<?xml version="1.0"?>
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xml:base="http://purl.obolibrary.org/obo/ico.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:cito="http://purl.org/spar/cito/"
xmlns:doap="http://usefulinc.com/ns/doap#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:rdfs1="rdfs:"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ico.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ico/releases/2025-03-15/ico.owl"/>
<dc:contributor xml:lang="en">Anna Maria Masci</dc:contributor>
<dc:contributor xml:lang="en">Chris Stoeckert</dc:contributor>
<dc:contributor xml:lang="en">Cui Tao</dc:contributor>
<dc:contributor xml:lang="en">Helena Ellis</dc:contributor>
<dc:contributor xml:lang="en">Jian Guan</dc:contributor>
<dc:contributor xml:lang="en">Jihad Obeid</dc:contributor>
<dc:contributor xml:lang="en">Jonathan Bona</dc:contributor>
<dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
<dc:contributor xml:lang="en">William Duncan</dc:contributor>
<dc:creator xml:lang="en">Alla Karnovsky</dc:creator>
<dc:creator xml:lang="en">Asiyah Yu Lin</dc:creator>
<dc:creator xml:lang="en">Christoph Brochhausen</dc:creator>
<dc:creator xml:lang="en">Cooper Stansbury</dc:creator>
<dc:creator xml:lang="en">Elizabeth Eisenhauer</dc:creator>
<dc:creator xml:lang="en">Elizabeth Umberfield</dc:creator>
<dc:creator xml:lang="en">Frank Manion</dc:creator>
<dc:creator xml:lang="en">J. Neil Otte</dc:creator>
<dc:creator xml:lang="en">Jie Zheng</dc:creator>
<dc:creator xml:lang="en">Jonathan Vajda</dc:creator>
<dc:creator xml:lang="en">Kathleen Ford</dc:creator>
<dc:creator xml:lang="en">Marcy Harris</dc:creator>
<dc:creator xml:lang="en">Yongqun "Oliver" He</dc:creator>
<dc:description xml:lang="en">The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.</dc:description>
<dc:title xml:lang="en">Informed Consent Ontology (ICO)</dc:title>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<rdfs:comment xml:lang="en">Terms were identified from a sample of informed consent templates, and definitions were selected based on concordance between the defintion and the use of the term in the source informed consent template document. We preferentially selected defintioins from the NCI thesuarus.</rdfs:comment>
<rdfs:seeAlso rdf:resource="https://github.com/ICO-ontology/ICO"/>
<owl:versionInfo>2025-03-15</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
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<!-- http://protege.stanford.edu/plugins/owl/protege#defaultLanguage -->
<owl:AnnotationProperty rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
<!-- http://protege.stanford.edu/plugins/owl/protege#readOnly -->
<owl:AnnotationProperty rdf:about="http://protege.stanford.edu/plugins/owl/protege#readOnly"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000179 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000179">
<obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.</obo:IAO_0000115>
<obo:IAO_0000232 xml:lang="en">Really of interest to developers only</obo:IAO_0000232>
<rdfs:label xml:lang="en">BFO OWL specification label</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000180 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000180">
<obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2</obo:IAO_0000115>
<obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">Really of interest to developers only</obo:IAO_0000232>
<rdfs:label xml:lang="en">BFO CLIF specification label</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/DUO_0000041 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/DUO_0000041">
<rdfs:label xml:lang="en">DUO_preferred_label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
<obo:IAO_0000111>editor preferred label</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">editor preferred label</obo:IAO_0000111>
<obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">editor preferred term</obo:IAO_0000111>
<obo:IAO_0000111>editor preferred term~editor preferred label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label>editor preferred term</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<rdfs:label>editor preferred term~editor preferred label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
<obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">example of usage</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000113 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000113">
<obo:IAO_0000111 xml:lang="en">in branch</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">GROUP:OBI</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000277</obo:IAO_0000119>
<rdfs:label xml:lang="en">in branch</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
<obo:IAO_0000111 xml:lang="en">has curation status</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
<rdfs:label>has curation status</rdfs:label>
<rdfs:label xml:lang="en">has curation status</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<obo:IAO_0000111>definition</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
<obo:IAO_0000111>textual definition</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115>A property representing the English language definitions of what NCI means by the concept. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. </obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<oboInOwl:hasExactSynonym>DEFINITION</oboInOwl:hasExactSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
<rdfs:label>textual definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obofoundry.org/obo/obi></obo:IAO_0000119>
<oboInOwl:hasDbXref>IAO:0000116</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>editor_note</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>editor_note</oboInOwl:shorthand>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>editor note</rdfs:label>
<rdfs:label xml:lang="en">editor note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
<obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>definition editor</rdfs:label>
<rdfs:label xml:lang="en">definition editor</rdfs:label>
<rdfs:label>term editor</rdfs:label>
<rdfs:label xml:lang="en">term editor</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
<obo:IAO_0000111 xml:lang="en">alternative label</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</obo:IAO_0000115>
<obo:IAO_0000117>OBO Operations committee</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:comment>Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">alternative label</rdfs:label>
<rdfs:label>alternative term</rdfs:label>
<rdfs:label xml:lang="en">alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
<obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119>Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>definition source</rdfs:label>
<rdfs:label xml:lang="en">definition source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000231 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
<obo:IAO_0000111 xml:lang="en">has obsolescence reason</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
<obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<oboInOwl:hasDbXref>IAO:0000232</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>curator_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>curator_notes</oboInOwl:shorthand>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>curator note</rdfs:label>
<rdfs:label xml:lang="en">curator note</rdfs:label>
<rdfs:label>curator notes</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233">
<obo:IAO_0000111 xml:lang="en">term tracker item</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An IRI or similar locator for a request or discussion of an ontology term.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment xml:lang="en">The 'tracker item' can associate a tracker with a specific ontology term.</rdfs:comment>
<rdfs:label xml:lang="en">term tracker item</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000234 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234">
<obo:IAO_0000111 xml:lang="en">ontology term requester</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment>The 'term requester' can credit the person, organization or project who request the ontology term.</rdfs:comment>
<rdfs:label xml:lang="en">ontology term requester</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000411 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000411">
<obo:IAO_0000111 xml:lang="en">is denotator type</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an class defined in an ontology, to the type of it's denotator</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">is denotator type</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
<obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">For external terms/classes, the ontology from which the term was imported</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>imported from</rdfs:label>
<rdfs:label xml:lang="en">imported from</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000424 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000424">
<obo:IAO_0000111 xml:lang="en">expand expression to</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">ObjectProperty: RO_0002104
Label: has plasma membrane part
Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<rdfs:label xml:lang="en">expand expression to</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000425 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000425">
<obo:IAO_0000111 xml:lang="en">expand assertion to</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">ObjectProperty: RO???
Label: spatially disjoint from
Annotations: expand_assertion_to "DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<rdfs:label xml:lang="en">expand assertion to</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000426 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
<obo:IAO_0000111 xml:lang="en">first order logic expression</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">first order logic expression</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000427 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000427">
<obo:IAO_0000111 xml:lang="en">antisymmetric property</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">part_of antisymmetric property xsd:true</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Use boolean value xsd:true to indicate that the property is an antisymmetric property</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">antisymmetric property</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000589 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000589">
<obo:IAO_0000111 xml:lang="en">OBO foundry unique label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which is unique across the OBO Foundry.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBO Foundry <http://obofoundry.org/></obo:IAO_0000119>
<rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000596 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000596">
<obo:IAO_0000111 xml:lang="en">has ID digit count</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix" annotation property value concatenated with an integer in the id range (left padded with "0"s to make this many digits)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID digit count</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000597 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000597">
<obo:IAO_0000111 xml:lang="en">has ID range allocated</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Datatype: idrange:1
Annotations: 'has ID range allocated to': "Chris Mungall"
EquivalentTo: xsd:integer[> 2151 , <= 2300]
</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID range allocated to</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000598 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000598">
<obo:IAO_0000111 xml:lang="en">has ID policy for</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Relating an ontology used to record id policy to the ontology namespace whose policy it manages</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID policy for</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000599 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000599">
<obo:IAO_0000111 xml:lang="en">has ID prefix</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with "0"s to make this many digits) to construct an ID for a term being created.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID prefix</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
<obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">elucidation</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000601 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000601">
<obo:IAO_0000111 xml:lang="en">has associated axiom(nl)</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">An axiom associated with a term expressed using natural language</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000602 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000602">
<obo:IAO_0000111 xml:lang="en">has associated axiom(fol)</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">An axiom expressed in first order logic using CLIF syntax</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000603 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000603">
<obo:IAO_0000111 xml:lang="en">is allocated id range</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. "IAO_0020000-IAO_0020999"</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Add as annotation triples in the granting ontology</rdfs:comment>
<rdfs:label xml:lang="en">is allocated id range</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000604 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000604">
<obo:IAO_0000111 xml:lang="en">retired from use as of</obo:IAO_0000111>
<obo:IAO_0000115>relates a class of CRID to the date after which further instances should not be made, according to the central authority</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">In OWL 2 add AnnotationPropertyRange xsd:dateTimeStamp</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label>retired from use as of</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000700 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000700">
<obo:IAO_0000111 xml:lang="en">has ontology root term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Nicolas Matentzoglu</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ontology root term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0006011 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0006011">
<obo:IAO_0000111 xml:lang="en">may be identical to</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000233 xml:lang="en">#40</obo:IAO_0000233>
<obo:IAO_0000234 xml:lang="en">VFB</obo:IAO_0000234>
<rdfs:comment xml:lang="en">Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.</rdfs:comment>
<rdfs:label xml:lang="en">may be identical to</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0006012 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0006012">
<obo:IAO_0000111 xml:lang="en">scheduled for obsoletion on or after</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000233 xml:lang="en">https://github.com/geneontology/go-ontology/issues/15532</obo:IAO_0000233>
<obo:IAO_0000233 xml:lang="en">https://github.com/information-artifact-ontology/ontology-metadata/issues/32</obo:IAO_0000233>
<obo:IAO_0000234 xml:lang="en">GO ontology</obo:IAO_0000234>
<rdfs:label xml:lang="en">scheduled for obsoletion on or after</rdfs:label>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#dateTime"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0010000 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0010000">
<obo:IAO_0000111 xml:lang="en">has axiom id</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has axiom label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the term to another term that can be used as a substitute</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment xml:lang="en">Add as annotation triples in the granting ontology</rdfs:comment>
<rdfs:label xml:lang="en">term replaced by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000091 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000091">
<rdfs:label xml:lang="en">term_mapping_to_UMLS</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000092 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000092">
<rdfs:label xml:lang="en">term_mapping_to_NCIT</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000093 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000093">
<rdfs:label xml:lang="en">term_mapping_to_HL7v3</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000321 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000321">
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This annotation property specifies classes that were developed as part of an alignment effort between the Common Rule Ontology and the Informed Consent Ontology in the Summer of 2018. These classes represent entities that are necessary for understanding the regularatory frameworks that influence informed consent, often at a different level of granularity than individual consent processes. These classes were created to be compatible with regulatory frameworks outside the Unitied States, hence they are general.</obo:IAO_0000232>
<rdfs:label xml:lang="en">RUBRIC</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000404 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000404">
<rdfs:comment xml:lang="en">All classes and properties with this annotation are members of the PICO grammar.</rdfs:comment>
<rdfs:label xml:lang="en">PICO CLASS</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000420 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000420">
<rdfs:label xml:lang="en">Merriam-Webster Definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_NHC0 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_NHC0">
<protege:readOnly>true</protege:readOnly>
<obo:IAO_0000115>A property representing a concept unique identifier within the NCI Enterprise Vocabulary Service's NCI Thesaurus.</obo:IAO_0000115>
<obo:NCIT_NHC0>NHC0</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P108>code</obo:NCIT_P108>
<oboInOwl:hasExactSynonym>code</oboInOwl:hasExactSynonym>
<rdfs:label>code</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_P106 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_P106">
<obo:IAO_0000115>A property that represents a description of the sort of thing or category to which a concept belongs in the context of the UMLS semantic network.</obo:IAO_0000115>
<obo:NCIT_NHC0>P106</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P107>Semantic Type</obo:NCIT_P107>
<obo:NCIT_P108>Semantic_Type</obo:NCIT_P108>
<obo:NCIT_P98>In general, applying semantic types aids in allowing users (or computer programs) to draw conclusions about concepts by virtue of the categories to which they have been assigned. We use a set of semantic types developed for the UMLS Metathesaurus. There are currently 134 semantic types in the UMLS.</obo:NCIT_P98>
<oboInOwl:hasExactSynonym>Semantic_Type</oboInOwl:hasExactSynonym>
<rdfs:label>Semantic_Type</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_P107 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_P107">
<obo:IAO_0000115>A property representing an alternative Preferred Name for use in some NCI systems.</obo:IAO_0000115>
<obo:NCIT_NHC0>P107</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P107>Display Name</obo:NCIT_P107>
<obo:NCIT_P108>Display_Name</obo:NCIT_P108>
<oboInOwl:hasExactSynonym>Display Name</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Display_Name</oboInOwl:hasExactSynonym>
<rdfs:label>Display_Name</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_P108 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_P108">
<obo:IAO_0000115>A property representing the word or phrase that NCI uses by preference to refer to the concept.</obo:IAO_0000115>
<obo:NCIT_NHC0>P108</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P107>Preferred Name</obo:NCIT_P107>
<obo:NCIT_P108>Preferred_Name</obo:NCIT_P108>
<oboInOwl:hasExactSynonym>Preferred Name</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Preferred Term</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Preferred_Name</oboInOwl:hasExactSynonym>
<rdfs:label>Preferred_Name</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_P207 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_P207">
<obo:IAO_0000115>A property representing the concept unique identifier (CUI) assigned by the National Library of Medicine (NLM). If a concept in any NCI-maintained knowledgebase exists in the NLM Unified Medical Language System (UMLS), NCI includes the NLM CUI among the information we provide about the concept.</obo:IAO_0000115>
<obo:NCIT_NHC0>P207</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P107>UMLS CUI</obo:NCIT_P107>
<obo:NCIT_P108>UMLS_CUI</obo:NCIT_P108>
<oboInOwl:hasExactSynonym>UMLS_CUI</oboInOwl:hasExactSynonym>
<rdfs:label>UMLS_CUI</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_P322 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_P322">
<obo:IAO_0000115>A property is used to indicate when a non-EVS entity has contributed to, and has a stake in, a concept. This is used where such entities, within or outside NCI, have indicated the need to be able to track their own concepts. A single concept can have multiple instances of this property if multiple entities have such a defined stake.</obo:IAO_0000115>
<obo:NCIT_NHC0>P322</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P107>Contributing Source</obo:NCIT_P107>
<obo:NCIT_P108>Contributing_Source</obo:NCIT_P108>
<oboInOwl:hasExactSynonym>Contributing_Source</oboInOwl:hasExactSynonym>
<rdfs:label>Contributing_Source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_P325 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_P325">
<obo:IAO_0000115>A property representing the English language definition of a concept from a source other than NCI.</obo:IAO_0000115>
<obo:NCIT_NHC0>P325</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P107>[source] Definition</obo:NCIT_P107>
<obo:NCIT_P108>ALT_DEFINITION</obo:NCIT_P108>
<oboInOwl:hasExactSynonym>ALT_DEFINITION</oboInOwl:hasExactSynonym>
<rdfs:label>ALT_DEFINITION</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_P366 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_P366">
<protege:readOnly>true</protege:readOnly>
<obo:IAO_0000115>A property representing a retired unique concept identifier created and stored as Concept Name by legacy EVS software. Use of these values was long discouraged, but continued as late as 2009 when creation of new values ceased and Concept Name was retired. Legacy values are intended solely to help resolve and update earlier coding.</obo:IAO_0000115>
<obo:NCIT_NHC0>P366</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P108>Legacy Concept Name</obo:NCIT_P108>
<oboInOwl:hasExactSynonym>Legacy Concept Name</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Legacy_Concept_Name</oboInOwl:hasExactSynonym>
<rdfs:label>Legacy Concept Name</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/NCIT_P98 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/NCIT_P98">
<obo:IAO_0000115>A property representing notations made by NCI vocabulary curators. They are intended to provide supplemental, unstructured information to the user or additional insight about the concept.</obo:IAO_0000115>
<obo:NCIT_NHC0>P98</obo:NCIT_NHC0>
<obo:NCIT_P106>Conceptual Entity</obo:NCIT_P106>
<obo:NCIT_P107>DesignNote</obo:NCIT_P107>
<obo:NCIT_P108>DesignNote</obo:NCIT_P108>
<oboInOwl:hasExactSynonym>DesignNote</oboInOwl:hasExactSynonym>
<rdfs:label>DesignNote</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001847 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001847">
<obo:IAO_0000111 xml:lang="en">ISA alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An alternative term used by the ISA tools project (http://isa-tools.org).</obo:IAO_0000115>
<obo:IAO_0000116>Requested by Alejandra Gonzalez-Beltran
https://sourceforge.net/tracker/?func=detail&aid=3603413&group_id=177891&atid=886178</obo:IAO_0000116>
<obo:IAO_0000117>Person: Alejandra Gonzalez-Beltran</obo:IAO_0000117>
<obo:IAO_0000117>Person: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119>ISA tools project (http://isa-tools.org)</obo:IAO_0000119>
<rdfs:label xml:lang="en">ISA alternative term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001886 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001886">
<obo:IAO_0000111 xml:lang="en">NIAID GSCID-BRC alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An alternative term used by the National Institute of Allergy and Infectious Diseases (NIAID) Genomic Sequencing Centers for Infectious Diseases (GSCID) and Bioinformatics Resource Centers (BRC).</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>NIAID GSCID-BRC metadata working group</obo:IAO_0000119>
<rdfs:label xml:lang="en">NIAID GSCID-BRC alternative term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
<obo:IAO_0000115>An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.</obo:IAO_0000115>
<rdfs:label xml:lang="en">temporal interpretation</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor">
<dc:description xml:lang="en-us">Examples of a Contributor include a person, an
organisation, or a service. Typically, the name of a
Contributor should be used to indicate the entity.</dc:description>
<rdfs:comment xml:lang="en-us">An entity responsible for making contributions to the
content of the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
<rdfs:label>Contributor</rdfs:label>
<rdfs:label xml:lang="en-us">Contributor</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/coverage -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/coverage"/>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator">
<dc:description xml:lang="en-us">Examples of a Creator include a person, an organisation,
or a service. Typically, the name of a Creator should
be used to indicate the entity.</dc:description>
<rdfs:comment xml:lang="en-us">An entity primarily responsible for making the content
of the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
<rdfs:label>Creator</rdfs:label>
<rdfs:label xml:lang="en-us">Creator</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/date -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/date">
<dc:description xml:lang="en-us">Typically, Date will be associated with the creation or
availability of the resource. Recommended best practice
for encoding the date value is defined in a profile of
ISO 8601 [W3CDTF] and follows the YYYY-MM-DD format.</dc:description>
<rdfs:comment xml:lang="en-us">A date associated with an event in the life cycle of the
resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
<rdfs:label>Date</rdfs:label>
<rdfs:label xml:lang="en-us">Date</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description">
<dc:description xml:lang="en-us">Description may include but is not limited to: an abstract,
table of contents, reference to a graphical representation
of content or a free-text account of the content.</dc:description>
<rdfs:comment xml:lang="en-us">An account of the content of the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
<rdfs:label>Description</rdfs:label>
<rdfs:label xml:lang="en-us">Description</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/format -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/format">
<dc:description xml:lang="en-us">Typically, Format may include the media-type or dimensions of
the resource. Format may be used to determine the software,
hardware or other equipment needed to display or operate the
resource. Examples of dimensions include size and duration.
Recommended best practice is to select a value from a
controlled vocabulary (for example, the list of Internet Media
Types [MIME] defining computer media formats).</dc:description>
<rdfs:comment xml:lang="en-us">The physical or digital manifestation of the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
<rdfs:label>Format</rdfs:label>
<rdfs:label xml:lang="en-us">Format</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/identifier -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/identifier"/>
<!-- http://purl.org/dc/elements/1.1/language -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/language"/>
<!-- http://purl.org/dc/elements/1.1/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/license"/>
<!-- http://purl.org/dc/elements/1.1/member -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/member"/>
<!-- http://purl.org/dc/elements/1.1/publisher -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/publisher"/>
<!-- http://purl.org/dc/elements/1.1/relation -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/relation"/>
<!-- http://purl.org/dc/elements/1.1/rights -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/rights"/>
<!-- http://purl.org/dc/elements/1.1/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source">
<dc:description xml:lang="en-us">The present resource may be derived from the Source resource
in whole or in part. Recommended best practice is to reference
the resource by means of a string or number conforming to a
formal identification system.</dc:description>
<rdfs:comment xml:lang="en-us">A reference to a resource from which the present resource
is derived.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
<rdfs:label>Source</rdfs:label>
<rdfs:label xml:lang="en-us">Source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/subject -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/subject">
<dc:description xml:lang="en-us">Typically, a Subject will be expressed as keywords,
key phrases or classification codes that describe a topic
of the resource. Recommended best practice is to select
a value from a controlled vocabulary or formal
classification scheme.</dc:description>
<rdfs:comment xml:lang="en-us">The topic of the content of the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
<rdfs:label>Subject and Keywords</rdfs:label>
<rdfs:label xml:lang="en-us">Subject and Keywords</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title">
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/type -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license">
<obo:IAO_0000117>Mark Miller</obo:IAO_0000117>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-05-11T13:47:29Z</dc:date>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/source"/>
<!-- http://purl.org/dc/terms/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<rdfs:label>database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<obo:IAO_0000115>A property representing a fully qualified synonym, contains the string, term type, source, and an optional source code if appropriate. Each subfield is deliniated to facilitate interpretation by software.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>FULL_SYN</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Synonym with Source Data</oboInOwl:hasExactSynonym>
<rdfs:label>has exact synonym</rdfs:label>
<rdfs:label>has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace">
<rdfs:label>has_obo_namespace</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym">
<rdfs:label>has_related_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#id -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
<obo:IAO_0000115>An association that connects the concept defining a particular terminology subset with concepts that belong to this subset.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>Concept_In_Subset</oboInOwl:hasExactSynonym>
<rdfs:label>in subset</rdfs:label>
<rdfs:label>in_subset</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#is_metadata_tag -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#is_metadata_tag"/>
<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand">
<rdfs:label>shorthand</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/1999/02/22-rdf-syntax-ns#type -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#type"/>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
<!-- http://www.w3.org/2000/01/rdf-schema#isDefinedBy -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label">
<obo:IAO_0000111>label</obo:IAO_0000111>
<rdfs:label>label</rdfs:label>
<rdfs:label xml:lang="en">label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#seeAlso -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
<!-- http://www.w3.org/2004/02/skos/core#exactMatch -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#exactMatch"/>
<!-- http://xmlns.com/foaf/0.1/homepage -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/homepage"/>
<!-- http://xmlns.com/foaf/0.1/mbox -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/mbox"/>
<!-- http://xmlns.com/foaf/0.1/page -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://www.w3.org/2001/XMLSchema#date -->
<rdfs:Datatype rdf:about="http://www.w3.org/2001/XMLSchema#date"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">is part of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my brain is part of my body (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this day is part of this year (occurrent parthood)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a part and its whole</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">part_of</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">part of</rdfs:label>
<rdfs:seeAlso>http://www.obofoundry.org/ro/#OBO_REL:part_of</rdfs:seeAlso>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my body has part my brain (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this year has part this day (occurrent parthood)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a whole and its part</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">has part</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000054 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000054">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000111 xml:lang="en">realized in</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this disease is realized in this disease course</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this fragility is realized in this shattering</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigator role is realized in this investigation</obo:IAO_0000112>
<obo:IAO_0000118 xml:lang="en">is realized by</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">realized_in</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/ro.owl</obo:IAO_0000412>
<obo:IAO_0000600 xml:lang="en">[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])</obo:IAO_0000600>
<rdfs:comment>Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">realized in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000055 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000055">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<obo:IAO_0000111 xml:lang="en">realizes</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this disease course realizes this disease</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigation realizes this investigator role</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this shattering realizes this fragility</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])</obo:IAO_0000600>
<rdfs:comment>Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">realizes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000062">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label xml:lang="en">preceded by</rdfs:label>
<rdfs:label>preceded_by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000066 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000066">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000067"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
</owl:propertyChainAxiom>
<obo:IAO_0000111 xml:lang="en">occurs in</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">occurs_in</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">unfolds in</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">unfolds_in</obo:IAO_0000118>
<rdfs:comment>Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">occurs in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000067 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000067">
<obo:IAO_0000111 xml:lang="en">site of</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t</obo:IAO_0000115>
<rdfs:comment>Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">contains process</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/DUO_0000010 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/DUO_0000010">
<obo:DUO_0000041>is_restricted_to</obo:DUO_0000041>
<obo:IAO_0000115>A is restricted to B iff A is a consent code and B is an investigation and A may only participate in instances of a class C, of which B is an instance.</obo:IAO_0000115>
<obo:IAO_0000117>J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232>E.g. A dataset is restricted to an instance of an investigation for a specific disease or at geographical location.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000010</oboInOwl:id>
<rdfs:label>is restricted to</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000039 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
<rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000135 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000135">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<obo:IAO_0000112>The process of creation is, for example, writing down on paper the name of a friend by deliberately creating a certain pattern using ink.
Here the ink + paper is the independent continuant and the carrier is the pattern in the ink.
c = pattern in the ink
b = paper + ink
r = friend</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>c specifically denotes r =def
r is a portion of reality
& c is a particular quality
& c depends specifically on some independent continuant b
& b acquired c as the result of the achievement of an objective to enable pointing to r repeatedly.
Marked means there is a changed or additional quality of the bearer - the quality is the information carrier.
Case 1
Memory trace as mark created when reading some description of some friend. The trace can denote.
Case 2
Pattern of ink arrayed on paper as mark when writing down a friend's name
Case 3
Pattern of magnetic domains on scattered pieces of a hard disk platter as mark when saving a file.</obo:IAO_0000115>
<obo:IAO_0000116>8/6/2009 Alan Ruttenberg: The suggestions is to deprecate specific and generically denotes in favor of a single denote relationship that corresponds to the generic sense</obo:IAO_0000116>
<obo:IAO_0000116>see https://github.com/information-artifact-ontology/IAO/issues/25&q=denote</obo:IAO_0000116>
<obo:IAO_0000117>Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119>Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label>obsolete_specifically denotes</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000136">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">is about</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">This document is about information artifacts and their representations</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A (currently) primitive relation that relates an information artifact to an entity.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">is about</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000142 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000142">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An information artifact IA mentions an entity E exactly when it has a component/part that denotes E</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. P4 RC1 munges our GCI so remove it for now: mentions some entity equivalentTo has_part some ('generically denotes' some entity)</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg: Add this relation following conversation with Jonathan Rees that N&S GCI for is_about was too strong. Really it was simply sufficient. To effect this change we introduce this relation, which is subproperty of is_about, and have previous GCI use this relation "mentions" in it's (logical) definition</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person: Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">mentions</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000219 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000219">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<obo:IAO_0000111 xml:lang="en">denotes</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance "Alan" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between "Alan" and the person that is being named.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive.
g denotes r =def
r is a portion of reality
there is some c that is a concretization of g
every c that is a concretization of g specifically denotes r</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment xml:lang="en"></rdfs:comment>
<rdfs:label xml:lang="en">denotes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000220 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000220">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<obo:IAO_0000116>see https://github.com/information-artifact-ontology/IAO/issues/25&q=denote</obo:IAO_0000116>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label>obsolete_materially denotes</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000221 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000221">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000417"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000115 xml:lang="en">m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important]
This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.
--
From the second IAO workshop, various comments, [commented on by Alan Ruttenberg 8/6/2009]
unit of measure is a quality, e.g. the length of a ruler.
[We decided to hedge on what units of measure are, instead talking about measurement unit labels, which are the information content entities that are about whatever measurement units are. For IAO we need that information entity in any case. See the term measurement unit label]
[Some struggling with the various subflavors of is_about. We subsequently removed the relation represents, and describes until and only when we have a better theory]
a represents b means either a denotes b or a describes
describe:
a describes b means a is about b and a allows an inference of at least one quality of b
We have had a long discussion about denotes versus describes.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">From the second IAO workshop: An attempt at tieing the quality to the measurement datum more carefully.
a is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">From the second meeting on IAO:
An attempt at defining assay using Barry's "reliability" wording
assay:
process and has_input some material entity
and has_output some information content entity
and which is such that instances of this process type reliably generate
outputs that describes the input.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">is quality measurement of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000222 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000222">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label>obsolete_describes</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000223 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000223">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label>obsolete_represents</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000235 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000235">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115 xml:lang="en">inverse of the relation 'denotes'</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Mike Conlon</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/206"/>
<rdfs:label xml:lang="en">denoted by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000407 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000407">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/UO_0000001"/>
<rdfs:comment xml:lang="en">relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point</rdfs:comment>
<rdfs:label xml:lang="en">has coordinate unit label</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000413 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000413">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">relates a process to a time-measurement-datum that represents the duration of the process</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">is duration of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000417 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000417">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">inverse of the relation of is quality measurement of</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">is quality measured as</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000418 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000418">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000419"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A relation between a data item and a quality of a material entity where the material entity is the specified output of a material transformation which achieves an objective specification that indicates the intended value of the specified quality.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Bjoern Peters</obo:IAO_0000117>
<rdfs:label xml:lang="en">is quality specification of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000419 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000419">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">inverse of the relation of is quality specification of</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Bjoern Peters</obo:IAO_0000117>
<rdfs:label xml:lang="en">quality is specified as</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000581 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000581">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000582"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has time stamp</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000583 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000583">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000582"/>
<rdfs:range>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
<owl:Class>
<owl:complementOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</rdfs:range>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">relates a time stamped measurement datum to the measurement datum that was measured</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has measurement datum</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0021011 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0021011">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AsymmetricProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0021009"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0021008"/>
<obo:IAO_0000115 xml:lang="en">d socio-legally revokes s if s participates in d and at the end of d s no longer exists.
It is important to note that this going out of existence of s is complete and unlike the going out of existence for material entities which basically always are transformed into something else. After the declaration nothing is left of the socio-legal generically dependent continuant in question.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">legally revokes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0021012 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0021012">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AsymmetricProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
<obo:IAO_0000115 xml:lang="en">d socio-legally transfers l if l participates in d and d has specified input (concretization of l)1 and specified output (concretization of l)2, where (concretization of l)1 and (concretization of l)2 are not identical.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete_legally transfers</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000067 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000067">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<obo:IAO_0000115 xml:lang="en">An object property that represents a relation between a form and the person or organization who acts as a signer and signs the form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Elizabeth Eisenhauer</obo:IAO_0000117>
<rdfs:label>obsolete form signed by</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000130 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000130">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/ICO_0000111"/>
<obo:IAO_0000115 xml:lang="en">A relation that links an informed consent form to an associated IRB number.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Eisenhauer, Yongqun He, Asiyah Yu Lin, Alla Karnovsky, Marcy Harris</obo:IAO_0000117>
<rdfs:label>obsolete is associated with review board approval number</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000132 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000132">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<obo:IAO_0000115 xml:lang="en">An object property that represents a relation between a unique identifier (ID) and an organization that assigns the ID.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Elizabeth Eisenhauer, Asiyah Yu Lin, Alla Karnovsky, Marcy Harris</obo:IAO_0000117>
<rdfs:label>obsolete is assigned by organization</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000216 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000216">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<obo:IAO_0000115 xml:lang="en">A relation holding between an instance of a deontic role and an instance of an intentional action when the deontic role bearer participates in the intentional action and is allowed to do so.</obo:IAO_0000115>
<rdfs:label xml:lang="en">permits</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000224 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000224">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000225"/>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Jonathan Vajda, Cooper Stansbury</obo:IAO_0000117>
<rdfs:comment xml:lang="en">A relation between an instance of Process and an instance of Continuant, where the continuant is a causal participant in the process.</rdfs:comment>
<rdfs:label xml:lang="en">has agent</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/ICO_0000225 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/ICO_0000225">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<obo:IAO_0000115 xml:lang="en">A relation between a continuant and a process, where the continuant is a causal participant in the process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Jonathan Vajda, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">agent in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000124 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000124">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/OBI_0001909"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000111>is_supported_by_data</obo:IAO_0000111>
<obo:IAO_0000112>The relation between the conclusion "Gene tpbA is involved in EPS production" and the data items produced using two sets of organisms, one being a tpbA knockout, the other being tpbA wildtype tested in polysacharide production assays and analyzed using an ANOVA.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process</obo:IAO_0000115>
<obo:IAO_0000117>OBI</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000119>Philly 2011 workshop</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>is_supported_by_data</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293">
<owl:equivalentProperty>
<rdf:Description>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000295"/>
</rdf:Description>
</owl:equivalentProperty>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000295"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111>has specified input</obo:IAO_0000111>
<obo:IAO_0000111>has_specified_input</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">has_specified_input</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">see is_input_of example_of_usage</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The inverse property of is specified input of</obo:IAO_0000115>
<obo:IAO_0000116>8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Coutot</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">has specified input</rdfs:label>
<rdfs:label xml:lang="en">has_specified_input</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000295 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000295">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111>is specified input of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117>PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">is specified input of</rdfs:label>
<rdfs:label xml:lang="en">is_specified_input_of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299">
<owl:equivalentProperty>
<rdf:Description>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
</rdf:Description>
</owl:equivalentProperty>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111>has specified output</obo:IAO_0000111>
<obo:IAO_0000111>has_specified_output</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">has_specified_output</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The inverse property of is specified output of</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">has specified output</rdfs:label>
<rdfs:label xml:lang="en">has_specified_output</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111>is specified output of</obo:IAO_0000111>
<obo:IAO_0000111>is_specified_output_of</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">is_specified_output_of</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117>PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">is specified output of</rdfs:label>
<rdfs:label xml:lang="en">is_specified_output_of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000417 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000417">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000833"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
<obo:IAO_0000111>achieves_planned_objective</obo:IAO_0000111>
<obo:IAO_0000112>A cell sorting process achieves the objective specification 'material separation objective'</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.</obo:IAO_0000115>
<obo:IAO_0000117>BP, AR, PPPB branch</obo:IAO_0000117>
<obo:IAO_0000119>PPPB branch derived</obo:IAO_0000119>
<obo:IAO_0000232>modified according to email thread from 1/23/09 in accordince with DT and PPPB branch</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>achieves_planned_objective</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000643 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000643">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<obo:IAO_0000111>has grain</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Discussion in Karslruhe with, among others, Alan Rector, Stefan Schulz, Marijke Keet, Melanie Courtot, and Alan Ruttenberg. Definition take from the definition of granular parthood in the cited paper. Needs work to put into standard form</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119>PAPER: Granularity, scale and collectivity: When size does and does not matter, Alan Rector, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>has grain</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000833 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000833">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111>objective_achieved_by</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.</obo:IAO_0000115>
<obo:IAO_0000117>OBI</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>objective_achieved_by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001938 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001938">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/OBI_0001933"/>
<obo:IAO_0000111>has value specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A relation between an information content entity and a value specification that specifies its value.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: James A. Overton</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>has value specification</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000020 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000020">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<obo:IAO_0000231 xml:lang="en">BFO relation takes precedence.</obo:IAO_0000231>
<rdfs:comment xml:lang="en">We anticipate BFO 2.0 including and defining this relation. When it does, we will obsolete this property and declare it equivalent to the BFO 2.0 relation.
