths that are below the expected size range given a particular sequencing instrument, reagents and conditions. read lengths shorter than expected https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag read lengths shorter than expected datum A data item that describes sequence data containing errors generated during the polymerase chain reaction (PCR) amplification process during library generation (e.g. mutations, altered read distribution, amplicon dropouts). sequence amplification artifacts https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag sequence amplification artifacts datum A data item that describes sequence data containing more errors or undetermined bases (noise) than sequence representing the biological source (signal). low signal to noise ratio https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag low signal to noise ratio datum A data item that describes sequence data that contains a lower than expected number of mutations that are usually observed in the reference sequence. low coverage of characteristic mutations https://orcid.org/0000-0002-1107-9135 https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z PHA4GE QC Tag low coverage of characteristic mutations datum A sampling strategy in which individuals and/or materials are sampled for surveillance performed for research purposes. Survey study 2023-01-23T00:42:19.315Z GRDI survey study https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z quality control datum A role inhering in a person that is realized when the bearer is engaged in child care work. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z childcare worker role A role inhering in a person that is realized when the bearer is engaged in education work. Planned Obsolescence: this term is a placeholder for a term requested in another ontology. Once the appropriate ontology term is available, this term’s identifier will be obsoleted with a “term replaced by” id of the other term. https://orcid.org/0000-0002-9578-0788 2023-01-23T00:42:19.315Z education worker role