</rdfs:comment>
<rdfs:label>is-aggregate-of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000052 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000052">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<obo:IAO_0000111 xml:lang="en">inheres in</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this fragility inheres in this vase</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this fragility is a characteristic of this vase</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this red color inheres in this apple</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this red color is a characteristic of this apple</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A dependent inheres in its bearer at all times for which the dependent exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">inheres_in</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:comment>Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.</rdfs:comment>
<rdfs:label xml:lang="en">characteristic of</rdfs:label>
<rdfs:label xml:lang="en">inheres in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000053 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000053">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#InverseFunctionalProperty"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<obo:IAO_0000111 xml:lang="en">bearer of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this apple is bearer of this red color</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this vase is bearer of this fragility</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Inverse of characteristic_of</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">bearer_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is bearer of</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">bearer of</rdfs:label>
<rdfs:label xml:lang="en">bearer_of</rdfs:label>
<rdfs:label xml:lang="en">has characteristic</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000056 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000056">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:IAO_0000111 xml:lang="en">participates in</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this blood clot participates in this blood coagulation</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this input material (or this output material) participates in this process</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigator participates in this investigation</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a continuant and a process, in which the continuant is somehow involved in the process</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">participates_in</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">participates in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000057 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000057">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<obo:IAO_0000111 xml:lang="en">has participant</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this blood coagulation has participant this blood clot</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigation has participant this investigator</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this process has participant this input material (or this output material)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a process and a continuant, in which the continuant is somehow involved in the process</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_participant</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:has_participant</dc:source>
<terms:source>http://www.obofoundry.org/ro/#OBO_REL:has_participant</terms:source>
<rdfs:label xml:lang="en">has participant</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000058 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000058">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<rdfs:range>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000020"/>
</owl:unionOf>
</owl:Class>
</rdfs:range>
<obo:IAO_0000112 xml:lang="en">A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A relationship between a generically dependent continuant and a specifically dependent continuant or process, in which the generically dependent continuant depends on some independent continuant or process in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants or processes.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">is concretized as</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000059 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000059">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000020"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:IAO_0000112 xml:lang="en">A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A relationship between a specifically dependent continuant or process and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. Multiple specifically dependent continuants or processes can concretize the same generically dependent continuant.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">concretizes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000079 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000079">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<obo:IAO_0000112 xml:lang="en">this catalysis function is a function of this enzyme</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">function_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is function of</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment>This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.</rdfs:comment>
<rdfs:label xml:lang="en">function of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000080 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000080">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<obo:IAO_0000112 xml:lang="en">this red color is a quality of this apple</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A quality inheres in its bearer at all times for which the quality exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">is quality of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">quality_of</obo:IAO_0000118>
<rdfs:comment>This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.</rdfs:comment>
<rdfs:label xml:lang="en">quality of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000081 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000081">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<obo:IAO_0000112 xml:lang="en">this investigator role is a role of this person</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">is role of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">role_of</obo:IAO_0000118>
<rdfs:comment>This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.</rdfs:comment>
<rdfs:label xml:lang="en">role of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000085 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000085">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<obo:IAO_0000112 xml:lang="en">this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_function</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">has function</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000086 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000086">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000112 xml:lang="en">this apple has quality this red color</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_quality</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">has quality</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000087 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000087">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000112 xml:lang="en">this person has role this investigator role (more colloquially: this person has this role of investigator)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_role</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">has role</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000091 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000091">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000092"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence</obo:IAO_0000115>
<rdfs:label xml:lang="en">has disposition</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000092 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000092">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<rdfs:comment>This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.</rdfs:comment>
<rdfs:label xml:lang="en">disposition of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001000 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001000">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0001001"/>
<obo:IAO_0000111>derives from</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this cell derives from this parent cell (cell division)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this nucleus derives from this parent nucleus (nuclear division)</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">derives_from</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">derives from</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001001 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001001">
<obo:IAO_0000112 xml:lang="en">this parent cell derives into this cell (cell division)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this parent nucleus derives into this nucleus (nuclear division)</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">derives_into</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">derives into</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001015 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001015">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">is location of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my head is the location of my brain</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this cage is the location of this rat</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between two independent continuants, the location and the target, in which the target is entirely within the location</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">location_of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">location of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001025 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001025">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:domain>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:Class>
<owl:complementOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</rdfs:domain>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:Class>
<owl:complementOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</rdfs:range>
<obo:IAO_0000111 xml:lang="en">located in</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my brain is located in my head</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this rat is located in this cage</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between two independent continuants, the target and the location, in which the target is entirely within the location</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">located_in</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:located_in</dc:source>
<terms:source>http://www.obofoundry.org/ro/#OBO_REL:located_in</terms:source>
<rdfs:label xml:lang="en">located in</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#domain"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:IAO_0000116>This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.</obo:IAO_0000116>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#range"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:IAO_0000116>This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.</obo:IAO_0000116>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/RO_0002000 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002000">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002002"/>
<obo:IAO_0000112 xml:lang="en">the surface of my skin is a 2D boundary of my body</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">2D_boundary_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">boundary of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is 2D boundary of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is boundary of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">2D boundary of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002002 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002002">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<obo:IAO_0000112 xml:lang="en">my body has 2D boundary the surface of my skin</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has boundary</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">has_2D_boundary</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">has 2D boundary</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002180 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002180">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.</obo:IAO_0000115>
<obo:IAO_0000116>The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.</obo:IAO_0000116>
<obo:IAO_0000232 xml:lang="en">For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">has component</rdfs:label>
<rdfs:seeAlso rdf:resource="http://ontologydesignpatterns.org/wiki/Submissions:Componency"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002218 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002218">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<obo:IAO_0000112>'heart development' has active participant some Shh protein</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>x has participant y if and only if x realizes some active role that inheres in y</obo:IAO_0000115>
<obo:IAO_0000116>This may be obsoleted and replaced by the original 'has agent' relation</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>has agent</obo:IAO_0000118>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/ro.owl</obo:IAO_0000412>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:label xml:lang="en">has active participant</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002350 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002350">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<obo:IAO_0000112>An organism that is a member of a population of organisms</obo:IAO_0000112>
<obo:IAO_0000115>is member of is a mereological relation between a item and a collection.</obo:IAO_0000115>
<obo:IAO_0000118>is member of</obo:IAO_0000118>
<obo:IAO_0000118>member part of</obo:IAO_0000118>
<obo:IAO_0000119>SIO</obo:IAO_0000119>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">member of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002351 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002351">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
<obo:IAO_0000115>has member is a mereological relation between a collection and an item.</obo:IAO_0000115>
<obo:IAO_0000119>SIO</obo:IAO_0000119>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">has member</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004096 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004096">
<rdfs:comment>DEPRECATED This relation is similar to but different in important respects to the characteristic-of relation. See comments on that relation for more information.</rdfs:comment>
<rdfs:label xml:lang="en">DEPRECATED inheres in</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004097 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004097">
<rdfs:label xml:lang="en">DEPRECATED bearer of</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty -->
<owl:ObjectProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/designated_by -->
<owl:ObjectProperty rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/designated_by">
<obo:IAO_0000115 xml:lang="en">The inverse of designates, which relates an Entity to some Information Content Entity.</obo:IAO_0000115>
<obo:IAO_0000232 xml:lang="en">Note on modification: Changed relation to hold between an IAO: Information Content Entity instead of a Designative Information Content Entity.</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/designated_by"/>
<dc:date xml:lang="en">Imported 08.09.2018</dc:date>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:label xml:lang="en">designated by</rdfs:label>
</owl:ObjectProperty>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/has_familial_relationship_to -->
<owl:ObjectProperty rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/has_familial_relationship_to">
<obo:IAO_0000115 xml:lang="en">A relationship between persons by virtue of ancestry or legal union.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">https://github.com/CommonCoreOntology/CommonCoreOntologies/blob/master/AgentOntology.ttl</obo:IAO_0000119>
<dc:date xml:lang="en">Retrieved from Common Core Ontologies 2/06/2019</dc:date>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:label xml:lang="en">has familial relationship to</rdfs:label>
</owl:ObjectProperty>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/prescribed_by -->
<owl:ObjectProperty rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/prescribed_by">
<owl:inverseOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/prescribes"/>
<obo:IAO_0000115 xml:lang="en">The inverse of presecribes, which relates an Entity to some Directive Information Content Entity.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/prescribed_by"/>
<dc:date xml:lang="en">Imported 08.09.2018</dc:date>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:label xml:lang="en">prescribed by</rdfs:label>
</owl:ObjectProperty>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/prescribes -->
<owl:ObjectProperty rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/prescribes">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<obo:IAO_0000412 xml:lang="en">http://www.ontologyrepository.com/CommonCoreOntologies/prescribes</obo:IAO_0000412>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:comment xml:lang="en">For all types T1 and T2, if T1 prescribes T2, then there is some instance of T1, t1, that serves as a rule or guide to some instance of T2, t2 (if T2 is a type of bfo:Occurrent) or that serves as a model for some instance of T2, t2 (if T2 is a type of bfo:Continuant).</rdfs:comment>
<rdfs:label xml:lang="en">prescribes</rdfs:label>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000004 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000004">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000032"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#double"/>
<rdfs:label xml:lang="en">has measurement value</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000404 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000404">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
<rdfs:label xml:lang="en">has x coordinate value</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000405 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000405">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
<rdfs:label xml:lang="en">has z coordinate value</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000406 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000406">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
<rdfs:label xml:lang="en">has y coordinate value</rdfs:label>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibary.org/obo/IAO_0021001 -->
<owl:Class rdf:about="http://purl.obolibary.org/obo/IAO_0021001">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000112 xml:lang="en">my filling in an immigration form, a judge's signing and stamping a court order</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A deontic declaration creating or revoking a deontic role by lawfully manipulating (signing, stamping, publishing) a document.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label xml:lang="en">obsolete_deontic document act</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000008">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000010"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that has specified output a software product and that involves the creation of source code.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Software_development</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">A planned process resulting in a software product involving the creation of source code.</obo:IAO_0000600>
<rdfs:label xml:lang="en">software development</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000032">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000033"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<obo:IAO_0000115 xml:lang="en">A measurement datum that is the output of counting.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A measurement datum that is the output of counting.</obo:IAO_0000600>
<rdfs:label xml:lang="en">count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000033 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000033">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000032"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">The planned process of finding the number of elements in a finite set of objects.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Counting</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">The planned process of finding the number of elements in a finite set of objects.</obo:IAO_0000600>
<rdfs:label xml:lang="en">counting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000522 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000522">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">software source code version control repository</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based</rdfs:comment>
<rdfs:label xml:lang="en">source code repository</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000524 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000524">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000008"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000010"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000010"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">process of compiling software</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).</rdfs:comment>
<rdfs:comment xml:lang="en">Source code can be automatically generated to some extent, but we're assuming humans still curate it minimally. Also, in the case of Java and its JVM, it's machine interpretable instructions, not directly executable. Ditto for other languages with intermediate form like Java byte code.</rdfs:comment>
<rdfs:label xml:lang="en">compiling software</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000796 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000796">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000100"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111 xml:lang="en">creating a data set</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A planned process that has a data set as its specified output.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">data set creation</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">dataset creation</obo:IAO_0000118>
<rdfs:label xml:lang="en">dataset creating</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001">
<rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
<obo:BFO_0000179>entity</obo:BFO_0000179>
<obo:BFO_0000180>Entity</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">Julius Caesar</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">Verdi’s Requiem</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the Second World War</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your body mass index</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])</obo:IAO_0000600>
<rdfs:comment xml:lang="en">from BFO</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">entity</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000004"/>
<rdfs:comment>per discussion with Barry Smith</rdfs:comment>
<rdfs:seeAlso rdf:resource="http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/001-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:disjointWith>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
</owl:Restriction>
</owl:disjointWith>
<obo:BFO_0000179>continuant</obo:BFO_0000179>
<obo:BFO_0000180>Continuant</obo:BFO_0000180>
<obo:IAO_0000115 xml:lang="en">An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">continuant</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000007"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/008-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/126-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/009-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/011-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/009-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/126-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/008-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/011-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<owl:disjointWith>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
</owl:Restriction>
</owl:disjointWith>
<obo:BFO_0000179>occurrent</obo:BFO_0000179>
<obo:BFO_0000180>Occurrent</obo:BFO_0000180>
<obo:IAO_0000115 xml:lang="en">An entity that has temporal parts and that happens, unfolds or develops through time.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.</obo:IAO_0000116>
<obo:IAO_0000116>Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">occurrent</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000006"/>
<rdfs:comment>per discussion with Barry Smith</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget>Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000012"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/077-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/108-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/079-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/108-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/079-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:BFO_0000179>ic</obo:BFO_0000179>
<obo:BFO_0000180>IndependentContinuant</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a chair</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a heart</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a leg</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a molecule</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a spatial region</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an atom</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an orchestra.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an organism</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the bottom right portion of a human torso</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your mouth</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000601 xml:lang="en">For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] </obo:IAO_0000602>
<obo:IAO_0000602>(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] </obo:IAO_0000602>
<rdfs:comment xml:lang="en">A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">independent continuant</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/017-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/134-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/018-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/134-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/018-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/017-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000005">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities.</obo:IAO_0000115>
<rdfs:label xml:lang="en">obsolete dependent continuant</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000140"/>
<obo:BFO_0000179>s-region</obo:BFO_0000179>
<obo:BFO_0000180>SpatialRegion</obo:BFO_0000180>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Spatial regions do not participate in processes.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">spatial region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000002"/>
<rdfs:comment>per discussion with Barry Smith</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/035-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/036-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/036-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/035-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000035"/>
<obo:BFO_0000179>t-region</obo:BFO_0000179>
<obo:BFO_0000180>TemporalRegion</obo:BFO_0000180>
<obo:IAO_0000116 xml:lang="en">Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<obo:IAO_0000600 xml:lang="en">A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">temporal region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000003"/>
<rdfs:comment>per discussion with Barry Smith</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/100-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/101-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/119-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/119-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/101-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/100-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000028"/>
<obo:BFO_0000179>2d-s-region</obo:BFO_0000179>
<obo:BFO_0000180>TwoDimensionalSpatialRegion</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">an infinitely thin plane in space.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the surface of a sphere-shaped part of space</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">two-dimensional spatial region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000009"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/039-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000009"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/039-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:BFO_0000179>st-region</obo:BFO_0000179>
<obo:BFO_0000180>SpatiotemporalRegion</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">the spatiotemporal region occupied by a human life</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the spatiotemporal region occupied by a process of cellular meiosis.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the spatiotemporal region occupied by the development of a cancer tumor</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">Every spatiotemporal region occupies_spatiotemporal_region itself.</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">spatiotemporal region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/095-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/096-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/099-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/098-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/107-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/107-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/099-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/096-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/095-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/098-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:BFO_0000179>process</obo:BFO_0000179>
<obo:BFO_0000180>Process</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a process of cell-division, \ a beating of the heart</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a process of meiosis</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a process of sleeping</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the course of a disease</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the flight of a bird</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the life of an organism</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your process of aging.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000602>(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] </obo:IAO_0000602>
<rdfs:comment xml:lang="en">An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">process</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/083-003"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/083-003"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:BFO_0000179>disposition</obo:BFO_0000179>
<obo:BFO_0000180>Disposition</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">an atom of element X has the disposition to decay to an atom of element Y</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">certain people have a predisposition to colon cancer</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">children are innately disposed to categorize objects in certain ways.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the cell wall is disposed to filter chemicals in endocytosis and exocytosis</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">disposition</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/062-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/063-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/063-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/062-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:BFO_0000179>realizable</obo:BFO_0000179>
<obo:BFO_0000180>RealizableEntity</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">the disposition of this piece of metal to conduct electricity.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the disposition of your blood to coagulate</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the function of your reproductive organs</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of being a doctor</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of this boundary to delineate where Utah and Colorado meet</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">realizable entity</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/058-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/060-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/060-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/058-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000028"/>
<obo:BFO_0000179>0d-s-region</obo:BFO_0000179>
<obo:BFO_0000180>ZeroDimensionalSpatialRegion</obo:BFO_0000180>
<obo:IAO_0000600 xml:lang="en">A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">zero-dimensional spatial region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000018"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/037-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000018"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/037-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<obo:BFO_0000179>quality</obo:BFO_0000179>
<obo:BFO_0000180>Quality</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">the ambient temperature of this portion of air</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the color of a tomato</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the length of the circumference of your waist</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the mass of this piece of gold.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the shape of your nose</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the shape of your nostril</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/055-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/105-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/055-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/105-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:BFO_0000179>sdc</obo:BFO_0000179>
<obo:BFO_0000180>SpecificallyDependentContinuant</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">of one-sided specifically dependent continuants: the mass of this tomato</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the disposition of this fish to decay</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the function of this heart: to pump blood</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the mutual dependence of proton donors and acceptors in chemical reactions [79</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the pink color of a medium rare piece of grilled filet mignon at its center</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of being a doctor</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the shape of this hole.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the smell of this portion of mozzarella</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n &gt; 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i &lt; j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000602>(iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004] </obo:IAO_0000602>
<obo:IAO_0000602>(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] </obo:IAO_0000602>
<rdfs:comment xml:lang="en">A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">specifically dependent continuant</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/050-003"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000005"/>
<rdfs:comment>per discussion with Barry Smith</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/050-003"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<obo:BFO_0000179>role</obo:BFO_0000179>
<obo:BFO_0000180>Role</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the priest role</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of a boundary to demarcate two neighboring administrative territories</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of a building in serving as a military target</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of a stone in marking a property boundary</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of subject in a clinical trial</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the student role</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">role</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/061-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/061-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:BFO_0000179>fiat-object-part</obo:BFO_0000179>
<obo:BFO_0000180>FiatObjectPart</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the FMA:regional parts of an intact human body.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the Western hemisphere of the Earth</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the division of the brain into regions</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the division of the planet into hemispheres</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the dorsal and ventral surfaces of the body</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the upper and lower lobes of the left lung</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions</obo:IAO_0000116>
<obo:IAO_0000600 xml:lang="en">b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">fiat object part</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000024"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/027-004"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000024"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/027-004"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000026">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000028"/>
<obo:BFO_0000179>1d-s-region</obo:BFO_0000179>
<obo:BFO_0000180>OneDimensionalSpatialRegion</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">an edge of a cube-shaped portion of space.</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">one-dimensional spatial region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000026"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/038-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000026"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/038-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:BFO_0000179>object-aggregate</obo:BFO_0000179>
<obo:BFO_0000180>ObjectAggregate</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a collection of cells in a blood biobank.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a swarm of bees is an aggregate of members who are linked together through natural bonds</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a symphony orchestra</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">defined by fiat: the aggregate of members of an organization</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">defined through physical attachment: the aggregate of atoms in a lump of granite</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">defined via attributive delimitations such as: the patients in this hospital</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the aggregate of bearings in a constant velocity axle joint</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the aggregate of blood cells in your body</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the nitrogen atoms in the atmosphere</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the restaurants in Palo Alto</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your collection of Meissen ceramic plates.</obo:IAO_0000112>
<obo:IAO_0000116>An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects </obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).</obo:IAO_0000116>
<obo:IAO_0000119>ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">object aggregate</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget>An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000011"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget>An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000301"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000119"/>
<owl:annotatedTarget>ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000300"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/025-004"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/025-004"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000028 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000028">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
<obo:BFO_0000179>3d-s-region</obo:BFO_0000179>
<obo:BFO_0000180>ThreeDimensionalSpatialRegion</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a cube-shaped region of space</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a sphere-shaped region of space,</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">three-dimensional spatial region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000028"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/040-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000028"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/040-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<obo:BFO_0000179>site</obo:BFO_0000179>
<obo:BFO_0000180>Site</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">Manhattan Canyon)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a hole in the interior of a portion of cheese</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a rabbit hole</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an air traffic control region defined in the airspace above an airport</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the Grand Canyon</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the Piazza San Marco</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the cockpit of an aircraft</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the hold of a ship</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of a kangaroo pouch</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of the trunk of your car</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your bedroom</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your office</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your refrigerator</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the lumen of your gut</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your left nostril (a fiat part – the opening – of your left nasal cavity)</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<obo:IAO_0000600 xml:lang="en">b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">site</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/034-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/034-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000030">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:BFO_0000179>object</obo:BFO_0000179>
<obo:BFO_0000180>Object</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">atom</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">cell</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">cells and organisms</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">engineered artifacts</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">grain of sand</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">molecule</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">organelle</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">organism</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">planet</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">solid portions of matter</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">star</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: an object is a maximal causally unified material entity</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74</obo:IAO_0000116>
<obo:IAO_0000600 xml:lang="en">b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">object</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000030"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/024-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000031">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<obo:BFO_0000179>gdc</obo:BFO_0000179>
<obo:BFO_0000180>GenericallyDependentContinuant</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the pdf file on your laptop, the pdf file that is a copy thereof on my laptop</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000602>(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] </obo:IAO_0000602>
<rdfs:comment xml:lang="en">A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">generically dependent continuant</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/074-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/074-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000034 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000034">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:BFO_0000179>function</obo:BFO_0000179>
<obo:BFO_0000180>Function</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">the function of a hammer to drive in nails</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the function of a heart pacemaker to regulate the beating of a heart through electricity</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the function of amylase in saliva to break down starch into sugar</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">function</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/064-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/064-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000035 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000035">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:BFO_0000179>p-boundary</obo:BFO_0000179>
<obo:BFO_0000180>ProcessBoundary</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">the boundary between the 2nd and 3rd year of your life.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])</obo:IAO_0000115>
<obo:IAO_0000601 xml:lang="en">Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] </obo:IAO_0000602>
<obo:IAO_0000602>(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">process boundary</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000035"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/084-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000035"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/085-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000035"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/085-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000035"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/084-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000038 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000038">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000148"/>
<obo:BFO_0000179>1d-t-region</obo:BFO_0000179>
<obo:BFO_0000180>OneDimensionalTemporalRegion</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">the temporal region during which a process occurs.</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<obo:IAO_0000600 xml:lang="en">A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">one-dimensional temporal region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000038"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/103-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000038"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/103-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<obo:BFO_0000179>material</obo:BFO_0000179>
<obo:BFO_0000180>MaterialEntity</obo:BFO_0000180>
<obo:IAO_0000111 xml:lang="en">material entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">a flame</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a forest fire</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a human being</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a hurricane</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a photon</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a puff of smoke</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a sea wave</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a tornado</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an aggregate of human beings.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an energy wave</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an epidemic</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the undetached arm of a human being</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ido.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000600 xml:lang="en">A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">material entity</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/019-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/020-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/021-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/019-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/021-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/020-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000140 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000140">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<obo:BFO_0000179>cf-boundary</obo:BFO_0000179>
<obo:BFO_0000180>ContinuantFiatBoundary</obo:BFO_0000180>
<obo:IAO_0000115 xml:lang="en">b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.</obo:IAO_0000116>
<obo:IAO_0000601 xml:lang="en">Every continuant fiat boundary is located at some spatial region at every time at which it exists</obo:IAO_0000601>
<obo:IAO_0000602>(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">continuant fiat boundary</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000140"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/029-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000140"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000008"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000140"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/029-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000141 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000141">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:BFO_0000179>immaterial</obo:BFO_0000179>
<obo:BFO_0000180>ImmaterialEntity</obo:BFO_0000180>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">immaterial entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000142 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000142">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000140"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000146"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000147"/>
<obo:BFO_0000179>1d-cf-boundary</obo:BFO_0000179>
<obo:BFO_0000180>OneDimensionalContinuantFiatBoundary</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">The Equator</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">all geopolitical boundaries</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">all lines of latitude and longitude</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the median sulcus of your tongue</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])</obo:IAO_0000600>
<obo:IAO_0000602>(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">one-dimensional continuant fiat boundary</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000142"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/032-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000142"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/032-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000144 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000144">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000182"/>
<obo:BFO_0000179>process-profile</obo:BFO_0000179>
<obo:BFO_0000180>ProcessProfile</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] </obo:IAO_0000602>
<obo:IAO_0000602>(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">process profile</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000144"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/093-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000144"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/094-005"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000144"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/094-005"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000144"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/093-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000145 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000145">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:BFO_0000179>r-quality</obo:BFO_0000179>
<obo:BFO_0000180>RelationalQuality</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a marriage bond, an instance of requited love, an obligation between one person and another.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])</obo:IAO_0000115>
<obo:IAO_0000602>(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">relational quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000145"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/057-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000145"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/057-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000146 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000146">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000140"/>
<obo:BFO_0000179>2d-cf-boundary</obo:BFO_0000179>
<obo:BFO_0000180>TwoDimensionalContinuantFiatBoundary</obo:BFO_0000180>
<obo:IAO_0000600 xml:lang="en">a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])</obo:IAO_0000600>
<obo:IAO_0000602>(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">two-dimensional continuant fiat boundary</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000146"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/033-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000146"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/033-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000147 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000147">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000140"/>
<obo:BFO_0000179>0d-cf-boundary</obo:BFO_0000179>
<obo:BFO_0000180>ZeroDimensionalContinuantFiatBoundary</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">the geographic North Pole</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the point of origin of some spatial coordinate system.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.</obo:IAO_0000116>
<obo:IAO_0000600 xml:lang="en">a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])</obo:IAO_0000600>
<obo:IAO_0000602>(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">zero-dimensional continuant fiat boundary</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000147"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000001"/>
<rdfs:comment>requested by Melanie Courtot</rdfs:comment>
<rdfs:seeAlso rdf:resource="https://groups.google.com/d/msg/bfo-owl-devel/s9Uug5QmAws/ZDRnpiIi_TUJ"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000147"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/031-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000147"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/031-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000148 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000148">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<obo:BFO_0000179>0d-t-region</obo:BFO_0000179>
<obo:BFO_0000180>ZeroDimensionalTemporalRegion</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a temporal region that is occupied by a process boundary</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">right now</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the moment at which a child is born</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the moment at which a finger is detached in an industrial accident</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the moment of death.</obo:IAO_0000112>
<obo:IAO_0000118 xml:lang="en">temporal instant.</obo:IAO_0000118>
<obo:IAO_0000600 xml:lang="en">A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">zero-dimensional temporal region</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000148"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/102-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000148"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/102-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000182 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000182">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:BFO_0000179>history</obo:BFO_0000179>
<obo:BFO_0000180>History</obo:BFO_0000180>
<obo:IAO_0000600 xml:lang="en">A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">history</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000182"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/138-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/CHEBI_16670 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_16670">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33839"/>
<obo:IAO_0000111>peptide</obo:IAO_0000111>
<obo:IAO_0000115>Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>peptide</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_16991 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_16991">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33696"/>
<obo:IAO_0000111>deoxyribonucleic acid</obo:IAO_0000111>
<obo:IAO_0000115>High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>deoxyribonucleic acid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_23367 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111>molecular entity</obo:IAO_0000111>
<obo:IAO_0000115>Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">We are assuming that every molecular entity has to be completely connected by chemical bonds. This excludes protein complexes, which are comprised of minimally two separate molecular entities. We will follow up with Chebi to ensure this is their understanding as well</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>molecular entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_33696 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_33696">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33839"/>
<obo:IAO_0000111>nucleic acid</obo:IAO_0000111>
<obo:IAO_0000115>A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nucleic acid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_33697 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_33697">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33696"/>
<obo:IAO_0000111>ribonucleic acid</obo:IAO_0000111>
<obo:IAO_0000115>High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>ribonucleic acid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_33839 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_33839">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<obo:IAO_0000111>macromolecule</obo:IAO_0000111>
<obo:IAO_0000115>A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">polymer</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/chebi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>macromolecule</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHMO_0002832 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHMO_0002832">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHMO_0002845"/>
<obo:IAO_0000115>A planned process in which materials are removed permanently from the laboratory or repository.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/chmo.owl"/>
<oboInOwl:id>CHMO:0002832</oboInOwl:id>
<rdfs:comment>makes no judgement about whether this is a good way to do it, or a bad way such as tipping down the sink.</rdfs:comment>
<rdfs:label>material disposal</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHMO_0002845 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHMO_0002845">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115>A planned process that involves all aspects of dealing with the waste produced in experiments.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/chmo.owl"/>
<oboInOwl:id>CHMO:0002845</oboInOwl:id>
<rdfs:label>waste management</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_0000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111>cell</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID:18089833.Cancer Res. 2007 Dec 15;67(24):12018-25. "...Epithelial cells were harvested from histologically confirmed adenocarcinomas .."</obo:IAO_0000112>
<obo:IAO_0000115>A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cell</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000578"/>
<rdfs:subClassOf>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600036"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600036"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000111>cultured cell</obo:IAO_0000111>
<obo:IAO_0000115>A cell in vitro that is or has been maintained or propagated as part of a cell culture.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cultured cell</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_0000232 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000232">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<obo:IAO_0000111>erythrocyte</obo:IAO_0000111>
<obo:IAO_0000115>A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>erythrocyte</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_0000558 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000558">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<obo:IAO_0000111>reticulocyte</obo:IAO_0000111>
<obo:IAO_0000115>An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>reticulocyte</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_0000578 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000578">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>experimentally modified cell in vitro</obo:IAO_0000111>
<obo:IAO_0000115>A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>experimentally modified cell in vitro</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_0000738 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000738">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<obo:IAO_0000111>leukocyte</obo:IAO_0000111>
<obo:IAO_0000115>An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>leukocyte</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_0000842 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000842">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<obo:IAO_0000111>mononuclear cell</obo:IAO_0000111>
<obo:IAO_0000115>A leukocyte with a single non-segmented nucleus in the mature form.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>mononuclear cell</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CL_2000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_2000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000842"/>
<obo:IAO_0000111>peripheral blood mononuclear cell</obo:IAO_0000111>
<obo:IAO_0000115>A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>peripheral blood mononuclear cell</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000115 xml:lang="en">A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used.</obo:IAO_0000115>
<obo:IAO_0000118>consent code</obo:IAO_0000118>
<oboInOwl:id>DUO:0000001</oboInOwl:id>
<rdfs:label xml:lang="en">data use permission</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000002">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115>A categorical data item indicating the primary category the consent code belongs to according to Dyke et al. 2016.</obo:IAO_0000115>
<obo:IAO_0000231>This term was depreacted as it is not used to tag datasets but instead as patterns for DUO codes capture. This is an archive specific requirement, e.g. "one code from a primary category and one or more from a second category'
This is better done by Schemablocks and constraining the pattern of usage of DUO terms at each archive level.</obo:IAO_0000231>
<oboInOwl:id>DUO:0000002</oboInOwl:id>
<rdfs:label>obsolete consent code primary category</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000003">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115>A categorical data item indicating the secondary category the consent code belongs to according to Dyke et al. 2016.</obo:IAO_0000115>
<obo:IAO_0000231>This term was depreacted as it is not used to tag datasets but instead as patterns for DUO codes capture. This is an archive specific requirement, e.g. "one code from a primary category and one or more from a second category'
This is better done by Schemablocks and constraining the pattern of usage of DUO terms at each archive level.</obo:IAO_0000231>
<oboInOwl:id>DUO:0000003</oboInOwl:id>
<rdfs:label>obsolete consent code secondary category</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000001"/>
<obo:IAO_0000115 xml:lang="en">This data use permission indicates there is no restriction on use.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000004</oboInOwl:id>
<oboInOwl:shorthand>NRES</oboInOwl:shorthand>
<rdfs:comment>20180907, Meeting Moran Melanie: This is to be thought about more carefully - what is the intent when using 'no restriction' as usually users still need to be researchers.</rdfs:comment>
<rdfs:comment>Note: the NRES alternative term may be confusing as in the UK it also stands for National Research Ethics Service</rdfs:comment>
<rdfs:label xml:lang="en">no restriction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_00000044 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_00000044">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000044</oboInOwl:id>
<oboInOwl:shorthand>NPOA</oboInOwl:shorthand>
<rdfs:label xml:lang="en">population origins or ancestry research prohibited</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000005">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">This data use limitation indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry.</obo:IAO_0000115>
<obo:IAO_0100001 xml:lang="en">General Research Use, DUO_0000042
Clinical Care USe, DUO_0000043</obo:IAO_0100001>
<oboInOwl:id>DUO:0000005</oboInOwl:id>
<oboInOwl:shorthand>GRU-CC</oboInOwl:shorthand>
<rdfs:comment>This term includes clinical care, which was not defined in the original consent codes paper. This term does not have a usage in our current use cases and we recommend using DUO:0000042, General Research Use, instead</rdfs:comment>
<rdfs:comment xml:lang="en">This term was made obsolete as per https://github.com/EBISPOT/DUO/issues/45</rdfs:comment>
<rdfs:label xml:lang="en">obsolete general research use and clinical care</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000042"/>
<obo:IAO_0000115 xml:lang="en">This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000006</oboInOwl:id>
<oboInOwl:shorthand>HMB</oboInOwl:shorthand>
<rdfs:label xml:lang="en">health or medical or biomedical research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000006"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/DUO_0000010"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">This data use permission indicates that use is allowed provided it is related to the specified disease.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000007</oboInOwl:id>
<oboInOwl:shorthand>DS</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">This term should be coupled with a term describing a disease from an ontology to specify the disease the restriction applies to.
DUO recommends MONDO be used, to provide the basis for automated evaluation. For more information see https://github.com/EBISPOT/DUO/blob/master/MONDO_Overview.md
Other resources, such as the Disease Ontology, HPO, SNOMED-CT or others, can also be used. When those other resources are being used, this may require an extra mapping step to leverage automated matching algorithms.</rdfs:comment>
<rdfs:label xml:lang="en">disease specific research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000001"/>
<obo:IAO_0000115 xml:lang="en">This data use permission indicates that use of the data is limited to the study of population origins or ancestry.</obo:IAO_0000115>
<obo:IAO_0000118>population origins/ancestry research</obo:IAO_0000118>
<oboInOwl:id>DUO:0000011</oboInOwl:id>
<oboInOwl:shorthand>POA</oboInOwl:shorthand>
<rdfs:label xml:lang="en">population origins or ancestry research only</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/DUO_0000010"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/topic_0003"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use is limited to studies of a certain research type.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000012</oboInOwl:id>
<oboInOwl:shorthand>RS</oboInOwl:shorthand>
<rdfs:label xml:lang="en">research specific restrictions</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000014">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">This data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).</obo:IAO_0000115>
<oboInOwl:id>DUO:0000014</oboInOwl:id>
<oboInOwl:shorthand>RU</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">Deprecated as GRU-CC was split into GRU and CC, so this is not applicable anymore as a qualifier of GRU-CC</rdfs:comment>
<rdfs:label xml:lang="en">obsolete research use only</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000015">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use does not allow methods development research (e.g., development of software or algorithms).</obo:IAO_0000115>
<oboInOwl:id>DUO:0000015</oboInOwl:id>
<oboInOwl:shorthand>NMDS</oboInOwl:shorthand>
<rdfs:label xml:lang="en">no general methods research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use is limited to genetic studies only (i.e., studies that include genotype research alone or both genotype and phenotype research, but not phenotype research exclusively)</obo:IAO_0000115>
<oboInOwl:id>DUO:0000016</oboInOwl:id>
<oboInOwl:shorthand>GSO</oboInOwl:shorthand>
<rdfs:label xml:lang="en">genetic studies only</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000115 xml:lang="en">Data use modifiers indicate additional conditions for use.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000017</oboInOwl:id>
<rdfs:label xml:lang="en">data use modifier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000018</oboInOwl:id>
<oboInOwl:shorthand>NPUNCU</oboInOwl:shorthand>
<rdfs:label xml:lang="en">not for profit, non commercial use only</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000019</oboInOwl:id>
<oboInOwl:shorthand>PUB</oboInOwl:shorthand>
<rdfs:label xml:lang="en">publication required</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).</obo:IAO_0000115>
<oboInOwl:id>DUO:0000020</oboInOwl:id>
<oboInOwl:shorthand>COL</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">This could be coupled with a string describing the primary study investigator(s).</rdfs:comment>
<rdfs:label xml:lang="en">collaboration required</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000021 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000021">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000021</oboInOwl:id>
<oboInOwl:shorthand>IRB</oboInOwl:shorthand>
<rdfs:label xml:lang="en">ethics approval required</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000022">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/DUO_0000010"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GAZ_00000448"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use is limited to within a specific geographic region.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000022</oboInOwl:id>
<oboInOwl:shorthand>GS</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">This should be coupled with an ontology term describing the geographical location the restriction applies to.</rdfs:comment>
<rdfs:label xml:lang="en">geographical restriction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that requestor agrees not to publish results of studies until a specific date.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">publication embargo</obo:IAO_0000118>
<oboInOwl:id>DUO:0000024</oboInOwl:id>
<oboInOwl:shorthand>MOR</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">This should be coupled with a date specified as ISO8601</rdfs:comment>
<rdfs:label xml:lang="en">publication moratorium</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000025 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000025">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use is approved for a specific number of months.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000025</oboInOwl:id>
<oboInOwl:shorthand>TS</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">This should be coupled with an integer value indicating the number of months.</rdfs:comment>
<rdfs:label xml:lang="en">time limit on use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000026">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use is limited to use by approved users.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000026</oboInOwl:id>
<oboInOwl:shorthand>US</oboInOwl:shorthand>
<rdfs:label xml:lang="en">user specific restriction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use is limited to use within an approved project.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000027</oboInOwl:id>
<oboInOwl:shorthand>PS</oboInOwl:shorthand>
<rdfs:label xml:lang="en">project specific restriction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000028 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000028">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use is limited to use within an approved institution.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000028</oboInOwl:id>
<oboInOwl:shorthand>IS</oboInOwl:shorthand>
<rdfs:label xml:lang="en">institution specific restriction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that the requestor must return derived/enriched data to the database/resource.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000029</oboInOwl:id>
<oboInOwl:shorthand>RTN</oboInOwl:shorthand>
<rdfs:label xml:lang="en">return to database or resource</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000031">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:DUO_0000041>method development</obo:DUO_0000041>
<obo:IAO_0000115>An investigation concerning development of methods, algorithms, software or analytical tools.</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000031</oboInOwl:id>
<rdfs:label>method development</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000032">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:DUO_0000041>population research</obo:DUO_0000041>
<obo:IAO_0000115>An investigation concerning a specific population group.</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000032</oboInOwl:id>
<rdfs:comment>Should be paired with the an ontology term representing this population (e.g., xxx).</rdfs:comment>
<rdfs:label>population research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000033 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000033">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:DUO_0000041>ancestry research</obo:DUO_0000041>
<obo:IAO_0000115>An investigation concerning ancestry or population origins.</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000033</oboInOwl:id>
<rdfs:label>ancestry research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000034 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000034">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:DUO_0000041>age category research</obo:DUO_0000041>
<obo:IAO_0000115>An investigation concerning specific age categories.</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000034</oboInOwl:id>
<rdfs:comment>Should be paired with the an ontology term representing this population (e.g., xxx).</rdfs:comment>
<rdfs:label>age category research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000035 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000035">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:DUO_0000041>gender category research</obo:DUO_0000041>
<obo:IAO_0000115>An investigation concerning specific gender categories.</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000035</oboInOwl:id>
<rdfs:comment>Should be paired with the an ontology term representing this population (e.g., xxx).</rdfs:comment>
<rdfs:label>gender category research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000036 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000036">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:DUO_0000041>research control</obo:DUO_0000041>
<obo:IAO_0000115>An investigation concerning use of data as reference or control material.</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000036</oboInOwl:id>
<rdfs:label>research control</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000037 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000037">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:DUO_0000041>biomedical research</obo:DUO_0000041>
<obo:IAO_0000115>An investigation concerning health, medical, or biomedical research.</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000037</oboInOwl:id>
<rdfs:label>biomedical research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000038 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000038">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000037"/>
<obo:DUO_0000041>genetic research</obo:DUO_0000041>
<obo:IAO_0000115>Biomedical research concerning genetics (i.e., the study of genes, genetic variations and heredity).</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000038</oboInOwl:id>
<rdfs:label>genetic research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000039 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000039">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000037"/>
<obo:DUO_0000041>drug development research</obo:DUO_0000041>
<obo:IAO_0000115>Biomedical research concerning drug development.</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000039</oboInOwl:id>
<rdfs:label>drug development research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000040 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000040">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000037"/>
<obo:DUO_0000041>disease category research</obo:DUO_0000041>
<obo:IAO_0000115>Biomedical research research concerning specific disease/s</obo:IAO_0000115>
<obo:IAO_0000232>This definition is a placeholder as a result of meetings at ICBO2018.</obo:IAO_0000232>
<oboInOwl:id>DUO:0000040</oboInOwl:id>
<rdfs:label>disease category research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000042 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000042">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000001"/>
<obo:IAO_0000115 xml:lang="en">This data use permission indicates that use is allowed for general research use for any research purpose.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000042</oboInOwl:id>
<oboInOwl:shorthand>GRU</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">This includes but is not limited to: health/medical/biomedical purposes, fundamental biology research, the study of population origins or ancestry, statistical methods and algorithms development, and social-sciences research.</rdfs:comment>
<rdfs:label xml:lang="en">general research use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000043 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000043">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000017"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use is allowed for clinical use and care.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000043</oboInOwl:id>
<oboInOwl:shorthand>CC</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">Clinical Care is defined as Health care or services provided at home, in a healthcare facility or hospital. Data may be used for clinical decision making.</rdfs:comment>
<rdfs:label xml:lang="en">clinical care use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000045 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000045">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000018"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use of the data is limited to not-for-profit organizations.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000045</oboInOwl:id>
<oboInOwl:shorthand>NPU</oboInOwl:shorthand>
<rdfs:label xml:lang="en">not for profit organisation use only</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DUO_0000046 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DUO_0000046">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DUO_0000018"/>
<obo:IAO_0000115 xml:lang="en">This data use modifier indicates that use of the data is limited to not-for-profit use.</obo:IAO_0000115>
<oboInOwl:id>DUO:0000046</oboInOwl:id>
<oboInOwl:shorthand>NCU</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">This indicates that data can be used by commercial organisations for research purposes, but not commercial purposes.</rdfs:comment>
<rdfs:label xml:lang="en">non-commercial use only</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ENVO_00010483 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00010483">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111>environmental material</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A material entity which other material entities in an environmental system are primarily or partially composed of.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/envo.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>environmental material</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ERO_0000333 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ERO_0000333">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000098"/>
<obo:IAO_0000115 xml:lang="en">Data containing moving pictures stored in digital and analog formats.</obo:IAO_0000115>
<rdfs:label xml:lang="en">video</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GAZ_00000448 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GAZ_00000448">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GEO_000000400 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GEO_000000400">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">An organization that governs the people living in a particular geographical region or aggregate of geographical regions. The geographical region it governs can change over time (such as the westward expansion of the United States and the addition of Hawaii). Note: this definition was taken over from "geopolitical organization".</obo:IAO_0000115>
<rdfs:label xml:lang="en">governmental organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GO_0007565 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0007565">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<oboInOwl:hasDbXref>Wikipedia:Gestation</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>gestation</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym>carrying of young</oboInOwl:hasRelatedSynonym>
<oboInOwl:id>GO:0007565</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.oboInOwllibrary.org/oboInOwl/go#goslim_chembl"/>
<rdfs:label>female pregnancy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000111 xml:lang="en">conditional specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that specifies what should happen if the trigger condition is fulfilled.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000349</obo:IAO_0000119>
<rdfs:label xml:lang="en">conditional specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000009"/>
<obo:IAO_0000111 xml:lang="en">measurement unit label</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples of measurement unit labels are liters, inches, weight per volume.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: a term measurement unit was
proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and
Cristian Cocos, and subsequently moved to IAO where the objective for
which the original term was defined was satisfied with the definition
of this, different, term.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">measurement unit label</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000111 xml:lang="en">objective specification</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: original definition when imported from OBI read: "objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed."</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2014-03-31: In the example of usage ("In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Answers the question, why did you do this experiment?</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Barry Smith</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">goal specification</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process/Roles Branch</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000217</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">objective specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">narrative object</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples of narrative objects are reports, journal articles, and patents submission.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A narrative object is an information content entity that is a set of propositions.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">agree - DENRIE. Issue(alan) do we only mean text? What about a story told by mime. Does music count? (no) what about an oral report. Regarding definition, saying it is a set of propositions means we loose the idea that wording matters. Maybe adjust saying a narrative object has some relationshop to a set of propositions</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000013</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">narrative object</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000112 xml:lang="en">Pour the contents of flask 1 into flask 2</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that describes an action the bearer will take.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process branch</obo:IAO_0000119>
<rdfs:label xml:lang="en">action specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000008">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label>obsolete_artifact</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">datum label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">GROUP: IAO</obo:IAO_0000117>
<obo:IAO_0000232>9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum.
</obo:IAO_0000232>
<rdfs:label xml:lang="en">datum label</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<obo:IAO_0000111 xml:lang="en">software</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">Software is a plan specification composed of a series of instructions that can be
interpreted by or directly executed by a processing unit.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP: OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">software</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000012">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">obsolete_digital entity</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
Superclass was 'digitial quality'</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000261</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete2_digital entity</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000088"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000311"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000444"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000444"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">journal article</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples are articles published in the journals, Nature and Science. The content can often be cited by reference to a paper based encoding, e.g. Authors, Title of article, Journal name, date or year of publication, volume and page number.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A report that is published in a journal.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000159</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">journal article</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000015">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000111 xml:lang="en">information carrier</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A quality of an information bearer that imparts the information content</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'.</obo:IAO_0000116>
<obo:IAO_0000116>2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<rdfs:label xml:lang="en">information carrier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
<obo:IAO_0000111 xml:lang="en">model number</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A model number is an information content entity specifically borne by catalogs, design specifications, advertising materials, inventory systems and similar that is about manufactured objects of the same class. The model number is an alternative term for the class. The manufactered objects may or may not also bear the model number. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">manufactered items may have more than one model number, sometimes by rebranding, or because companies are sold and the products issued new model numbers</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person: Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">model number</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000018">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label>obsolete_material_entity</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000019">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">binary digital entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">MS Word document, ZIP file, DICOM file, JPEG file</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text characters.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
Superclass was 'digital entity'</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">digital_entity</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000244</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete2_binary digital entity</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000024">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000112>The length of a ruler.</obo:IAO_0000112>
<obo:IAO_0000115>a unit of measure is the quality of some material entity compared to which another quality is some multiple of.</obo:IAO_0000115>
<obo:IAO_0000117>Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119>Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label>obsolete_unit of measure</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000025 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000025">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<obo:IAO_0000111 xml:lang="en">programming language</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">R, Perl, Java</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A language in which source code is written that is intended to be executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000058</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">programming language</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">data item</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Data items include counts of things, analyte concentrations, and statistical summaries.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.</obo:IAO_0000116>
<obo:IAO_0000116>2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">JAR: datum -- well, this will be very tricky to define, but maybe some
information-like stuff that might be put into a computer and that is
meant, by someone, to denote and/or to be interpreted by some
process... I would include lists, tables, sentences... I think I might
defer to Barry, or to Brian Cantwell Smith
JAR: A data item is an approximately justified approximately true approximate belief</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">data</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label xml:lang="en">data item</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000028 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000028">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">symbol</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">a serial number such as "12324X"</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a stop sign</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a written proper name such as "OBI"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">20091104, MC: this needs work and will most probably change</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2014-03-31: We would like to have a deeper analysis of 'mark' and 'sign' in the future (see https://github.com/information-artifact-ontology/IAO/issues/154).</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: James A. Overton</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">based on Oxford English Dictionary</obo:IAO_0000119>
<rdfs:label xml:lang="en">symbol</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
<obo:IAO_0000111 xml:lang="en">numeral</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A symbol that denotes a number.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<rdfs:label xml:lang="en">numeral</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">information content entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples of information content entites include journal articles, data, graphical layouts, and graphs.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A generically dependent continuant that is about some thing.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).
Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000142</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label xml:lang="en">information content entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000031">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000029"/>
<obo:IAO_0000111 xml:lang="en">integer numeral</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A numeral that denotes an integer</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<rdfs:label xml:lang="en">integer numeral</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000032">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000039"/>
<owl:minCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:minCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000004"/>
<owl:minCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:minCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112 xml:lang="en">10 feet. 3 ml.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: we decided to keep datum singular in scalar measurement datum, as in
this case we explicitly refer to the singular form</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">scalar measurement datum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000033 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000033">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">directive information entity</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An information content entity whose concretizations indicate to their bearer how to realize them in a process.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was "is the specification of a process that can be concretized and realized by an actor" with alternative term "instruction".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">directive information entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000034 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000034">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000001"/>
<obo:IAO_0000111 xml:lang="en">time trigger</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000124"/>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<rdfs:label xml:lang="en">time trigger</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000035 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000035">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">obsolete_study interpretation</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A study interpretation is a textual entity about the implications of a study result. Examples include discussion of whether a hypothesis is false, whether the study failed to address the hypothesis, and whether the study results have led to new hypotheses</obo:IAO_0000115>
<obo:IAO_0000116>2009-03-16: definition was "A conclusion is a narrative object which can be published in a paper summerizing and interpreting a protocol application."</obo:IAO_0000116>
<obo:IAO_0000116>2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">The obsoleting of narrative object required a modest change in the definition of this term. Circularity with "interpretation... interprets" has been removed, using "about the implications" instead.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000118>conclusion</obo:IAO_0000118>
<obo:IAO_0000119>OBI_0000005</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete_study interpretation</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000037 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000037">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">dot plot</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Dot plot of SSC-H and FSC-H.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
<obo:IAO_0000115 xml:lang="en">A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000123</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">dot plot</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000038 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000038">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000309"/>
<obo:IAO_0000111 xml:lang="en">graph</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000240</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">graph</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000047">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">text based digital entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">XML file, C++ source code file</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A text based digital entity is a digital entity that is encoded so that it only contains text characters.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digital document'</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">digital_entity</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000132</obo:IAO_0000119>
<obo:IAO_0000119>group:OBI</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete2_text based digital entity</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000055 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000055">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000001"/>
<obo:IAO_0000111 xml:lang="en">rule</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">example to be added</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A rule is an executable which guides, defines, restricts actions.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">MSI</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PRS</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0500021</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">PRS</obo:IAO_0000119>
<rdfs:label xml:lang="en">rule</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000057 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000057">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">contour plot</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Contour plot of SSC-H, FSC-H, and FL1-H.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
<obo:IAO_0000116 xml:lang="en">generically_dependent_continuants</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000246</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:Flow Cytometry community</obo:IAO_0000119>
<rdfs:label xml:lang="en">contour plot</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000059 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000059">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">report figure</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000124"/>
<obo:IAO_0000115 xml:lang="en">A report figure is a report display element that has some aspect of illustration, but may be a composite of figures, images, and other elements</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">I prepended the 'report ' to make it clear that we mean parts of reports here. We may want a more generic version of 'figure', in which case this would become a defined class - figure and part_of some report</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Replaced by defined version of figure</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000027</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete2_report figure</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000064 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000064">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<obo:IAO_0000111 xml:lang="en">algorithm</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000270</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)</obo:IAO_0000119>
<rdfs:label xml:lang="en">algorithm</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000065 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000065">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000064"/>
<obo:IAO_0000111 xml:lang="en">software interpreter</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">R program, Perl interpreter, Java virtual machine</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A software interpreter is a software application that executes some specified input software.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Do we care? Jennifer: Yes, there was a particular version of R that had a bug and it was fixed later. That would imply that we mean specific version of an interpreter. So an instance of this would be a particular version of the interpreter</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000199</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">software interpreter</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000078 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078">
<owl:equivalentClass>
<owl:Class>
<owl:oneOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000002"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000120"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000121"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000122"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000123"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000124"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000125"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000423"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000428"/>
</owl:oneOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
<obo:IAO_0000111 xml:lang="en">curation status specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000266</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">curation status specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000079 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000079">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">density plot</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Density plot of SSC-H and FSC-H.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
<obo:IAO_0000115 xml:lang="en">A density plot is a report graph which is a graphical representation of data where the tint of a particular pixel corresponds to some kind of function corresponding the the amount of data points relativelly with their distance from the the pixel.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000179</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:Flow Cytometry community</obo:IAO_0000119>
<rdfs:label xml:lang="en">density plot</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000088 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000088">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000111 xml:lang="en">report</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples of reports are gene lists and investigation reports. These are not published (journal) articles but may be included in a journal article.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record).</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: comment from Darren Natale: I am slightly uneasy with the sentence "Topic of the report is on
something that has completed." Should it be restricted to those things
that are completed? For example, a progress report is (usually) about
something that definitely has *not* been completed, or may include
(only) projections. I think the definition would not suffer if the
whole sentence is deleted.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: this was report of results with definition: A report is a narrative object that is a formal statement of the results of an investigation, or of any matter on which definite information is required, made by some person or body instructed or required to do so.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'document'. Alan restored as there are OBI dependencies and this merits further discussion</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">disagreement about where reports go. alan: only some gene lists are reports. Is a report all the content of some document? The example of usage suggests that a report may be part of some article. Term needs clarification</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP: OBI</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000099</obo:IAO_0000119>
<rdfs:label xml:lang="en">report</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000091 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000091">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">report element</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A report element is a narrative object in which information is presented and consumed by a human being, and is part of a report. Examples of report elements are figure (dot plot), table, text portion (may include a movie or audio clip on a web page).</obo:IAO_0000115>
<obo:IAO_0000116>2009-03-16: needs some more work (clarify relations).</obo:IAO_0000116>
<obo:IAO_0000116>2009-03-16: was report display element with definition: A report display element is a narrative object that is part of a report. Report display elements are set off from the textual parts of a report and are typically given a label(e.g. Figure 2) which is used to refer to the element from the text. Typically the 2d layout is part of the identity of such elements.</obo:IAO_0000116>
<obo:IAO_0000116>2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.</obo:IAO_0000116>
<obo:IAO_0000116>2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion</obo:IAO_0000116>
<obo:IAO_0000116>Replaced by textual entity and figure</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">There will be some issue here about whether these are defined classes. As intended these are meant to denote the parts of the report that are not textual but are typically boxed and set within the text, labelled with some identifier, and referred to in the text</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI</obo:IAO_0000119>
<obo:IAO_0000119>OBI_0000001</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete_report element</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000093 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000093">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">binary executable</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions. (derived from Wikipedia, Nov 1, 2007)</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digital entity'</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000222</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete2_binary executable</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000096 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000096">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000111 xml:lang="en">source code module</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The written source code that implements part of an algorithm. Test - if you know that it was written in a specific language, then it can be source code module. We mean here, roughly, the wording of a document such as a perl script.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A source code module is a directive information entity that specifies, using a programming language, some algorithm.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000039</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">source code module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000097 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000097">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">report table</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
<obo:IAO_0000115 xml:lang="en">A report table is a report display element consisting of a matrix of cells layed out in a grid, some set of which are filled with some information content</obo:IAO_0000115>
<obo:IAO_0000116>2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity table'. Alan restored as there are OBI dependencies and this merits further discussion</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000265</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete_report table</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000098 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000098">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000111 xml:lang="en">data format specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A data format specification is the information content borne by the document published defining the specification.
Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: term imported from OBI_0000187, which had original definition "A data format specification is a plan which organizes
information. Example: The ISO document specifying what encompasses an
XML document; The instructions in a XSD file"</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000187</obo:IAO_0000119>
<rdfs:label xml:lang="en">data format specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000100 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000100">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000111 xml:lang="en">data set</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type</obo:IAO_0000116>
<obo:IAO_0000116>2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000042</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000101 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000101">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000308"/>
<obo:IAO_0000111 xml:lang="en">image</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Allyson</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000030</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">image</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000102 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000102">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000111 xml:lang="en">data about an ontology part</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Data about an ontology part is a data item about a part of an ontology, for example a term</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">data about an ontology part</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000104 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000104">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000007"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">plan specification</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2014-03-31: A plan specification can have other parts, such as conditional specifications.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process branch</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000344</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment xml:lang="en">2/3/2009 Comment from OBI review.
Action specification not well enough specified.
Conditional specification not well enough specified.
Question whether all plan specifications have objective specifications.
Request that IAO either clarify these or change definitions not to use them</rdfs:comment>
<rdfs:label xml:lang="en">plan specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000105 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000105">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">digital document</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A digital document is a digital entity consisting of an electronic file which can be rendered into human-readable form by one or more computational applications. The digital document does not refer to the information content of the document but to an instance of the file.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digial entity'</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000195</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete2_digital document</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000109 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000109">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0001938"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001933"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">measurement datum</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2/2/2009 is_specified_output of some assay?</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000305</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">measurement datum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000128 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000128">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000121"/>
<obo:IAO_0000116>_identifier is a container under information content entity for collecting types of terms to indicate a specific instance or clas of what was used or participated in an investigation. Identifiers are borne by a product or its packaging, and can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.
Note: everybody agreed that identifier is probably a too general term. We however felt that it would be appropriate to group "identifiying" terms under some kind of umbrella. We therefore propose to use _identifier for that purpose. As per OBI conventions, the _ prefixing identifier indicates that this is a helper class and shouldn't be considered as final.</obo:IAO_0000116>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label>obsolete_identifier</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000129 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000129">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
<obo:IAO_0000111 xml:lang="en">version number</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Note: we feel that at the moment we are happy with a general version number, and that we will subclass as needed in the future. For example, see 7. genome sequence version</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">GROUP: IAO</obo:IAO_0000117>
<rdfs:label xml:lang="en">version number</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000131 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000131">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
<obo:IAO_0000111 xml:lang="en">serial number</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A serial number is an information content entity which is a unique sequence of characters borne by part of manufactured product or its packaging that is assigned to each individual in some class of products, and so can serve as a way to identify an individual product within the class. Serial numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Note: during the call there was some confusion between serial number and model number. We agreed that it would be very helpful for all those terms to have example of usages - please add if you have any :-)</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">GROUP: IAO</obo:IAO_0000117>
<rdfs:label xml:lang="en">serial number</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000132 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000132">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
<obo:IAO_0000111 xml:lang="en">lot number</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A lot number is an information content entity which is an identical sequence of character borne by part of manufactured product or its packaging for each instances of a product class in a discrete batch of an item. Lot numbers are usually assigned to each separate production run of an item. Manufacturing as a lot might be due to a variety of reasons, for example, a single process during which many individuals are made from the same portion of source material. Lot numbers can be encoded in a pattern of other information objects, such as bar codes, numerals, or patterns of dots.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">GROUP: IAO</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">batch number</obo:IAO_0000118>
<rdfs:label xml:lang="en">lot number</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000140 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000140">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A settings datum is a datum that denotes some configuration of an instrument.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2/3/2009 Feedback from OBI
This should be a "setting specification". There is a question of whether it is information about a realizable or not.
Pro other specification are about realizables.
Cons sometimes specifies a quality which is not a realizable.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Alan grouped these in placeholder for the moment. Name by analogy to measurement datum.</obo:IAO_0000116>
<rdfs:label xml:lang="en">setting datum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000141 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000141">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000116>3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4</obo:IAO_0000116>
<obo:IAO_0000116>Need to rework digital entity. Digital quality was suggested by Barry.</obo:IAO_0000116>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label>obsolete_digital quality</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000144 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000144">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">conclusion textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/09/28 Alan Ruttenberg. Fucoidan-use-case</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009/10/23 Alan Ruttenberg: We need to work on the definition still</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">conclusion textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000178 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000178">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111 xml:lang="en">material information bearer</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a brain</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a hard drive</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A material entity in which a concretization of an information content entity inheres.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">GROUP: IAO</obo:IAO_0000117>
<rdfs:label xml:lang="en">material information bearer</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000179 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000179">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">histogram</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A histogram is a report graph which is a statistical description of a
distribution in terms of occurrence frequencies of different event classes.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:James Malone</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">histogram</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000180 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000180">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">heatmap</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A heatmap is a report graph which is a graphical representation of data
where the values taken by a variable(s) are shown as colors in a
two-dimensional map.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:James Malone</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">heatmap</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000181 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000181">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">Venn diagram</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A Venn diagram is a report graph showing all hypothetically possible
logical relations between a finite collection of sets.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:James Malone</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://en.wikipedia.org/wiki/Venn_diagram</obo:IAO_0000119>
<rdfs:label xml:lang="en">Venn diagram</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000182 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000182">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">obsolete_survival curve</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A survival curve is a report graph which is a graphical representation of data where the percentage of survival is plotted as a function of time.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:James Malone</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.graphpad.com/www/book/survive.htm</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete_survival curve</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000183 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000183">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">dendrogram</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Dendrograms are often used in computational biology to
illustrate the clustering of genes.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A dendrogram is a report graph which is a tree diagram
frequently used to illustrate the arrangement of the clusters produced by a
clustering algorithm.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:James Malone</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://en.wikipedia.org/wiki/Dendrogram</obo:IAO_0000119>
<rdfs:label xml:lang="en">dendrogram</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000184 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000184">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">scatter plot</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Comparison of gene expression values in two samples can be displayed in a scatter plot</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:James Malone</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">scattergraph</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">WEB: http://en.wikipedia.org/wiki/Scatterplot</obo:IAO_0000119>
<rdfs:label xml:lang="en">scatter plot</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000185 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000185">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000101"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A photograph is created by projecting an image onto a photosensitive surface such as a chemically treated plate or film, CCD receptor, etc.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Joanne Luciano</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://en.wiktionary.org/wiki/photograph</obo:IAO_0000119>
<rdfs:label xml:lang="en">photograph</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000186 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000186">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000185"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000178"/>
<obo:IAO_0000111 xml:lang="en">photographic print</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A photographic print is a material entity upon which a photograph generically depends.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">photographic print</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000225 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000225">
<owl:equivalentClass>
<owl:Class>
<owl:oneOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000227"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000228"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000229"/>
</owl:oneOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
<obo:IAO_0000111 xml:lang="en">obsolescence reason specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">obsolescence reason specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000300 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000300">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">MC, 2009-09-14 (following IAO call 2009-09-01): textual entities live at the FRBR (http://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records) manifestation level. Everything is significant: line break, pdf and html versions of same document are different textual entities.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">text</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000301 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000301">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">citation</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Verspoor, K., Cohen, KB., Hunter, L. Textual characteristics of traditional and Open Access scientific journals are similar, BMC Bioinformatics 2009, 10:183.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A textual entity intended to identify a particular publication.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">citation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000302 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000302">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000590"/>
<obo:IAO_0000111 xml:lang="en">author identification</obo:IAO_0000111>
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<!-- http://purl.obolibrary.org/obo/IAO_0000303 -->
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<obo:IAO_0000112 xml:lang="en">University of Colorado Denver School of Medicine</obo:IAO_0000112>
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<obo:IAO_0000115 xml:lang="en">A textual entity intended to identify a particular institution</obo:IAO_0000115>
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<!-- http://purl.obolibrary.org/obo/IAO_0000304 -->
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<obo:IAO_0000111 xml:lang="en">caption</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Figure 1: A system diagram describing the modules of the Hanalyzer. Reading methods (green) take external sources of knowledge (blue) and extract information from them, either by parsing structured data or biomedical language processing to extract information from unstructured data. Reading modules are responsible for tracking the provenance of all knowledge. Reasoning methods (yellow) enrich the knowledge that results from reading by, for example, noting two genes that are annotated to the same ontology term or database entry. All knowledge sources, read or reasoned, are assigned a reliability score, and all are combined using that score into a knowledge network (orange) that represents the integration of all sorts of relationship between a pair of genes and a combined reliability score. A data network (also orange) is created from experimental results to be analyzed. The reporting modules (pink) integrate the data and knowledge networks, producing visualizations that can be queried with the associated drill-down tool.</obo:IAO_0000112>
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<obo:IAO_0000115 xml:lang="en">A textual entity that describes a figure</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">caption</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000305 -->
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<obo:IAO_0000111 xml:lang="en">document title</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Textual characteristics of traditional and Open Access scientific journals are similar</obo:IAO_0000112>
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<obo:IAO_0000115 xml:lang="en">A textual entity that names a document</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
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<!-- http://purl.obolibrary.org/obo/IAO_0000306 -->
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<obo:IAO_0000111 xml:lang="en">table</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">| T F
--+-----
T | T F
F | F F</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A textual entity that contains a two-dimensional arrangement of texts repeated at regular intervals across a spatial range, such that the spatial relationships among the constituent texts expresses propositions</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">table</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000307 -->
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<obo:IAO_0000111 xml:lang="en">table of abbreviations</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">IAO information artifact ontology
OBI ontology of biomedical investiations
GO gene ontology</obo:IAO_0000112>
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<obo:IAO_0000115 xml:lang="en">A table where the constituent texts are abbreviations and their expansions</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">table of abbreviations</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000308 -->
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<obo:IAO_0000111 xml:lang="en">figure</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Any picture, diagram or table</obo:IAO_0000112>
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<obo:IAO_0000115 xml:lang="en">An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">figure</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000309 -->
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000308"/>
<obo:IAO_0000111 xml:lang="en">diagram</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">A molecular structure ribbon cartoon showing helices, turns and sheets and their relations to each other in space.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A figure that expresses one or more propositions</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">diagram</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000310 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000310">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">document</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">A journal article, patent application, laboratory notebook, or a book</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A collection of information content entities intended to be understood together as a whole</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">document</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000311 -->
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<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000310"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000444"/>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000111 xml:lang="en">publication</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">journal article, newspaper story, book, etc.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A document that is the output of a publishing process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">published document</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/232"/>
<rdfs:comment xml:lang="en">Revisit the term in Octorber 2020. Improve the defintion.</rdfs:comment>
<rdfs:label xml:lang="en">publication</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000312 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000312">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000311"/>
<rdfs:subClassOf>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">publication about an investigation</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Most scientific journal articles</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A publication that is about an investigation</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">scientific publication</obo:IAO_0000118>
<rdfs:label xml:lang="en">publication about an investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000313 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000313">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000111 xml:lang="en">patent</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">US Patent 6,449,603</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A document that has been accepted by a patent authority</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">patent</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000314 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000314">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">document part</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">An abstract, introduction, method or results section.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that is part of a document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">document part</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000315 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000315">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
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<obo:IAO_0000111 xml:lang="en">abstract</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The profusion of high-throughput instruments and the explosion of new results in the scientific literature, particularly in molecular biomedicine, is both a blessing and a curse to the bench researcher. Even knowledgeable and experienced scientists can benefit from computational tools that help navigate this vast and rapidly evolving terrain. In this paper, we describe a novel computational approach to this challenge, a knowledge-based system that combines reading, reasoning and reporting methods to facilitate analysis of experimental data. Reading methods extract information from external resources, either by parsing structured data or biomedical language processing to extract information from unstructured data, and track knowledge provenance. Reasoning methods enrich the knowledge that results from reading by, for example, noting two genes that are annotated to the same ontology term or database entry. Reasoning is also used to combine all sources into a knowledge network that represents the integration of all sorts of relationships between a pair of genes, and to calculate a combined reliability score. Reporting methods combine the knowledge network with a congruent network constructed from experimental data and visualize the combined network in a tool that facilitates the knowledge-based analysis of that data.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A summary of the entire document that is substantially smaller than the document it summarizes. It is about the document it summarizes.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">precis</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">abstract</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000316 -->
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
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</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">introduction to a publication about an investigation</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Section labelled 'introduction' of a typical scientific journal article</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a publication about an investigation that is about the objective specification (why the investigation is being done)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">background</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">introduction</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">overview</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">introduction to a publication about an investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000317 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000317">
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<rdfs:subClassOf>
<owl:Restriction>
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">methods section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'Methods' or 'Materials and Methods' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a publication about an investigation that is about the study design of the investigation</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">experimental</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">experimental methods</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">experimental procedures</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">experimental section</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">method</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">methodology</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">methods</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">methods section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000318 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000318">
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<rdfs:subClassOf>
<owl:Restriction>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000471"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">results section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'results' in a typical scientific journal article</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a publication about an investigation that is about a study design execution</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">results</obo:IAO_0000118>
<rdfs:label xml:lang="en">results section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000319 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000319">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000111 xml:lang="en">discussion section of a publication about an investigation</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a publication about an investigation that is about the study interpretation of the investigation</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">discussion</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">discussion section</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">discussions</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">discussion section of a publication about an investigation</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000320 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000320">
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<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">references section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The list of citations found at the end of a scientific publication, grant proposal or patent application, sometimes called "literature cited" or "bibliography"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a document that has citations as parts</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">literature cited</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">reference</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">reference list</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">references</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">references section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000321 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000321">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000302"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">author list</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Lawrence Hunter and Kevin Brettonel Cohen</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a document that enumerates the authors of the document</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">author list</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000322 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000322">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
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</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">institution list</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The University of Colorado Denver School of Medicine and the University of Colorado Boulder.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a document that has parts that are institution identifications associated with the authors of the document</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">institution list</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000323 -->
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<obo:IAO_0000111 xml:lang="en">author contributions section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">LH conceived of the hypothesis, designed the study and contributed to the writing of the manuscript. KBC executed the experiments, analyzed the data, and contributed to the writing of the manuscript.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a publication that is about the specific contributions of each author</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">author contributions</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">authors' contribution</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">authors' contributions</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">authors' roles</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">contributions by the authors</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">contributorship</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">author contributions section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000324 -->
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<obo:IAO_0000111 xml:lang="en">acknowledgements section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The authors wish to thank Alan Ruttenberg for his constructive comments about an earlier draft of this manuscript</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">Part of a publication that is about the contributions of people or institutions other than the authors.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">acknowledgement</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">acknowledgements</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">acknowledgment</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">acknowledgments</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">acknowledgements section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000325 -->
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">footnote</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The referent in the text is usually indicated by a special typographic character such as * or a superscripted number, which is also used to indicate the footnote that refers to that text.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a document that is about a specific other part of the document. Usually footnotes are spatially segregated from the rest of the document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">endnote</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">footnotes</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">footnote</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000326 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000326">
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<obo:IAO_0000111 xml:lang="en">supplementary material to a document</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A part of a document that is segregated from the rest of the document due to its size</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">additional file</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">additional files</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">additional information</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">appendix</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">electronic supplementary material</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">electronic supplementary materials</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supplemental data</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supplemental information</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supplemental material</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supplementary data</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supplementary files</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supplementary information</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supplementary material</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supplementary materials</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">supporting information</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">supplementary material to a document</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000327 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000327">
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<obo:IAO_0000111 xml:lang="en">table of contents</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A table that relates document parts to specific locations in a document (usually page numbers). This is also a document part (subsumption there should be inferred).</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">table of contents</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000328 -->
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000306"/>
<obo:IAO_0000111 xml:lang="en">table of figures</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A table that relates figures in a document to specific locations in that document (usually page numbers). This is also a document part (subsumption there should be inferred).</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">table of figures</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000329 -->
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<obo:IAO_0000111 xml:lang="en">running title</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A shorter version of a document title</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">running title</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000330 -->
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<obo:IAO_0000111 xml:lang="en">copyright section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">This work is licensed under a Creative Commons Attribution-Share Alike 3.0 United States License.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A document part that describes legal restrictions on making or distributing copies of the document</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Lawrence Hunter</obo:IAO_0000117>
<rdfs:label xml:lang="en">copyright section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000400 -->
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</rdfs:subClassOf>
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<owl:Restriction>
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A cartesian spatial coordinate datum is a representation of a point in a spatial region, in which equal changes in the magnitude of a coordinate value denote length qualities with the same magnitude</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-08-18 Alan Ruttenberg - question to BFO list about whether the BFO sense of the lower dimensional regions is that they are always part of actual space (the three dimensional sort) http://groups.google.com/group/bfo-discuss/browse_thread/thread/9d04e717e39fb617</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000232>AR notes: We need to discuss whether it should include site.</obo:IAO_0000232>
<rdfs:label xml:lang="en">cartesian spatial coordinate datum</rdfs:label>
<rdfs:seeAlso xml:lang="en">http://groups.google.com/group/bfo-discuss/browse_thread/thread/9d04e717e39fb617</rdfs:seeAlso>
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<!-- http://purl.obolibrary.org/obo/IAO_0000401 -->
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</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000404"/>
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A cartesion spatial coordinate datum that uses one value to specify a position along a one dimensional spatial region</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">one dimensional cartesian spatial coordinate datum</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000402 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000402">
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<owl:Restriction>
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A cartesion spatial coordinate datum that uses two values to specify a position within a two dimensional spatial region</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">two dimensional cartesian spatial coordinate datum</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000403 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000403">
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<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000405"/>
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</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000406"/>
<owl:cardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:cardinality>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A cartesion spatial coordinate datum that uses three values to specify a position within a three dimensional spatial region</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">three dimensional cartesian spatial coordinate datum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000408 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000408">
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<owl:Restriction>
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</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A scalar measurement datum that is the result of measurement of length quality</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">length measurement datum</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000409 -->
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<owl:oneOf rdf:parseType="Collection">
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<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000421"/>
</owl:oneOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
<obo:IAO_0000111 xml:lang="en">denotator type</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A denotator type indicates how a term should be interpreted from an ontological perspective.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Barry Smith, Werner Ceusters</obo:IAO_0000119>
<rdfs:label xml:lang="en">denotator type</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000414 -->
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<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A scalar measurement datum that is the result of measurement of mass quality</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/09/28 Alan Ruttenberg. Fucoidan-use-case</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">mass measurement datum</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000415 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000415">
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<obo:IAO_0000111 xml:lang="en">hypothesis textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A textual entity that expresses an assertion that is intended to be tested.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/09/28 Alan Ruttenberg. Fucoidan-use-case</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">hypothesis textual entity</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000416 -->
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<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A scalar measurement datum that is the result of measuring a temporal interval</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/09/28 Alan Ruttenberg. Fucoidan-use-case</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">time measurement datum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000422 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000422">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GAZ_00000448"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A textual entity that is used as directive to deliver something to a person, or organization</obo:IAO_0000115>
<obo:IAO_0000116>2010-05-24 Alan Ruttenberg. Use label for the string representation. See issue https://github.com/information-artifact-ontology/IAO/issues/59</obo:IAO_0000116>
<rdfs:label xml:lang="en">postal address</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000429 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000429">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">email address</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000116 xml:lang="en">Alan Ruttenberg 1/3/2012 - Provisional id, see issue at https://github.com/information-artifact-ontology/IAO/issues/130&thanks=130&ts=1325636583</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Chris Stoeckart</obo:IAO_0000117>
<rdfs:label xml:lang="en">email address</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000442 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000442">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000111 xml:lang="en">author role</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a person or organization that is realized when the bearer participates in the work which is the basis of the document, in the writing of the document, and signs it with their name.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">author role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000443 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000443">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000013"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115>A planned process in which journal articles are read or processed and data items are extracted, typically for further analysis or indexing</obo:IAO_0000115>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label>data item extraction from journal article</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000444 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000444">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Publishing</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/232"/>
<obo:IAO_0000234 xml:lang="en">VEuPathDB</obo:IAO_0000234>
<rdfs:label xml:lang="en">publishing process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000445 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000445">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A document that is in preparation for submission to be published.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">EFO_0001795 in preparation</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/232"/>
<obo:IAO_0000234 xml:lang="en">VEuPathDB</obo:IAO_0000234>
<rdfs:label xml:lang="en">document in preparation for publication</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000572 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000572">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">documenting</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Recording the current temperature in a laboratory notebook. Writing a journal article. Updating a patient record in a database.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which a document is created or added to by including the specified input in it.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">6/11/9: Edited at OBI workshop. We need to be able identify a child form of information artifact which corresponds to something enduring (not brain like). This used to be restricted to physical document or digital entity as the output, but that excludes e.g. an audio cassette tape</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">wikipedia http://en.wikipedia.org/wiki/Documenting</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:ICO_0000091 xml:lang="en">C1548385</obo:ICO_0000091>
<obo:ICO_0000093 xml:lang="en">11609</obo:ICO_0000093>
<rdfs:label xml:lang="en">documenting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000573 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000573">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000038"/>
<obo:IAO_0000111 xml:lang="en">line graph</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A line graph is a type of graph created by connecting a series of data
points together with a line.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">line chart</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">WEB: http://en.wikipedia.org/wiki/Line_chart</obo:IAO_0000119>
<rdfs:label xml:lang="en">line graph</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000574 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000574">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000577"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000579"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112 xml:lang="en">A new pubmed ID being created for a journal article, and the associated pubmed record containing information to the journal article. A license plate number registered at the DMV to be belonging to a specific vehicle and owner. Placing a barcode on a product and entering information in a database that this barcode is assigned.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which a new CRID is created, associated with an entity, and stored in the CRID registry thereby registering it as being associated with some entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2014-05-05: It is the CRID registry that assigns CRIDs, not the users of the registry.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000118>assigning a CRID</obo:IAO_0000118>
<rdfs:label xml:lang="en">assigning a centrally registered identifier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000575 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000575">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000577"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000579"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>Articles in Pubmed are reviewed by curators who add MESH terms to the Pubmed records in order to categorize them better and improve the ability to search for them. </obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which a CRID registry associates an information content entity with a CRID symbol</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000118>associating information with a CRID in the CRID registry</obo:IAO_0000118>
<rdfs:label xml:lang="en">associating information with a centrally registered identifier in its registry</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000576 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000576">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115>a planned process with the objective to establish a system that allows to refer to specific entities of a certain kind and store information about them, by establishing a CRID registry and plan specifications for the process of 1) assigning a CRID and 2) looking up a CRID.</obo:IAO_0000115>
<obo:IAO_0000116>MC, 20101124: deprecated following discussion at IAO call 20101124. Term was deemed not necessary - no use case for now.</obo:IAO_0000116>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label>obsolete_establishing a CRID registry</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000577 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000577">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000578"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112 xml:lang="en">The sentence "The article has Pubmed ID 12345." contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Hogan</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000118>CRID symbol</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">Original proposal from Bjoern, discussions at IAO calls</obo:IAO_0000119>
<rdfs:label xml:lang="en">centrally registered identifier symbol</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000578 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000578">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0020000"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000577"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000579"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112 xml:lang="en">The sentence "The article has Pubmed ID 12345." contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2014-05-05: In defining this term we take no position on what the CRID denotes. In particular do not assume it denotes a *record* in the CRID registry (since the registry might not have 'records').</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Alan, IAO call 20101124: potentially the CRID denotes the instance it was associated with during creation.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Note, IAO call 20101124: URIs are not always CRID, as not centrally registered. We acknowledge that CRID is a subset of a larger identifier class, but this subset fulfills our current needs. OBI PURLs are CRID as they are registered with OCLC. UPCs (Universal Product Codes from AC Nielsen)are not CRID as they are not centrally registered.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Hogan</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000118>CRID</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">Original proposal from Bjoern, discussions at IAO calls</obo:IAO_0000119>
<rdfs:label xml:lang="en">centrally registered identifier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000579 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000579">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000100"/>
<obo:IAO_0000112 xml:lang="en">PubMed is a CRID registry. It has a dataset of PubMed identifiers associated with journal articles. </obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A CRID registry is a dataset of CRID records, each consisting of a CRID symbol and additional information which was recorded in the dataset through a assigning a centrally registered identifier process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Hogan</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000118>CRID registry</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">Original proposal from Bjoern, discussions at IAO calls</obo:IAO_0000119>
<rdfs:label xml:lang="en">centrally registered identifier registry</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000580 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000580">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000577"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000579"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>Going to the PubMed website and entering a PubMed ID in order to retrieve the Pubmed information associated with that ID. </obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which a request to a CRID registry is made to return the information associated with a CRID symbol</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Hogan</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000118>looking up a CRID</obo:IAO_0000118>
<rdfs:label xml:lang="en">looking up a centrally registered identifier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000582 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000582">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000581"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000583"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<rdfs:label xml:lang="en">time stamped measurement datum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000584 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000584">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000100"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000582"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112 xml:lang="en">pmid:20604925 - time-lapse live cell microscopy</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A data set that is an aggregate of data recording some measurement at a number of time points. The time series data set is an ordered list of pairs of time measurement data and the corresponding measurement data acquired at that time.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">experimental time series</obo:IAO_0000118>
<rdfs:label xml:lang="en">time sampled measurement data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000590 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000590">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">written name</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">"Bill Clinton"</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">"The Eiffel Tower"</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">"United States of America"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A textual entity that denotes a particular in reality.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Hogan</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://github.com/information-artifact-ontology/IAO/issues/114</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">The qualifier "written" is to set it apart from spoken names. Also, note the restrictions to particulars. We are not naming universals. We could however, be naming, attributive collections which are particulars, so "All people located in the boundaries of the city of Little Rock, AR on June 18, 2011 at 9:50a CDT" would be a name.</obo:IAO_0000232>
<rdfs:label xml:lang="en">written name</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000591 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000591">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000010"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Michel Dumontier</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://github.com/information-artifact-ontology/IAO/issues/80</obo:IAO_0000119>
<rdfs:label xml:lang="en">software method</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000592 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000592">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000010"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A software module is software composed of a collection of software methods.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanei Courtot</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Michel Dumontier</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://github.com/information-artifact-ontology/IAO/issues/80</obo:IAO_0000119>
<rdfs:label xml:lang="en">software module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000593 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000593">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000010"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Michel Dumontier</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://github.com/information-artifact-ontology/IAO/issues/80</obo:IAO_0000119>
<rdfs:label xml:lang="en">software library</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000594 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000594">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000010"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A software application is software that can be directly executed by some processing unit.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Michel Dumontier</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://github.com/information-artifact-ontology/IAO/issues/80</obo:IAO_0000119>
<rdfs:label xml:lang="en">software application</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000595 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000595">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000010"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A software script is software whose instructions can be executed using a software interpreter.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Michel Dumontier</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://github.com/information-artifact-ontology/IAO/issues/80</obo:IAO_0000119>
<rdfs:label xml:lang="en">software script</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000605 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000605">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">abbreviation textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/):
BAC: Bacterial artificial chromosome; CR: Calretinin; GFAP: Glial fibrillary acidic protein; MAP: Microtubule-associated protein; MRI: Magnetic resonance imaging; NSC: Neural stem cell; PDA: Patent ductus arteriosus; PMG: Polymicrogyria; PNH: Periventricular nodular heterotopia; VSD: Ventricular septal defect.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity listing abbreviations and their expansions that are used in a document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">abbreviation textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000606 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000606">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000605"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">abbreviations section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'abbreviations' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document where abbreviations and their long-forms used within the document are listed.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">abbreviation and acronyms</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">abbreviation list</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">abbreviations</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">abbreviations and acronyms</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">abbreviations list</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">abbreviations used</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">definitions for abbreviations</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">list of abbreviations</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">list of abbreviations used</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">non-standard abbreviations</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">nonstandard abbreviations</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">nonstandard abbreviations and acronyms</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">abbreviations section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000607 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000607">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000608"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">author information section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'author information' in a typical scientific journal article, e.g. in Takon. Ann Gen Psychiatry. 2011; 10: 25. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204268/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about the authors that provides biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">author information</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">authors’ information</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">biographies</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">contributor information</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">author information section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000608 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000608">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">author information textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Takon. Ann Gen Psychiatry. 2011; 10: 25. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204268/):
IT [the author] is the lead paediatrician for ADHD services in East Hertfordshire, UK, where she runs a weekly joint ADHD clinic with the Child and Adolescent psychiatrist and works within an ADHD specialist team. IT also sees children with other neurodisability issues who may have comorbid ADHD, where the presentation may be more complex and challenging to manage. IT has vast experience in managing children with complex ADHD. She has 18 years of experience in paediatrics and also has extensive experience in the use of psychopharmacologic agents in managing children with ADHD.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity expression information about an author of a document. This information may include biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">author information textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000609 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000609">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000610"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">author summary section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'synopsis' in a typical scientific journal article, e.g. in Pendse et al. BMC Genomics. 2013; 14: 136. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608171/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">author summary</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">summary</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">synopsis</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">Article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines)</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">author summary section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000610 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000610">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">author summary textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Pendse et al. BMC Genomics. 2013; 14: 136. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608171/):
The search for genetic risk factors for common human diseases often relies on the use of linkage and association studies to establish correlation between genomic markers and disease risk. These studies require additional functional evaluation of candidate genes, including their possible interaction with diet and environment. The number of candidate genes is typically large and the development of appropriate genetic tools in mammalian systems is slow. By contrast, large-scale genetic screens, using widely available genetic tools, are routinely conducted in the fruit fly Drosophila melanogaster. In this study, we used Drosophila to screen candidate genes identified in human genome-wide scans as associated with risk of metabolic abnormalities such as type 2 diabetes. We show that a number of human candidate genes have fly orthologs that play an important role in Drosophila tolerance to high dietary sucrose. We further explored some of the specific metabolic abnormalities that can result when these genes’ activities are reduced in flies, focusing on a gene we call dHHEX (CG7056), the fly ortholog of human HHEX.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers, e.g as described in the article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">author summary textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000611 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000611">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000612"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">availability section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'availability and requirements' in a typical scientific journal article, e.g. Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about a resource described in the document, e.g. software, that describes where and/or how that resource can be obtained.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">availability</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">availability of data</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">data archiving</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">data availability</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">data availability statement</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">data sharing statement</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">availability section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000612 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000612">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">availability textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/):
Project home page:http://krux.googlecode.com</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity expressing the location of a resource, e.g. software, or the manner in which a resource can be obtained.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">availability textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000613 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000613">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000614"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">case report section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'case report' in a typical scientific journal article, e.g. in Taglia et al. Acta Myol. 2012 Dec; 31(3): 201–203. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631801/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about the medical history of a specific patient as it relates to the topic of the document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">case presentation</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">case report</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">case report section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000614 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000614">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">case report textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Excerpt from Taglia et al. Acta Myol. 2012 Dec; 31(3): 201–203. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631801/):
The patient is a 50-year-old man. His medical history was not contributory. At the age of 37 years, he complained of persistent fatigue and dyspnoea even for modest efforts and oedema of lower limbs. The patient was examined at the department of internal medicine of the local hospital, and hospitalised with a diagnosis of dilated cardiomyopathy probably consequence of a myocarditis process. Soon after he was transferred to the cardiologic department of the regional hospital, and pharmacologically treated for heart failure and pulmonary hypertension.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity that expresses a detailed account of a portion of the medical history for a specific patient.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">case report textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000615 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000615">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000144"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">conclusion section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'conclusion' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document used to summarize the findings discussed in the document. The conclusion section is typically found near the end of a document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">concluding remarks</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">conclusion</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">conclusions</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">findings</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">summary</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">conclusion section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000616 -->
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<obo:IAO_0000111 xml:lang="en">conflict of interest section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'conflict of interest statement' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document used to declare any competing interests regarding the authors and/or funding organization for the work described in the document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">authors' disclosures of potential conflicts of interest</obo:IAO_0000118>
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<obo:IAO_0000118 xml:lang="en">conflict of interests</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">conflicts of interest</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">declaration of competing interest</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">declaration of competing interests</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">declaration of interest</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">declaration of interests</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">disclosure of conflict of interest</obo:IAO_0000118>
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<rdfs:label xml:lang="en">conflict of interest section</rdfs:label>
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<obo:IAO_0000112 xml:lang="en">SD [an author] is a Merck employee and Merck is the sponsor of this study. [Taken from 'Effects of obstructive sleep apnoea risk on postoperative respiratory complications: protocol for a hospital-based registry study' Shin et al. 2016 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4735131/)] </obo:IAO_0000112>
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<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
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<obo:IAO_0000111 xml:lang="en">consent section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'consent' in a typical scientific journal article, e.g. Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about the consent process that was used to enroll patients in a study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">consent</obo:IAO_0000118>
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<rdfs:label xml:lang="en">consent section</rdfs:label>
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<obo:IAO_0000111 xml:lang="en">consent textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/):
Written informed consent was obtained from the patient’s parents for publication of this Case report and any accompanying images. A copy of the written consent is available for review by the Editor-in chief of this journal.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity that documents the consenting process used to enroll patients in a study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">consent textual entity</rdfs:label>
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<obo:IAO_0000111 xml:lang="en">ethical approval section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'ethical approval' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about the governance body responsible for approving the work discussed in a document on an ethical basis.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">ethical approval</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">ethical requirements</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">ethics</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">ethics statement</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
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<rdfs:label xml:lang="en">ethical approval section</rdfs:label>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000621">
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<obo:IAO_0000111 xml:lang="en">ethical approval textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From McLean et al. Br J Gen Pract. 2014 Jul; 64(624): e440–e447 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073730/):
The NHS National Research Ethics Service had previously approved the use of these anonymised data for research purposes and this analysis did not require independent review.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity that documents the ethical approval of some study design.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">ethical approval textual entity</rdfs:label>
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<obo:IAO_0000111 xml:lang="en">figures section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'figures' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document that contains one or more figures.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">figures</obo:IAO_0000118>
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<rdfs:label xml:lang="en">figures section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000623 -->
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<obo:IAO_0000111 xml:lang="en">funding source declaration section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'funding' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document used to detail information regarding the source of funding used in support of the generation of the document content.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">financial support</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">funding</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">funding information</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">funding sources</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">funding statement</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">funding/support</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">grants</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">role of the funding source</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">source of funding</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">sources of funding</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">study funding</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">funding source declaration section</rdfs:label>
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<obo:IAO_0000111 xml:lang="en">funding souce declaration textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Stephan et al. Accid Anal Prev. 2011 May; 43(3): 1062–1067. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3062852/):
This study was supported by the International Collaborative Research Grants Scheme with joint grants from the Wellcome Trust UK (GR071587MA) and the Australian NHMRC (268055). The funding sources played no role in study design, data collection, analysis or interpretation, writing the report, or the decision to submit the paper for publication.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity documenting the source of funding that supported some study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">funding source declaration textual entity</rdfs:label>
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<obo:IAO_0000111 xml:lang="en">future directions section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'future directions' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document detailing extensions of the described work that may be implemented at some future point in time.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">future challenges</obo:IAO_0000118>
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<obo:IAO_0000118 xml:lang="en">future developments</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future directions</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future outlook</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future perspectives</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future plans</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future prospects</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future research</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future research directions</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future studies</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">future work</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">outlook</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<rdfs:label xml:lang="en">future directions section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000626 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000626">
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<obo:IAO_0000111 xml:lang="en">future directions textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Excerpt from Wang and Li. Acta Pharmacol Sin. 2016 Jan; 37(1): 25–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722976/):
In the future, several questions will need to be resolved regarding the physiological assembly of KCNQ channels and their functional implications in complex neural circuits. First, we still lack sufficiently selective inhibitors and activators among the KCNQ family members.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity expressing ideas regarding future work relevant to work described in a document that could be done.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">future directions textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000627 -->
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<obo:IAO_0000111 xml:lang="en">genome announcement section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'genome announcement' in a typical scientific journal article, e.g. in Kim et al. J Bacteriol. 2011 Oct; 193(19): 5537. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A document part announcing the publication of a novel draft genome sequence.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">genome announcement</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">genome announcement section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000628 -->
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<obo:IAO_0000111 xml:lang="en">genome announcement textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Excerpt from Kim et al. J Bacteriol. 2011 Oct; 193(19): 5537. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466/):
Here we report the genome sequence of Lactobacillus malefermentans KCTC 3548, which we obtained using a whole-genome shotgun strategy (4) with Roche 454 GS (FLX Titanium) pyrosequencing (257,559 reads totaling ∼89.8 Mb; ∼45-fold coverage of the genome) at the Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity that describes the generation and public release of a novel, draft genome sequence.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">genome announcement textual entity</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000629 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000629">
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<obo:IAO_0000111 xml:lang="en">keyword textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From: Fu and Lin. Identification of gene-oriented exon orthology between human and mouse. BMC Genomics. 2012; 13(Suppl 1): S10. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303729/):
Exon orthology; alternative splicing; exon duplication; intron-exon structure.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity listing keywords indicating the major theme(s) of a document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">keyword textual entity</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000630 -->
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<obo:IAO_0000111 xml:lang="en">keywords section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'keywords' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document where keywords selected by the author to categorize the major theme(s) of a document are listed.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">keywords</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">keywords section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000631 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000631">
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<obo:IAO_0000111 xml:lang="en">study limitations section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'limitations' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about biases or short comings related to the study design and execution.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">limitations</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">study limitations</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">Author guidelines published by The Society for Academic Emergency Medicine. (http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1553-2712/homepage/ForAuthors.html)</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">study limitations section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000632 -->
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<obo:IAO_0000111 xml:lang="en">study limitations textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Excerpt from the Limitations section of Fermann et al 2015, Acad Emerg Med. 2015 Mar; 22(3): 299–307 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405051/).
Owing to the nature of a post hoc study, any significant values must be interpreted with caution. In the current analysis, no multiple testing was conducted and p-values remain unadjusted. Moreover, a selection bias arising from the randomized open-label design of the original EINSTEIN PE study cannot be ruled out.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity addressing a shortcoming or bias of a study design or execution.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Author guidelines published by The Society for Academic Emergency Medicine. (http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1553-2712/homepage/ForAuthors.html)</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">study limitations textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000633 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000633">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000111 xml:lang="en">materials section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'materials' in a typical scientific journal article, e.g. Nguyen et al. BMC Bioinformatics. 2010; 11: 279. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889936/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about the materials required to reproduce the content of the document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">materials</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">materials section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000634 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000634">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000111 xml:lang="en">notes section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'notes' in a typical scientific journal article, e.g. McLean et al. Br J Gen Pract. 2014 Jul; 64(624): e440–e447 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073730/):</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document containing typically short notes about the document itself and/or the authors. Often the notes section contains subsections related to funding, competing interests, ethical approval, etc.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">notes</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">notes section</rdfs:label>
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<!-- http://purl.obolibrary.org/obo/IAO_0000635 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000635">
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">patients section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'patients' in a typical scientific journal article, e.g. in Citak et al. Acta Orthop. 2013 Jun; 84(3): 326–327. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715825/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about the patients that participated in a study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">patients section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000636 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000636">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">patients textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Excerpt from Citak et al. Acta Orthop. 2013 Jun; 84(3): 326–327. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715825/):
Between January 1996 and February 2012, we treated 4 patients with interprosthetic femoral fractures (3 of them women) (Figure 2) using a custom-made interposition device (Waldemar Link GmbH, Hamburg, Germany) (Figure 1). Mean age was 74 (59–86) years. The fractures occurred mean 18 (13–28) years after primary THA and mean 14 (10–17) years after primary TKA. At the latest follow-up, after mean 8 (0.5–16) years, revision surgery with a total femur replacement was required in 1 case due to aseptic loosening. No other complications requiring revision surgery occurred.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity expressing information regarding the patients used in a study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">patients textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000637 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000637">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000638"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">pre-publication history section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'pre-publication history' in a typical scientific journal article, e.g. in Xiao et al. BMC Anesthesiol. 2013; 13: 33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016475/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of the document about the publication history of a document. This section typically details dates of document submission to a journal and dates of any re-submissions as well as reviewer comments and responses to reviewers by the authors.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">notice of republication</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">pre-publication history</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">pre-publication history section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000638 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000638">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">pre-publication history textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Xiao et al. BMC Anesthesiol. 2013; 13: 33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016475/):
The pre-publication history for this paper can be accessed here:
http://www.biomedcentral.com/1471-2253/13/33/prepub</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity that expresses the pre-publication history (submission dates, reviewer comments, etc) for a document, often including a hyperlink to a web page detailing the information.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">pre-publication history textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000639 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000639">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000640"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">related work section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'related work' in a typical scientific journal article, e.g. Žitnik and Zupan. Bioinformatics. 2015 Jun 15; 31(12): i230–i239. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542780/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about work in other publications that is relevant to the content of the document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">related literature</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">related work</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">related work section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000640 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000640">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">related work textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Excerpt from Žitnik and Zupan. Bioinformatics. 2015 Jun 15; 31(12): i230–i239. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542780/):
Our work presented here is similar in spirit to our recently developed methodology for data fusion via collective matrix factorization (Žitnik and Zupan, 2015).
</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity that discusses work from other publications and expresses their relevancy to the content of a document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">related work textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000641 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000641">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">requirements section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'availability and requirements' in a typical scientific journal article, e.g. Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document about a resource described in the document, e.g. software, that describes the requirements necessary to use the resource, e.g. operating systems, hardware, etc. in the case of a software resource.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">requirements</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">requirements section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000642 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000642">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">requirements textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/):
• Operating systems: Platform independent
• Programming language: Matlab, R, Python
• Other requirements: None
• License: GNU GPL v3
• Any restrictions to use by non-academics: None</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity that expresses the requirements necessary to use a resource, e.g. software.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">requirements textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000643 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000643">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">statistical analysis textual entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">From Mondo et al. Cardiovasc J Afr. 2013 Mar; 24(2): 28–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734881/):
Data were captured into EPI-DATA (version 3.1), cleaned and then exported to Stata version 10 for analysis. Continuous variables were summarised as mean (± standard deviation) and median (inter-quartile range), and presented in the tables. Categorical data were analysed using frequency and percentages, and results are presented in frequency tables and bar charts. Test of significance (p-value) was determined using the chi-square test. A p-value of less than 0.05 was considered significant.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A textual entity documenting statistical analysis tools and techniques employed.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">statistical analysis textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000644 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000644">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000643"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">statistical analysis section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'statistical analysis' in a typical scientific journal article, e.g. Mondo et al. Cardiovasc J Afr. 2013 Mar; 24(2): 28–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734881/)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of the document used to describe the statistical methodologies employed in the work presented in the document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">statistical analysis</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">statistical analysis section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000645 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000645">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000306"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">tables section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The section labelled 'tables' in a typical scientific journal article.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A part of a document that contains one or more tables.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bill Baumgartner</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">tables</obo:IAO_0000118>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/183"/>
<rdfs:label xml:lang="en">tables section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000646 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000646">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0020000"/>
<obo:IAO_0000115 xml:lang="en">An identifier that denotes some postal delivery route, some aggregate of postal delivery routes or a geographical region and was created for the purpose of sorting and delivering mail.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">postal code</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000647 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000647">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<obo:IAO_0000115 xml:lang="en">A plan specification that if realized, is realized by the delivery of mail to some facility or mailbox within some geographical region.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">Postal delivery route</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000648 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000648">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000646"/>
<obo:IAO_0000115 xml:lang="en">A postal code that is used in the United States for the purpose of sorting and delivering mail, and that denotes some postal delivery route or some aggregate of postal delivery routes.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">ZIP code</obo:IAO_0000118>
<rdfs:label xml:lang="en">zone improvement plan code</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000650 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000650">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">database extract, transform, and load process</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A planned process which takes as input a database and fills another database by extracting concretizations of information entities from the first, transforming them, and loading the transformed concretizations into the second.</obo:IAO_0000115>
<obo:IAO_0000116>Alan Ruttenberg 12/21/16: Maybe this definition instead: A planned process which takes as input a database and copies concretizations from the first, optionally transforms then copies the result to the second</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Alan Ruttenberg 12/21/16: We don't define database in IAO, currently, as the bare word is ambiguous. Reasonable interpretations of the word might be the material entity, an information structure, an information content entity. However this definition commits, at least, to there being some material thing which bear concretizations of information entities and that there are new concretizations created during the process. We consider the ETL process in terms of information entities rather than the concretizations. No committment is made as to whether the specified output.</obo:IAO_0000116>
<obo:IAO_0000117>PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">ETL</obo:IAO_0000118>
<obo:IAO_0000119>WEB:https://en.wikipedia.org/wiki/Extract,_transform,_load</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/187"/>
<rdfs:isDefinedBy rdf:resource="https://github.com/information-artifact-ontology/IAO"/>
<rdfs:label xml:lang="en">database extract, transform, and load process</rdfs:label>
<foaf:page rdf:resource="https://en.wikipedia.org/wiki/Extract,_transform,_load"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000701 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000701">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000111 xml:lang="en">descriptive data section</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A document part that lists and defines data variables, describes data characteristics (e.g. missing data information) and any assumptions and simplifications made.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chen Yang</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>https://www.equator-network.org/reporting-guidelines/prisma/</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/235"/>
<obo:IAO_0000234>ONE ontology</obo:IAO_0000234>
<rdfs:label xml:lang="en">descriptive data section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000702 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000702">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000318"/>
<obo:IAO_0000111 xml:lang="en">additional results section</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A results section that reports analyses other than main results of the study (e.g. subgroups analyses, adjusted analyses, sensitivity analyses, etc.)</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chen Yang</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>https://www.equator-network.org/reporting-guidelines/consort/</obo:IAO_0000119>
<obo:IAO_0000119>https://www.equator-network.org/reporting-guidelines/prisma/</obo:IAO_0000119>
<obo:IAO_0000119>https://www.equator-network.org/reporting-guidelines/strobe/</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/235"/>
<obo:IAO_0000234>ONE ontology</obo:IAO_0000234>
<rdfs:label xml:lang="en">additional results section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000703 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000703">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000111 xml:lang="en">research participants section</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A document part that describes human subject(s) that participated in a study (e.g. inclusion & exclusion criteria, recruitment methods, reasons for non-participation, grouping and randomisation, methods of follow-up, etc.).</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chen Yang</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>https://www.equator-network.org/reporting-guidelines/consort/</obo:IAO_0000119>
<obo:IAO_0000119>https://www.equator-network.org/reporting-guidelines/prisma/</obo:IAO_0000119>
<obo:IAO_0000119>https://www.equator-network.org/reporting-guidelines/strobe-nut/</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/235"/>
<obo:IAO_0000234>ONE ontology</obo:IAO_0000234>
<rdfs:label xml:lang="en">research participants section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000704 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000704">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000317"/>
<obo:IAO_0000111 xml:lang="en">measurement methods section</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A methods section that describes details of data assessment methods (data measurement).</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chen Yang</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>https://www.equator-network.org/reporting-guidelines/strobe/</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/235"/>
<obo:IAO_0000234>ONE ontology</obo:IAO_0000234>
<rdfs:label xml:lang="en">measurement methods section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000705 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000705">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000111 xml:lang="en">research settings section</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A document part that describes the physical/social/cultural conditions around a research trial.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chen Yang</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>https://www.ncbi.nlm.nih.gov/books/NBK262175/</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/235"/>
<obo:IAO_0000234>ONE ontology</obo:IAO_0000234>
<rdfs:label xml:lang="en">research settings section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000706 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000706">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000631"/>
<obo:IAO_0000111 xml:lang="en">study bias section</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A study limitations section that describes systematic error introduced into sampling or testing by selecting or encouraging one outcome or answer over others.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chen Yang</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>DOI: 10.1097/PRS.0b013e3181de24bc</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/235"/>
<obo:IAO_0000234>ONE ontology</obo:IAO_0000234>
<rdfs:label xml:lang="en">study bias section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000707 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000707">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000315"/>
<obo:IAO_0000111 xml:lang="en">graphical abstract</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An abstract that is pictorial summary of the main findings described in the document.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Tim Beck</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">visual abstract</obo:IAO_0000118>
<obo:IAO_0000119>https://www.elsevier.com/authors/journal-authors/graphical-abstract</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/234"/>
<obo:IAO_0000234>Biomedical literature NLP project</obo:IAO_0000234>
<rdfs:label xml:lang="en">graphical abstract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0020000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0020000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">identifier</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An identifier is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao/pno.owl"/>
<rdfs:label xml:lang="en">identifier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0020021 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0020021">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000310"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0020022"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000058"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0020024"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000058"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0020024"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000115 xml:lang="en">A document that denotes some identity and is concretized by the bearer of some credential role.</obo:IAO_0000115>
<obo:IAO_0000117>Amanda Hicks</obo:IAO_0000117>
<rdfs:label xml:lang="en">identity document</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0020022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0020022">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty>
<rdf:Description>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
</rdf:Description>
</owl:onProperty>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0020021"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A documented identity is the aggregate of all data items about an entity. Notice that a documented identity is not itself a document since a document is intended to be understood as a whole and data items about an individual are usually scattered across different documents.</obo:IAO_0000115>
<obo:IAO_0000117>Amanda Hicks</obo:IAO_0000117>
<rdfs:comment xml:lang="en">is an aggregate of ICEs also an ICE? yes
Is part_of the appropriate relation to use for data items and documented identities?</rdfs:comment>
<rdfs:label xml:lang="en">documented identity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0020023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0020023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0020024"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty>
<rdf:Description>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
</rdf:Description>
</owl:onProperty>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000112> I order a beer and the bartender authenticates my age by looking at my DOB on my driver's license. I sign into my email account, and the system authenticates my permission to read the email by checking the password I enter against my password listed in the database.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Authentication is the act of checking or verifying an identity claim (that is either tacit or explicit).
</obo:IAO_0000115>
<obo:IAO_0000117>Amanda Hicks</obo:IAO_0000117>
<rdfs:label xml:lang="en">authentication</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0020024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0020024">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000023"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0020023"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0020021"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in a concretization of an identity document and is realized by an authentication process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Amanda Hicks</obo:IAO_0000117>
<rdfs:label xml:lang="en">credential role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021000">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label xml:lang="en">obsolete_claim</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021001">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0021009"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0021007"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021009"/>
<obo:IAO_0000112 xml:lang="en">my filling in an immigration form, a judge's signing and stamping a court order</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A deontic declaration creating or revoking a deontic role by lawfully manipulating (signing, stamping, publishing) a document.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">deontic document act</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021002">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000112 xml:lang="en">my filling in an immigration form, a judge's signing and stamping a court order</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A social act creating, revoking or transferring a socio-legal generically dependent continuant or a role by validating (signing, stamping, publishing) a document.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<obo:IAO_0100001 rdf:resource="http://purl.obolibary.org/obo/IAO_0021001"/>
<rdfs:label xml:lang="en">obsolete_document act</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000112 xml:lang="en">Colonel Klink giving Sergeant Schultz an order, Jake promising Jill to take her to the junior prom</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A planned process that is carried out by a conscious being or an organization, and is self-generated, directed towards another conscious being or an aggregate of conscious beings, an organization or an aggregate of organizations, and that needs to be perceived.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">social act</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021004">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000112 xml:lang="en">the claim of a piece of land, the obligation to pay rent to the owner of a rental property</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Socio-legal generically dependent continuants are generically dependent continuants that come into existence through social acts and that if they get concretized are concretized as realizable entities.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">obsolete_socio-legal generically dependent continuant</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021005">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000111 xml:lang="en">deontic declaration</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my consenting verbally to buy a used TV set for $ 500, John Robie's taking of Mrs. Steven's jewels, Jane Doe's revoking of informed consent over the phone, John Doe signing an employment contract.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A social act that brings about, transfers or revokes a socio-legal generically dependent continuant or brings about or transforms a role. Declarations do not depend on words spoken or written, but sometimes are merely actions, for instance the signing of a document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">declaration</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">status function declaration</obo:IAO_0000118>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete_deontic declaration</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that is either the specified output of an obligation generating social act or the concretization of a transferable obligation and that is realized by it's bearer being the providing part of a process that fulfills the previously agreed upon requirements.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">obligee role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000115 xml:lang="en">A document that is intended to be the specified input in a document act. It has a plan specification as a part that specifies the intended socio-legal entities that are created through the document (objective specification) and the way in which the document act is to be performed (by signing, by stamping, etc.) (action specification).</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">document act input document</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in an agent and which is externally grounded in the normative expectations that other agents within a social context have concerning how that agent should behave.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">deontic role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021009">
<owl:equivalentClass>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0021011"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0021008"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0021008"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115>A social act that creates or revokes a deontic role.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">deontic declaration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021010">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label xml:lang="en">obsolete_obligation</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021014">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">The role borne by a human being, an organization or an aggregate of either of both that is realized by being the active participant in a declaration.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label xml:lang="en">obsolete_declaration executive role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021015">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000112 xml:lang="en">the role borne by the US Citizen and Immigration Service realized by providing the template form for entering the US as a non-resident alien, the role of a guideline committee in putting together a clinical guideline</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">The role of a human being or an aggregate of human beings preparing the initial document to undergo a document act, thus creating a socio-legal generically dependent continuant.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:comment xml:lang="en">not that the "template" does not need to be a template at all. It can be a document that is getting stamped and signed and by these acts creating some socio-legal generically dependent continuants.</rdfs:comment>
<rdfs:label xml:lang="en">obsolete_document template creator role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021017">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">The role of a human being or an aggregate of human beings concretizing a claim.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label xml:lang="en">obsolete_claimant role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021018">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">The role of a human being or an aggregate of human beings concretizing an obligation.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label xml:lang="en">obsolete_obligator role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021020">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000112 xml:lang="en">me as a bearer of a spouse role, which participates in a document act, John Doe as bearer of a debtor role, which participates in a document act</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">The human being or organization or aggregate of any of the aforementioned that is the bearer of a concretization of a socio-legal generically dependent continuant brought about by or transferred in a specific document act.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete_declaration target</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021021 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021021">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000023"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000033"/>
</owl:unionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000310"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibary.org/obo/IAO_0021001"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112 xml:lang="en">The role of the U.S. Citizenship and Immigration Service realized by the creation of an immigration form that is being filled in, the role of a national professional association realized by the creation of a clinical guideline that is to be certified</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A role that inheres in a human being or organization or aggregate of any of the aforementioned that prepares a document that is the specified input to a document act and is the input document of a document act.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">document act template creator role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021022">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a human being or an organization or an aggregate of any of the aforementioned that is realized by the bearer being the agent in a declaration.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">declaration performer role</obo:IAO_0000118>
<rdfs:label xml:lang="en">deontic declaration performer role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021030">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115>The human being or organization or aggregate of any of the aforementioned that is the bearer of a concretization of a socio-legal generically dependent continuant brought about by or transferred in a specific document act.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">obsoleted_document act target</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021031">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000023"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000033"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibary.org/obo/IAO_0021001"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000112 xml:lang="en">a judge's role of signing a court order</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A role inhering in a human being or an organization or an aggregate of any of the aforementioned that is realized by the bearer being the agent in a document act.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">document act performer role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021102 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021102">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115 xml:lang="en">A social act that postulates a socio-legal fact for a specified group of people or organizations.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">enactment</obo:IAO_0000118>
<rdfs:label xml:lang="en">standing declaration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0021300 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0021300">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that is either the specified output of an obligation generating social act or the concretization of a transferable obligation and that is realized by it's bearer being the receiving part of a process that fulfills the previously agreed upon requirements.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">John Judkins</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">obligor role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
<obo:IAO_0000111 xml:lang="en">ontology module</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">I have placed this under 'data about an ontology part', but this can be discussed. I think this is OK if 'part' is interpreted reflexively, as an ontology module is the whole ontology rather than part of it.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">ontology file</obo:IAO_0000118>
<obo:IAO_0000232 xml:lang="en">This class and it's subclasses are applied to OWL ontologies. Using an rdf:type triple will result in problems with OWL-DL. I propose that dcterms:type is instead used to connect an ontology URI with a class from this hierarchy. The class hierarchy is not disjoint, so multiple assertions can be made about a single ontology.</obo:IAO_0000232>
<rdfs:label xml:lang="en">ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">base ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies.</obo:IAO_0000115>
<rdfs:label xml:lang="en">base ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/INCATools/ontology-starter-kit/issues/50"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">editors ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">source ontology module</obo:IAO_0000118>
<rdfs:label xml:lang="en">editors ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">main release ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is intended to be the primary release product and the one consumed by the majority of tools.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">TODO: Add logical axioms that state that a main release ontology module is derived from (directly or indirectly) an editors module</obo:IAO_0000116>
<rdfs:label xml:lang="en">main release ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">bridge ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.</obo:IAO_0000115>
<rdfs:label xml:lang="en">bridge ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">import ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology module that is intended to be imported from another ontology.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">TODO: add axioms that indicate this is the output of a module extraction process.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">import file</obo:IAO_0000118>
<rdfs:label xml:lang="en">import ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://robot.obolibrary.org/extract"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">ontology slim</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">subset ontology</obo:IAO_0000118>
<rdfs:label xml:lang="en">subset ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://robot.obolibrary.org/filter"/>
<rdfs:seeAlso rdf:resource="http://www.geneontology.org/page/go-slim-and-subset-guide"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">curation subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.</obo:IAO_0000115>
<rdfs:label xml:lang="en">curation subset ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">analysis ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is intended for usage in analysis or discovery applications.</obo:IAO_0000115>
<rdfs:label xml:lang="en">analysis subset ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">single layer ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">ribbon subset</obo:IAO_0000118>
<rdfs:label xml:lang="en">single layer subset ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">exclusion subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">antislim</obo:IAO_0000118>
<rdfs:label xml:lang="en">exclusion subset ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000005"/>
<obo:IAO_0000111 xml:lang="en">external import ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">external import</obo:IAO_0000118>
<rdfs:label xml:lang="en">external import ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">species subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology that is crafted to either include or exclude a taxonomic grouping of species.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">taxon subset</obo:IAO_0000118>
<rdfs:label xml:lang="en">species subset ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">reasoned ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available.</obo:IAO_0000115>
<rdfs:label xml:lang="en">reasoned ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://robot.obolibrary.org/reason"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000014">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">generated ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">TODO: Add axioms (using PROV-O?) that indicate this is the output-of some reasoning process</obo:IAO_0000116>
<rdfs:label xml:lang="en">generated ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000015">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000014"/>
<obo:IAO_0000111 xml:lang="en">template generated ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is automatically generated from a template specification and fillers for slots in that template.</obo:IAO_0000115>
<rdfs:label xml:lang="en">template generated ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://robot.obolibrary.org/template"/>
<rdfs:seeAlso rdf:resource="https://doi.org/10.1186/s13326-017-0126-0"/>
<rdfs:seeAlso rdf:resource="https://github.com/dosumis/dead_simple_owl_design_patterns/"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000004"/>
<obo:IAO_0000111 xml:lang="en">taxonomic bridge ontology module</obo:IAO_0000111>
<rdfs:label xml:lang="en">taxonomic bridge ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">ontology module subsetted by expressivity</obo:IAO_0000111>
<rdfs:label xml:lang="en">ontology module subsetted by expressivity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000017"/>
<obo:IAO_0000111 xml:lang="en">obo basic subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools.
Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses).
An ontology is OBO Basic if and only if it has the following characteristics:
DAG
Unidirectional
No Dangling Clauses
Fully Asserted
Fully Labeled
No equivalence axioms
Singly labeled edges
No qualifier lists
No disjointness axioms
No owl-axioms header
No imports</obo:IAO_0000115>
<rdfs:label xml:lang="en">obo basic subset ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://owlcollab.github.io/oboformat/doc/obo-syntax.html#6.2"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000017"/>
<obo:IAO_0000111 xml:lang="en">ontology module subsetted by OWL profile</obo:IAO_0000111>
<rdfs:label xml:lang="en">ontology module subsetted by OWL profile</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000019"/>
<obo:IAO_0000111 xml:lang="en">EL++ ontology module</obo:IAO_0000111>
<rdfs:label xml:lang="en">EL++ ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000001">
<owl:equivalentClass>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ICO_0000213"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ICO_0000214"/>
</owl:unionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021007"/>
<obo:IAO_0000115 xml:lang="en">A document that explains all relevant information to assist a human being in understanding the expectations and requirements of participation in a process, and is an instrument in obtaining consent and, after having obtained consent, is a record that such a consent has occurred.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The term definition is adapted from NCIt definition of 'consent form' (C16468) with modification. For instance, whereas the NCIt definition restricted informed consent forms to clinical trials, the present definition does not.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en"></obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, Asiyah Yu Lin, Marcy Harris, Elizabeth Eisenhauer, Jonathan Vajda, Cooper Stansbury, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">informed consent document</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">NCIt C16468</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">See curator note for 'incomplete informed consent form'.</obo:IAO_0000232>
<obo:ICO_0000091 xml:lang="en">C0009797</obo:ICO_0000091>
<obo:ICO_0000092 xml:lang="en">C16468</obo:ICO_0000092>
<rdfs:label xml:lang="en">informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves the design of an informed consent form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">designing an informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that validates an informed consent form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">validating an informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that approves an informed consent form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">approving an informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115 xml:lang="en">A social act that is a part of an informed consent process and has output of a signed informed consent form. The signing process leads to a legal obligation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, Jihad Obeid, Chris Stoeckert, and Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:comment xml:lang="en">Signing here does not mean that we have to sign with a pen. It may happen in terms of signing a piece of a paper or an electronic form.</rdfs:comment>
<rdfs:label xml:lang="en">signing an informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">An organization charged with approving clinical study protocols and ensuring that applicable governing rules and laws are upheld.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent regulatory body</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000115 xml:lang="en">A document that is a part of an informed consent form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">informed consent form element</obo:IAO_0000118>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">part of informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000008">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes potential harm or estimates the likelihood of harm.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">description of participation risk</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A document part that prescribes a method of contact in the future.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">recontact method directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000242"/>
<obo:IAO_0000115 xml:lang="en">An answer directive that is part of a document and whose filling in or leaving blank is incidental to the completion of the form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, J. Neil Otte</obo:IAO_0000117>
<rdfs:label>option to check</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000115 xml:lang="en">A document part of an informed consent form for which an answer is required in order to complete the form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">required informed consent element</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000115 xml:lang="en">A document part of an informed consent form for which an answer is not required in order to complete the form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">optional informed consent element</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that documents a voluntary decision to deposit a human biospecimen.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.irb.umich.edu/policies/consent/</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.who.int/rpc/research_ethics/informed_consent/en/</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form for human biospecimen collection</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000014">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that is specifically for human blood sample collection.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">informed consent form for human blood sample collection</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000015">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ICO_0000001"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000222"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that has been signed by at least one participant.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Note from J. Neil Otte (7.24.18): 'signed informed consent form' is not a synonym nor subclass of 'complete informed consent form indicating consent'. A signed informed consent form may bear the signature of a witness or doctor, but not yet be complete. Also, a complete informed consent form may need only have been stamped or witnessed by checking a box in an electronic form, and may not require a signature.</obo:IAO_0000232>
<rdfs:label xml:lang="en">signed informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that specifies the scope of allowed research and is derived from a research protocol.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">allowed research scope in informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000017">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that has been signed by all participants.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete fully signed informed consent form</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that has been signed by a human subject</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form signed by human subject</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000314"/>
<obo:IAO_0000115 xml:lang="en">A document part that is specified as a place to receive a signature.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">signature section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000019"/>
<obo:IAO_0000115 xml:lang="en">A signature section in informed consent element that that is specified as a place to receive a signature from a human subject.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">human subject signature section in informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000021 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000021">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000019"/>
<obo:IAO_0000115 xml:lang="en">A signature section in an informed consent form that is specified as a place to receive a signature from an investigator.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">investigator signature section in informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000022">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A information content entity that designates a temporal region.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/ICO-ontology/ICO/issues/36</obo:IAO_0000233>
<rdfs:label xml:lang="en">temporal region identifier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that has been filled with all required contents.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">completely filled informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that has been partially filled with required contents.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">partially filled informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000025 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000025">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000022"/>
<obo:IAO_0000115 xml:lang="en">A date specification in an informed consent form that specifies an effective date of an investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">effective date specification in informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000026">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A date specification in an informed consent form that specifies the expiration date of an investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete expiration date specification in informed consent form</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000022"/>
<obo:IAO_0000115 xml:lang="en">A date specification in an informed consent form that specifies the starting date of an investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">starting date specification in informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000028 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000028">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A document part that describes and specifies human blood sample collection procedures.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete human blood sample collection section</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that is used for a clinical study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.who.int/rpc/research_ethics/informed_consent/en/</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form for clinical study</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000030">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that is used for a storage and future use of unused samples.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.who.int/rpc/research_ethics/informed_consent/en/</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form for storage and future use of unused samples</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000031">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that is used for a qualitative study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.who.int/rpc/research_ethics/informed_consent/en/</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form for qualitative study</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000032">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000085"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that is adapted to the cognitive abilities and reading abilities child or minor.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Jonathan Vajda</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.who.int/rpc/research_ethics/informed_consent/en/</obo:IAO_0000119>
<rdfs:label xml:lang="en">informed assent form for child or minor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000033 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000033">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form for qualitative study that involves children.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.who.int/rpc/research_ethics/informed_consent/en/</obo:IAO_0000119>
<rdfs:label xml:lang="en">informed consent form for qualitative research involving children</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000034 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000034">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form for clinical study that involves children.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.who.int/rpc/research_ethics/informed_consent/en/</obo:IAO_0000119>
<rdfs:label xml:lang="en">informed consent form for clinical research involving children</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000035 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000035">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000115 xml:lang="en">A data item that indicates a date that specified on an informed consent form.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">5/7/2014 Asiyah Yu Lin: It is the date specification that appears on the informed consent form, which is may different with the actual date.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Asiyah Yu Lin, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">date specification in informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000036 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000036">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000022"/>
<obo:IAO_0000115 xml:lang="en">A date specification that designates when an informed consent form was signed.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">5/7/2014 Asiyah Yu Lin: look at the OBI example of sample collection date http://purl.obolibrary.org/obo/OBI_0001619</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Yongqun He, J. Neil Otte</obo:IAO_0000117>
<rdfs:label>informed consent form signing date</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000037 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000037">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000022"/>
<obo:IAO_0000115 xml:lang="en">A temporal region identifier that designates a project duration.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, J. Neil Otte</obo:IAO_0000117>
<rdfs:label>project duration specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000038 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000038">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000022"/>
<obo:IAO_0000115 xml:lang="en">A date specification that designates the date when a project begins.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">project starting date specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000039 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000039">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000022"/>
<obo:IAO_0000115 xml:lang="en">A date specification that designates the date when a project ends.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">project end date specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000040 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000040">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<obo:IAO_0000115 xml:lang="en">A human subject who provides informed consent without a legal guardian.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">human subject consenter</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000041 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000041">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that specifies the deontic roles that are produced, revoked, or modified following a process of informed consent, where those deontic roles inhere in the human subject consenter signing an informed consent form, and the investigator or organization leading a research study or providing health care.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent rule specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000042 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000042">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000041"/>
<obo:IAO_0000112 xml:lang="en">An example is that the organization leading a study may be obliged to destroy a patient's biospecimens after 10 years as required in an informed consent form.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An informed consent rule specification that specifies a course of action legally required to be taken.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">obligation informed consent rule specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000043 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000043">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000041"/>
<obo:IAO_0000115 xml:lang="en">An informed consent rule specification that specifies an optional course of action that is an option for a participant to take.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">An example is that a human subject consenter is given the option to withdraw from a consented study any time as specified in an informed consent form.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">permission informed consent rule specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000044 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000044">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000115 xml:lang="en">A data item consisting of a unique identification code designating an informed consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">informed consent identification code</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000045 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000045">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role borne by an agent that, if realized, is realized in an investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">investigator role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000046 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000046">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115 xml:lang="en">A planned process of making the decision of the competent authorities in form of a letter, document, or verbal or electronic form, that confirms that somebody has permission to do something or be somewhere, e.g. to realize a given project.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The alternative term of 'permission' has semantic similarity with authorization in the sense of 'approval to do something' and 'the act of giving a formal (usualy written) authorization. The semnatic similarity measuremment of permission and authorization is done using WordNet::Similarity (http://marimba.d.umn.edu/cgi-bin/similarity/)</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He, Elizabeth Umberfield</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">permission</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">NCIt C41192</obo:IAO_0000119>
<rdfs:label xml:lang="en">act of authorizing</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000181"/>
<obo:IAO_0000115 xml:lang="en">A population of human beings.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">human population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000048 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000048">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">An organization that is operated without the principal goal of making a financial profit.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">nonprofit organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000049 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000049">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">An organization which has the principle goal of earning financial profit.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">profit organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000050 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000050">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An investigation that involves animal research.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete animal research investigation</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000051 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000051">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:IAO_0000115 xml:lang="en">An investigation that targets cancer research.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">cancer research investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000052 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000052">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A cancer research investigation that specifically targets metastatic melanoma research.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete metastatic melanoma research investigation</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000053 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000053">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:IAO_0000115 xml:lang="en">An investigation that targets drug testing.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">drug testing investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000054 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000054">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:IAO_0000115 xml:lang="en">An investigation that involves human research.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">human research investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000055 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000055">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An investigation that has process part some genetic analysis.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete genetic study</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000056 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000056">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ICO_0000224"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000048"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">An investigation that is conducted with a nonprofit purpose.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">nonprofit research investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000057 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000057">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ICO_0000224"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000049"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">An investigation that is conducted with the purpose of earning a profit.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">for-profit research investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000058 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000058">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000038"/>
<obo:IAO_0000115 xml:lang="en">A one-dimensional temporal region to which an investigation stands in the occupies_temporal_region relation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">investigation period</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000059 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000059">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity prescribes an ethical requirement.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">ethics directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000060 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000060">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000227"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A planned process that involves placing a specimen in some location in order to maintain possession of it.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of storing a specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000061 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000061">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that is designed for use in genetic studies.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Marcy Harris, Alla Karnovsky, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form for genetic study</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000062 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000062">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<obo:IAO_0000115 xml:lang="en">A human subject who is unable to give informed consent. In this case, another person is generally authorized to give consent on his behalf, e.g., parents or legal guardians of a child, though in this circumstance the child may be required to provide informed assent, and conservators for the mentally ill.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">web: http://en.wikipedia.org/wiki/informed_consent</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">human subject unable to give informed consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000063 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000063">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000117 xml:lang="en">Marcy Harris</obo:IAO_0000117>
<rdfs:label>obsolete informed consent form for quantitative study</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000064 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000064">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:IAO_0000115 xml:lang="en">An investigation that requires an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">study requiring informed consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000065 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000065">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
<obo:IAO_0000115 xml:lang="en">A study that is a clinical trial that requires an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232>Based on NCI/PT, a clinical trial is a type of research study that tests how well new medical approaches work in people. These studies test new methods of screening, prevention, diagnosis, or treatment of a disease.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">Needs work. Best fit is to rely on SIO_0001000, which has a fine-grained hierarchy. Parent is 'intervention study' (SIO_0000994) which is an investigation (SIO_0000747). However, we have investigation already defined in OBI_0000066.</obo:IAO_0000232>
<rdfs:label xml:lang="en">clinical trial</rdfs:label>
<rdfs:seeAlso xml:lang="en">UMLS: C0008976</rdfs:seeAlso>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000066 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000066">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001622"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000065"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">An investigation title that designates a clinical trial study, briefly identifying the purpose or design of the investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/ICO-ontology/ICO/issues/36</obo:IAO_0000233>
<rdfs:label xml:lang="en">clinical trial title</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000068 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000068">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<rdfs:label>obsolete general requirement for informed consent</rdfs:label>
<rdfs:seeAlso xml:lang="en">§46.116 General requirements for informed consent</rdfs:seeAlso>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000069 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000069">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<obo:IAO_0000115 xml:lang="en">A person who is the contact for questions about research.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Marcy Harris, Alla Karnovsky, Frank Manion, Asiyah Yu Lin, Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">contact person for questions about research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000070 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000070">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<obo:IAO_0000115 xml:lang="en">A person who is the contact for questions about research subject right.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Marcy Harris, Alla Karnovsky, Frank Manion, Asiyah Yu Lin, Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">contact person for questions about research subject rights</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000071 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000071">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A person who is the contact for questions in the event of a research-related injury to the subject</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Marcy Harris, Alla Karnovsky, Frank Manion, Asiyah Yu Lin, Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete contact person in the event of a research-related injury to the subject</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000072 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000072">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<obo:IAO_0000115 xml:lang="en">A person who can be contacted during an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Marcy Harris, Alla Karnovsky, Frank Manion, Asiyah Yu Lin, Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">contact person in informed consent process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000073 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000073">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in human being and is an output of some participation in a research study.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The term definition is adapted from the definition of the NCIt term 'Human Study Subject' with modification.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Elizabeth Eisenhauer, Asiyah Yu Lin, Asiyah Yu Lin, Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">human patient</obo:IAO_0000118>
<obo:ICO_0000091 xml:lang="en">C2349001</obo:ICO_0000091>
<obo:ICO_0000092 xml:lang="en">C70665</obo:ICO_0000092>
<rdfs:label xml:lang="en">research subject role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000074 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000074">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000046"/>
<obo:IAO_0000115 xml:lang="en">An act of authorizing that is signed by a patient, or his legal representative, or clinical study participant for the use or disclosure of oral, written, or electronic form of confidential health information that identifies the individual and relates to the medical history, diagnosis, treatment, or prognosis of his condition.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">NCIt C70679</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">authorization for release of confidential health information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000075 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000075">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A document that is the output of an authorization process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">JV: This probably belongs in D-Acts</obo:IAO_0000232>
<rdfs:label>obsolete authorization document</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000076 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000076">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An authorization process aims to release the medical record.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<rdfs:label>obsolete authorization for medical records release</rdfs:label>
<rdfs:seeAlso xml:lang="en">UMLS CUI: C2921556</rdfs:seeAlso>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000077 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000077">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A benefit is a disposition or the potential positive effects that may arise from participating in a study.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This term definition is adopted from the NCIt definiton of "benefit" (C25387) with modification.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Marcy Harris, Yongqun He, Elizabeth Eisenhauer, Alla Karnovsky, Frank Manion, J. Neil Otte, Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000091 xml:lang="en">C0814225</obo:ICO_0000091>
<obo:ICO_0000092 xml:lang="en">C25387</obo:ICO_0000092>
<rdfs:comment xml:lang="en">Note that a payment is not a benefit of a study.</rdfs:comment>
<rdfs:label>obsolete benefit</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000078 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000078">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000115 xml:lang="en">A risk is a disposition or the potential future harm that may arise from some present action. It is often combined or confused with the probability of an event which is seen as undesirable.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This term definition is adapted from the NCIt definiton of "Risk" (C17102) . The following source is alos referenced: BMEO(Biomedical Ethics Ontology) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2725426/</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Marcy Harris, Yongqun He, Elizabeth Eisenhauer, Alla Karnovsky, Frank Manion</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">NCIt: C17102</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<obo:ICO_0000091 xml:lang="en">C0035647</obo:ICO_0000091>
<obo:ICO_0000092 xml:lang="en">C17102</obo:ICO_0000092>
<rdfs:label xml:lang="en">risk</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000079 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000079">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">A specially constituted organization comprised of medical, scientific and non-scientific members established and designated by an entity to ensure the protection of the rights, safety and well-being of human subjects recruited to participate in biomedical or behavioral research according to the requirements outlined in Title 38, part 16 (same as Title 45, part 46 and Title 21, part 56) of the U.S. Code of Federal Regulations. IRB responsibility include but not limited to the reviewing, approving, and providing continuing review of trial protocol and amendments and of the methods and material to be used in obtaining and documenting informed consent of the trial. Other equivalent committees with the same or similar functions are also considered to be IRBs.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">IRB</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">NCIT C16741</obo:IAO_0000119>
<obo:ICO_0000091 xml:lang="en">C0086911</obo:ICO_0000091>
<rdfs:label xml:lang="en">institutional review board</rdfs:label>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C16741&ns=NCI_Thesaurus</rdfs:seeAlso>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000080 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000080">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">a role inhering in a homo sapiens that, if realized, is realized in assisting with a research process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, J. Neil Otte</obo:IAO_0000117>
<rdfs:label>research assistant role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000081 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000081">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in an individual who is authorized under applicable State or local law to consent on behalf of a child or incapable person to general medical care including participation in clinical research.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Yongqun He: Based on the definition, may be better to label it as consent legal guardian role</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">legally authorized representative role</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">NCTI C51828</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">legal guardian role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000082 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000082">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000116 xml:lang="en">Yongqun He: Based on the definition of 'legal guardian role', it may be better to label the term as 'consent legal guardian' of 'legal guardian of consent'.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">legally authorized representative</obo:IAO_0000118>
<rdfs:label>obsolete legal guardian</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000083 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000083">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000103"/>
<obo:IAO_0000115 xml:lang="en">A protected health information entity which identifies an individual; or with respect to which there is a reasonable basis to believe the information can be used to identify an individual.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Individually identifiable health information includes many common identifiers such as name, address, birth date, Social Security Number.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">This is adapted from HIPAA.</obo:IAO_0000232>
<rdfs:label xml:lang="en">individually identifiable health information entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000084 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000084">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000810"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000197"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000810"/>
<obo:IAO_0000115 xml:lang="en">An informed consent process that has an act of communicating assent as a process part, where the person who provides the assent does not bear a competency to consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He, Frank Manion, Chris Stoeckert, Jihad Obeid, Jonathan Bona, Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Jonathan Vajda</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">http://www.hopkinsmedicine.org/institutional_review_board/guidelines_policies/guidelines/informed_consent_i.html</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.cancer.gov/about-cancer/treatment/clinical-trials/patient-safety/childrens-assent</obo:IAO_0000119>
<rdfs:label xml:lang="en">informed consent process with assent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000085 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000085">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000115 xml:lang="en">A document that explains relevant information regarding the expectations and requirements of participation in a research study or clinical procedure, is adapted to the cognitive capacities of that individual so as to assist in that individual's understanding, and is designed to record the assent of that individual.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Jonathan Vajda</obo:IAO_0000117>
<rdfs:label xml:lang="en">informed assent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000086 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000086">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in a patient or the legal guadian when he/she participates the consenting process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">consenter role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000087 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000087">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<obo:IAO_0000115 xml:lang="en">A time measurement datum that measures the duration of a study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">study duration measurement</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000088 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000088">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000038"/>
<obo:IAO_0000115 xml:lang="en">A temporal interval during which a human being participates in a process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">participation duration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000089 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000089">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<obo:IAO_0000115 xml:lang="en">Total length of time of subject's participation in a clinical study; from the time of enrollment to the completion of follow-up.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This duration is different with the 'planned duration of study subject participation'</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">actual duration of study subject participation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000090 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000090">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A document that certifies that 1) a person may perform some action, or 2) which provides authentication for a claim, or 3) which confirms position or status.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">5/8/2014 Asiyah Yu Lin: May not included in the final ontology.</obo:IAO_0000116>
<rdfs:label>obsolete credential letter</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000094 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000094">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">The process by which information about the health status of an individual is obtained after a study has officially closed; an activity that continues something that has already begun or that repeats something that has already been done.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">NCIT:C16033</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">Elizabeth: Pay attention to definition "after study procedures and treatments have concluded." Does it fit our purposes?</obo:IAO_0000232>
<obo:ICO_0000092 xml:lang="en">C16033</obo:ICO_0000092>
<rdfs:label>obsolete follow-up visit</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000095 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000095">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000078"/>
<obo:IAO_0000115 xml:lang="en">A risk that is equal or lesser than those ordinarily encountered in daily life or during the performance of routine physical or psychological examinations or tests.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">(45 CFR 46.102(i)). Available online from: http://www.hhs.gov/ohrp/humansubjects/guidance/45cfr46.html#46.102 Accessed 7/31/13.</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">Definition varies slightly for research on prisoners; see (45 CFR 46.303(d)).</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">minimal risk</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000096 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000096">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A medical record that records the history of a subject's treatment for alcohol abuse.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete alcohol abuse treatment record</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000097 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000097">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A medical record that describes a patient's mental health care history.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:ICO_0000091 xml:lang="en">C2114499</obo:ICO_0000091>
<rdfs:label>obsolete mental health care record</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000098 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000098">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves explanation to a human subject candidate with relevant study information, including study purpose, protocol, and human subject benefits and risks, that indicated in an informed consent form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">explaining to participant candidate about the study participating information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000099 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000099">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form designed for use in human urine collection.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form for human urine biospecimen collection</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000100 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000100">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000102"/>
<obo:IAO_0000115 xml:lang="en">A physical injury or illness that is a direct result of the treatment, or procedures required by the protocol, to which the subject would not have been exposed had they not participated in the study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">1) Citing Resnik, (2006), Mamotte N, Wassenaar D, Singh N (2013) define Research-related injury as “a physical, psychological, social, financial, or other injury, harm, or adverse event that a research participant experiences as a direct result of research participation or from use of the study product.”
2) Resnik, (2006)“A research-related injury is an injury that occurs to a subject as a result of research participation. Injuries may range from relatively minor harms (such as bruises or infected wounds) to major injuries (such as organ damage or temporary disability) to catastrophic injuries (such as permanent disability or death). An injury may require only acute or emergency care, or it may require continuing care. Injuries can be physical or psychological, or emotional.”p. 264</obo:IAO_0000119>
<rdfs:label xml:lang="en">research-related injury</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000101 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000101">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115 xml:lang="en">An information content entity which is created or received by a health care provider, health plan, public health authority, employer, life insurer, school or university, or health care clearinghouse; and relates to the past, present, or future physical or mental health or condition of any individual, the provision of health care to an individual, or the past, present, or future payment for the provision of health care to an individual.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This is adapted from HIPAA.</obo:IAO_0000232>
<rdfs:label xml:lang="en">health information entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000102 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000102">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">The process that shares the information under the informed consent context</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">The definition needs to be improved.</obo:IAO_0000232>
<rdfs:label>obsolete information sharing process</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000103 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000103">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000101"/>
<obo:IAO_0000115 xml:lang="en">A health information entity which is created, received, stored, or transmitted by covered entities and their business associates in relation to the provision of healthcare, healthcare operations and payment for healthcare services.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, J. Niel Otte, Jonathan Vadja</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This is adapted from HIPAA.</obo:IAO_0000232>
<rdfs:label xml:lang="en">protected health information entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000104 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000104">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that contains a questionnaire section.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form containing questionnaire</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000105 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000105">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000154"/>
<obo:IAO_0000115 xml:lang="en">As a partial process of inform the candidate about the study participating information, the purpose of the study will be explained to make sure that the candidate is informed adequately from his/her perspective.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">explaining study purpose to participant candidate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000106 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000106">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">Legal name is the person name that identifies a person for legal, administrative and other official purposes. A person&apos;s first legal name generally is the name of the person that was given for the purpose of registration of the birth and which then appears on a birth certificate (see birth name), but may change subsequently.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">http://en.wikipedia.org/wiki/Legal_name</obo:IAO_0000119>
<rdfs:label>obsolete legal name</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000107 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000107">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 xml:lang="en">A process that terminates a study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Note from J. Neil Otte (7.24.18): This class is not to be confused with the terminal process boundary of a study process.</obo:IAO_0000232>
<rdfs:label xml:lang="en">study termination</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000108 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000108">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which an agent decides to discontinue further participation in a study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">withdrawing participation in study</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000109 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000109">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that revokes a permission role inhering in some agent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of canceling a permission</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000110 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000110">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000090"/>
<obo:IAO_0000115 xml:lang="en">A treatment currently in wide use and approved by a regulatory body or health authority, considered to be effective in the treatment of a specific disease or condition.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">CDISC</obo:IAO_0000119>
<rdfs:label xml:lang="en">standard medical treatment</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000111 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000111">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
<obo:IAO_0000115 xml:lang="en">A character string that is assigned by a review board upon approval of a regulatory document.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">For the review board approval, different countries or continents may have different responsible entities for approving the study. For example, in USA, the board is called "Institutional Review Board" (IRB). In many countries in Europe, it is called Ethics committee.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">This term definition is adapted from the definition of the NCIt term 'Review Board Approval Number Text'.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Elizabeth Eisenhauer, Yongqun He, Alla Karnovsky, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000091 xml:lang="en">C2985863</obo:ICO_0000091>
<obo:ICO_0000092 xml:lang="en">C93662</obo:ICO_0000092>
<rdfs:label xml:lang="en">review board approval number</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000112 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000112">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<obo:IAO_0000115 xml:lang="en">An organizational function that involves the areas of information systems and computer science; and that may be realized in planning, organizing, describing, and controlling data resources.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">http://en.wikipedia.org/wiki/Data_administration</obo:IAO_0000119>
<rdfs:label xml:lang="en">data administration function</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000113 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000113">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that has been processed to prevent the identification of the person with whom the data are associated, thereby enduring in a stasis of anonymization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda, Asiyah Yu Lin</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Anonymized data is applicable particularly for secondary use of health data.</rdfs:comment>
<rdfs:label xml:lang="en">anonymized information content entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000114 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000114">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An anonymized data item that is about a genomic sample.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Anonymized data and samples are initially single or double coded but the link between the subjects identifiers and the unique code(s) are subsequently deleted. Once the link has been deleted it is no longer possible to trace the data and samples back to the individual through the coding key(s). Anonymisation is intended to prevent subject re-identification. As anonymised samples and associated data are not traceable back to the subject it is not possible to undertake actions such as sample withdrawal, or the return of individual results. The use of anonymised data and samples does not allow for clinical monitoring, subject follow-up or the addition of new data. The deletion of the coding key(s) linking the data and samples to the subjects identifiers provides additional confidentiality and privacy protection over coded data and samples, as it prevents subject re-identification through the use of the coding key(s) (ICH).</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He, J. Neil Otte</obo:IAO_0000117>
<rdfs:label>obsolete anonymized genomic data</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000115 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000115">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An anonymized information content entity about a genomic sample.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Anonymized data and samples are initially single or double coded but the link between the subjects identifiers and the unique code is subsequently deleted. Once the link has been deleted it is no longer possible to trace the data and samples back to the individual through the coding key. Anonymisation is intended to prevent subject re-identification. As anonymised samples and associated data are not traceable back to the subject it is not possible to undertake actions such as sample withdrawal, or the return of individual results. The use of anonymised data and samples does not allow for clinical monitoring, subject follow-up or the addition of new data. The deletion of the coding key linking the data and samples to the subjects identifiers provides additional confidentiality and privacy protection over coded data and samples, as it prevents subject re-identification through the use of the coding key (ICH).</obo:IAO_0000116>
<rdfs:label>obsolete anonymized genomic sample</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000116 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000116">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000421"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves using data which was an output of a human being's participation in a study and which is about that human being.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Elizabeth Umberfield</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of using study participant data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000117 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000117">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000154"/>
<obo:IAO_0000115 xml:lang="en">In order to make sure that the candidate is informed adequately from his or her perspective, the protocol of the study including the protocol of participating, for example, what kind of procedure the participant will be involved, how many scheduled visits will be explained.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">explaining study protocol to participant candidate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000118 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000118">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<obo:IAO_0000115 xml:lang="en">A site where documents are preserved.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This term is extracted from Nick's comment on the ICBO paper draft version0.11_Yongqun He.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<rdfs:label xml:lang="en">repository of documents</rdfs:label>
<rdfs:seeAlso xml:lang="en">UMLS: C0003738</rdfs:seeAlso>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000119 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000119">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000116 xml:lang="en">This term is extracted from Nick's comment on the ICBO paper draft version0.11_Yongqun He.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin</obo:IAO_0000117>
<rdfs:label>obsolete storage duration of signed informed consent form</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000120 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000120">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that collect a signed informed consent form. During this process, the information is systematically kept in a repository.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">We can put this axiom: inform... 's located in' some 'archive reposigtory of signed informed consent'</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Marcy Harris, Alla Karnovsky, Asiyah Yu Lin, Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">storage of signed informed consent form</obo:IAO_0000118>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">archiving signed informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000121 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000121">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000154"/>
<obo:IAO_0000115 xml:lang="en">The potential benefit to the study subject that may arise from participating the study research is to be explained to candidate</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">explaining benefits of participation to participant candidate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000122 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000122">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that specifies US federal policy for the protection of human subjects.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Eisenhauer, Marcy Harris, Alla Karnovsky, Yongqun He, Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">Common Rule</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.hhs.gov/ohrp/humansubjects/commonrule/</obo:IAO_0000119>
<rdfs:label>obsolete US federal policy for the protection of human subjects</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000123 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000123">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000227"/>
<obo:IAO_0000115 xml:lang="en">An act of storing a complete informed consent form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Elizabeth Eisenhauer, Alla Karnovsky, Marcy Harris, J. Neil Otte</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Note: there were previously some related classes that distinguished the format of the informed consent form (e.g. electronic vs. paper). These distinctions are collapsed here. If making this distinction is necessary, the outputs of an instance of this class may be distinguished in their formatting. For instance, storing in an electronic format would entail an instance of an act of storing signed informed consent form bearing an 'has output' relation to an instance of an informed consent form that is in an electronic format.</rdfs:comment>
<rdfs:label>act of storing signed informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000124 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000124">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process of storage of signed informed consent form when the form is in digital format.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Marcy Harris, Alla Karnovsky, Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">storage of signed electronic informed consent form</obo:IAO_0000118>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">archiving signed electronic informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000125 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000125">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A process of storage of signed informed consent form when the form is in digital format.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Marcy Harris, Alla Karnovsky, Elizabeth Eisenhauer, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">storage of signed scanned paper informed consent form</obo:IAO_0000118>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">archiving signed scanned paper informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000126 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000126">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<obo:IAO_0000115 xml:lang="en">A temporal interval that represents a period of time during which a signed informed consent form is stored.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Elizabeth Eisenhauer, Asiyah Yu Lin, Alla Karnovsky, Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://answers.hhs.gov/ohrp/questions/7223</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">storage duration of signed informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000127 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000127">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<obo:IAO_0000115 xml:lang="en">A participation time that is the total length of time of subject's participation in a research study; from the time of enrollment to the completion of follow-up.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The term definition is adapted from NCIt definition of "Planned Duration of Study Subject Participation" (C70707) with modification. Compared to the NCIt definition, the ICO definition specifies research research study instead of a clinical study.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<obo:IAO_0000233>https://github.com/ICO-ontology/ICO/issues/35</obo:IAO_0000233>
<obo:ICO_0000091 xml:lang="en">C2347527</obo:ICO_0000091>
<obo:ICO_0000092 xml:lang="en">C70707</obo:ICO_0000092>
<rdfs:label xml:lang="en">planned duration of study subject participation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000128 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000128">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000154"/>
<obo:IAO_0000115 xml:lang="en">The potential future harm that may arise from participating the study research is to be explained to candidate</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">explaining risks of participation to participant candidate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000129 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000129">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form for human sample collection that is specifically for human saliva sample collection.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alla Karnovsky, Frank Manion, Yongqun He, Elizabeth Eisenhauer, Marcy Harris, Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.irb.umich.edu/policies/consent/</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">WEB: http://www.irb.umich.edu/policies/consent/samples/Sample_SalivaCollection.pdf</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">informed consent form for human saliva sample collection</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000131 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000131">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000111"/>
<obo:IAO_0000115 xml:lang="en">A review board approval number that is assigned by an institutional review board.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Elizabeth Eisenhauer, Yongqun He, Alla Karnovsky, Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">institutional review board approval number</obo:IAO_0000118>
<rdfs:label xml:lang="en">institutional review board approval number</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000133 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000133">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000154"/>
<obo:IAO_0000115 xml:lang="en">In order to make sure that the candidate is informed adequately from his or her perspective, the process of collecting, storing or destroying the sample collected from the study subject is to be explained.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">In the case of biobanking,collected tissue will be frozen and stored in a biorepository system. Other researchers will search and use the tissue for different purpose. The researchers may come from different organization and may need to access some of the personal information or may need to contact the study subject.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">explaining sample process and usage to participant candidate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000134 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000134">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000154"/>
<obo:IAO_0000115 xml:lang="en">In the case of promoting future data sharing, the usage of the data derived from a study is to be explained to the candidate.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">For example, in the genomic data projects, the study subject's sequence data maybe used outside of the original organization. In this case, the study subject's privacy need to be protected.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">explaining study derived data usage to participant candidate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000135 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000135">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000154"/>
<obo:IAO_0000115 xml:lang="en">In order to enable the candidate to make voluntary decision, the options for enhancing the protection of confidentiality for participants who have contributed personal information to a study is to be explained.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">http://www.qualitative-research.net/index.php/fqs/article/view/1024/2207.#g42</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">explaining record confidentiality to participant candidate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000136 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000136">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 xml:lang="en">A process in which a candidate makes a voluntary decision to join a study, following their consideration of adequate information presented to them regarding the study and their participation in it.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://depts.washington.edu/bioethx/topics/consent.html</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">participant candidate making voluntary decision of acceptance</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000137 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000137">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">In order for the consent valid, the candidate should be competent to understand what has been explained.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin.</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://depts.washington.edu/bioethx/topics/consent.html</obo:IAO_0000119>
<rdfs:label>obsolete assessment of participant candidate understanding</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000138 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000138">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that contains sections specific to procedures in vaccination.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">immunization consent form</obo:IAO_0000118>
<rdfs:label xml:lang="en">informed consent form for vaccination</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000139 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000139">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that is used for vaccination by Walgreens</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118>Walgreens Vaccine Administration Record Informed Concsent Form</obo:IAO_0000118>
<rdfs:label>obsolete Walgreens vaccine informed consent form'</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000140 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000140">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001000"/>
<obo:IAO_0000115 xml:lang="en">A questionnaire whose purpose is to aid in identifying whether an agent is eligible to participate in a process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">eligibility questionnaire</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000141 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000141">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000115 xml:lang="en">A textual entity that is a sentence in the interrogative mood.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">question textual entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000142 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000142">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that results in a legally effective consent status.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Frank Manion, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">legally effective consenting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000143 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000143">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A planned process of acknowledgement, or agreement, to participate in a procedure or study, where the participant is incapable of informed consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Asiyah Yu Lin, Yongqun He, Frank Manion, Chris Stoeckert, Jihad Obeid, Jonathan Bona, Mathias Brochhausen, 2018 Informed Consent Workshop</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">assent process</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">http://www.medtran.ru/eng/trials/protomechanics/ch3.htm</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.cancer.gov/about-cancer/treatment/clinical-trials/patient-safety/childrens-assent</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.hhs.gov/ohrp/regulations-and-policy/regulations/45-cfr-46/index.html#46.408</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777303/</obo:IAO_0000119>
<rdfs:comment xml:lang="en">According to the Common Rule, the IRB shall determine that adequate provisions are made for soliciting the assent of the children, when in the judgment of the IRB the children are capable of providing assent.</rdfs:comment>
<rdfs:comment xml:lang="en">Specifically, "assent" is a term used to express willingness to participate in research by persons who are by definition too young to give informed consent but who are old enough to understand the proposed research in general, its expected risks and possible benefits, and the activities expected of them as subjects.</rdfs:comment>
<rdfs:label>obsolete assent process</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000144 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000144">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in a human being who participates in a consenting process and eventually becomes legally effectively consented.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Frank Manion, Yongqun He, Mathias Bronchhausen, Chris Stoeckert, Jie Zheng, Jihad Obeid, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">legally effective consented participant role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000145 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000145">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which an agent's designated biological specimen is collected after the death of the agent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">postmortem donation of biological specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000146 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000146">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that represents the eligibility of a candidate according to a study protocol.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Frank Manion, Yongqun He, Mathias Brochhausen, William Duncan</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">eligibility of candidate participation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000147 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000147">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a participant who meets all eligibility criteria defined within a study protocol.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">NCI BBRB: Biorepositories and Biospecimen Research Branch</obo:IAO_0000119>
<rdfs:label xml:lang="en">candidate eligible for study role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000148 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000148">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a participant who does not meet all eligibility criteria defined within the study protocol.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">NCI BBRB: Biorepositories and Biospecimen Research Branch</obo:IAO_0000119>
<rdfs:label xml:lang="en">candidate ineligible for study role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000149 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000149">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which an agent contacts a participant of an informed consent process regarding opportunities related to future research.</obo:IAO_0000115>
<obo:IAO_0000117>Jonathan Vajda with ICO Workgroup in Ann Arbor (2018)</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Mathias Brochhausen, Jihad Obeid, Frank Manion</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://sbsirb.uchicago.edu/page/consent-form-templates-and-examples</obo:IAO_0000119>
<rdfs:label xml:lang="en">act of contact for future research</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000150 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000150">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process to screen the eligibility of a candidate for a study or procedure, verifying whether certain sufficient or necessary conditions for eligibility obtain.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Frank Manion, Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">eligibility screening process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000151 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000151">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in a person that, if realized, is realized in an eligibility screening process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Frank Manion, Yongqun He, J. Neil Otte</obo:IAO_0000117>
<rdfs:label>eligibility screening role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000152 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000152">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000117 xml:lang="en">Frank Manion, Yongqun He</obo:IAO_0000117>
<rdfs:label>obsolete eligibility screening person</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000153 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000153">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<rdfs:label>obsolete consenting to be contacted for tissue research</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000154 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000154">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process of communicating information about an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">explaining to participant candidate in informed consent process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000155 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000155">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A planned process that a person agrees to participate in a research project, which is a part of an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777303/</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">YH, 2018 Little Rock CTSOG ontology workshop</obo:IAO_0000117>
<rdfs:label>obsolete informed consent</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000156 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000156">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000810"/>
<obo:IAO_0000115 xml:lang="en">An informed consent process where the person who is being asked to consent is an adult.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://oprs.usc.edu/files/2017/04/Informed-Consent-Booklet-4.4.13.pdf</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777303/</obo:IAO_0000119>
<rdfs:label xml:lang="en">adult consent process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000157 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000157">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000810"/>
<obo:IAO_0000115 xml:lang="en">An informed consent process in which a parent reaches a decision concerning whether or not to grant consent on a minor's behalf, when the minor is incapable of providing consent for themselves.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">parental permission</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">parental permission consent</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">https://oprs.usc.edu/files/2017/04/Informed-Consent-Booklet-4.4.13.pdf</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777303/</obo:IAO_0000119>
<rdfs:label xml:lang="en">parental informed consent process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000158 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000158">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which a person decides not to provide consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of declining to provide consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000159 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000159">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000196"/>
<obo:IAO_0000115 xml:lang="en">An informed consent process in which the participant communicates consent orally rather than by filling out and signing a written form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, 2018 Little Rock CTSOG ontology workshop</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://oprs.usc.edu/files/2017/04/Informed-Consent-Booklet-4.4.13.pdf</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777303/</obo:IAO_0000119>
<rdfs:label xml:lang="en">informed verbal consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000160 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000160">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000810"/>
<obo:IAO_0000115 xml:lang="en">An informed consent process in which the participant is not able to read and write in the language of the informed consent form, but is aided in understanding the informed consent process by a translation into the agent's native language.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://oprs.usc.edu/files/2017/04/Informed-Consent-Booklet-4.4.13.pdf</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777303/</obo:IAO_0000119>
<rdfs:label xml:lang="en">consenting in short form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000161 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000161">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which a biological sample from a subject is collected for testing.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/books/NBK110047/</obo:IAO_0000119>
<rdfs:label xml:lang="en">biological sample collecting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000162 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000162">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000161"/>
<obo:IAO_0000115 xml:lang="en">A biological sample collecting in which a tissue sample from a subject is collected for testing.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/books/NBK110047/</obo:IAO_0000119>
<rdfs:label xml:lang="en">tissue sample collecting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000163 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000163">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000161"/>
<obo:IAO_0000115 xml:lang="en">A biological sample collecting in which a blood sample from a subject is collected for testing.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/books/NBK110047/</obo:IAO_0000119>
<rdfs:label xml:lang="en">blood sample collecting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000164 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000164">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that represents a study participant withdrawing from the study and agreeing to have the participant sample stored for unlimited time.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">2018 CTSOG informed consent ontology workshop in Little Rock (http://ncorwiki.buffalo.edu/index.php/Ontology_of_Informed_Consent:_An_Approach_to_Specimen_and_Data_Sharing)</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">subject withdrawal with sample stored for unlimited time</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000165 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000165">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that represents a study participant withdrawing from the study and agreeing to have the participant sample stored for a limited time period.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">2018 CTSOG informed consent ontology workshop in Little Rock (http://ncorwiki.buffalo.edu/index.php/Ontology_of_Informed_Consent:_An_Approach_to_Specimen_and_Data_Sharing)</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">subject withdrawal with sample stored for limited time</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000166 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000166">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000232 xml:lang="en">Moved to d-acts</obo:IAO_0000232>
<rdfs:label>obsolete deontic role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000167 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000167">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A deontic role that if realized is realized by its bearer conducting or overseeing genetic research on the genome of a human donor.</obo:IAO_0000115>
<rdfs:comment xml:lang="en">Note: this term wll be transferred to d-acts. - CTSOG ontology workshop 2018 Little Rock</rdfs:comment>
<rdfs:label>obsolete permittee deontic role in genetic research</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000168 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000168">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A deontic declaration that has output a permittee role that permits genetic research on a human donor as a specified outcome.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<rdfs:comment xml:lang="en">will add an equivalent class axiom
'has specified output' some 'permittee deontic role in genetic research'</rdfs:comment>
<rdfs:label>obsolete genetic research permission deontic declaration</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000169 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000169">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">a role that inheres in a human subject who participates in an assending process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">assenter role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000170 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000170">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001000"/>
<obo:IAO_0000115 xml:lang="en">A questionnaire that is filled up with answers.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">filled questionnaire</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000171 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000171">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000115 xml:lang="en">A textual entity that is the recorded response to a multiple choice question.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">filled multiple choice text entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000172 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000172">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000171"/>
<obo:IAO_0000115 xml:lang="en">A filled multiple choice text entity that records a response indicating 'yes' to a multiple choice question.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">yes answer text entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000173 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000173">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000171"/>
<obo:IAO_0000115 xml:lang="en">A filled multiple choice text entity that records a response indicating 'no' to a multiple choice question.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">no answer text entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000174 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000174">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves the filling of an informed consent form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">filling informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000175 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000175">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves the filling of a questionnaire form that includes a list of questions.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Asiyah Yu Lin</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">filling questionnaire</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000176 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000176">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A deontic role that if realized is realized by its bearer conducting or overseeing genetic research on the genome of a human donor.</obo:IAO_0000115>
<rdfs:comment xml:lang="en">Note: this term wll be transferred to d-acts. - CTSOG ontology workshop 2018 Little Rock</rdfs:comment>
<rdfs:label>obsolete permittee deontic role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000177 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000177">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000196"/>
<obo:IAO_0000115 xml:lang="en">An informed consent for a subject agrees not to have financial benefit in the future.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Christoph Brochhausen, Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">consenting not to have financial benefit</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000178 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000178">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process for a subject agrees not to be informed about any incidental finding.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Christoph Brochhausen, Yongqun He</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">consenting to not to be informed about incidental finding</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000179 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000179">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process for an unspecified range of future research subject to a few content or process restrictions.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Frank Manion, Yongqun He, 2018 Little Rock CTSOG ontology workshop</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://www.hhs.gov/ohrp/sachrp-committee/recommendations/attachment-c-august-2-2017/index.html</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791589/</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">broad consent process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000180 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000180">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A broad consent that is for an unspecified range of future research subject to a few content or process restrictions with biological sample.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791589/</obo:IAO_0000119>
<rdfs:label>obsolete process of providing broad consent for research with biological sample</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000181 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000181">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves a human biological specimen originally collected for the purpose of treatment or a different investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Frank Manion, Yongqun He, 2018 Little Rock CTSOG ontology workshop</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://www.hhs.gov/ohrp/sachrp-committee/recommendations/attachment-c-august-2-2017/index.html</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791589/</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">Note: not sure if the parent class should be 'investigation' or 'planned process.'</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">This definition is provisional, as 'secondary use' may apply to non-specimen entities. Adapted from the defintion found here: https://sunnybrook.ca/research/content/?page=sri-crs-reo-faq-secondaryusedata</obo:IAO_0000232>
<rdfs:label xml:lang="en">secondary use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000182 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000182">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000119 xml:lang="en">https://www.ncbi.nlm.nih.gov/pubmed/15360890</obo:IAO_0000119>
<rdfs:label>obsolete consenting to the secondary use of EHR</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000184 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000184">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000232 xml:lang="en">Note that some of these are defined classes.</obo:IAO_0000232>
<rdfs:label>obsolete NEW_CLASSES</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000185 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000185">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000085"/>
<obo:IAO_0000115 xml:lang="en">An informed consent form that is adapted to the cognitive capacities of someone with significant mental impairment.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Jonathan Vajda</obo:IAO_0000117>
<rdfs:label xml:lang="en">informed assent form for cognitively impaired</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000186 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000186">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000008"/>
<obo:IAO_0000115 xml:lang="en">A temporal region during which some act is permitted.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Yongqun He, Jonathan Vajda</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This class is under group discussion as of 03/26/2019.</obo:IAO_0000232>
<rdfs:label xml:lang="en">permission temporal region</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000187 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000187">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A deontic role, which may be realized in an Act of Consent, where the bearer of the legal representative role consents on behalf of a person who lacks the capability to provide consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">It is a requirement of bearing a legal representative role in some jurisdiction(J) that one also bears a competency to consent in (J).</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">Mathias says this shouldn't mention 'act of consent'. I think the idea is that our definition is narrower than the class label indicates.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">Note: Consent roles are created by Acts of Consent. It follows that one can’t be a consenter and bear a consenter role just because one participated in an informed consent process. Here, one would be a mere research candidate or human subject or...etc, who participated in an informed consent process. Assenter Role, likewise, is the output of an Act of Communicating Assent. Both these roles are backward looking--i.e. They are created by the processes of assent and consent and do not pre-date them. By contrast, ‘Legal Representative Role’ and ‘Permission Role’ are not, by definition, tied to Acts of Consenting and Acts of Assenting. Such roles are the output of other processes, including ‘Act of Permitting’ in the latter case, and perhaps ‘Act of Legal Representative Authorization’ in the former.</obo:IAO_0000232>
<rdfs:label xml:lang="en">legal representative role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000188 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000188">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000230"/>
<obo:IAO_0000115 xml:lang="en">A role borne by a human being who is part of a group of individuals and acts as a contact person for the group.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<rdfs:label xml:lang="en">organization-specified contact role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000189 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000189">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes a human being who is to bear a contact role.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">contact directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000190 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000190">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes potential benefit or estimates the likelihood of benefit.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda, Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This is circulular. 'Benefit' and 'risk' definitions forthcoming.</obo:IAO_0000232>
<rdfs:label xml:lang="en">description of participation benefit</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000191 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000191">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A document part that describes the action types to be permitted.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<rdfs:label>obsolete description of allowed action types</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000192 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000192">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A description of allowed action types that has in view a wide, unspecified range of action types, and is restricted only by a regulator body.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">description of broad consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000193 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000193">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process of providing information according to prompts on a form.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of filling out form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000194 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000194">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A process that is carried out by a conscious being or an aggregate of conscious beings, and is spontaneous, directed towards another conscious being or another aggregate of conscious beings, and that needs to be perceived.</obo:IAO_0000115>
<obo:IAO_0000232 xml:lang="en">This is a D-Act Term, included here as a placeholder untill D-acts is imported.</obo:IAO_0000232>
<rdfs:label>obsolete social act (placeholder)</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000195 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000195">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021009"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000199"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A social act in which an agent bearing a deontic power role and realizes that role in the creation of a permission role.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Axiom: Every ‘Act of permitting’ has process part some (‘Speech Act’ or ‘Document Act’).
Note: This class is very general, and doesn’t only apply to consent and healthcare contexts.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">In contrast to the 'authentication' (see OMRSE), an act of permitting always involves a flow of power, in which one who grants permission has a power, and the agent to whom permission is granted gains access to a power that flows from that of the granter. By contrast, although it may be the case that a person who authenticates has power, this power is only the power to authenticate or verify, and this power does not flow to the authenticated document or identity.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">Note: ‘Act of permitting’, ‘act of consenting’, and ‘act of communicating assent’ are all success terms, which is to say that no ‘act of permitting’ does not issue a permission, no ‘act of consenting’ does not issue a consent, and no ‘act of communicating assent’ does not issue an assent.</obo:IAO_0000232>
<rdfs:label xml:lang="en">act of permitting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000196 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000196">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ICO_0000195"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000810"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000195"/>
<obo:IAO_0000115 xml:lang="en">An act of permitting that is a process part of some informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Note: This class is very general, and doesn’t only apply to consent and healthcare contexts. There may be further subclasses of consenting for which there are also required process parts, such as a process of informing a patient of the risks associated with a medical procedure or research investigation.
Also, 6/28: Mathias writes: This definition is probably incorrect. I assume we don't want to affirm that only within informed consent we do find acts of consenting.</obo:IAO_0000232>
<rdfs:label xml:lang="en">act of informed consenting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000197 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000197">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115 xml:lang="en">An act of communicating one’s agreement.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of communicating assent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000199 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000199">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021008"/>
<obo:IAO_0000115 xml:lang="en">A deontic role that inheres in an agent and which permits certain actions.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Important Note: When we use ‘consent’ to talk about the thing provided to an investigator then what we are referring to is a permission role, that was the output of an Act of Consent. This is all consent is, per this representation.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">Note: This may become ‘permittee role’ in order to better distinguish it from the corresponding ‘permittor role’ (the person with the deontic power to grant permissions to others).</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">Note: Typically, in the context of consent, a permission role will inhere in a clinician or investigator as a result of an act of permitting, but possibly an act of authorizing. Authorizing is different from permitting, but this needs to be worked out. Perhaps one has provided permission, but the process and the documentation need to be authorized by some authority prior to a clinician acquiring a permission role. There is also the case Chris Stockert raised, where an organization authorizes some data or specimens to be used, despite no consent or assent having been provided.</obo:IAO_0000232>
<rdfs:label xml:lang="en">permission role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000200 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000200">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A deontic power role that, if realized, may permit an Act of Consent and thereby create a permission role, or revoke or modify a previously provided permission role created by permitting an Act of Consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Note: A Consent Power Role inheres in all those who bear a legal right to consent. Such a role represents a de jure right that holds within some socio-legal jurisdiction. It follows that one may bear an instance of a consent power role within one jurisdiction but one may lack an instance of a consent power role within a second jurisdiction, given that one’s capability to consent may satisfy legal conditions in the former jurisdiction but not in the latter.</obo:IAO_0000232>
<rdfs:label>obsolete consent power role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000201 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000201">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000220"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A cognitive capability inhering in some agent, which may be realized in an Act of Consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Note: Capability-talk is fraught and so attention to this particular, somewhat stipulative notion is necessary.
First: Capabilities are BFO:Dispositions. Hence, we’re not talking about institutional power, which will be represented separately using deontic roles. This is compatible with institutional rules requiring a particular capability.
Second: Like roles, capabilities can have other capabilities as parts. Thus, the capability to consent requires, as part, the capability to understand information, the capability to appreciate the consequences of one’s actions, and other capabilities related to a basic, agential capacity to be reasons-responsive. These capacities may be realized in other sub-parts of the informed consent process, and they may be identified in processes of cognitive assessment.
Third: Capabilities may be assessed along a scale, with some having a greater capability to consent and some having a lesser ability to consent. The same capability at the same degree may pass muster in some jurisdictions but fail to pass in others. When it does succeed in passing some legal requirement, then the bearer of the capability has a Consent Power Role and their capability to consent now counts as a competency.
Fourth: Capabilities are cognitive dispositions. As such, the class ‘capability to consent’ is not intended to be a catch-all for all the necessary conditions for legal consent. For instance, being under the age of 18 is not part of an instance of a capability to consent, but the capability to understand risks and benefits may be.
Fifth: A capability that is so low on the scale as to not pass any tests is no longer a capability but a liability. The distinction between capabilities and liabilities may not be vague ontologically, but may be quite difficult to suss out epistemologically. More to the point: This is perhaps the most revisionist aspect of this reading of capabilities, for it requires that in some particular legal context, we might need to say that someone has a capability to consent that is sufficiently low as to not qualify as a competency within that legal context. Since ‘capability’ is often also used in a bi-valent, non-scalable manner (i.e. one either is capable or one is not capable) the notion here involves some stipulation. For this bi-valent notion, we use ‘competent’ (i.e. one either is competent or incompetent).
In addition as of this writing (July 2018): There is work on capabilities occurring presently within the National Center for Ontological Research (NCOR), so this reading of capabilities may need revising as that work moves forward.</obo:IAO_0000232>
<rdfs:label xml:lang="en">capability to consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000202 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000202">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000201"/>
<obo:IAO_0000115 xml:lang="en">A capability to consent that is sufficiently robust as to pass the legal requirements of some jurisdiction.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Axiom: all l all c all t all m (competencytoconsent(m) & inheresin(m,x,t) -> (exists l exists c (legalpowerrole(l) & capabilitytoconsent(c) & (exists r exists o (hasorganizationalcontext(l,r,t) & hasorganizationalcontext(l,o,t) & r=o)) & inheresin(l,x,t) & inheresin(c,x,t)) -> (m=c))).
%If one bears a competency to consent, then one bears a legal power role and a capability to consent in the same legal context at the same time and the competency to consent is identical to the capability to consent.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">One may have the same capability to consent, but whether that capability to consent amounts to a competency might vary between jurisdictions that impose different requirements upon the bearer.</obo:IAO_0000232>
<rdfs:label xml:lang="en">competency to consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000203 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000203">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A role that is the output of an act of assent and which inheres in a human being, who, because they fail to satisfy certain criteria for consent, is thereby allowed the aid of a legal representative who aids them in an Act of Consent, and, in some contexts, may be realized in revoking or modifying the permission role that was output of the informed consent process of which the the Act of Assent was a process part.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label>obsolete assenter role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000204 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000204">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ICO_0000220"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ICO_0000225"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000197"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000220"/>
<obo:IAO_0000115 xml:lang="en">An agent who has communicated their assent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">assenter</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000205 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000205">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ICO_0000223"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000196"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<obo:IAO_0000115 xml:lang="en">An agent who, at some time, was the bearer of a consent power role, which was, in fact, realized in an act of informed consenting, and who, as a result of this act of informed consenting, now bears a consenter role.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A consenter role may be realized, for example, in the withdraw of consent.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">consenter</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000206 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000206">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A deontic role that is output of some Act of Consent and, in some contexts, may be realized in revoking or modifying the permission role that was output of the same Act of Consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">May be deleted. Consenter role just seems like permission role issued by an act of consenting.</obo:IAO_0000232>
<rdfs:label>obsolete consenter role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000213 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000213">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">A document act input document that explains all relevant information to assist a human being in understanding the expectations and requirements of participation in a process, and whose purpose is to assist in obtaining consent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Note: instances of 'incomplete informed consent form' include both blank informed consent forms that are waiting to be used in a process of informed consent, as well as those that have been left blank by a patient, whether on purpose or in error. Those that have been left blank on purpose have been used in a process of informed consent, where the patient must have reached a decision.</rdfs:comment>
<rdfs:label xml:lang="en">incomplete informed consent form</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000214 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000214">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000001"/>
<obo:IAO_0000115 xml:lang="en">A document act input document that has, as part, an incomplete informed consent form, along with some additional parts, such as a signature, stamp, or initials, which serve as a record to an act of consent that had the incomplete informed consent form as a specified input.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">complete informed consent form indicating consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000215 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000215">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021008"/>
<obo:IAO_0000115 xml:lang="en">A deontic role that, if realized, is realized in the creation, modification, or revoking of other deontic roles.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">deontic power role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000217 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000217">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves altering an information content entity that is associated with an individual, such that such association is lost or inaccessible.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of anonymizing</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000218 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000218">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000217"/>
<obo:IAO_0000115 xml:lang="en">An act of anonymization that alters an information content entity by removing information content which identifies that individual.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of removing identifiable information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000220 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000220">
<owl:equivalentClass>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
</owl:unionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 xml:lang="en">A material entity (either a human being or an aggregate of humans such as an organization) which is active in a process or has the relevant capabilities of intentionality.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<rdfs:label xml:lang="en">agent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000221 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000221">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115 xml:lang="en">A social act in which information that is thought to be true, salient, or which is held to have a high degree of certainty is communicated to an agent that previously lacked that information.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">If I communicate falsehoods, I do not inform--I mis-inform.</obo:IAO_0000232>
<rdfs:label xml:lang="en">act of informing</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000222 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000222">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that is a handwritten depiction of a name.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda, Cooper Stansbury, J. Neil Otte.</obo:IAO_0000117>
<rdfs:label xml:lang="en">signature</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000223 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000223">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000215"/>
<obo:IAO_0000115 xml:lang="en">A deontic power role that may be realized in an act of consent that is a process part of an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">a consent power role is a legal right that holds within a jurisdiction and is a necessary requirement to bear a competency to consent.</obo:IAO_0000232>
<rdfs:label xml:lang="en">consent power role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000226 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000226">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/StasisOfGenericallyDependentContinuant"/>
<obo:IAO_0000115 xml:lang="en">A stasis of generically dependent continuant that has participant some information content entity which, during the stasis, is unable to be used to identify some agent which the information is about.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda, Cooper Stansbury, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">An information content entity that has previously undergone the process 'act of anonymization' participates in this stasis.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">We expect to add a subclass axiom: 'preceded by' some 'Act of Anonymizing'</obo:IAO_0000232>
<rdfs:label xml:lang="en">stasis of anonymization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000227 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000227">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves placing a material entity in some location in order to maintain possession of it.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of storing</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000228 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000228">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which data possessed by one person or organization is shared with one or more other persons or organizations.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of data sharing</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000229 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000229">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000230"/>
<obo:IAO_0000115 xml:lang="en">A contact person role that is the output of either a human subject or patient assigning that person as their point of contact.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">emergency contact role</obo:IAO_0000118>
<rdfs:label xml:lang="en">human subject-specified contact person role</rdfs:label>
<rdfs:seeAlso xml:lang="en">organization-specified contact role</rdfs:seeAlso>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000230 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000230">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a person who is a designated contact for some other agent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The subclasses of 'contact person role' distinguish two types: a contact person who has been designated by an organization for others (primarily patients and human research subjects in clinical settings) to contact, and a contact person whom an agent has specified for an organization to contact in the event that the organization needs to contact the patient. Examples of the latter include 'emergency contact' persons, who are frequently specified in a form.</rdfs:comment>
<rdfs:label xml:lang="en">contact person role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000231 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000231">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<obo:IAO_0000115 xml:lang="en">A site within which a deontic power may be realized, where that deontic power inheres in a formally created regulatory body.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">'Jurisdiction' is often defined in two senses: (1) a geopolitical context (BFO site), or (2) a power. We define jurisdiction as a BFO site, identifiable through shared context of other entities, like a country or state border, or the grounds of an institution. The term ‘deontic power role’ reflects the sense of ‘power’ sometimes used to describe jurisdiction.</obo:IAO_0000232>
<rdfs:label xml:lang="en">jurisdiction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000232 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000232">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An organization that has a deontic power role prescribed by some regulatory document that occurs in a stasis of regulation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label>obsolete regulatory body</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000233 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000233">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000115 xml:lang="en">A document that either prescribes actions or prescribes the permissions, obligations, restrictions, or protections relating to public or legal policy.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Rules, legal specifications, guidelines (both categorical and hypothetical), that exist together in one regulatory document. Regulations may contain a single, or multiple rules.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">The clause ‘permissions, obligations, restrictions, or protections’ will be replaced with more general superclass, likely from d-acts, when that infrastructure becomes available. IOU Code.</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">regulatory document</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000234 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000234">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000233"/>
<obo:IAO_0000112 xml:lang="en">‘HIPAA documents,’ ‘The Common Rule,’ an ‘Informed Consent Regulatory Document.’</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A regulatory document designed to prescribe research involving human subjects.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">human subject research regulatory document</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000235 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000235">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000233"/>
<obo:IAO_0000115 xml:lang="en">A regulatory document designed to prescribe an informed consent process or inputs in an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000425 xml:lang="en">‘Informed Consent Waivers,’ ‘Informed Consent Exemptions.’</obo:IAO_0000425>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">informed consent regulatory document</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000236 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000236">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000055"/>
<obo:IAO_0000112 xml:lang="en">Do action (x).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A rule in an informed consent regulatory document that prescribes either an informed consent process or deontic roles inhering in agents that participate in an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">informed consent rule</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000237 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000237">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000055"/>
<obo:IAO_0000115 xml:lang="en">A rule in an informed consent regulatory document that prescribes an informed consent process and has part trigger condition description.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Those conditions that have important implications are enumerated in a specification of condition.</obo:IAO_0000232>
<obo:IAO_0000600 xml:lang="en">The logical form of a conditional rule is as follows: if condition (y) obtains, then perform action (x).</obo:IAO_0000600>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">conditional informed consent rule</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000238 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000238">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000055"/>
<obo:IAO_0000115 xml:lang="en">A rule in an informed consent regulatory document that prescribes deontic roles that may be realized in an unspecified range of activities, or which is subject to few restrictions.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">broad consent rule</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000239 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000239">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes information that must be revealed and prescribes to whom that information must be revealed.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">disclosure directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000240 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000240">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000112 xml:lang="en">A description of who can consent (but not the conditions required to be realizable).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes a deontic power role or the process that realizes it.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">deontic power role directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000241 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000241">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes the limits of disclosure regarding an agent’s identity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">May need ‘Conditional Confidentiality Directive' in the future.</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label>obsolete confidentiality directive</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000242 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000242">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000112 xml:lang="en">A ‘signature section,’ an ‘I understand’ clause, or a ‘checkbox.’</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A directive information entity that, when signed, stamped, or initialed realizes a deontic role as described by the document specifications, or specifications in another related document.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">user input directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000243 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000243">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that enumerates the results if a trigger condition describing failure to comply with a rule is met.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, J. Neil Otte, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">consequent directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000244 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000244">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A 'directive information entity' that prescribes an allowable action, where that action is otherwise impermissible.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) There is some ambiguity regarding process repition. This distinction may point to the central question of whether or not we permit 'universals' or . Take the following example: In the case of 'permission to destroy excess tissue' the instance of a 'process of destruction' is permitted only once. However, in the case of 'pemission to share data' this process may be performed multiple times.</rdfs:comment>
<rdfs:label xml:lang="en">permission directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000245 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000245">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A conditional specification that prescirbes a permission, should some trigger condition obtain.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">Permission to do (x), if condition (y).</obo:IAO_0000600>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label>obsolete conditional permission directive</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000246 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000246">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes actions that are impermissible.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">When particpating in an informed consent process (a), do not do action (y).</obo:IAO_0000600>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">restriction directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000247 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000247">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000001"/>
<obo:IAO_0000115 xml:lang="en">A conditional specification that prescirbes an impermissibility, should some trigger condition obtain.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">When particpating in an informed consent process (a), if conditon (x) do not do action (y).</obo:IAO_0000600>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">conditional restriction directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000248 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000248">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes an obligation that is realized a deontic role that is the output of a document act.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">obligation directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000249 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000249">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000001"/>
<obo:IAO_0000115 xml:lang="en">A conditional specification that prescirbes an obligation, should some trigger condition obtain.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">conditional obligation directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000250 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000250">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes the agent that is liable if a trigger condition is met.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">liability directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000251 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000251">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000112 xml:lang="en">The section of an informed consent document that describes a clinical procedure that the agent is consenting to.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes a medical procedure.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of medical procedure</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000252 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000252">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that describes some state of affairs such that, if that state of affairs holds, some other prescription follows.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">An antecedent.</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">trigger condition directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000253 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000253">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000117 xml:lang="en">A descriptive information content entity that reports that participation in the procedures described elsewhere in the document are voluntary.</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of voluntary participation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000254 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000254">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in an agent as a result of that agent having observed some process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte and Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">Typically, someone who bears a witness role has observed some history, such that one may attest to what has occurred.</obo:IAO_0000600>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">witness role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000255 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000255">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes some process for withdraw from another planned process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">withdrawal from participation directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000256 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000256">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115 xml:lang="en">A temporal region identifier that designates the temporal region during which a living person is alive, and where the temporal region is such that the living person is qualified to exercise a deontic power within a legal jurisdiction.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">legal age</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000257 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000257">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115 xml:lang="en">A social act in which formal or official endorsement of some entity is communicated.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte and Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:comment xml:lang="en">This 'act of approving' is distinct from the mental act of approving.</rdfs:comment>
<rdfs:label xml:lang="en">act of approving</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000258 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000258">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes the language that must be used in an informed consent process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">consent language directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000259 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000259">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes some process that may be elected.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of alternative</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000260 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000260">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes expressions or implications of threat that may compel an agent to act out of fear against the agent's will.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">It may be necessary to define processes of coercion in addition to descriptions of the process.</obo:IAO_0000232>
<obo:IAO_0000600 xml:lang="en">An international review board (IRB) may require a research proposal to identify ways in which a participant may be under undue influence. For example, a prisoner may feel compelled, given their vulnerability, to provide more information or cooperation in a study than they would normally consent to, because of the benefits they might receive.</obo:IAO_0000600>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of coercion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000261 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000261">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000232 xml:lang="en">"§46.102(f) Human subject means a living individual about whom an investigator (whether professional or student) conducting research obtains (1) Data through intervention or interaction with the individual, or 2) Identifiable private information. Intervention includes both physical procedures by which data are gathered (for example, venipuncture) and manipulations of the subject or the subject's environment that are performed for research purposes. Interaction includes communication or interpersonal contact between investigator and subject. Private information includes information about behavior that occurs in a context in which an individual can reasonably expect that no observation or recording is taking place, and information which has been provided for specific purposes by an individual and which the individual can reasonably expect will not be made public (for example, a medical record). Private information must be individually identifiable (i.e., the identity of the subject is or may readily be ascertained by the investigator or associated with the information) in order for obtaining the information to constitute research involving human subjects."</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label>obsolete information about participant</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000262 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000262">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000115 xml:lang="en">A disposition to abnormality realized in cognitive processes that are qualitatively below those of individuals belonging to some type, to which the bearer of the disposition also belongs.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/HP_0100543"/>
<obo:IAO_0000232 xml:lang="en">Adapted from http://purl.obolibrary.org/obo/HP_0100543</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<dc:date xml:lang="en">Imported and adapted 8.22.2018</dc:date>
<rdfs:label xml:lang="en">cognitive impairment</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000263 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000263">
<rdfs:subClassOf rdf:resource="http://purl.unep.org/sdg/SDGIO_00000024"/>
<obo:IAO_0000115 xml:lang="en">A vulnerability due to exposure to a depressed or impoverished economic environment.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">economic vulnerability</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000264 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000264">
<rdfs:subClassOf rdf:resource="http://purl.unep.org/sdg/SDGIO_00000024"/>
<obo:IAO_0000115 xml:lang="en">A vulnerability due to exposure to a harsh learning environment.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">educational vulnerability</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000265 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000265">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process of storing the document output of an 'act of consent' for future use.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">act of archiving informed consent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000266 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000266">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes a method of some act of communicating.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">contact method description</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000267 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000267">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes some process in which vulnerable individuals participate.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">vulnerable population directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000268 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000268">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes the nondisclosure of information.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">confidentiality directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000269 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000269">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which some entity provides information to another entity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">adapted from "communicate." Merriam-Webster.com. 2011. https://www.merriam-webster.com (30 August 2018).</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">See ICO: 'act of informing.' This class is perhaps not needed.</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:comment xml:lang="en">A note: 'entity' rather than 'agent' is used in this definition in order to allow that software can communicate with other software. However, it should be noted that this definition of communication excludes broader meanings, such as unintentional sharing of information.</rdfs:comment>
<rdfs:label xml:lang="en">act of communicating</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000270 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000270">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label>obsolete benefit</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000271 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000271">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label>obsolete risk</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000272 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000272">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000117 xml:lang="en">A descriptive information content entity that describes the expected duration of participation of some agent in an investigation.</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of expected study participation duration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000273 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000273">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes some research process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">research method directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000274 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000274">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes the conditions under which compensation is due to some agent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte and Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of conditional compensation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000275 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000275">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes an emotional state of mental or physical uneasiness.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of discomfort</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000276 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000276">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes biospecimens that have been collected.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of collected biospecimens</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000277 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000277">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes information that may be collected or the processes of information collection.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of collected information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000278 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000278">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000305"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes how biospecimens will be used.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of future biospecimen use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000279 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000279">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes some procedure for obtaining information only available at some future time.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of procedure for obtaining further information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000280 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000280">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000112 xml:lang="en">For instance, a patient may assert a preferred mode of communication for contact in the future. This may be given in terms of permitting a communication via email, phone call, etc. and it may mention the address or number to be used.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes methods for contacting an agent.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">contact method directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000281 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000281">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte and Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">A descriptive information content entity that describes some conditions that constitute unauthorized disclosure of information.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">It is possible that classes like this will be useful in conjuction with descriptions of risk as in: 'description of risk of breach of confidentiality.'</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of breach of confidentiality</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000282 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000282">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes legal responsibility that an entity has due to some risk.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda, Cooper Stansbury, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">description of liability</obo:IAO_0000118>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of legal responsibility</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000283 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000283">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A description of risk that describes the magnitude of potential financial loss.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of financial risk</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000284 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000284">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A description of risk that describes the magnitude or probability of damage to the reputation of an agent in a social context.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of reputational risk</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000285 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000285">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000112 xml:lang="en">E.g., "There are several definitions available for the term 'vulnerable population', the words simply imply the disadvantaged sub-segment of the community requiring utmost care, specific ancillary considerations and augmented protections in research. The vulnerable individuals’ freedom and capability to protect one-self from intended or inherent risks is variably abbreviated, from decreased freewill to inability to make informed choices."
Preethi Shivayogi (2013). Vulnerable population and methods for their safeguard. Perspectives in clinical research, 4(1), 53-7.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A role that inheres in an agent or group of agents that is the output of a process during which the agent or group of agents is designated as belonging to a vulnerable group.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte and Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Note: It is possible to belong to a vulnerable population and yet not bear a disposition of vulnerability. Typically, when a person is held to be a vulnerable individual, this is a designation that applies by fiat in virtue of their membership to some legally designated group, and not based on a clear investigation of their individual case. Hence, it seems prudent here to use roles for this purpose.</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">vulnerable individual role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000286 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000286">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in a regulatory body that, if realized, is realized in some act of regulatory supervision.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">regulatory oversight role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000287 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000287">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a Homo sapiens that, if realized, is realized within the organizational context of a legal jurisdiction, when the bearer fails to meet the legal threshold for adulthood.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">It is possible to create further defined classes here, such as 'abused minor role' that is a minor that participated in a process of abuse.</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">minor role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000288 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000288">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000030"/>
<obo:IAO_0000115 xml:lang="en">A woman who is pregnant.</obo:IAO_0000115>
<obo:IAO_0000232 xml:lang="en">Could reuse: http://purl.obolibrary.org/obo/ontoneo/ONTONEO_00000197</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">pregnant woman</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000289 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000289">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a Homo sapiens that is realized in a process of incarceration.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Note from Jonathan Vajda: Depending on the level of granluarity, we could have prisoner role, incarcerated role, etc. and these roles would differentiated by what kind of stasis of incarceration necessary.</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">prisoner role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000290 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000290">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000115 xml:lang="en">A document designed for the purpose of assisting in an act of waiving, and which contains both some description of waiver and some waiver directive.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">waiver document</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000291 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000291">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes an entity that provides positive motivation for some material entity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">From NCI Thesaurus OBO Edition: Incentive: A benefit, consideration, or positive motivational influence, financial or otherwise, given to induce a specific action. [def-source: NCI]</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of incentive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000292 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000292">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000272"/>
<obo:IAO_0000115 xml:lang="en">A protocol that is formal plan of a research activity, including the objective, rationale, design, materials, and methods for the conduct of the activity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">This term was adapted from: http://purl.obolibrary.org/obo/NCIT_C70817</obo:IAO_0000232>
<rdfs:label xml:lang="en">study protocol</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000293 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000293">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes the information that is permitted to be shared or the processes for sharing that information.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">data sharing directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000294 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000294">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes the process of transferring a permission role from one bearer to another.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Note: Strictly speaking, of course, roles are not transferred; rather, the transfer of a permission involves the role of one agent ceasing to exist, and the role of a second agent coming into existence.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">permission transfer directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000295 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000295">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes the processes that involve some entity as a participant.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">future use directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000296 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000296">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes the negative impact or harm that may befall an agent who withdraws from an investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of consequences of voluntarily withdrawal</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000297 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000297">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/StasisOfGenericallyDependentContinuant"/>
<obo:IAO_0000115 xml:lang="en">A stasis of generically dependent continuant that has participant some information content entity and during which that information content entity is recognized within that jurisdiction and directs governance within that jurisdiction.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">stasis of regulation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000298 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000298">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000297"/>
<obo:IAO_0000115 xml:lang="en">A stasis of regulation that has participant some information content entity and during which that information content entity is recognized as a law within the jurisdiction in which the stasis of regulation is occurring.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, J. Neil Otte</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">The ‘stasis of law’ designates the spatial and temporal conditions that need to be met in order for a regulatory document to be a ‘law’ or a ‘policy.’ This is necessary because laws, or other regulations are overturned, made obsolete, ect..., but material entities concretizing them persist.</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">There are many definitions and conceptions of law, which can be elaborated in further work. There is a concern not to define law in such a way that we narrow the scope beyond an international context.</obo:IAO_0000232>
<rdfs:label xml:lang="en">stasis of law</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000299 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000299">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000252"/>
<obo:IAO_0000115 xml:lang="en">A trigger condition directive that prescribes conditions for which a individual bears a vulnerability role or disposition of vulnerability, or a population of such individuals.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Jonathan Vajda, Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">See http://purl.unep.org/sdg/SDGIO_00000024 (Vulnerability): A disposition of an entity to undergo undesirable change in response to some exposure.</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">protection directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000300 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000300">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which a regulatory body directs or monitors another planned process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury and J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">act of regulatory supervision</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000301 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000301">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 xml:lang="en">A process of mistreating an entity such that the mistreated entity is harmed.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, J. Neil Otte, and Jonathan Vajda</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">adapted from "abuse." Merriam-Webster.com. 2011. https://www.merriam-webster.com (30 August 2018).</obo:IAO_0000119>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">act of abuse</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000302 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000302">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000269"/>
<obo:IAO_0000115 xml:lang="en">An act of communicating in which information is shared, overriding or violating a judgment that the information should not be shared.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte and Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">It is possible that there are meaningful defined classes here like: 'act of authorized disclosure' and 'act of unauthorized disclosure.'</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">act of disclosure</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000303 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000303">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes a research procedure.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of research procedure</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000304 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000304">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000305"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes how data will be used.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of future data use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000305 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000305">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes future use of material or information.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of future use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000306 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000306">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<obo:IAO_0000115 xml:lang="en">A social act of relinquishing a right, claim, or privilege.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Jonathan Vajda</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">"waiver." Merriam-Webster.com. 2011. https://www.merriam-webster.com (30 August 2018).</obo:IAO_0000119>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">act of waiving</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000307 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000307">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes an act of waiving.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">waiver directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000308 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000308">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A descriptive information content entity that describes a directive information content entity that can be ignored.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">adapted from: http://purl.obolibrary.org/obo/NCIT_C113777</obo:IAO_0000232>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">description of waiver</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000309 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000309">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a Homo sapiens that, if realized, is realized in being a passive participant in some act of abuse process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Jonathan Vajda</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A passive participant in such a process would mean that the act of abuse has this entity as its target; i.e., the bearer of this role is entity that is mistreated.</obo:IAO_0000600>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">abused person role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000310 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000310">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes some investigation of biospecimens.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">directive about research of biospecimens</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000311 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000311">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that involves the investigation of some sequence of DNA.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">act of genetic testing</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000312 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000312">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/prescribes"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ICO_0000311"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes some act of genetic testing.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">genetic testing directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000313 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000313">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in some material entity that is realized in an act of artifact modification where the material entity is separated from another portion of material.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte, Elizabeth Umberfield</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">excess material role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000314 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000314">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
<obo:IAO_0000115 xml:lang="en">An objective specification whose intended process endpoint is an investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">investigation objective specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000315 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000315">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
<obo:IAO_0000115 xml:lang="en">An objective specification that prescribes the participation of an information content entity or a material entity in a process prescirbed by a future invesitgation objective specification.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">"The use in research of information or human biological materials originally collected for a purpose other than the current research purpose."</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Adapted from: “Secondary Use of Data - FAQs - Research Ethics Office - Sunnybrook Research Institute.” [Online]. Available: https://sunnybrook.ca/research/content/?page=sri-crs-reo-faq-secondaryusedata. [Accessed: 07-Nov-2018].</obo:IAO_0000119>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">secondary use objective specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000316 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000316">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/prescribes"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes some role.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">role directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000317 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000317">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000316"/>
<obo:IAO_0000115 xml:lang="en">A role directive that prescribes the bearer of a patient role in a process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">patient role directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000318 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000318">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000316"/>
<obo:IAO_0000115 xml:lang="en">A role directive that prescirbes the bearer of a regulatory oversight role in a process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">regulatory oversight role directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000319 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000319">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000316"/>
<obo:IAO_0000115 xml:lang="en">A role directive that prescribes the bearer of an investigator role in a process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">investigator role directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000320 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000320">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000316"/>
<obo:IAO_0000115 xml:lang="en">A role directive that prescribes the bearer of a legally authorized representative role in process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury</obo:IAO_0000117>
<obo:ICO_0000321 xml:lang="en"></obo:ICO_0000321>
<rdfs:label xml:lang="en">legally authorized representative role directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000322 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000322">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000244"/>
<obo:IAO_0000115 xml:lang="en">A 'permission directive' that prescribes some action that is made allowable by a consenting entity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) We indend instances of 'consent directive' to be stated positively with repect to the act of permitting. A 'consent directive' may only allow for different actions, not forbid them. However, since 'consent directives' may simultaneously create new duties or obligations, we define 'designated consent condition' in order to help manage these nested deontic statements.
(2) Another, less formal definition: 'A statement that guides action that is made allowable by a consenting entity, where that action is otherwise impermissible.'
(3) The definition from HL7: "The legal record of a healthcare consumer's agreement with a party responsible for enforcing the consumer’s choices, which permits or denies identified actors or roles to perform actions affecting the consumer within a given context for specific purposes and periods of time." https://www.hl7.org/fhir/consent.html</rdfs:comment>
<rdfs:label xml:lang="en">consent directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000323 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000323">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000244"/>
<obo:IAO_0000115 xml:lang="en">A 'permission directive' that prescribes some action that is made allowable by an assenting entity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) We indend instances of 'assent directive' to be stated positively with repect to the act of permitting. A 'assent directive' may only allow for different actions, not forbid them. However, since 'assent directives' may simultaneously create new duties or obligations, we define 'designated consent condition' in order to help manage these nested deontic statements.</rdfs:comment>
<rdfs:label xml:lang="en">assent directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000324 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000324">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A 'Directive Information Content Entity' that designates a process as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) It is critical that these classes not be mistaken for processes themselves. If you intend to build logical axioms within the BFO framework it will be necessary to create realtions between instances of 'designated actions' and 'processes.' We leave this mapping undone in order to accomodate various non-BFO process value sets.
(2) We believe it is important to separate 'processes' from their inputs, outputs, or participants in action designatation. For example: instead of a 'designated process of blood extraction' we would advocate for creation of a designated action such as 'designated process of extraction' so that this class may also be used with different objects, like teeth. This is of course, application dependent. This is only a guide.
(3) It is our intent that all instances of 'designated actions' that are related to instances of 'permission directive' be processes or events in which deontic roles of some kind may be realized. Stated another way, a 'designated action' should be an action that is not allowable unless a process makes it so: for example, a 'process of informed consent' with a subprocess 'act of permitting.'</rdfs:comment>
<rdfs:label xml:lang="en">designated action</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000325 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000325">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A 'Designative Information Content Entity' that designates an entity which can bear deontic roles.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) In the general sense, 'designated actors' should designate entities which perform, or participate in an action. While the notion of 'agency' is important for some entiites, at some times, involved in processes of informed consent, we do not define actors in terms of their agency.
(2) Within the greater BFO, D-acts, and ICO frameworks, we believe that a 'designated actor' has some capability to bear deontic roles.</rdfs:comment>
<rdfs:label xml:lang="en">designated actor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000326 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000326">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity"/>
<obo:IAO_0000115 xml:lang="en">A 'Designative Information Content Entity' that designates the object of a 'designated action'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) In English, this is typically the 'object' of the clause where the 'designated action' is the verb. We may also refer to this as the 'designated target' of the action. However, we choose 'object' to more clearly separate the objects of the actions from the ends.</rdfs:comment>
<rdfs:label xml:lang="en">designated object</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000327 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000327">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A 'directive information entity' that directs the conditions of 'allowability' for a 'consent directive'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) A 'designated consent condition' defines or delimits the scope, boundaries, requirements, attributes, antecendents, or limitations the 'designated action' which may be permitted. As such, it is specifically tied to permissions to avoid complex nested impertives as much as possible. The central question to ask is: 'what does permission to undertake this action depend on?'
(2) Our intent is to focus on conditionals related to 'obtaining permission' rather than all possible conditionals.</rdfs:comment>
<rdfs:label xml:lang="en">permission condition directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000328 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000328">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000357"/>
<obo:IAO_0000115 xml:lang="en">A 'permission condition directive' that directs the purpose for a 'permission directive'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">purpose: https://www.merriam-webster.com/dictionary/purpose
(1) to propose as an aim to oneself
'means to an end': https://www.merriam-webster.com/dictionary/a%20means%20to%20an%20end
(1) something done only to produce a desired result</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) We refer to 'designated purpose' as the specific end, outcome, or target of some designated action. We note that this necessarily involves the notion of 'intentionality.' Because this may be regarded as problematic in a realist ontology, please tread with caution.</rdfs:comment>
<rdfs:label xml:lang="en">permission purpose directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000329 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000329">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of access as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">access: https://www.merriam-webster.com/dictionary/access
(1) to get at
(2) to gain access to
(3) to be able to use, enter, or get near (something)
(4) to open or load (a computer file, an Internet site, etc.)
(5) permission, liberty, or ability to enter, approach, or pass to and from a place or to approach or communicate with a person or thing
(6) freedom or ability to obtain or make use of something</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) Access is a complex issue. We intend this class to cover instances whereby an entity may gain the ability to act upon an object whereby they previously were not able to do so. Examples may include: accessing PHI in a database, linking sensitive information to a biospecimen repository, ect.</rdfs:comment>
<rdfs:label xml:lang="en">designated process of access</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000330 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000330">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of analysis as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">analyze: https://www.merriam-webster.com/dictionary/collect
(1) to study or determine the nature and relationship of the parts of (something) by analysis</obo:ICO_0000420>
<rdfs:label xml:lang="en">designated process of analysis</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000331 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000331">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a procedure as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) It is our intent for this term to serve as a blanket class for all types of clinical procedures. If an application demands specificity of procedures, for example administration of anesthetic, this would be a good parent class for such a list or subtree of procedures.</rdfs:comment>
<rdfs:label xml:lang="en">designated procedure</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000332 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000332">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of collection as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">collect: https://www.merriam-webster.com/dictionary/collect
(1) to bring together into one body or place
(2) to gather or exact from a number of persons or sources
(3) to gain or regain control of</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) It is our intent that this class includes instances of collection of material and of information. We note that the actual processes of 'retention' (read: 'storage') and 'collection' may be ambigously differentiated.
(2) We intend this class to primarily cover de novo collection.</rdfs:comment>
<rdfs:label xml:lang="en">designated process of collection</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000333 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000333">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of destruction as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">destroy: https://www.merriam-webster.com/dictionary/destroy
(1) to put out of existence</obo:ICO_0000420>
<rdfs:label xml:lang="en">designated process of destruction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000334 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000334">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of disclosure as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">disclose: https://www.merriam-webster.com/dictionary/disclose
(1) to make known or public
(2) to expose to view</obo:ICO_0000420>
<rdfs:label xml:lang="en">designated process of disclosure</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000335 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000335">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of duplication as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">duplicate: https://www.merriam-webster.com/dictionary/duplicate
(1) to make double or twofold
(2) to make a copy of</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) We intend this designation to include processes of 'copying.'</rdfs:comment>
<rdfs:label xml:lang="en">designated process of duplication</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000336 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000336">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process unspecified use as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">'use'
(1) to put into action or service
(2) to carry out a purpose or action by means of</obo:ICO_0000420>
<obo:ICO_0000420 xml:lang="en">unspecified: https://www.merriam-webster.com/dictionary/unspecified
(1) not named or stated explicitly</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) this is a 'catch-all' bucket to define those 'designated action'(s) that are not explicit.
(2) does this require a 'designated purpose' specification? (this is boarderline rule enforcement that may be appropriate at implmentation, but not here).</rdfs:comment>
<rdfs:label xml:lang="en">designated process of unspecified use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000337 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000337">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of modifcation as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">modify: https://www.merriam-webster.com/dictionary/modify
(1) to make basic or fundamental changes in often to give a new orientation to or to serve a new end</obo:ICO_0000420>
<rdfs:label xml:lang="en">designated process of modification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000338 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000338">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of contact permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This includes instances of recontact.</rdfs:comment>
<rdfs:label xml:lang="en">designated process of contact</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000339 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000339">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of retention as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">retain: https://www.merriam-webster.com/dictionary/retain
(1) to keep in possession or use
(2) to keep in one's pay or service
(3) to hold secure or intact</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) these may often be accompanied by a 'designated temporal conditon'.
(2) if these are do not follow (1), they may be more approproately labeled 'stases' instead of 'process.'
(3) we believe this includes storage, should it be re-labeled 'storage?'</rdfs:comment>
<rdfs:label xml:lang="en">designated process of retention</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000340 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000340">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of sharing permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">share: https://www.merriam-webster.com/dictionary/share
(1) to partake of, use, experience, occupy, or enjoy with others</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) this, along with 'transfer' need to be properly fleshed out. Perhaps the difference is 'ownership.' When you share, you may retain the right to ownership, but when you transfer, you yield this right....
(2) does sharing including publishing PHI? De-anonymizing?
(3) what about 'release?'</rdfs:comment>
<rdfs:label xml:lang="en">designated process of sharing</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000341 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000341">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of study as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) require link to a 'Descriptive Information Content Entity' like: 'STUDY DETAILS?'
(2) STUDY PRTICIPATION</rdfs:comment>
<rdfs:label xml:lang="en">designated process of study</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000342 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000342">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of surveillance.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">surveil: https://www.merriam-webster.com/dictionary/surveil
(1) to subject to surveillance</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) our usage more closely resembles the use in NCIT.</rdfs:comment>
<rdfs:label>designated process of surveillance</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000343 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000343">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of transferral of ownership permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">transfer: https://www.merriam-webster.com/dictionary/transfer
(1) to convey from one person, place, or situation to another
(2) to make over the possession or control of
(3) to move to a different place, region, or situation</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) is collection a tranfer of ownership?</rdfs:comment>
<rdfs:label xml:lang="en">designated process of transfer</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000344 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000344">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a research process as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This is a pointer to ADAM Matrix.
(2) covers future</rdfs:comment>
<rdfs:label xml:lang="en">designated research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000345 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000345">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000344"/>
<obo:IAO_0000115 xml:lang="en">A 'designated research purpose' that designates a biomedical research process as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated biomedical research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000346 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000346">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000345"/>
<obo:IAO_0000115 xml:lang="en">A 'designated research purpose' that designates a process of genetic research as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated genetic research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000347 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000347">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a process relating to the management of an organization as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<obo:ICO_0000420 xml:lang="en">administrative: https://www.merriam-webster.com/dictionary/administrative
(1) relating to the management of a company, school, or other organization
administrative tasks/duties/responsibilities</obo:ICO_0000420>
<rdfs:comment xml:lang="en">(1) actions undertaken support system processing</rdfs:comment>
<rdfs:label xml:lang="en">designated administrative purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000348 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000348">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a process of diagnosis as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) related to, but perhaps not limited to the following classes in OGMS:
(2) diagnosis (http://purl.obolibrary.org/obo/OGMS_0000073)
(3) diagnostic process (http://purl.obolibrary.org/obo/OGMS_0000104)</rdfs:comment>
<rdfs:label xml:lang="en">designated diagnostic purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000349 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000349">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates an educational process as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated educational purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000350 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000350">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a process of evaluation as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated evaluation purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000351 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000351">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/ICO_0000353"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a for-profit activity as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated commercial purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000352 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000352">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a healthcare operation process as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) quality and safety purposes</rdfs:comment>
<rdfs:label xml:lang="en">designated healthcare operation purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000353 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000353">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a nonprofit activity as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated non-commercial purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000354 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000354">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a process related to healing a disease as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated therapeutic purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000355 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000355">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates an unspecified process as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated unspecified purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000356 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000356">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000327"/>
<obo:IAO_0000115 xml:lang="en">A 'permission condition directive' which states a preceding event or condition.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) 'antecedent'
(2) may need to specific 'post-cendents' also.</rdfs:comment>
<rdfs:label xml:lang="en">permission precondition</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000357 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000357">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000327"/>
<obo:IAO_0000115 xml:lang="en">A 'permission requirement directive' that directs a 'permissable' limit of a 'consent directive'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) Restrictions narrow the scope of the 'designated action'. They operate on the 'allowability' conditionally.
(2) "Allowable IF NOT <'designated restriction'>"
(3) Alternatively: 'A LIMIT ON THE SCOPE OF THE ACTION'
(4) up until the point of.
(5) RESTRAINNING</rdfs:comment>
<rdfs:label xml:lang="en">permission restriction directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000359 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000359">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000357"/>
<obo:IAO_0000115 xml:lang="en">A 'permission restriction directive' that designates an actor.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">permitted actor restriction directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000360 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000360">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000357"/>
<obo:IAO_0000115 xml:lang="en">A 'permission restriction directive' that defines the spatial boundaries of a 'designated action'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) 'Jurisdiction' is often defined in two senses: (1) a geopolitical context (BFO site), or (2) a power. We define jurisdiction as a BFO site, identifiable through shared context of other entities, like a country or state border. The term ‘deontic power role’ reflects the sense of ‘power’ sometimes used to describe jurisdiction.</rdfs:comment>
<rdfs:label xml:lang="en">jurisdiction restriction directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000363 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000363">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000357"/>
<obo:IAO_0000115 xml:lang="en">A 'permission restriction directive' that designates the temporal boundaries of the 'designated action'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">temporal restriction directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000364 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000364">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000327"/>
<obo:IAO_0000115 xml:lang="en">A 'permission condition directive' that states an additional requirement.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) NOTE: this is an imperitive - it is not strictly part of a permission but is inextricably tied to it.
(2) these are obligations that are dependent on a permission (conditioned on a permission)
(3) MUST BE FULLFILLED
(4) allowability is necessarily dependent on this being fulfilled</rdfs:comment>
<rdfs:label xml:lang="en">permission requirement directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000365 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000365">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000327"/>
<obo:IAO_0000115 xml:lang="en">A 'permission condition directive' that directs another 'consent directive' as a requirement of a primary 'consent directive'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This permission is dependent on another permission
(2) a good example of this are data use agreements that must be signed in addition to an informed consent form to allow for PHI data sharingor disclosure.</rdfs:comment>
<rdfs:label xml:lang="en">permission sub-directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000366 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000366">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000364"/>
<obo:IAO_0000115 xml:lang="en">A 'permission requirement directive' that directs the possibility of withdraw.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) typically from 'study participation.'</rdfs:comment>
<rdfs:label xml:lang="en">possibility of withdraw directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000367 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000367">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000326"/>
<obo:IAO_0000115 xml:lang="en">A 'designated object' that designates data or information.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This is really saying that this is information that designates other information content entities (in BFO-speak).</rdfs:comment>
<rdfs:comment xml:lang="en">See: http://purl.obolibrary.org/obo/IAO_0000030</rdfs:comment>
<rdfs:label xml:lang="en">designated data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000368 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000368">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000367"/>
<obo:IAO_0000115 xml:lang="en">A 'designated data' that designates waveform data.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated waveform data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000369 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000369">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000367"/>
<obo:IAO_0000115 xml:lang="en">A 'designated data' that designates genetic data.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated genetic data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000370 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000370">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000367"/>
<obo:IAO_0000115 xml:lang="en">A 'designated data' that designates data about health.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated health information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000371 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000371">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000367"/>
<obo:IAO_0000115 xml:lang="en">A 'designated data' that designates information that may identify an entity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) How broad is this notion of 'entity' here?
(2) NOTE: this not nested under 'designated health information' because information does not need to be health information to be identifiable.
(3) HIPAA Identifiers
(4) Includes fully and partially identifiable information.</rdfs:comment>
<rdfs:label xml:lang="en">designated identifiable information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000372 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000372">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000367"/>
<obo:IAO_0000115 xml:lang="en">A 'designated data' that designates image data.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated image data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000373 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000373">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000367"/>
<obo:IAO_0000115 xml:lang="en">A 'designated data' that designates video data.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated video data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000374 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000374">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000326"/>
<obo:IAO_0000115 xml:lang="en">A 'designated object' that designates a person, or part of a person, as the target of a 'designated action.'</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) for when the permitting party is the target of the 'designated action'
(2) you may operate on my leg
(3) this includes 'study participant' as the target of an action. May also include patient.</rdfs:comment>
<rdfs:label xml:lang="en">designated human object</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000375 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000375">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000326"/>
<obo:IAO_0000115 xml:lang="en">A 'designated object' that designates a biospecimen.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) this should be mapped to robust specimen heirarchies such as: http://purl.obolibrary.org/obo/OBI_0100051</rdfs:comment>
<rdfs:comment xml:lang="en">A 'designated object' that designates a specimen.</rdfs:comment>
<rdfs:label xml:lang="en">designated biospecimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000376 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000376">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000375"/>
<obo:IAO_0000115 xml:lang="en">A 'designated biospecimen' that designates a portion of excess tissue.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated residual tissue</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000377 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000377">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000326"/>
<obo:IAO_0000115 xml:lang="en">A 'designated object' that designates an unspecified object.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated unspecified object</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000378 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000378">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates an actor that may bear a permission role that may be realized in the process prescribed by the process designated by the 'designated action.'</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This designation points towards deontic roles and social processes.
(2) This can be read as: 'the actor TO BE permitted.' It is not intended to create a permission the same way the creation of an ICO:permission role might. However, we leave this somewhat open to implementation interpretation.</rdfs:comment>
<rdfs:label xml:lang="en">designated permitted actor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000379 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000379">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates an actor with an affilitation to an organization or institution.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) actor with a designated affiliation to an organization/institution.
(2) intended for single individuals rather than groups, but as a way to relate groups and actors performing on the group's behalf.</rdfs:comment>
<rdfs:label xml:lang="en">designated affiliated actor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000380 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000380">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates a corporation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated corporation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000381 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000381">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates an institution.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) established organization
(2) an entity that has independent financial, legal, interests or identity.</rdfs:comment>
<rdfs:label xml:lang="en">designated institution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000382 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000382">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates a principal investigator.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated principal investigator</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000383 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000383">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates an information system.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated information system actor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000384 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000384">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates an organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) where does surgical team fit in?
(2) how do we define aggregates of people?
(3) possible mapping to (OBI: organization) http://purl.obolibrary.org/obo/OBI_0000245</rdfs:comment>
<rdfs:label xml:lang="en">designated organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000385 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000385">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that desginates an educational organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated educational organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000386 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000386">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates a biobank organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated biobank organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000387 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000387">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates a for-profit organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated for-profit organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000388 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000388">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates a funding organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated funding organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000389 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000389">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates a government organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated government organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000390 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000390">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates a healthcare organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated healthcare organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000391 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000391">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates a regulatory organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated regulatory organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000392 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000392">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates a media organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated media organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000393 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000393">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designated a non-profit organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated non-profit organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000394 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000394">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates a public health organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) groups that may have the ability to override specific norms?</rdfs:comment>
<rdfs:label xml:lang="en">designated public health organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000395 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000395">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that desginates a research organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated research organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000396 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000396">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates a team.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) this is useful in defining things like 'research team' or 'clinical team.'</rdfs:comment>
<rdfs:label xml:lang="en">designated team</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000397 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000397">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000384"/>
<obo:IAO_0000115 xml:lang="en">A 'designated organization' that designates an unspecified organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated unspecified organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000398 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000398">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates an actor that may permit some 'designated action'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This designation points towards deontic roles and social processes.</rdfs:comment>
<rdfs:label xml:lang="en">designated permitting actor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000399 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000399">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates the entity that is permitting some 'designated action'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) not to be confused with 'designated consenting actor'.
(2) this definition is currently the same as the definition for 'designated consenting actor'. We need to remedy this without appealing to U.S. specific legislative definitions.</rdfs:comment>
<rdfs:label xml:lang="en">designated assenting actor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000400 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000400">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates the actor that is permitting some 'designated action'.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) Not to be confused with 'designed assenting actor'
(2) By 'permitting' we mean 'making the otherwise impermissable action permissable' or 'making allowable.'</rdfs:comment>
<rdfs:label xml:lang="en">designated consenting actor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000401 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000401">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates an authorized representative.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) legally authorized representative (LAR): has the ability to act on behalf of another person (under the rule of law).
(2) not sure if this should be under the 'designated permitting actor'.
(3) surrogates are included here.</rdfs:comment>
<rdfs:label xml:lang="en">designated authorized representative</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000403 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000403">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000325"/>
<obo:IAO_0000115 xml:lang="en">A 'designated actor' that designates an unspecified actor.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated unspecified actor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000405 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000405">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000344"/>
<obo:IAO_0000115 xml:lang="en">A 'designated research purpose' that designates a health services research process as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated health services research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000406 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000406">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000344"/>
<obo:IAO_0000115 xml:lang="en">A 'designated research purpose' that designates a process of methods development research as it's end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated methods development purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000407 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000407">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000344"/>
<obo:IAO_0000115 xml:lang="en">A 'designated research purpose' that designates reference control material research processes as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated control material research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000408 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000408">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000344"/>
<obo:IAO_0000115 xml:lang="en">A 'designated research purpose' that designates a process of population research as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated populations research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000409 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000409">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000344"/>
<obo:IAO_0000115 xml:lang="en">A 'designated research purpose' that designates ancestry research as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated ancestry research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000410 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000410">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000345"/>
<obo:IAO_0000115 xml:lang="en">A 'designated biomedical research purpose' that designates a process of drug research as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated drug research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000411 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000411">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000345"/>
<obo:IAO_0000115 xml:lang="en">A 'designated biomedical research purpose' that designates a process of disease specific research as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated disease research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000412 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000412">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000345"/>
<obo:IAO_0000115 xml:lang="en">A 'designated biomedical research purpose' that designates a process of age category research as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated age category research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000413 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000413">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000345"/>
<obo:IAO_0000115 xml:lang="en">A 'designated biomedical research purpose' that designates a process of gender category research as its end.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:label xml:lang="en">designated gender research purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000414 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000414">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process of administration as permissable.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This class is intended for actions such as 'drug administration.'</rdfs:comment>
<rdfs:label xml:lang="en">designated process of administration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000415 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000415">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000326"/>
<obo:IAO_0000115 xml:lang="en">A 'designated object' that designates a pharmaceutical object</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated pharmaceutical object</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000416 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000416">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a process of recruitment.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:label xml:lang="en">designated recruitment purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000417 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000417">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000328"/>
<obo:IAO_0000115 xml:lang="en">A 'permission purpose directive' that designates a return of results.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This is intended to cover communication from a healthcare organization to a patient or study participant regarding their health.</rdfs:comment>
<rdfs:label xml:lang="en">designated return of results purpose</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000418 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000418">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000364"/>
<obo:IAO_0000115 xml:lang="en">A 'permission requirement directive' that directs sensitive infotmation proctection.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<obo:ICO_0000404 xml:lang="en"></obo:ICO_0000404>
<rdfs:comment xml:lang="en">(1) This definition is left purposefully broad to cover a wide range of use cases including processes or methods.</rdfs:comment>
<rdfs:label xml:lang="en">sensitive information protection directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000419 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000419">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000324"/>
<obo:IAO_0000115 xml:lang="en">A 'designated action' that designates a process fo treament.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield, Kathleen Ford, Marcy Harris</obo:IAO_0000117>
<rdfs:comment xml:lang="en">(1) consent to treat</rdfs:comment>
<rdfs:label xml:lang="en">designated process of treatment</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000421 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000421">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which data is put to some use by an entity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Cooper Stansbury, Elizabeth Umberfield</obo:IAO_0000117>
<rdfs:label xml:lang="en">act of data use</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000422 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000422">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000093"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<obo:IAO_0000115 xml:lang="en">An agent who bears a patient role.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">J. Neil Otte</obo:IAO_0000117>
<rdfs:label xml:lang="en">patient</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000423 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000423">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which goods or services are exachanged for money.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Umberfield, Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">https://www.merriam-webster.com/dictionary/sell</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">From definition of 'sell' from Merriam-Webster: To give up (property) to another for something of value (such as money).'</obo:IAO_0000232>
<rdfs:label xml:lang="en">act of selling</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000424 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000424">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role based on the Health Insurance Portability and Accountability Act that inheres in individuals, organizations, and agencies that are also health care providers, health plans, or health care clearinghouse.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Umberfield, Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Adapted from HIPAA.</obo:IAO_0000232>
<rdfs:label xml:lang="en">covered entity role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000425 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000425">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role which is realized in processes of data disclosure.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Umberfield, Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Definition from adapted from GDPR Article 4(9): A natural or legal person, public authority, agency or another body, to which the data are disclosed.</obo:IAO_0000232>
<rdfs:label xml:lang="en">data recipient role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000426 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000426">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000103"/>
<obo:IAO_0000115 xml:lang="en">Protected health information that excludes HIPAA-specified identifiers of the individual or of relatives, employers, or household members of the individual.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Umberfield, Cooper Stansbury</obo:IAO_0000117>
<obo:IAO_0000232 xml:lang="en">Definition adapted from HIPAA.</obo:IAO_0000232>
<rdfs:label xml:lang="en">limited data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000427 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000427">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that prescribes the owner role.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Umberfield, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">owner role directive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000428 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000428">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/Stasis"/>
<obo:IAO_0000115 xml:lang="en">A stasis in which an entity bears an ownership role.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Umberfield, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">ownership statis</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ICO_0000429 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ICO_0000429">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 xml:lang="en">A material entity, collected during some health care process, that bears both a specimen role and an excess material role following some act of artifact modification.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Elizabeth Umberfield, Cooper Stansbury</obo:IAO_0000117>
<rdfs:label xml:lang="en">residual clinical biospecimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000115>A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism.</obo:IAO_0000115>
<oboInOwl:hasDbXref>DOID:4</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>EFO:0000408</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ICD10:N18</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ICD9:799.9</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MESH:D004194</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>NCIT:C2991</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>OGMS:0000031</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>Orphanet:377788</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SCTID:64572001</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UMLS:C0012634</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>condition</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease or disorder, non-neoplastic</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>diseases</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>diseases and disorders</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disorders</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>medical condition</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>other disease</oboInOwl:hasExactSynonym>
<oboInOwl:id>MONDO:0000001</oboInOwl:id>
<rdfs:label>disease or disorder</rdfs:label>
<skos:exactMatch rdf:resource="http://identifiers.org/mesh/D004194"/>
<skos:exactMatch rdf:resource="http://identifiers.org/snomedct/64572001"/>
<skos:exactMatch rdf:resource="http://linkedlifedata.com/resource/umls/id/C0012634"/>
<skos:exactMatch rdf:resource="http://purl.obolibrary.org/obo/DOID_4"/>
<skos:exactMatch rdf:resource="http://purl.obolibrary.org/obo/NCIT_C2991"/>
<skos:exactMatch rdf:resource="http://www.orpha.net/ORDO/Orphanet_377788"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_10239 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<obo:IAO_0000111>Viruses</obo:IAO_0000111>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Viruses</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_117571 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_117571">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7742"/>
<obo:IAO_0000111>Euteleostomi</obo:IAO_0000111>
<obo:IAO_0000118>bony vertebrates</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Euteleostomi</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_2 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<obo:IAO_0000111>Bacteria</obo:IAO_0000111>
<obo:IAO_0000118>eubacteria</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Bacteria</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_2157 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2157">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<obo:IAO_0000111>Archaea</obo:IAO_0000111>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Archaea</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_2759 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<obo:IAO_0000111>Eukaryota</obo:IAO_0000111>
<obo:IAO_0000118>eucaryotes</obo:IAO_0000118>
<obo:IAO_0000118>eukaryotes</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Eukaryota</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_314146 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_314146">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/>
<obo:IAO_0000111>Euarchontoglires</obo:IAO_0000111>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Euarchontoglires</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_32523 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_32523">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_117571"/>
<obo:IAO_0000111>Tetrapoda</obo:IAO_0000111>
<obo:IAO_0000118>tetrapods</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Tetrapoda</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_32524 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_32524">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32523"/>
<obo:IAO_0000111>Amniota</obo:IAO_0000111>
<obo:IAO_0000118>amniotes</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Amniota</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_33154 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33154">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<obo:IAO_0000111>Opisthokonta</obo:IAO_0000111>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Opisthokonta</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_33208 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33208">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33154"/>
<obo:IAO_0000111>Metazoa</obo:IAO_0000111>
<obo:IAO_0000118>metazoans</obo:IAO_0000118>
<obo:IAO_0000118>multicellular animals</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Metazoa</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_33213 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33213">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33208"/>
<obo:IAO_0000111>Bilateria</obo:IAO_0000111>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Bilateria</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_40674 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_40674">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32524"/>
<obo:IAO_0000111>Mammalia</obo:IAO_0000111>
<obo:IAO_0000118>mammals</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Mammalia</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_7742 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_7742">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33213"/>
<obo:IAO_0000111>Vertebrata <vertebrates></obo:IAO_0000111>
<obo:IAO_0000118>Vertebrata</obo:IAO_0000118>
<obo:IAO_0000118>vertebrates</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Vertebrata <vertebrates></rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9606 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000220"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_314146"/>
<obo:IAO_0000111>Homo sapiens</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">Homo sapiens</obo:IAO_0000111>
<obo:IAO_0000118>human</obo:IAO_0000118>
<obo:IAO_0000118>human being</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>Homo sapiens</rdfs:label>
<rdfs:label xml:lang="en">Homo sapiens</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCIT_C70800 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCIT_C70800">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000115>A document containing the determination of the Institutional Review Board (IRB) that the clinical study with human subject participation has been reviewed and may be conducted at a particular study site within the constraints set forth by the IRB and other institutional and federal requirements. The regulations require that an IRB conduct continuing review of research at intervals appropriate to the degree of risk, but not less than once a year.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncit.owl"/>
<obo:NCIT_NHC0>C70800</obo:NCIT_NHC0>
<obo:NCIT_P106>Regulation or Law</obo:NCIT_P106>
<obo:NCIT_P108>Institutional Review Board Approval</obo:NCIT_P108>
<obo:NCIT_P207>C2346499</obo:NCIT_P207>
<obo:NCIT_P322>CDISC-GLOSS</obo:NCIT_P322>
<obo:NCIT_P322>CareLex</obo:NCIT_P322>
<obo:NCIT_P325>Study Site specific document containing the determination of the Institutional Review Board (IRB) or Independent Ethics Committee (IEC) that the clinical study with human subject participation has been reviewed and may be conducted at a particular study site within the constraints set forth by the IRB and other institutional and federal requirements. [NCI]</obo:NCIT_P325>
<obo:NCIT_P325>The affirmative decision of the IRB that the clinical trial has been reviewed and may be conducted at the institution site within the constraints set forth by the IRB, the institution, good clinical practice (GCP), and the applicable regulatory requirements. [ICH E6]</obo:NCIT_P325>
<obo:NCIT_P366>Institutional_Review_Board_Approval</obo:NCIT_P366>
<oboInOwl:hasExactSynonym>IRB Approval</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>IRB-IEC Approv</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>IRB-IEC Approval</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>IRB/IEC Submission Approval</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Institutional Review Board Approval</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Institutional Review Board Independent Ethics Committee Approval</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>approval (in relation to Institutional Review Boards)</oboInOwl:hasExactSynonym>
<oboInOwl:inSubset rdf:resource="http://purl.oboInOwllibrary.org/oboInOwl/NCIT_C114548"/>
<oboInOwl:inSubset rdf:resource="http://purl.oboInOwllibrary.org/oboInOwl/NCIT_C61410"/>
<oboInOwl:inSubset rdf:resource="http://purl.oboInOwllibrary.org/oboInOwl/NCIT_C67497"/>
<rdfs:label>Institutional Review Board Approval</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCIT_C85521 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCIT_C85521">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>The state of being confined to jail or prison.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncit.owl"/>
<obo:NCIT_NHC0>C85521</obo:NCIT_NHC0>
<obo:NCIT_P106>Activity</obo:NCIT_P106>
<obo:NCIT_P108>Incarceration</obo:NCIT_P108>
<obo:NCIT_P207>C0205255</obo:NCIT_P207>
<obo:NCIT_P322>CDISC</obo:NCIT_P322>
<obo:NCIT_P325>The state of being confined to jail or prison.</obo:NCIT_P325>
<oboInOwl:hasExactSynonym>INCARCERATION</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Incarceration</oboInOwl:hasExactSynonym>
<oboInOwl:inSubset rdf:resource="http://purl.oboInOwllibrary.org/oboInOwl/NCIT_C102587"/>
<oboInOwl:inSubset rdf:resource="http://purl.oboInOwllibrary.org/oboInOwl/NCIT_C61410"/>
<oboInOwl:inSubset rdf:resource="http://purl.oboInOwllibrary.org/oboInOwl/NCIT_C66830"/>
<rdfs:label>Incarceration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OAE_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OAE_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000060"/>
<obo:IAO_0000115>a pathological bodily process that occurs after a medical intervention. An adverse event is likely caused by the medical intervention; however, such a causal association is not required to be an adverse event.</obo:IAO_0000115>
<obo:IAO_0000116>Melanie Courtot and YH: More work is needed on how to restrict the scope of a term to be an 'adverse event', notably regarding temporal association. When is an appropirate time interval between a medical intervention and an adverse event observed? One week, one month, one year, or a lifetime? For some well-studied medical interventions (e.g., administration of many vaccines or drugs), we probably have a general idea. For many new interventions, we don't know much. In OAE, this issue is associated with defining the 'adverse event incubation time'.</obo:IAO_0000116>
<obo:IAO_0000116>YH: An adverse event is a process that has specified output of some adverse medical outcome (e.g., symptom, sign or accident) after a medical intervention (or process) (e.g., administration of drug or vaccine). The medical intervention can be an administration of a drug, a vaccine (i.e., vaccination), or a special nutritional product (for example, dietary supplement, infant formula, medical food), surgery, or usage of a medical device.</obo:IAO_0000116>
<obo:IAO_0000116>YH: An adverse event is possibly induced by the medical intervention. It can be caused by the medical intervention, or may not be caused by the medical intervention. One ultimate goal (or the goal in clinics) of study adverse events is to assess if the adverse event outcome is due to the medical intervention.</obo:IAO_0000116>
<obo:IAO_0000116>YH: In development of OAE, we initially use vaccine adverse event as our use case. A vaccine adverse event is associated with a vaccination (i.e. a medical intervention), regardless of whether it is considered vaccine-related, and includes any side effect, injury, toxicity, or sensitivity reaction or significant failure of immunization (i.e., a pharmacologic action).
Ref: Baylor NW and Midthum K. Regulation and testing of vaccines. In: Vaccines (Editors: Plotkin S, Orenstein W, and Offit P). 2008. p1623.</obo:IAO_0000116>
<obo:IAO_0000116>YH: The current term 'adverse event' is different from the term definition shown in our paper: He Y, Xiang Z, Sarntivijai S, Toldo L, Ceusters W. OAE: a realism-based biomedical ontology for the representation of adverse events. Adverse Event Representation Workshop, International Conference on Biomedical Ontologies (ICBO), University at Buffalo, NY, July 26-30, 2011. Full lenghth conference proceeding paper.
We made the name changing in order to make OAE cover the broader sense of the 'adverse event' which does not assume definite causal effect between an adverse event and a medical intervention. In current definition, the adverse event emphasizes the time association and assumes a likelihood of such a causal association. This term 'adverse event' is stil under the OGMS:pathological bodily process.
The 'adverse event' defined in the above paper has now been changed to a new term: 'causal adverse event'. See more information in the new publication: Yongqun He Y, Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Abra Guo, Shelley Zhang, Desikan Jagannathan, Luca Toldo, Cui Tao and Barry Smith. OAE: The Ontology of Adverse Events. Journal of Biomedical Semantics. 2014, 5:29 doi:10.1186/2041-1480-5-29. PMID: 25093068.PMCID: PMC4120740.</obo:IAO_0000116>
<obo:IAO_0000116>YH: The main scope of OAE includes: (1) represent terms and relations in the area of adverse events, (2) assess possible associations between an adverse event and a medical intervention, particularly, identify any causal effect of a medical intervention to an adverse event; and (2) understand the mechanism (including molecular mechanisms) of causal adverse events.</obo:IAO_0000116>
<obo:IAO_0000116>YH: There has been discussion regarding whether the term 'side effect' is an alternative term for 'adverse event'. In AERO, the term 'AERO:adverse event' represents a subset of those adverse events for which causality has been established. In OAE, an adverse event for which causality has been established is called 'causal adverse event'.</obo:IAO_0000116>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118>AE</obo:IAO_0000118>
<obo:IAO_0000118>adverse reaction</obo:IAO_0000118>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Adverse_event</obo:IAO_0000119>
<obo:IAO_0000119>WEB: http://www.fda.gov/Safety/MedWatch/HowToReport/ucm053087.htm</obo:IAO_0000119>
<obo:IAO_0000119>WEB: http://www.ncbi.nlm.nih.gov/pubmed/25093068</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/oae.owl"/>
<rdfs:comment>The OAE official website is: http://www.oae-ontology.org/.</rdfs:comment>
<rdfs:label>adverse event</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBIB_0000039 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBIB_0000039">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<obo:IAO_0000115>A blood specimen that is located on a blood spot card.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Jie Zheng, Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Penn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obib.owl"/>
<rdfs:comment>A specimen that located in a blood spot card via blood spotting process.</rdfs:comment>
<rdfs:label xml:lang="en">blood specimen on blood spot card</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBIB_0000623 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBIB_0000623">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">An organization bearing legal personality that owns or adminstrates a biobank.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">biobank juristic person</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obib.owl"/>
<rdfs:label xml:lang="en">biobank organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBIB_0000630 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBIB_0000630">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">An organization with a specific responsibility that is a part of a larger organization with a specific responsibility.</obo:IAO_0000115>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Department</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obib.owl"/>
<rdfs:label xml:lang="en">department</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBIB_0000702 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBIB_0000702">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000115 xml:lang="en">A document that contains information representing health-relevant qualities of a patient written in a chronological manner and that is primarily used for patient care in a clinical setting.</obo:IAO_0000115>
<obo:IAO_0000117>Martin Fransson</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obib.owl"/>
<rdfs:comment>It is a chronological written account of examination, treatment, medical history or complaints.</rdfs:comment>
<rdfs:comment>It is used interchangeably with health record and medical chart.
https://en.wikipedia.org/wiki/Medical_record</rdfs:comment>
<rdfs:label xml:lang="en">medical record</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000011">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000111>planned process</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">planned process</obo:IAO_0000111>
<obo:IAO_0000112>Injecting mice with a vaccine in order to test its efficacy</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A process that realizes a plan which is the concretization of a plan specification.</obo:IAO_0000115>
<obo:IAO_0000116>'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)</obo:IAO_0000116>
<obo:IAO_0000116>We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some
objectives is a planned process.</obo:IAO_0000116>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>branch derived</obo:IAO_0000119>
<obo:IAO_0000232>6/11/9: Edited at workshop. Used to include: is initiated by an agent</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">planned process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000014">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000017"/>
<obo:IAO_0000111>regulator role</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Fact sheet - Regulating the companies The role of the regulator. Ofwat is the economic regulator of the water and sewerage industry in England and Wales. http://www.ofwat.gov.uk/aptrix/ofwat/publish.nsf/Content/roleofregulator_factsheet170805</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a regulatory role involved with making and/or enforcing relevant legislation and governmental orders</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000118>regulator</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">regulator role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000111 xml:lang="en">regulatory role</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Regulatory agency, Ethics committee, Approval letter; example: Browse these EPA Regulatory Role subtopics http://www.epa.gov/ebtpages/enviregulatoryrole.html Feb 29, 2008</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">GROUP: Role branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI, CDISC</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">govt agents responsible for creating regulations; proxies for enforcing regulations. CDISC definition: regulatory authorities. Bodies having the power to regulate. NOTE: In the ICH GCP guideline the term includes the authorities that review submitted clinical data and those that conduct inspections. These bodies are sometimes referred to as competent</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">regulatory role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000047">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111 xml:lang="en">processed material</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Is a material entity that is created or changed during material processing.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">processed material</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000066 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000066">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000572"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000338"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000471"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000339"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0500000"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">investigation</obo:IAO_0000111>
<obo:IAO_0000112>Lung cancer investigation using expression profiling, a stem cell transplant investigation, biobanking is not an investigation, though it may be part of an investigation</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000232>Could add specific objective specification</obo:IAO_0000232>
<obo:IAO_0000232 xml:lang="en">Following OBI call November 2012,26th: it was decided there was no need for adding "achieves objective of drawing conclusion" as existing relations were providing equivalent ability. this note closes the issue and validates the class definition to be part of the OBI core
editor = PRS</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:OBI_0001847>study</obo:OBI_0001847>
<rdfs:label xml:lang="en">investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000079 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000079">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<obo:IAO_0000111>culture medium</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">A growth medium or culture medium is a substance in which microorganisms or cells can grow. Wikipedia, growth medium, Feb 29, 2008</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">a processed material that provides the needed nourishment for microorganisms or cells grown in vitro.</obo:IAO_0000115>
<obo:IAO_0000116>changed from a role to a processed material based on on Aug 22, 2011 dev call. Details see the tracker item: http://sourceforge.net/tracker/?func=detail&aid=3325270&group_id=177891&atid=886178
Modification made by JZ.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person: Jennifer Fostel, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">culture medium</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000086 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000086">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003610"/>
<obo:IAO_0000111>reagent role</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Buffer, dye, a catalyst, a solvating agent.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in a biological or chemical entity that is intended to be applied in a scientific technique to participate (or have molecular components that participate) in a chemical reaction that facilitates the generation of data about some entity distinct from the bearer, or the generation of some specified material output distinct from the bearer.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Matthew Brush</obo:IAO_0000117>
<obo:IAO_0000118>reagent</obo:IAO_0000118>
<obo:IAO_0000119>PERSON:Matthew Brush</obo:IAO_0000119>
<obo:IAO_0000232>Feb 10, 2009. changes after discussion at OBI Consortium Workshop Feb 2-6, 2009. accepted as core term.
May 28 2013. Updated definition taken from ReO based on discussions initiated in Philly 2011 workshop. Former defnition described a narrower view of reagents in chemistry that restricts bearers of the role to be chemical entities ("a role played by a molecular entity used to produce a chemical reaction to detect, measure, or produce other substances"). Updated definition allows for broader view of reagents in the domain of biomedical research to include larger materials that have parts that participate chemically in a molecular reaction or interaction.</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment>(copied from ReO)
Reagents are distinguished from instruments or devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, instruments do not participate in a chemical reaction/interaction during the technique.
Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance will realize only one of these roles in the execution of a given assay or technique. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated.
In regard to the statement that reagents are 'distinct' from the specified outputs of a technique, note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).</rdfs:comment>
<rdfs:label xml:lang="en">reagent role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000093 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000093">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>patient role</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">a hospitalized person; a person with controlled diabetes; the patient's role http://www.fertilityjourney.com/testingAndDiagnosis/theRightDoctor/thePatientsRole/index.asp?C=55245395146924652778</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a role which inheres in a person and is realized by the process of being under the care of a physician or health care provider</obo:IAO_0000115>
<obo:IAO_0000116>See also OMRSE:00000011 'patient role'</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">GROUP:Role Branch</obo:IAO_0000117>
<obo:IAO_0000118>patient</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI, CDISC</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">CDISC definition: patient. Person under a physician's care for a particular disease or condition. NOTE: A subject in a clinical trial is not necessarily a patient, but a patient in a clinical trial is a subject. See also subject, trial subject, healthy volunteer. Often used interchangeably</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">patient role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000094 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000094">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000456"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>material processing</obo:IAO_0000111>
<obo:IAO_0000112>A cell lysis, production of a cloning vector, creating a buffer.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A planned process which results in physical changes in a specified input material</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Frank Gibson</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Philippe Rocca Serra</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">material transformation</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">material processing</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000097 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000097">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000471"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">study subject role</obo:IAO_0000111>
<obo:IAO_0000112>Human subjects in a clinical trial, rats in a toxicogenomics study, tissue cutlures subjected to drug tests, fish observed in an ecotoxicology study.
Parasite example: people are infected with a parasite which is then extracted; the particpant under investigation could be the parasite, the people, or a population of which the people are members, depending on the nature of the study.
Lake example: a lake could realize this role in an investigation that assays pollution levels in samples of water taken from the lake.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A role that is realized through the execution of a study design in which the bearer of the role participates and in which data about that bearer is collected.</obo:IAO_0000115>
<obo:IAO_0000116>A participant can realize both "specimen role" and "participant under investigation role" at the same time. However "participant under investigation role" is distinct from "specimen role", since a specimen could somehow be involved in an investigation without being the thing that is under investigation.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">GROUP: Role Branch</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">Following OBI call November 2012,26th:
1. it was decided there was no need for moving the children class and making them siblings of study subject role.
2. it also settles the disambiguation about 'study subject'. This is about the individual participating in the investigation/study, Not the 'topic' (as in 'toxicity study') of the investigation/study
This note closes the issue and validates the class definition to be part of the OBI core
editor = PRS</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">participant under investigation role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000102 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000102">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000202"/>
<obo:IAO_0000111>responsible party role</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">he THERAPIST has the ability to print a separate statement for the patient and each responsible party. http://www.beaverlog.com/therapist/ez_support/billing/responsible_party_statements.htm</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a study personnel role played by a party who is accountable for the execution of a study component and can make decisions about the conduct of the study</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000118>responsible party</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">responsible party role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000103 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000103">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000102"/>
<obo:IAO_0000111>principal investigator role</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">a responsible party role played by a person responsible for the overall conduct of a study</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000118>principal investigator</obo:IAO_0000118>
<obo:IAO_0000232 xml:lang="en">CDISC definition: A person responsible for the conduct of the clinical trial at a trial site. If a trial is conducted by a team of individuals at a trial site, the investigator is the responsible leader of the team and may be called the principal investigator. 2. The individual principal investigator. 2. The individual under whose immediate direction the test article is administered or dispensed to, or used involving, a subject, or, in the event of an investigation conducted by a team of individuals, is See also sponsor-investigator.; Leiter der klinischen Prufung.Under the German Drug Law, the physician who is head of the clinical investigation (CDISC): coordinating investigator (CDISC) (also study coordinator, MUSC); sponsor-investigator. An individual who both initiates and conducts, alone or with others, a clinical trial, and under whose immediate direction the investigational product is administered to, dispensed to, or used by a subject.NOTE: The term does not include any person other than an individual, hence not a corporation, agency (CDISC)</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">principal investigator role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000112 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000112">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
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<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>specimen role</obo:IAO_0000111>
<obo:IAO_0000112>liver section; a portion of a culture of cells; a nemotode or other animal once no longer a subject (generally killed); portion of blood from a patient.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A role borne by a material entity that is obtained during a specimen collection process and that can be realized by performing measurements or observations on the specimen.</obo:IAO_0000115>
<obo:IAO_0000116>22Jun09. The definition includes whole organisms, and can include a human. The link between specimen role and study subject role has been removed. A specimen taken as part of a case study is not considered to be a population representative, while a specimen taken as representing a population, e.g. person taken from a cohort, blood specimen taken from an animal) would be considered a population representative and would also bear material sample role.</obo:IAO_0000116>
<obo:IAO_0000116>Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">blood taken from animal: animal continues in study, whereas blood has role specimen.
something taken from study subject, leaves the study and becomes the specimen.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">parasite example
- when parasite in people we study people, people are subjects and parasites are specimen
- when parasite extracted, they become subject in the following study
specimen can later be subject.</obo:IAO_0000116>
<obo:IAO_0000117>GROUP: Role Branch</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/obi-ontology/obi/issues/1013"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">specimen role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000151 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000151">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000932"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000378"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>filter paper</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A device manufacture with the intent to provide a porous unsized paper used for filtering.</obo:IAO_0000115>
<obo:IAO_0000117>Frank Gibson</obo:IAO_0000117>
<obo:IAO_0000119>sep:00107</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>filter paper</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000181 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000181">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111 xml:lang="en">population</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID12564891. Environ Sci Technol. 2003 Jan 15;37(2):223-8. Effects of historic PCB exposures on the reproductive success of the Hudson River striped bass population.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a population is a collection of individuals from the same taxonomic class living, counted or sampled at a particular site or in a particular area</obo:IAO_0000115>
<obo:IAO_0000116>1/28/2013, BP, on the call it was raised that we may want to switch to an external ontology for all populatin terms:
http://code.google.com/p/popcomm-ontology/</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">adapted from Oxford English Dictionnary</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">rem1: collection somehow always involve a selection process</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000202 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000202">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000023"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000833"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>investigation agent role</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The person perform microarray experiments and submit microarray results (including raw data, processed data) with experiment description to ArrayExpress.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A role borne by an entity and that is realized in a process that is part of an investigation in which an objective is achieved. These processes include, among others: planning, overseeing, funding, reviewing.</obo:IAO_0000115>
<obo:IAO_0000116>Implementing a study means carrying out or performing the study and providing reagents or other materials used in the study and other tasks without which the study would not happen.</obo:IAO_0000116>
<obo:IAO_0000116>Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable representing investigations run by robot scientists such as ADAM (King et al, Science, 2009)</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">GROUP: Role Branch</obo:IAO_0000117>
<obo:IAO_0000118>investigator</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI</obo:IAO_0000119>
<obo:IAO_0000232>Feb 10, 2009. changes after discussion at OBI Consortium Workshop Feb 2-6, 2009. accepted as core term.</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:OBI_0001847>study person role</obo:OBI_0001847>
<rdfs:comment>Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable investigations run by robot scientists such as ADAM (King et al, Science, 2009)</rdfs:comment>
<rdfs:label>investigation agent role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000245 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000245">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ICO_0000220"/>
<obo:IAO_0000111 xml:lang="en">organization</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">An organization is a continuant entity which can play roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based:
1) there are organization_member_roles (president, treasurer, branch
editor), with individual persons as bearers
2) there are organization_roles (employer, owner, vendor, patent holder)
3) an organization has a charter / rules / bylaws, which specify what roles
there are, how they should be realized, and how to modify the
charter/rules/bylaws themselves.
It is debatable what the organization itself is (some kind of dependent
continuant or an aggregate of people). This also determines who/what the
bearer of organization_roles' are. My personal favorite is still to define
organization as a kind of 'legal entity', but thinking it through leads to
all kinds of questions that are clearly outside the scope of OBI.
Interestingly enough, it does not seem to matter much where we place
organization itself, as long as we can subclass it (University, Corporation,
Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO,
W3C, University of Oklahoma), and have it play roles.
This leads to my proposal: We define organization through the statements 1 -
3 above, but without an 'is a' statement for now. We can leave it in its
current place in the is_a hierarchy (material entity) or move it up to
'continuant'. We leave further clarifications to BFO, and close this issue
for now.</obo:IAO_0000116>
<obo:IAO_0000117>PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Susanna Sansone</obo:IAO_0000117>
<obo:IAO_0000119>GROUP: OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000257 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000257">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0666667"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001051"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">DNA extraction</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A DNA extraction is a nucleic acid extraction where the desired output material is DNA.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">DNA extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000272 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000272">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<obo:IAO_0000111 xml:lang="en">protocol</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PCR protocol, has objective specification, amplify DNA fragment of interest, and has action specification describes the amounts of experimental reagents used (e..g. buffers, dNTPS, enzyme), and the temperature and cycle time settings for running the PCR.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:OBI_0001847>study protocol</obo:OBI_0001847>
<rdfs:label xml:lang="en">protocol</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000274 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000274">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000434"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000652"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000319"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000444"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000319"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000444"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>adding a material entity into a target</obo:IAO_0000111>
<obo:IAO_0000112>Injecting a drug into a mouse. Adding IL-2 to a cell culture. Adding NaCl into water.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">is a process with the objective to place a material entity bearing the 'material to be added role' into a material bearing the 'target of material addition role'.</obo:IAO_0000115>
<obo:IAO_0000116>Class was renamed from 'administering substance', as this is commonly used only for additions into organisms.</obo:IAO_0000116>
<obo:IAO_0000117>BP</obo:IAO_0000117>
<obo:IAO_0000119>branch derived</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">adding a material entity into a target</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000319 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000319">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000111>material to be added role</obo:IAO_0000111>
<obo:IAO_0000112>drug added to a buffer contained in a tube; substance injected into an animal;</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A role of a material entity that is realized in an "adding a material entity into a target" process where the bearer of the role is added into another material entity (the target).</obo:IAO_0000115>
<obo:IAO_0000117>Role Branch</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000232>9 March 09 from discussion with PA branch</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">material to be added role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000338 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000338">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001909"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>interpreting data</obo:IAO_0000111>
<obo:IAO_0000112>Concluding that a gene is upregulated in a tissue sample based on the band intensity in a western blot. Concluding that a patient has a infection based on measurement of an elevated body temperature and reported headache. Concluding that there were problems in an investigation because data from PCR and microarray are conflicting. Concluding that 'defects in gene XYZ cause cancer due to improper DNA repair' based on data from experiments in that study that gene XYZ is involved in DNA repair, and the conclusion of a previous study that cancer patients have an increased number of mutations in this gene.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000119>Bjoern Peters</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">drawing a conclusion based on data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000339 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000339">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000111>planning</obo:IAO_0000111>
<obo:IAO_0000112>The process of a scientist thinking about and deciding what reagents to use as part of a protocol for an experiment. Note that the scientist could be human or a "robot scientist" executing software.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">a process of creating or modifying a plan specification</obo:IAO_0000115>
<obo:IAO_0000116>7/18/2011 BP: planning used to itself be a planned process. Barry Smith pointed out that this would lead to an infinite regression, as there would have to be a plan to conduct a planning process, which in itself would be the result of planning etc. Therefore, the restrictions on 'planning' were loosened to allow for informal processes that result in an 'ad hoc plan '. This required changing from 'has_specified_output some plan specifiction' to 'has_participant some plan specification'.</obo:IAO_0000116>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>Bjoern Peters</obo:IAO_0000119>
<obo:IAO_0000119>Plans and Planned Processes Branch</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">planning</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000341 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000341">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100066"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000456"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000684"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0400168"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">histological sample preparation</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">histological sample preparation is the preparation of an input tissue via slicing and labeling to make tissue microstructure of interest visible in a future histology assay</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">histological sample preparation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000370 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000370">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<obo:IAO_0000111 xml:lang="en">contain function</obo:IAO_0000111>
<obo:IAO_0000112>A syringe, a beaker</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A contain function is a function to constrain a material entities location in space</obo:IAO_0000115>
<obo:IAO_0000117>Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117>Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000117>Frank Gibson</obo:IAO_0000117>
<obo:IAO_0000117>Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">contain function</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000372 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000372">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<obo:IAO_0000111 xml:lang="en">material separation function</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A material separation function is a function that increases the resolution between two or more material entities. The to distinction between the entities is usually based on some associated physical quality.</obo:IAO_0000115>
<obo:IAO_0000117>Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117>Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000117>Frank Gibson</obo:IAO_0000117>
<obo:IAO_0000117>Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">material separation function</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000378 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000378">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000372"/>
<obo:IAO_0000111 xml:lang="en">filter function</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A filter function is a function to prevent the flow of certain entities based on a quality or qualities of the entity while allowing entities which have different qualities to pass through</obo:IAO_0000115>
<obo:IAO_0000117>Frank Gibson</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">filter function</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000379 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000379">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<obo:IAO_0000111 xml:lang="en">mechanical function</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A mechanical function is a function that is realised via mechanical work (through an certain amount of energy transferred by some force).</obo:IAO_0000115>
<obo:IAO_0000117>Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117>Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000117>Frank Gibson</obo:IAO_0000117>
<obo:IAO_0000117>Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">http://en.wikipedia.org/wiki/Mechanical_work</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">mechanical function</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000434 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000434">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000686"/>
<obo:IAO_0000111>adding material objective</obo:IAO_0000111>
<obo:IAO_0000112>creating a mouse infected with LCM virus</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">is the specification of an objective to add a material into a target material. The adding is asymmetric in the sense that the target material largely retains its identity</obo:IAO_0000115>
<obo:IAO_0000117>BP</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">adding material objective</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000444 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000444">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000274"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>target of material addition role</obo:IAO_0000111>
<obo:IAO_0000112>peritoneum of an animal receiving an interperitoneal injection; solution in a tube receiving additional material; location of absorbed material following a dermal application.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A role of a material entity that is realized in an "adding a material entity into a target" process where the bearer of the role (the target) receives the addition of another material entity.</obo:IAO_0000115>
<obo:IAO_0000116>From Branch discussion with BP, AR, MC -- there is a need for the recipient to interact with the administered material. for example, a tooth receiving a filling was not considered to be a target role.</obo:IAO_0000116>
<obo:IAO_0000117>GROUP: Role Branch</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">target of material addition role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000450 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000450">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000014"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000111 xml:lang="en">regulatory agency</obo:IAO_0000111>
<obo:IAO_0000112>The US Environmental Protection Agency</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government.</obo:IAO_0000115>
<obo:IAO_0000117>GROUP: OBI Biomaterial Branch</obo:IAO_0000117>
<obo:IAO_0000119>WEB: en.wikipedia.org/wiki/Regulator</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">regulatory agency</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000453 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000453">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000079"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
</owl:Restriction>
</owl:allValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">measure function</obo:IAO_0000111>
<obo:IAO_0000112>A glucometer measures blood glucose concentration, the glucometer has a measure function.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Measure function is a function that is borne by a processed material and realized in a process in which information about some entity is expressed relative to some reference.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Helen Parkinson</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117>PERSON:Frank Gibson</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">measure function</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000456 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000456">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
<obo:IAO_0000111>material transformation objective</obo:IAO_0000111>
<obo:IAO_0000112>The objective to create a mouse infected with LCM virus. The objective to create a defined solution of PBS.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">an objective specifiction that creates an specific output object from input materials.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Frank Gibson</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">artifact creation objective</obo:IAO_0000118>
<obo:IAO_0000119>GROUP: OBI PlanAndPlannedProcess Branch</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">material transformation objective</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000471 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000471">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0500000"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111>study design execution</obo:IAO_0000111>
<obo:IAO_0000112>injecting a mouse with PBS solution, weighing it, and recording the weight according to a study design.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115>a planned process that carries out a study design</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">a planned process that carries out a study design</obo:IAO_0000115>
<obo:IAO_0000116>removed axiom has_part some (assay or 'data transformation') per discussion on protocol application mailing list to improve reasoner performance. The axiom is still desired.</obo:IAO_0000116>
<obo:IAO_0000119>branch derived</obo:IAO_0000119>
<obo:IAO_0000232>6/11/9: edited at workshop. Used to be: study design execution is a process with the objective to generate data according to a concretized study design. The execution of a study design is part of an investigation, and minimally consists of an assay or data transformation.</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>study design execution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000639 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000639">
<owl:equivalentClass>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000678"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000681"/>
</owl:unionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000456"/>
<obo:IAO_0000111>material separation objective</obo:IAO_0000111>
<obo:IAO_0000112>The objective to obtain multiple aliquots of an enzyme preparation. The objective to obtain cells contained in a sample of blood.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">is an objective to transform a material entity into spatially separated components.</obo:IAO_0000115>
<obo:IAO_0000117>PPPB branch</obo:IAO_0000117>
<obo:IAO_0000119>PPPB branch</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>material separation objective</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000651 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000651">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001088"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>urine specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a portion of urine collected from an organism</obo:IAO_0000115>
<obo:IAO_0000116>4/10/2011BP: It seems to me that the editor notes refer to a previous version, and are no longer relevant.</obo:IAO_0000116>
<obo:IAO_0000116>This could be instead a kind of collection of secreted stuff. Among secreted stuff there is passive, and active. urine is secreted, passiv. lavage is secreted, active</obo:IAO_0000116>
<obo:IAO_0000116>are we happy calling collection of urine a material separation?</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>urine specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000652 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000652">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000686"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>material combination</obo:IAO_0000111>
<obo:IAO_0000112>Mixing two fluids. Adding salt into water. Injecting a mouse with PBS.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">is a material processing with the objective to combine two or more material entities as input into a single material entity as output.</obo:IAO_0000115>
<obo:IAO_0000116>created at workshop as parent class for 'adding material into target', which is asymmetric, while combination encompasses all addition processes.</obo:IAO_0000116>
<obo:IAO_0000117>bp</obo:IAO_0000117>
<obo:IAO_0000119>bp</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>material combination</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000655 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000655">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>blood specimen</obo:IAO_0000111>
<obo:IAO_0000112>blood drawn from a human for glucose assay</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">a material entity derived from a portion of blood collected from an organism</obo:IAO_0000115>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>Bjoern Peters</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>blood specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000659 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000659">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000684"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>specimen collection process</obo:IAO_0000111>
<obo:IAO_0000112>drawing blood from a patient for analysis, collecting a piece of a plant for depositing in a herbarium, buying meat from a butcher in order to measure its protein content in an investigation, collecting a stone from a site</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A planned process with the objective to obtain a material entity for potential use as an input upon which measurements or observations are performed.</obo:IAO_0000115>
<obo:IAO_0000116>Definition updated following discussion on 2024-10-07 OBI dev call.</obo:IAO_0000116>
<obo:IAO_0000116>Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.</obo:IAO_0000116>
<obo:IAO_0000116>Philly2013: A specimen collection can have as part a material entity acquisition, such as ordering from a bank. The distinction is that specimen collection necessarily involves the creation of a specimen role. However ordering cell lines cells from ATCC for use in an investigation is NOT a specimen collection, because the cell lines already have a specimen role.</obo:IAO_0000116>
<obo:IAO_0000116>Philly2013: The specimen_role for the specimen is created during the specimen collection process.</obo:IAO_0000116>
<obo:IAO_0000116>label changed to 'specimen collection process' on 10/27/2014, details see tracker:
http://sourceforge.net/p/obi/obi-terms/716/</obo:IAO_0000116>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000118>specimen collection</obo:IAO_0000118>
<obo:IAO_0000232>5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession</obo:IAO_0000232>
<obo:IAO_0000232>6/9/09: used at workshop</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>specimen collection process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000671 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000671">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000740"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000747"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>sample from organism</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
<obo:IAO_0000115 xml:lang="en">a material obtained from an organism in order to be a representative of the whole</obo:IAO_0000115>
<obo:IAO_0000116>5/29: This is a helper class for now</obo:IAO_0000116>
<obo:IAO_0000116>we need to work on this: Is taking a urine sample a material separation process? If not, we will need to specify what 'taking a sample from organism' entails. We can argue that the objective to obtain a urine sample from a patient is enough to call it a material separation process, but it could dilute what material separation was supposed to be about.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>sample from organism</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000678 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000678">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000639"/>
<obo:IAO_0000111>portioning objective</obo:IAO_0000111>
<obo:IAO_0000112>The objective to obtain multiple aliquots of an enzyme preparation.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A material separation objective aiming to separate material into multiple portions, each of which contains a similar composition of the input material.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>portioning objective</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000680 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000680">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>whole organism preparation</obo:IAO_0000111>
<obo:IAO_0000112>putting a mouse in the blender. Not: putting a mouse on a scale</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A material entity which is the output of a process in which one or more whole organisms are prepared in a way to make it easier to study them, and in which the great majority of organismal parts are maintained</obo:IAO_0000115>
<obo:IAO_0000116>does this include injecting a dye to a patient to be able to visualize parts of his brain? If not, we should state that the components of the organism are substantially re-arranged.</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>whole organism preparation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000681 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000681">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000639"/>
<obo:IAO_0000111>separation into different composition objective</obo:IAO_0000111>
<obo:IAO_0000112>The objective to obtain cells contained in a sample of blood.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A material separation objective aiming to separate a material entity that has parts of different types, and end with at least one output that is a material with parts of fewer types (modulo impurities).</obo:IAO_0000115>
<obo:IAO_0000116>We should be using has the grain relations or concentrations to distinguish the portioning and other sub-objectives</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>separation into different composition objective</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000684 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000684">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
<obo:IAO_0000111>specimen collection objective</obo:IAO_0000111>
<obo:IAO_0000112>The objective to collect bits of excrement in the rainforest. The objective to obtain a blood sample from a patient.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A objective specification that is fulfilled by obtaining a material entity for potential use as an input upon which measurements or observations are performed.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">OBI recommends against subclassing this term in order to avoid further parallel hierarchies between this term and specimen collection process.</obo:IAO_0000116>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>Bjoern Peters</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>specimen collection objective</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000686 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000686">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000456"/>
<obo:IAO_0000111>material combination objective</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">is an objective to obtain an output material that contains several input materials.</obo:IAO_0000115>
<obo:IAO_0000117>PPPB branch</obo:IAO_0000117>
<obo:IAO_0000119>bp</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>material combination objective</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000740 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000740">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000112"/>
<obo:IAO_0000111>material sample role</obo:IAO_0000111>
<obo:IAO_0000112>a role borne by a portion of blood taken to represent all the blood in an organism; the role borne by a population of humans with HIV enrolled in a study taken to represent patients with HIV in general.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A material sample role is a specimen role borne by a material entity that is the output of a material sampling process.</obo:IAO_0000115>
<obo:IAO_0000116>7/13/09: Note that this is a relational role: between the sample taken and the 'sampled' material of which the sample is thought to be representative off.</obo:IAO_0000116>
<obo:IAO_0000233 rdf:resource="https://github.com/obi-ontology/obi/issues/1013"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>material sample role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000747 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000747">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000740"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
<obo:IAO_0000111>material sample</obo:IAO_0000111>
<obo:IAO_0000112>blood drawn from patient to measure his systemic glucose level. A population of humans with HIV enrolled in a study taken to represent patients with HIV in general.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A material entity that has the material sample role</obo:IAO_0000115>
<obo:IAO_0000117>OBI: workshop</obo:IAO_0000117>
<obo:IAO_0000118>sample</obo:IAO_0000118>
<obo:IAO_0000118>sample population</obo:IAO_0000118>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1013</obo:IAO_0000233>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>material sample</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000806 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000806">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000005"/>
<obo:IAO_0000111>material maintenance objective</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An objective specification maintains some or all of the qualities of a material over time.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>PERSON: Bjoern Peters</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>material maintenance objective</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000810 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000810">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000202"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>informed consent process</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A planned process with the objective to inform a person or their legal representative of legally and ethically relevant facts about a process that the person in question is asked to participate in, and which results in a documented decision as to whether the person in question will participate.</obo:IAO_0000115>
<obo:IAO_0000116>09/28/2009 Alan Ruttenberg: This is made a subclass of the higher level processual entity in BFO because I don't want to take a stand on whether it is a process aggregate. Analogous to the situation with Material entity.</obo:IAO_0000116>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119>http://clinicaltrials.gov/ct2/info/glossary#informed</obo:IAO_0000119>
<obo:IAO_0000232>2009/09/28 Alan Ruttenberg. Fucoidan-use-case</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>informed consent process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000832 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000832">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000968"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000453"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000968"/>
<obo:IAO_0000111>measurement device</obo:IAO_0000111>
<obo:IAO_0000112>A ruler, a microarray scanner, a Geiger counter.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A device in which a measure function inheres.</obo:IAO_0000115>
<obo:IAO_0000117>GROUP:OBI Philly workshop</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>measurement device</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000834 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000834">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001051"/>
<obo:IAO_0000111>high molecular weight DNA extract</obo:IAO_0000111>
<obo:IAO_0000112>Extraction of chromosomal DNA from mammalian cells by first isolating nucei</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">The output of an extraction process in which DNA molecules above a molecular weight cutoff are purified in order to exclude DNA from organellas.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>high molecular weight DNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000838 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000838">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000806"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111>material maintenance</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A planned process with the objective to maintain some or all of the characteristics of an input material over time.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>material maintenance</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000848 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000848">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0666666"/>
<obo:IAO_0000111>polyA RNA extraction</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extraction process typically involving the use of poly dT oligomers in which the desired output material is polyA RNA.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>polyA RNA extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000849 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000849">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0666666"/>
<obo:IAO_0000111>organellar RNA extraction</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extraction process in which the desired output material is RNA in the organelle(s).</obo:IAO_0000115>
<obo:IAO_0000117>Person: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>organellar RNA extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000855 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000855">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0666666"/>
<obo:IAO_0000111>total RNA extraction</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extraction process in which total cellular and organelle RNA are extracted.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment></rdfs:comment>
<rdfs:label>total RNA extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000859 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000859">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0666666"/>
<obo:IAO_0000111>cytoplasmic RNA extraction</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extraction process in which the desired output material is RNA in the cytoplasm.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cytoplasmic RNA extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000862 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000862">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000888"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>nuclear RNA extract</obo:IAO_0000111>
<obo:IAO_0000112>Isolation and purification of nuclear RNA from animal cells using Norgen Bioteck corp. cytoplasmic and nuclear RNA purification kit (http://www.norgenbiotek.com/display-product.php?ID=30)</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extract that is the output of an extraction process in which RNA molecules found in the nucleus, including mRNA precursors (pre-mRNA), are extracted.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nuclear RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000869 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000869">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000848"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>polyA RNA extract</obo:IAO_0000111>
<obo:IAO_0000112>Preparation of polyA RNA by cellulose-bound oligo-dT (Aviv, H., Leder, P. 1972. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose. Proc. Nat. Acad. Sci. USA 69, 1408-1412.)</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extract that is the output of an extraction process in which RNA molecules with poly A tail at its 3' end are purified.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>polyA RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000873 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000873">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001506"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
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<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0001421"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001506"/>
<obo:IAO_0000111>pre-mortem specimen</obo:IAO_0000111>
<obo:IAO_0000112>material obtained through a liver biopsy from a human patient</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a specimen that was taken from a live organism</obo:IAO_0000115>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>MO_705 premortem</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>pre-mortem specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000876 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000876">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000880"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000859"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
<obo:IAO_0000111>cytoplasmic RNA extract</obo:IAO_0000111>
<obo:IAO_0000112>Cytoplasmic RNA extraction from mammalian tissues to create cDNA library (Carninci P, Nakamura M, Sato K, Hayashizaki Y, Brownstein MJ. Cytoplasmic RNA extraction from fresh and frozen mammalian tissues. Biotechniques. 2002;33:306–309.)</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extract that is the output of a RNA extraction process in which RNA molecules found in the cytoplasm are extracted.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cytoplasmic RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000880 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000880">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001010"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0666666"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000643"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33697"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001010"/>
<obo:IAO_0000111>RNA extract</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">an extract which is the output of an extraction process in which RNA molecules are isolated from a specimen.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>Group: UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000888 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000888">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0666666"/>
<obo:IAO_0000111>nuclear RNA extraction</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extraction process in which the desired output material is RNA in the nucleus.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nuclear RNA extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000895 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000895">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000880"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000855"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
<obo:IAO_0000111>total RNA extract</obo:IAO_0000111>
<obo:IAO_0000112>Extraction of total RNA from cells with Qiagen mini RNeasy kit</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extract that is the output of an extraction process in which total celluar and organelle RNA molecules are isolated from a specimen.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>total RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000899 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000899">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000880"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000849"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
<obo:IAO_0000111>organellar RNA extract</obo:IAO_0000111>
<obo:IAO_0000112>Extraction of organellar RNA from plant cells using organellar RNA binding protein.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extract that is the output of an extraction process in which RNA molecules found in an organelle, e.g., mitochondrion, ER, or chloroplast, excluding the nucleus, are extracted.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>organellar RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000902 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000902">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001506"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0001422"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001506"/>
<obo:IAO_0000111>post mortem specimen</obo:IAO_0000111>
<obo:IAO_0000112>the spleen taken from a dead mouse</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a specimen that was taken from a dead organism</obo:IAO_0000115>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>MO_416 postmortem</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>post mortem specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000908 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000908">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001143"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0600038"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001051"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000643"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_16991"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001143"/>
<obo:IAO_0000111>labeled DNA extract</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a labeled specimen that is the output of a labeling process and has grain labeled DNA to be able to detect DNA in future experiments.</obo:IAO_0000115>
<obo:IAO_0000116>Need to find out if we consider labeled nucleotides still nucleotides. It is after consulting with ChEBI group. Added duirng Mar 1, 2010 dev call</obo:IAO_0000116>
<obo:IAO_0000117>Group: OBI group</obo:IAO_0000117>
<obo:IAO_0000119>Group: OBI group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>labeled DNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000909 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000909">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000162"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>cell specimen</obo:IAO_0000111>
<obo:IAO_0000112>type of sample used in the PCIRN influenza network</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen obtained by inserting a swab deeply into the vent of the cloaca of an organism and vigorously swabbing the wall. The swab should be deeply stained with fecal material and is then placed in transport medium.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://www.wpro.who.int/NR/rdonlyres/EFD2B9A7-2265-4AD0-BC98-97937B4FA83C/0/manualonanimalaidiagnosisandsurveillance.pdf</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cloacal specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000914 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000914">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000007"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001728"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002785"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>nasopharyngeal aspirate specimen</obo:IAO_0000111>
<obo:IAO_0000112>type of sample used in the PCIRN influenza network</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen which derives from nasopharyngeal mucosa after aspiration.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://www.wpro.who.int/NR/rdonlyres/EFD2B9A7-2265-4AD0-BC98-97937B4FA83C/0/manualonanimalaidiagnosisandsurveillance.pdf</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nasopharyngeal aspirate specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000915 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000915">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0302893"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0001985"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0001985"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000806"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>freezing storage</obo:IAO_0000111>
<obo:IAO_0000112>a fozen pellet used for later assay</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A storage process in temperature that maintenance the frozen status of the stored entities.</obo:IAO_0000115>
<obo:IAO_0000116>2010/3/3 Alan Ruttenberg: There is a question of whether we should have a separate objective to "prepare for maintenance"
2014/2/3 OBI dev call: "prepare for maintenance" is a separate process. For example, 'freezing' and 'flash freezing' are defined and can be used to produce frozen material for storage.
Updated both textual and logical definition. Both input and output material of freezing storage have quality frozen.</obo:IAO_0000116>
<obo:IAO_0000117>Person: Alan Ruttenberg, Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">MO_481 frozen_storage</obo:IAO_0000119>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>freezing storage</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000917 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000917">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000006"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001826"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000006"/>
<obo:IAO_0000111>nasal swab specimen</obo:IAO_0000111>
<obo:IAO_0000112>type of sample used in the PCIRN influenza network</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen obtained using a cotton swab on a stick, passed up the nostril to obtain a sample of exudate and epithelial debris for microbiological or cellular examination.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://www.wpro.who.int/NR/rdonlyres/EFD2B9A7-2265-4AD0-BC98-97937B4FA83C/0/manualonanimalaidiagnosisandsurveillance.pdf</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nasal swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000921 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000921">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001143"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0600038"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000643"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33697"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001143"/>
<obo:IAO_0000111>labeled RNA extract</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a labeled specimen that is the output of a labeling process and has grain labeled RNA to be able to detect RNA in future experiments.</obo:IAO_0000115>
<obo:IAO_0000116>Need to find out if we consider labeled nucleotides still nucleotides. It is after consulting with ChEBI group. Added duirng Mar 1, 2010 dev call</obo:IAO_0000116>
<obo:IAO_0000117>Group: OBI group</obo:IAO_0000117>
<obo:IAO_0000119>Group: OBI group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>labeled RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000922 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000922">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000915"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000112"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001472"/>
<obo:IAO_0000111>frozen specimen</obo:IAO_0000111>
<obo:IAO_0000112>Frozen blood plasma</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A specimen that has been frozen in order to store it.</obo:IAO_0000115>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119>MO_610 frozen_sample</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>frozen specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000924 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000924">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002744"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600038"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001936"/>
<obo:IAO_0000111>labeled specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A specimen that has been modified in order to be able to detect it in future experiments</obo:IAO_0000115>
<obo:IAO_0000116>added during call 3/1/2010</obo:IAO_0000116>
<obo:IAO_0000117>OBI group</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>labeled specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000927 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000927">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0302893"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000806"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>lyophilization storage</obo:IAO_0000111>
<obo:IAO_0000112></obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">a storage process with input material entity and output freeze dried material for long time storage</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119></obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment>can link to freezing-dying equipment, such as freeze-dryer, rotary evaporator, if needed</rdfs:comment>
<rdfs:label>lyophilization storage</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000932 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000932">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000968"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000372"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000968"/>
<obo:IAO_0000111>material separation device</obo:IAO_0000111>
<obo:IAO_0000112>flow cytometer</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A device with a separation function realized in a planed process</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>material separation device</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000950 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000950">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000977"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000112"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001472"/>
<obo:IAO_0000111>paraffin specimen</obo:IAO_0000111>
<obo:IAO_0000112>liver tissue embedded in paraffin</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">a specimen that is output of a paraffin storage process in which specimen is embedded in paraffin</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>MO_990 paraffin_sample</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>paraffin specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000953 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000953">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000047"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
</owl:intersectionOf>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
<obo:IAO_0000111>processed specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that has been intentionally physically modified.</obo:IAO_0000115>
<obo:IAO_0000116>A tissue sample that has been sliced and stained for a histology study.</obo:IAO_0000116>
<obo:IAO_0000117>Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>Bjoern Peters</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>processed specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000965 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000965">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000927"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000112"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001472"/>
<obo:IAO_0000111>lyophilized specimen</obo:IAO_0000111>
<obo:IAO_0000112>freezing dried DNA</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">a specimen that is output of a lyophilization storage process in which specimen is lyophilized for storage.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>MO_589 freeze_dried_sample</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>lyophilized specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000968 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000968">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>device</obo:IAO_0000111>
<obo:IAO_0000112>A voltmeter is a measurement device which is intended to perform some measure function.</obo:IAO_0000112>
<obo:IAO_0000112>An autoclave is a device that sterlizes instruments or contaminated waste by applying high temperature and pressure.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A material entity that is designed to perform a function in a scientific investigation, but is not a reagent.</obo:IAO_0000115>
<obo:IAO_0000116>2012-12-17 JAO: In common lab usage, there is a distinction made between devices and reagents that is difficult to model. Therefore we have chosen to specifically exclude reagents from the definition of "device", and are enumerating the types of roles that a reagent can perform.
2013-6-5 MHB: The following clarifications are outcomes of the May 2013 Philly Workshop. Reagents are distinguished from devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in some chemical interaction or reaction during the realization of their experimental role. By contrast, devices do not participate in such chemical reactions/interactions. Note that there are cases where devices use reagent components during their operation, where the reagent-device distinction is less clear. For example:
(1) An HPLC machine is considered a device, but has a column that holds a stationary phase resin as an operational component. This resin qualifies as a device if it participates purely in size exclusion, but bears a reagent role that is realized in the running of a column if it interacts electrostatically or chemically with the evaluant. The container the resin is in (“the column”) considered alone is a device. So the entire column as well as the entire HPLC machine are devices that have a reagent as an operating part.
(2) A pH meter is a device, but its electrode component bears a reagent role in virtue of its interacting directly with the evaluant in execution of an assay.
(3) A gel running box is a device that has a metallic lead as a component that participates in a chemical reaction with the running buffer when a charge is passed through it. This metallic lead is considered to have a reagent role as a component of this device realized in the running of a gel.
In the examples above, a reagent is an operational component of a device, but the device itself does not realize a reagent role (as bearing a reagent role is not transitive across the part_of relation). In this way, the asserted disjointness between a reagent and device holds, as both roles are never realized in the same bearer during execution of an assay.</obo:IAO_0000116>
<obo:IAO_0000117>PERSON: Helen Parkinson</obo:IAO_0000117>
<obo:IAO_0000118>instrument</obo:IAO_0000118>
<obo:IAO_0000119>OBI development call 2012-12-17.</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>device</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000971 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000971">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001472"/>
<obo:IAO_0000111>fresh specimen</obo:IAO_0000111>
<obo:IAO_0000112>a liver freshly removed from a rat</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">a specimen that is output of a specimen creation process used for an investigation without storage.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>MO_730 fresh_sample</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>fresh specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000977 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000977">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0302893"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000465"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000806"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>paraffin storage</obo:IAO_0000111>
<obo:IAO_0000112></obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a storage process with input organism or anatomical entity and paraffin and output material embedded in paraffin for long term storage</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment>need to specify paraffin or wax is one of specified input of the process</rdfs:comment>
<rdfs:label>paraffin storage</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0000981 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000981">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001003"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000112"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001472"/>
<obo:IAO_0000111>agar stab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">a specimen that is output of a process that cell culture inoculated into agar for long term storage.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>MO_971 agar_stab</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>agar stab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<obo:IAO_0000111>questionnaire</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">JT: It plays a role in collecting data that could be fleshed out more; but I'm thinking it is, in itself, an edited document.
JZ: based on textual definition of edited document, it can be defined as N&S. I prefer to leave questionnaire as a document now. We can add more restrictions in the future and use that to determine it is an edited document or not.</obo:IAO_0000116>
<obo:IAO_0000116>Need to clarify if this is a document or a directive information entity (or what their connection is))</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Jessica Turner</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Merriam-Webster</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>questionnaire</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0302893"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100060"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000806"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>agar stab storage</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a storage process with input cell culture and agar and output agar stab for long time storage</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment>need to specify that agar is one of input for this process</rdfs:comment>
<rdfs:label>agar stab storage</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001010">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0666667"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<obo:IAO_0000111>nucleic acid extract</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An extract that is the output of an extraction process in which nucleic acid molecules are isolated from a specimen.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nucleic acid extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001051 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001051">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001010"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000257"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000643"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_16991"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001010"/>
<obo:IAO_0000111>DNA extract</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">The output of an extraction process in which DNA molecules are purified in order to exclude DNA from organellas.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>Group: UPenn group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>DNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001143 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001143">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000924"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0600038"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001010"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000643"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33696"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000924"/>
<obo:IAO_0000111>labeled nucleic acid extract</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a labeled specimen that is the output of a labeling process and has grain labeled nucleic acid for detection of the nucleic acid in future experiments.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000118>labeled extract</obo:IAO_0000118>
<obo:IAO_0000119>MO_221 labeledExtract</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>labeled nucleic acid extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001225 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001225">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001404"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001305"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">genetic population background information</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">genotype information 'C57BL/6J Hnf1a+/-' in this case, C57BL/6J is the genetic population background information</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a genetic characteristics information which is a part of genotype information that identifies the population of organisms</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">proposed and discussed on San Diego OBI workshop, March 2011</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Group: OBI group</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Group: OBI group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">genetic population background information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001305 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001305">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001404"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001225"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001364"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">genotype information</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Genotype information can be: Mus musculus wild type (in this case the genetic population background information is Mus musculus), C57BL/6J Hnf1a+/- (in this case, C57BL/6J is the genetic population background information and Hnf1a+/- is the allele information</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a genetic characteristics information that is about the genetic material of an organism and minimally includes information about the genetic background and can in addition contain information about specific alleles, genetic modifications, etc.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">discussed on San Diego OBI workshop, March 2011</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Group: OBI group</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Group: OBI group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">genotype information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001364 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001364">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001404"/>
<obo:IAO_0000111 xml:lang="en">genetic alteration information</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a genetic characteristics information that is about known changes or the lack thereof from the genetic background, including allele information, duplication, insertion, deletion, etc.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">proposed and discussed on San Diego OBI workshop, March 2011</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Group: OBI group</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Group: OBI group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">genetic alteration information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001404 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001404">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/SO_0000001"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000058"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_33696"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">genetic characteristics information</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a data item that is about genetic material including polymorphisms, disease alleles, and haplotypes.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">MO_66 IndividualGeneticCharacteristics</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">MO definition:
The genotype of the individual organism from which the biomaterial was derived. Individual genetic characteristics include polymorphisms, disease alleles, and haplotypes.
examples in ArrayExpress
wild_type
MutaMouse (CD2F1 mice with lambda-gt10LacZ integration)
AlfpCre; SNF5 flox/knockout
p53 knock out
C57Bl/6 gp130lox/lox MLC2vCRE/+
fer-15; fem-1
df/df
pat1-114/pat1-114 ade6-M210/ade6-M216 h+/h+ (cells are diploid)</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">genetic characteristics information</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001468 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001468">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>cell specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A specimen primarily composed of a cell or cells collected from a multicellular organism or a cell culture.</obo:IAO_0000115>
<obo:IAO_0000116>Discussed on obi call Jan 23, 2017. To improve cell specimen that include single cell specimen. Details see tracker: https://sourceforge.net/p/obi/obi-terms/828</obo:IAO_0000116>
<obo:IAO_0000117>PERSON: Chris Stoeckert, Jie Zheng, Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000119>MO_612 cell</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cell specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001472 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001472">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000971"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0302893"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:unionOf>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
<obo:IAO_0000111>specimen with known storage state</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A specimen for which it is known whether it has been subjected to storage of a specified type.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>MO_95 BiosourceType</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>specimen with known storage state</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001479 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001479">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000477"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
<obo:IAO_0000111>specimen from organism</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that derives from an anatomical part or substance arising from an organism. Examples of tissue specimen include tissue, organ, physiological system, blood, or body location (arm).</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000118>tissue specimen</obo:IAO_0000118>
<obo:IAO_0000119>MO_954 organism_part</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>specimen from organism</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001506 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001506">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001421"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001422"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>specimen with pre- or post-mortem status</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that has been established to be taken from a live (pre-mortem) or dead (post-mortem) organism.</obo:IAO_0000115>
<obo:IAO_0000116>organizational term, used in description of specimen that is created from known pre- or post-mortem status</obo:IAO_0000116>
<obo:IAO_0000117>PERSON: Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>MO_84 OrganismStatus</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>specimen with pre- or post-mortem status</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001622 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001622">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001898"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">investigation title</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A textual entity that denotes an investigation.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">NIAID GSCID-BRC metadata working group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:OBI_0001847>study title</obo:OBI_0001847>
<obo:OBI_0001886 xml:lang="en">project title</obo:OBI_0001886>
<dc:source>NIAID GSCID-BRC</dc:source>
<rdfs:label xml:lang="en">investigation title</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001879 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001879">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000086"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">reagent</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A biological or chemical entity that bears a reagent role in virtue of it being intended for application in a scientific technique to participate in (or have molecular parts that participate in) a chemical reaction that facilitates the generation of data about some distinct entity, or the generation of some distinct material specified output.</obo:IAO_0000115>
<obo:IAO_0000116>2013-6-5 MHB: Clarifications regarding the distinction between reagetns and devices were made at the May 2013 Philly Workshop. Reagents are distinguished from devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in some chemical interaction or reaction during the realization of their experimental role. By contrast, devices do not participate in such chemical reactions/interactions. Note that there are cases where devices use reagent components during their operation, where the reagent-device distinction is less clear. For examples, see editor note on OBI:device.</obo:IAO_0000116>
<obo:IAO_0000117>PERSON:Matthew Brush</obo:IAO_0000117>
<obo:IAO_0000119>PERSON:Matthew Brush</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment>(copied from ReO)
Reagents are distinguished from devices/instruments that also serve as facilitators in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, devices do not participate in a chemical reaction/interaction during the technique.
Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance can only realize one of these roles in the execution of a given assay. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated.
In regard to the statement that reagents are 'distinct' from the specified outputs of a technique: note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).</rdfs:comment>
<rdfs:label xml:lang="en">reagent</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001898 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001898">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000300"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000066"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000066"/>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000300"/>
<obo:IAO_0000111 xml:lang="en">comment on investigation</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A textual entity that is about any of the aspects of an investigation worth noting</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>NIAID GSCID-BRC metadata working group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:OBI_0001886>Comments</obo:OBI_0001886>
<dc:source>NIAID GSCID-BRC</dc:source>
<rdfs:label xml:lang="en">comment on investigation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001909 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001909">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000124"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000338"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>conclusion based on data</obo:IAO_0000111>
<obo:IAO_0000112>The conclusion that a gene is upregulated in a tissue sample based on the band intensity in a western blot. The conclusion that a patient has a infection based on measurement of an elevated body temperature and reported headache. The conclusion that there were problems in an investigation because data from PCR and microarray are conflicting.
The following are NOT conclusions based on data: data themselves; results from pure mathematics, e.g. "13 is prime".</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that is inferred from data.</obo:IAO_0000115>
<obo:IAO_0000116>In the Philly 2013 workshop, we recognized the limitations of "conclusion textual entity", and we introduced this as more general. The need for the 'textual entity' term going forward is up for future debate.</obo:IAO_0000116>
<obo:IAO_0000117>Group:2013 Philly Workshop group</obo:IAO_0000117>
<obo:IAO_0000119>Group:2013 Philly Workshop group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>conclusion based on data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001912 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001912">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<obo:IAO_0000111>cell freezing medium</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A processed material that serves as a liquid vehicle for freezing cells for long term quiescent stroage, which contains chemicls needed to sustain cell viability across freeze-thaw cycles.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Matthew Brush</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">cell freezing medium</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001933 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001933">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111>value specification</obo:IAO_0000111>
<obo:IAO_0000112>The value of 'positive' in a classification scheme of "positive or negative"; the value of '20g' on the quantitative scale of mass.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that specifies a value within a classification scheme or on a quantitative scale.</obo:IAO_0000115>
<obo:IAO_0000116>This term is currently a descendant of 'information content entity', which requires that it 'is about' something. A value specification of '20g' for a measurement data item of the mass of a particular mouse 'is about' the mass of that mouse. However there are cases where a value specification is not clearly about any particular. In the future we may change 'value specification' to remove the 'is about' requirement.</obo:IAO_0000116>
<obo:IAO_0000117>PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>value specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001936 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001936">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002744"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600038"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<obo:IAO_0000111>molecular-labeled material</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a material entity that is the specified output of an addition of molecular label process that aims to label some molecular target to allow for its detection in a detection of molecular label assay</obo:IAO_0000115>
<obo:IAO_0000117>PERSON:Matthew Brush</obo:IAO_0000117>
<obo:IAO_0000119>OBI developer call, 3-12-12</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>molecular-labeled material</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001942 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001942">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000111 xml:lang="en">grant agency</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An organization that provides funding support for projects such as investigations.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Jie Zheng, Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>funding organization</obo:IAO_0000118>
<obo:IAO_0000119>NIAID GSCID-BRC metadata working group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<dc:source>NIAID GSCID-BRC</dc:source>
<rdfs:label xml:lang="en">grant agency</rdfs:label>
<rdfs:seeAlso>'funding organization'
http://vivoweb.org/ontology/core#FundingOrganization</rdfs:seeAlso>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002123 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002123">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0302887"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0302887"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0000052"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">IHC slide staining</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A staining using labeled antibodies, i.e. the analytical part of immunohistochemistry. The staining is applied to fixed specimens on slides to identify biomarkers in tissues.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Stoeckert, Ned Haubein</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">http://www.agilent.com/cs/library/technicaloverviews/public/08002_ihc_staining_methods.pdf</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">IHC slide staining</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002124 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002124">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0302887"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0302887"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0000052"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">H&E slide staining</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A staining using hematoxylin and eosin. The staining is applied to fixed specimens on slides to observe the whole structure and morphology of cells in a tissue; nuclei are stained dark blue/purple while cytoplasm is stained pink.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Stoeckert, Ned Haubein</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">http://www.histalim.com/accueil/activities/our-services/histology/hematoxylin-eosin-2/</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">H&E slide staining</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002125 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002125">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OMIABIS_0000052"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002124"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0000052"/>
<obo:IAO_0000111>H&E-stained fixed tissue slide specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A fixed tissue slide specimen that is the output of H&E slide staining.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Ned Haubein</obo:IAO_0000117>
<obo:IAO_0000119>OBIB, OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>H&E-stained fixed tissue slide specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002126 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002126">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OMIABIS_0000052"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002123"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0000052"/>
<obo:IAO_0000111>IHC-stained fixed tissue slide specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A fixed tissue slide specimen that is the output of immunohistochemistry slide staining.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Ned Haubein</obo:IAO_0000117>
<obo:IAO_0000119>OBIB, OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>IHC-stained fixed tissue slide specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002127 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002127">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001468"/>
<obo:IAO_0000111>single cell specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A cell specimen that contains only one cell.</obo:IAO_0000115>
<obo:IAO_0000116>Requested by Sirarat Sarntivijai (EBI). Details see tracker: https://sourceforge.net/p/obi/obi-terms/828/</obo:IAO_0000116>
<obo:IAO_0000117>PERSON: Jie Zheng, Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000119>PERSON: Jie Zheng, Alexander Diehl</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>single cell specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002423 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002423">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111>age of majority inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that uses the age of majority for a state or institution, where one is generally considered to be an adult, which if met, makes an individual suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>age of majority inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002424 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002424">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>chemotherapy treatment exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion that defines whether chemotherapy was received or is being received for a previous or current cancer, which when met, makes an individual unsuitable for a given task or participation in a given process</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>chemotherapy treatment exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002425 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002425">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>radiation treatment exclusion criteria</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion that defines whether radiation was received or is being received for a previous or current cancer, which when met, makes an individual unsuitable for a given task or participation in a given process</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>radiation treatment exclusion criteria</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002426 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002426">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>chemotherapy treatment within the recent past exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>An exclusion criterion defined by the pathologist is defined as whether the individual received chemotherapy within the last two years.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion that defines whether chemotherapy was received within a certain timeframe, which when met, makes an individual unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>chemotherapy treatment within the recent past exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002427 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002427">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>radiation treatment within the recent past exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>An exclusion criterion defined by the pathologist is defined as whether the individual received radiation therapy within the last two years.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion that defines whether radiation was received within a certain timeframe, which when met, makes an individual unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>radiation treatment within the recent past exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002428 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002428">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111>BMI range inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>An important inclusion criterion is for for the individual to have a BMI between 18.5 and 35.0</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states a Body Mass Index range, which if met, makes an individual suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>BMI range inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002429 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002429">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>blood transfusion exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>An exclusion criterion that is defined by whether the specimen donor received a whole blood transfusion within 48 hours prior to death.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion that is defined by whether the specimen donor received a whole blood transfusion within a specified time frame prior to death, which if met, makes a specimen donor unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>blood transfusion exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002430 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002430">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>history of metastatic cancer exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion defined as whether an individual has ever been diagnosed with metastatic cancer (cancer that spread beyond the initial site such as to other organs like brain bone or liver), which if met, makes the individual unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>history of metastatic cancer exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002431 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002431">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>intravenous drug use exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>Donor eligibility based on history of intravenous drug abuse in the last 5 years.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion defined as when an individual has a history of intravenous drug abuse for a specific timeframe, which if met, makes the individual unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>intravenous drug use exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002432 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002432">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>history of sex with someone with a history of blood borne infection exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>Donor eligibility based on whether the donor has a history of sex with someone who has been diagnosed or at risk for HIV/AIDS and/or HCV and/or HBV in the last 5 years.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion defined as whether an individual has a history of sex with someone who has been diagnosed or at risk for a blood borne infections disease in a specified time frame, which if met, makes the individual unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>history of sex with someone with a history of blood borne infection exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002433 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002433">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>history of sex with someone with a history of intravenous drugs exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>Donor eligibility based on whether the donor has a history of sex with someone who has used intravenous drugs in the last 5 years.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion defined as whether an individual has a history of sex with someone who has used intravenous drugs in a specified time frame, which if met, makes the individual unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>history of sex with someone with a history of intravenous drugs exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002434 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002434">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>HIV exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion defined as whether an individual has a history of repeatedly reactive screening assays for HIV-1 or HIV-2 antibody regardless of the results of supplemental assays, which if met, makes the individual unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>HIV exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002435 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002435">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500028"/>
<obo:IAO_0000111>exposure to blood borne infectious disease exclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>Donor eligibility based on whether the donor has been exposed to HIV/AIDS.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An exclusion criterion defined as whether an individual has been exposed to a blood borne infections disease through needle sticks and/or contact with non-intact skin and/or contact with open wounds and/or contact with mucous membranes, which if met, makes the individual unsuitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
<obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>exposure to blood borne infectious disease exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002453 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002453">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">health status inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">‘diagnosed with Type 2 diabetes mellitus’, ‘E11.4’, ’not finding of hypertension'</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states one or more clinically significant bodily components, dispositions, and/or bodily processes of an entity that are inferred from relevant clinical findings or self-reported, which, if met, makes the entity suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000234 xml:lang="en">MIABIS2.0</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">health status inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002454 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002454">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">clinically relevant lifestyle inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">'smoking behavior’</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states one or more clinically relevant planned processes that a human being actively participates in , which, if met, makes the human being suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000234 xml:lang="en">MIABIS2.0</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">clinically relevant lifestyle inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002455 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002455">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">clinically relevant exposure inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">'exposure to cigarette smoke’, ‘exposure to lead through drinking water'</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states one or more clinically relevant histories of exposure of an entity, which, if met, makes the entity suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000234 xml:lang="en">MIABIS2.0</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">clinically relevant exposure inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002456 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002456">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">gravidity inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">'pregnant’, ‘not pregnant'</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states one or more gravidity statuses of an organism, which, if met, makes the entity suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000234 xml:lang="en">MIABIS2.0</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">gravidity inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002460 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002460">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111>defined population inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112>inclusion based on age, sex, and living region (rural area or specified city).</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that is based on fitting within the defined characteristics of a population based study design.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000119>MIABIS 2.0</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/920</obo:IAO_0000233>
<obo:IAO_0000234>MIABIS 2.0</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">defined population inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002500 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002500">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000173"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>amniotic fluid specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from amniotic fluid.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>amniotic fluid specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002501 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002501">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002504"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001970"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002504"/>
<obo:IAO_0000111>bile specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from bile.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>bile specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002502 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002502">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001359"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>cerebrospinal fluid specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from cerbrospinal fluid.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cerebrospinal fluid specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002503 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002503">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001988"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>feces specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from feces.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>stool specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>feces specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002504 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002504">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006911"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>digestive system fluid or secretion specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from digestive system fluid or secretion.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>gastric fluid specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>digestive system fluid or secretion specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002505 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002505">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001913"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>milk specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from milk.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>milk specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002506 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002506">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002409"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>pericardial fluid specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from pericardial fluid.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>pericardial fluid specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002507 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002507">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001836"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>saliva specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from saliva.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>saliva specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002508 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002508">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007311"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>sputum specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from sputum.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>sputum specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002509 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002509">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001089"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>sweat specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from sweat.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>sweat specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002510 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002510">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001090"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>synovial fluid specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from synovial fluid.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>synovial fluid specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002511 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002511">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000004"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001797"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000004"/>
<obo:IAO_0000111>vitreous humor specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from vireous humor.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>vitreous fluid specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>vitreous humor specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002512 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002512">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002371"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002662"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>bone marrow specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from bone marrow.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>bone marrow specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002513 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002513">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001987"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>placenta specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from placenta.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>placenta specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002514 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002514">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001268"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>peritoneal fluid specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from peritoneal fluid.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>peritoneal fluid specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002515 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002515">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001087"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>pleural fluid specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from pleural fluid.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, Penn Medicine Biobank</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>pleural fluid specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002516 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002516">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000955"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>brain specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from brain.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>brain specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002517 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002517">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001037"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>hair specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from hair.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>hair specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002518 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002518">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002367"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>prostate gland specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from prostate gland.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>prostate gland specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002519 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002519">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001134"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>skeletal muscle tissue specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from skeletal muscle.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>skeletal muscle tissue specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002520 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002520">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000948"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>heart specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from heart.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>heart specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002521 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002521">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000362"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>renal medulla specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from renal medulla.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>kidney medulla specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>renal medulla specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002522 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002522">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002369"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>adrenal gland specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from adrenal gland.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>adrenal gland specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002523 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002523">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000310"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>breast specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from breast.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>mammary tissue specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>breast specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002524 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002524">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001255"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>urinary bladder specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from urinary bladder.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>urinary bladder specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002525 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002525">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007610"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>tibial artery specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from tibial artery.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>tibial artery specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002526 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002526">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002097"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>skin of body specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from skin.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>skin specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>skin of body specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002527 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002527">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001264"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>pancreas specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from pancreas.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>pancreas specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002528 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002528">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003483"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000945"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003483"/>
<obo:IAO_0000111>stomach specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from stomach.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>stomach specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002529 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002529">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>pituitary gland specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from pituitary gland.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>pituitary gland specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002530 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002530">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001013"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>adipose tissue specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from adipose tissue.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>adipose tissue specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002531 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002531">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001225"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>cortex of kidney specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from cortex of kidney.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>kidney cortex specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cortex of kidney specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002532 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002532">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003483"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002469"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003483"/>
<obo:IAO_0000111>esophagus mucosa specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from esophagus mucosa.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>esophagus mucosa specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002533 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002533">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003483"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001155"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003483"/>
<obo:IAO_0000111>colon specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from colon.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>colon specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002534 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002534">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002783"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002048"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002783"/>
<obo:IAO_0000111>lung specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from lung.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>lung specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002535 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002535">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003483"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004648"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003483"/>
<obo:IAO_0000111>esophagus muscularis mucosa specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from esophagus muscularis mucosa.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>esophagus muscularis specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>esophagus muscularis mucosa specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002536 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002536">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002516"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000956"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002516"/>
<obo:IAO_0000111>cerebral cortex specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from cerebral cortex.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>brain cortex specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cerebral cortex specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002537 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002537">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002046"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>thyroid gland specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from thyroid gland.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>thyroid gland specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002538 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002538">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002516"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002037"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002516"/>
<obo:IAO_0000111>cerebellum specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from cerebellum.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>brain cerebellum specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cerebellum specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002539 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002539">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001323"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>tibial nerve specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from tibial nerve.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>tibial nerve specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002540 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002540">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001621"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>coronary artery specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from coronary artery.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>coronary artery specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002541 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002541">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002106"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>spleen specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from spleen.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>spleen specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002542 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002542">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000947"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>aorta specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from aorta.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>aorta specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002543 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002543">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006618"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>atrial appendage specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from the atrium auricular region.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>atrial appendage specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002544 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002544">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003483"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007650"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003483"/>
<obo:IAO_0000111>esophagogastric junction specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from the esophagogastric junction.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>esophagogastric junction specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002545 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002545">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003483"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002116"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003483"/>
<obo:IAO_0000111>ileum specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from ileum.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>ileum specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002546 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002546">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002107"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>liver specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from liver.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>liver specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002547 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002547">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001830"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>minor salivary gland specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from minor salivary gland.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>minor salivary gland specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002548 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002548">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003688"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>omentum specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from omentum.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>omentum specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002549 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002549">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000992"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>ovary specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from female gonad.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>ovary specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002550 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002550">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003483"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001159"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003483"/>
<obo:IAO_0000111>sigmoid colon specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from sigmoid colon.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>sigmoid colon specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002551 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002551">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002526"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036149"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002526"/>
<obo:IAO_0000111>suprapubic skin specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from suprapubic skin.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>suprapubic skin specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002552 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002552">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000473"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>testis specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from testis.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>testis specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002553 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002553">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000995"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>uterus specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from uterus.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>uterus specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002554 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002554">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000996"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>vagina specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from vagina.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, NCI BBRB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>vagina specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002555 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002555">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002556"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002557"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">age group inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">"18-33 years old"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states an age bracket which, if met, makes an entity suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/839</obo:IAO_0000233>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">age group inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002556 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002556">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001933"/>
<obo:IAO_0000111 xml:lang="en">minimum age value specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A value specifcation that specifies the youngest age when specifying an age range.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">minimum age value specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002557 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002557">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001933"/>
<obo:IAO_0000111 xml:lang="en">maximum age value specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A value specifcation that specifies the oldest age when specifying an age range.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">maximum age value specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002558 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002558">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">use of medication inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">"received at least 2 days of vancomycin"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states a a set of medications, which, if used by an entity, makes that entity suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000233 xml:lang="en">https://github.com/obi-ontology/obi/issues/840</obo:IAO_0000233>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">use of medication inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002559 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002559">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">hospital patient inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">"included hospital patients"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion defines that a human being has to be a hospital patient to be suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">hospital patient inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002560 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002560">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">family status inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">"included married and unmarried patients", "included divorced individuals"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states one or more family statuses, which, if met, makes a human being suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">family status inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002561 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002561">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">sex inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">"included males and females", "included male patients"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states one or more sexes which, if met, makes an entity suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">sex inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002562 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002562">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">country of residence inclusion criteria</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">"include US residents"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criterion that defines and states one or more countries of residence which, if met, makes a human being suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">country of residence inclusion criteria</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002563 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002563">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500027"/>
<obo:IAO_0000111 xml:lang="en">ethnicity inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">"include only Hispanic individuals"</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">An inclusion criteria that defines and states one or more ethnicities which, if met, makes an entity suitable for a given task or participation in a given process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">ethnicity inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002573 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002573">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000880"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002574"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
<obo:IAO_0000111>polyA depleted RNA extract</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extract that is the output of an extraction process in which RNA molecules lacking poly A tails at thier 3' ends are purified.</obo:IAO_0000115>
<obo:IAO_0000117>Mark A. Miller, based on http://purl.obolibrary.org/obo/OBI_0000869</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>polyA depleted RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002574 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002574">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0666666"/>
<obo:IAO_0000111>RNA extraction with polyA depletion</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A RNA extraction process in which only RNAs lacking a polyA tail are retained</obo:IAO_0000115>
<obo:IAO_0000117>Mark A. Miller, based on OBI_0000848</obo:IAO_0000117>
<obo:IAO_0000119>UPenn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-05-11T15:01:14Z</dc:date>
<rdfs:label>RNA extraction with polyA depletion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002599 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002599">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
<obo:IAO_0000111>swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is stored on a swab as the output of a collecting specimen with swab process.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>OBIB/OBI</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/910</obo:IAO_0000233>
<obo:IAO_0000234>OBIB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002600 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002600">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
<obo:IAO_0000111>collecting specimen with swab</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen collection process that uses a swab as the collection device. A swab is an absorbent material (e.g. cotton) on a rod (e.g., wooden stick).</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>OBIB</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/910</obo:IAO_0000233>
<obo:IAO_0000234>OBIB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>collecting specimen with swab</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002603 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002603">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002604"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002032"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002604"/>
<obo:IAO_0000111>areolar swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of an areola of a breast.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>areolar swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002604 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002604">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002523"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000310"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002523"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<obo:IAO_0000111>breast swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of a breast.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>breast swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002605 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002605">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002607"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001567"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002607"/>
<obo:IAO_0000111>cheek swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the cheek portion of the inside surface of a mouth.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cheek swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002606 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002606">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000007"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001728"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000007"/>
<obo:IAO_0000111>nasopharyngeal swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of a nasopharynx.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nasopharyngeal swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002607 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002607">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000165"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<obo:IAO_0000111>oral swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the inside surface of a mouth.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>oral swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002608 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002608">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000006"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001729"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000006"/>
<obo:IAO_0000111>oropharyngeal swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of a oropharynx.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>oropharyngeal swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002609 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002609">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003483"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001052"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003483"/>
<obo:IAO_0000111>rectal swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of a rectum.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>rectal swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002610 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002610">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002607"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001723"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002607"/>
<obo:IAO_0000111>tongue swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of a tongue.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>tongue swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002611 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002611">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002554"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000996"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002554"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<obo:IAO_0000111>vagina swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of a vagina.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>vagina swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002612 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002612">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002503"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001988"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002503"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<obo:IAO_0000111>fecal swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of a feces.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118>stool swab specimen</obo:IAO_0000118>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>fecal swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002613 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002613">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ENVO_00010483"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002599"/>
<obo:IAO_0000111>environmental swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a swab from the surface of an environmenal material.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>Chris Stoeckert, OBIB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>environmental swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002627 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002627">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
<obo:IAO_0000111>ribosomal RNA-depleted RNA extract</obo:IAO_0000111>
<obo:IAO_0000112>Looking at the reads for each ribosomal RNA-depleted RNA extract, the vast majority align to protein coding genes based on the ENSEMBL annotation.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An extract of RNA which is produced through rRNA (ribosomal RNA) depletion (the removal of highly abundant rRNA species).</obo:IAO_0000115>
<obo:IAO_0000117>Dan Berrios</obo:IAO_0000117>
<obo:IAO_0000119>https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4585-1</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>ribosomal RNA-depleted RNA extract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002648 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002648">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002180"/>
<owl:qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:qualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
<obo:IAO_0000111>individual organism specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen composed of an individual organism to be studied in an investigation.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>EFO_0000542 individual</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1092</obo:IAO_0000233>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>individual organism specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002650 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002650">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000968"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000873"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>biopsy</obo:IAO_0000111>
<obo:IAO_0000112>Biopsy of a potentially cancerous mole.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen collection that obtains a sample of tissue or cell from a living multicellular organism body for diagnostic purposes by means intended to be minimally invasive.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000117>Nicole Vasilevsky</obo:IAO_0000117>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Biopsy</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002662 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002662">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002650"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002371"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>bone marrow biopsy</obo:IAO_0000111>
<obo:IAO_0000112>A bone marrow biopsy removes bone with the marrow inside to look at under a microscope</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy where a small amount of bone and a small amount of fluid and bone marrow are collected.</obo:IAO_0000115>
<obo:IAO_0000117>Nicole Vasilevsky</obo:IAO_0000117>
<obo:IAO_0000119>http://www.webmd.com/cancer/bone-marrow-aspiration-and-biopsy</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>bone marrow biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002691 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002691">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>arthropod meal of blood specimen</obo:IAO_0000111>
<obo:IAO_0000112>A specimen used in a blood meal assay to determine what is the source of blood ingested by a mosquito.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen of the blood ingested by an arthropod.</obo:IAO_0000115>
<obo:IAO_0000116>The mosquito feeds on a human for example, ingests the blood of the human, this blood is then taken from the tummy of a mosquito and a PCR may be run on this specimen to identify that the mosquito definitely fed on a human.</obo:IAO_0000116>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000118>blood meal</obo:IAO_0000118>
<obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1117</obo:IAO_0000233>
<obo:IAO_0000234>VEuPathDB</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>arthropod meal of blood specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002743 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002743">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000086"/>
<obo:IAO_0000111 xml:lang="en">molecular label role</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A reagent role inhering in a molecular entity intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay.</obo:IAO_0000115>
<obo:IAO_0000116>MHB (9-29-13): 'molecular label role' imported from the Reagent Ontology and replaced OBI:OBI_0000140 (label role).
JZ (3-30-20): discussed on the OBI call. Since the REO was never actually registered, we decided to adopt the term into OBI and replaced REO_0000171 by newly assigned ID: OBI:0002743.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Group: OBI</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">molecular tracer role</obo:IAO_0000118>
<obo:IAO_0000119>OBI developer call, 3-12-12</obo:IAO_0000119>
<obo:IAO_0000233 xml:lang="en">https://github.com/obi-ontology/obi/issues/1135</obo:IAO_0000233>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">molecular label role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002744 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002744">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002743"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001879"/>
<obo:IAO_0000111 xml:lang="en">molecular label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A molecular reagent intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">JZ (3-30-20): discussed on the OBI call. Since the REO was never actually registered, we decided to adopt the term into OBI and replaced OBI:0002744 by newly assigned ID: OBI:0002744.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Group: OBI</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">molecular tracer</obo:IAO_0000118>
<obo:IAO_0000119>OBI developer call, 3-12-12</obo:IAO_0000119>
<obo:IAO_0000233 xml:lang="en">https://github.com/obi-ontology/obi/issues/1135</obo:IAO_0000233>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">molecular label</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002746 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002746">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002508"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007311"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>induced sputum specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A sputum specimen that is collected from an organism following its inhalation of a nebulized salt solution.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins</obo:IAO_0000117>
<obo:IAO_0000119>PMC3297553</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>induced sputum specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002774 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002774">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100016"/>
<obo:IAO_0000111>platelet-poor plasma specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A blood plasma specimen that is the output of some platelet-poor plasma preparation and is the portion of plasma that contains fewer than 10,000 platelets per microliter.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Matthew Diller</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>platelet-poor plasma specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002778 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002778">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002783"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002785"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003126"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002781"/>
<obo:IAO_0000111>tracheal aspirate specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a suctioning tube from the trachea.</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000117>
<obo:IAO_0000118>tracheal wash specimen</obo:IAO_0000118>
<obo:IAO_0000119>PMID:25338241</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>tracheal aspirate specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002779 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002779">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000917"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005921"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000917"/>
<obo:IAO_0000111>mid-turbinate nasal swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a mid-turbinate nasal swab from the turbinate area of the nasal cavity.</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000117>
<obo:IAO_0000119>https://seattlechildrenslab.testcatalog.org/catalogs/185/files/11633</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>mid-turbinate nasal swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002780 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002780">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000006"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002785"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001826"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000006"/>
<obo:IAO_0000111>nasal aspirate specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a suctioning tube from the nasal cavity.</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000117>
<obo:IAO_0000118>nasal wash specimen</obo:IAO_0000118>
<obo:IAO_0000118>nasopharyngeal aspirate</obo:IAO_0000118>
<obo:IAO_0000119>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nasal aspirate specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002781 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002781">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002783"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002785"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001558"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002783"/>
<obo:IAO_0000111>lower respiratory tract aspirate specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is collected with a suctioning tube from the lower respiratory tract.</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000117>
<obo:IAO_0000118>lower respiratory tract wash specimen</obo:IAO_0000118>
<obo:IAO_0000119>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>lower respiratory tract aspirate specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002783 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002783">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000005"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001558"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000005"/>
<obo:IAO_0000111>lower respiratory tract specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from the lower respiratory tract.</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000117>
<obo:IAO_0000119>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>lower respiratory tract specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002784 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002784">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000917"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002600"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_3000016"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000917"/>
<obo:IAO_0000111>anterior nasal swab specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from the anterior nasal wall</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000117>
<obo:IAO_0000119>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>anterior nasal swab specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002785 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002785">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
<obo:IAO_0000111 xml:lang="en">aspiration specimen collection</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">Procedure using suction, usually with a thin needle and syringe, to remove bodily fluid or tissue.</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin|ORCID:0000-0003-2620-0345</obo:IAO_0000117>
<obo:IAO_0000118>aspiration procedure</obo:IAO_0000118>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C15631</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">aspiration specimen collection</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002971 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002971">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002783"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006538"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>endotracheal tube specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that derives from a biofilm that forms on the inner surface of an endotracheal tube while the tube is in the trachea. The specimen is collected upon removal of the tube from the trachea.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins ORCID:0000-0001-6595-0902</obo:IAO_0000117>
<obo:IAO_0000119>https://bmcpulmmed.biomedcentral.com/articles/10.1186/s12890-019-0926-3</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>endotracheal tube specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002972 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002972">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002781"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006538"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002785"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>endotracheal aspirate specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that derives from a biofilm that forms on the inner surface of an endotracheal tube while the tube is in the trachea. The specimen is collected by suction without removing the tube.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins ORCID:0000-0001-6595-0902</obo:IAO_0000117>
<obo:IAO_0000119>https://bmcpulmmed.biomedcentral.com/articles/10.1186/s12890-019-0926-3</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>endotracheal aspirate specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003054 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003054">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>blood specimen in vacutainer</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A blood specimen that is located in a vacutainer.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins</obo:IAO_0000117>
<obo:IAO_0000118>Vacutainer sample</obo:IAO_0000118>
<obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>blood specimen in vacutainer</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003055 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003055">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>blood specimen on filter paper</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A blood specimen that is located on a filter paper.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000118>Filter paper sample</obo:IAO_0000118>
<obo:IAO_0000119>Penn Group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>blood specimen on filter paper</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003380 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003380">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000655"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_8470000"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<obo:IAO_0000111>placental blood specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from placental blood.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins</obo:IAO_0000117>
<obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>placental blood specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003415 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003415">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000655"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_2000001"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<obo:IAO_0000111>peripheral blood mononuclear cell specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A processed specimen that is extracted from whole blood using gradient centrifugation that separates the blood into a layer of peripheral blood mononuclear cells under the top layer of plasma. It contains lymphocytes, monocytes or macrophages that are critical components in the immune system.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117>Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000118>PBMC specimen</obo:IAO_0000118>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Peripheral_blood_mononuclear_cell</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>peripheral blood mononuclear cell specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003482 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003482">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002391"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>lymph specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from a portion of lymph collected from an organism.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins ORCID:0000-0001-6595-0902</obo:IAO_0000117>
<obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>lymph specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003483 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003483">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001555"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>digestive tract specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from part of a digestive tract.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins ORCID:0000-0001-6595-0902</obo:IAO_0000117>
<obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>digestive tract specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003595 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003595">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003666"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600044"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001826"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003666"/>
<obo:IAO_0000111>nasal lavage fluid</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A specimen collected through nasal cavity lavage that contains the reagents used to for the lavage process, organisms, cells, cellular secretions, and other biomaterials present in the nasal cavity space.</obo:IAO_0000115>
<obo:IAO_0000117>Randi Vita</obo:IAO_0000117>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nasal lavage fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003610 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003610">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000111 xml:lang="en">reactant role</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A role borne by a biological or chemical entity that participates or has molecular components that participate in a chemical reaction.</obo:IAO_0000115>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">reactant role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003652 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003652">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100017"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:allValuesFrom>
<owl:Class>
<owl:complementOf rdf:resource="http://purl.obolibrary.org/obo/PR_000003918"/>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100017"/>
<obo:IAO_0000111>albumin-free serum</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A blood serum specimen that contains no albumin.</obo:IAO_0000115>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/493</obo:IAO_0000233>
<obo:IAO_0000234>Philippe Rocca-Serra</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>albumin-free serum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003666 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003666">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600044"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>lavage fluid specimen</obo:IAO_0000111>
<obo:IAO_0000112>The collection of bronchoalveolar lavage fluid (BAL) from the lungs of mice in order to study the cytokines present.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A specimen obtained through a lavage process which includes fluid in addition to cells and/or cellular secretions.</obo:IAO_0000115>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1803</obo:IAO_0000233>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>lavage fluid specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0003667 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003667">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003666"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600044"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000165"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003666"/>
<obo:IAO_0000111>oral lavage fluid</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A specimen collected through oral cavity lavage that contains the reagents used to for the lavage process, organisms, cells, cellular secretions, and other biomaterials present in the oral cavity space.</obo:IAO_0000115>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000118>mouth rinse specimen</obo:IAO_0000118>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1803</obo:IAO_0000233>
<obo:IAO_0000234>Anna Maria Masci</obo:IAO_0000234>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>oral lavage fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0100016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0600014"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>blood plasma specimen</obo:IAO_0000111>
<obo:IAO_0000112>PMID: 18217225.Sex Transm Dis. 2008 Jan;35(1):55-60. Review.Human immunodeficiency virus viral load in blood plasma and semen: review and implications of empirical findings.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a material entity which corresponds to the liquid component of blood, in which the blood cells are suspended.</obo:IAO_0000115>
<obo:IAO_0000116>03/21/2010: BP, blood plasma is defined as the output of certain separation processes, so this is in the domain of OBI, not FMA.</obo:IAO_0000116>
<obo:IAO_0000117>PERSON: Maura Gasparetto</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000118>plasma</obo:IAO_0000118>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Blood_plasma</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>blood plasma specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0100017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100016"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0302885"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0302886"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0600052"/>
</owl:unionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>blood serum specimen</obo:IAO_0000111>
<obo:IAO_0000112>PMID: 18229666.Adv Med Sci. 2007;52 Suppl 1:204-6.Antioxidant activity of blood serum and saliva in patients with periodontal disease treated due to epilepsy.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A material entity which derives from blood and corresponds to blood plasma without fibrinogen or the other clotting factors.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Maura Gasparetto</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Blood_plasma</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>blood serum specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0100026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100026">
<owl:equivalentClass>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
</owl:unionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111 xml:lang="en">organism</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">animal</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">fungus</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">plant</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">virus</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000121"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.</obo:IAO_0000115>
<obo:IAO_0000116>10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')</obo:IAO_0000116>
<obo:IAO_0000116>13-02-2009:
OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus.
This issue is outside the scope of OBI.</obo:IAO_0000116>
<obo:IAO_0000117>GROUP: OBI Biomaterial Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">WEB: http://en.wikipedia.org/wiki/Organism</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">organism</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0100051 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100051">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000112"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111 xml:lang="en">specimen</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Biobanking of blood taken and stored in a freezer for potential future investigations stores specimen; collecting a stone from a site.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A material entity that is collected for potential use as an input upon which measurements or observations are performed.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: James Malone</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP: OBI Biomaterial Branch</obo:IAO_0000119>
<obo:IAO_0000233 rdf:resource="https://github.com/obi-ontology/obi/issues/1013"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0100060 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100060">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600024"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000643"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000010"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000643"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000010"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>cultured cell population</obo:IAO_0000111>
<obo:IAO_0000112>A cultured cell population applied in an experiment: "293 cells expressing TrkA were serum-starved for 18 hours and then neurotrophins were added for 10 min before cell harvest." (Lee, Ramee, et al. "Regulation of cell survival by secreted proneurotrophins." Science 294.5548 (2001): 1945-1948).
A cultured cell population maintained in vitro: "Rat cortical neurons from 15 day embryos are grown in dissociated cell culture and maintained in vitro for 8–12 weeks" (Dichter, Marc A. "Rat cortical neurons in cell culture: culture methods, cell morphology, electrophysiology, and synapse formation." Brain Research 149.2 (1978): 279-293).</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A processed material comprised of a collection of cultured cells that has been continuously maintained together in culture and shares a common propagation history.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2013-6-5 MHB: This OBI class was formerly called 'cell culture', but label changed and definition updated following CLO alignment efforts in spring 2013, during which the intent of this class was clarified to refer to portions of a culture or line rather than a complete cell culture or line.</obo:IAO_0000116>
<obo:IAO_0000117>PERSON:Matthew Brush</obo:IAO_0000117>
<obo:IAO_0000118>cell culture sample</obo:IAO_0000118>
<obo:IAO_0000119>PERSON:Matthew Brush</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment>The extent of a 'cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). In being defined in this way, this class can be used to refer to the populations that researchers actually use in the practice of science - ie are the inputs to culturing, experimentation, and sharing. The cells in such populations will be a relatively uniform population as they have experienced similar selective pressures due to their continuous co-propagation. And this population will also have a single passage number, again owing to their common passaging history. Cultured cell populations represent only a collection of cells (ie do not include media, culture dishes, etc), and include populations of cultured unicellular organisms or cultured multicellular organism cells. They can exist under active culture, stored in a quiescent state for future use, or applied experimentally.</rdfs:comment>
<rdfs:label>cultured cell population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0100066 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100066">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000047"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000341"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">organ section</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">A liver slice used in a perfusion experiment.
Thyroidectomy during laryngectomy for advanced laryngeal carcinoma--whole organ section study with long-term functional evaluation. Clin Otolaryngol Allied Sci. 1995 Apr;20(2):145-9. PMID: 7634521</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A processed material which derives from an organ and results from a process of dissection or histological sample preparation a portion(formerly an organ section is portion of an organ removed from the context of the organ)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Helen Parkinson</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP: CEBS</obo:IAO_0000119>
<obo:IAO_0000119>GROUP: OBI Biomaterial Branch</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">organ section</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0100067 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100067">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0003666"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002048"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600044"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0003666"/>
<obo:IAO_0000111>bronchial alveolar lavage</obo:IAO_0000111>
<obo:IAO_0000112>solution containing lung derived T cells, eosinophils, and TNFa.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">Group of biomaterials present in the bronchial aveolar space of an organism which are collected through lavage including the reagents used to for the lavage process, organisms, cells, and cellular secretions present in the bronchial aveolar space.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000118>BAL</obo:IAO_0000118>
<obo:IAO_0000119>GROUP: IEDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>bronchial alveolar lavage</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0200000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111 xml:lang="en">data transformation</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A planned process that produces output data from input data.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">data transformation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0302716 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0302716">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100051"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000652"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<obo:IAO_0000111>pool of specimens</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A pool of specimens is a mixture of a population of samples which have been gathered from one or more sample populations, obtained by the physical process of mixing individual specimens, e.g. mixing the DNA collected from the individual fish.</obo:IAO_0000115>
<obo:IAO_0000116>check with advisors as to how to represent multiple instances of any class? a set of specimens which have been gathered from one or more sample_populations, obtained by the physical process of mixing individual specimens, e.g. mixing the DNA collected from the individual fish</obo:IAO_0000116>
<obo:IAO_0000117>PERSON: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000119>GROUP: CEBS</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>pool of specimens</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0302884 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0302884">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600014"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000681"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>extraction</obo:IAO_0000111>
<obo:IAO_0000112>nucleic acid extraction using phenol chloroform</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A material separation in which a desired component of an input material is separated from the remainder</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Current the output of material processing defined as the molecular entity, main component in the output material entity, rather than the material entity that have grain molecular entity.
'nucleic acid extract' is the output of 'nucleic acid extraction' and has grain 'nucleic acid'. However, the output of 'nucleic acid extraction' is 'nucleic acid' rather than 'nucleic acid extract'. We are aware of this issue and will work it out in the future.</obo:IAO_0000116>
<obo:IAO_0000117>Person:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117>Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0302885 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0302885">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600014"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000681"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000151"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>filtration</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 18524968.Filtration of CSF improves isolation of Mycobacteria.J Clin Microbiol. 2008 Jun 4.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">filtration is a process which separates components suspended in a fluid based on granularity properties relying on a filter device</obo:IAO_0000115>
<obo:IAO_0000117>Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119>OBI-Branch: adapted from wikipedia and wordnet</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">filtration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0302886 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0302886">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600014"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000681"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0400106"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>centrifugation</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 18428461.Purification of oligodendrocytes and their progenitors using immunomagnetic separation and Percoll gradient centrifugation. Curr Protoc Neurosci. 2001 May;Chapter 3:Unit 3.12.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">centrifugation is a process separating molecules by size or density using centrifugal forces generated by a spinning rotor. G-forces of several hundred thousand times gravity are generated in ultracentrifugation</obo:IAO_0000115>
<obo:IAO_0000117>Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119>adapted from http://www.fao.org/DOCREP/003/X3910E/X3910E06.htm</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">centrifugation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0302887 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0302887">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000456"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>staining</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 18540298. Role of modified bleach method in staining of acid-fast bacilli in lymph node aspirates. Acta Cytol. 2008 May-Jun;52(3):325-8.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">Staining is a process which results in the addition a class-specific (DNA, proteins, lipids, carbohydrates) dye to a substrate to qualify or quantify the presence of a specific compound.</obo:IAO_0000115>
<obo:IAO_0000117>Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119>adapted from Wikipedia: http://en.wikipedia.org/wiki/Staining</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">staining</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0302893 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0302893">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000838"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000806"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>storage</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 18550121.Total Prostate Specific Antigen Stability Confirmed After Long-Term Storage of Serum at -80C. J Urol. 2008 Jun 10.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A planned process with the objective to preserve and protect material entities by placing them in an identified location which may have a controlled environment.</obo:IAO_0000115>
<obo:IAO_0000117>Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119>OBI-Branch</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">storage</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0400106 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0400106">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000832"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000932"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000370"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000453"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000372"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0302886"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>centrifuge</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A device with a rapidly rotating container that applies centrifugal force to its contents</obo:IAO_0000115>
<obo:IAO_0000117>Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000117>Person: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000117>Trish Whetzel</obo:IAO_0000117>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Centrifuge</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>centrifuge</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0400168 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0400168">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000932"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000372"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000379"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>microtome</obo:IAO_0000111>
<obo:IAO_0000112>PMID: 9974145.Serial sectioning of thick tissue with a novel vibrating blade microtome. Brain Res Brain Res Protoc. 1999 Jan;3(3):302-7.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A microtome is a mechanical instrument used to cut biological specimens into very thin segments for further treatment (e.g. ISH) and ultimately microscopic or histologic examination. Most microtomes provide cooling facilities (cryo-microtome) and use a steel blade to cut a slice of defined thickness. Some are automatic, and some are driven by hand.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Phillippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119>PERSON: Daniel Schober</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>microtome</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0500000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000272"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">study design</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">a matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115>A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.</obo:IAO_0000115>
<obo:IAO_0000116>Editor note: there is at least an implicit restriction on the kind of data transformations that can be done based on the measured data available.</obo:IAO_0000116>
<obo:IAO_0000117>PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">experimental design</obo:IAO_0000118>
<obo:IAO_0000232 xml:lang="en">rediscussed at length (MC/JF/BP). 12/9/08). The definition was clarified to differentiate it from protocol.</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">study design</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0500026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500026">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000111 xml:lang="en">eligibility criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 17579629 -Eligibility criteria included: untreated ED-SCLC; age >/=70 and performance status 0-2, or age <70 and PS 3.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">an eligibility criterion (rule) is_a selection criterion which
defines and states the requirements (positive or negative) for an entity to be considered as suitable for a given task or participation in a process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">eligibility rule</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">Adapted from Clinical Research Glossary Version 4.0 CDICS glossary group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">eligibility criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0500027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500026"/>
<obo:IAO_0000111 xml:lang="en">inclusion criterion</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 23979341-The major inclusion criterion was patients in whom severe cerebral embolism was diagnosed at age 75 or younger (more than 9 in the NIHSS score on day 7 after the onset of stroke) .</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">an inclusion criterion (rule) is_a *eligibility criterion* which defines and states a condition which, if met, makes an entity suitable for a given task or participation in a given process. For instance, in a study protocol, inclusion criteria indicate the conditions that prospective subjects MUST meet to be eligible for participation in a study.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">inclusion condition</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">inclusion rule</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">Adapted from Clinical Research Glossary Version 4.0 CDICS glossary group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">inclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0500028 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500028">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0500026"/>
<obo:IAO_0000111 xml:lang="en">exclusion rule</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">PMID: 17600285-Exclusion criteria included the use of any topical ophthalmic or topical oral medication and/or history of ocular or oral surgery within the past six months.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">an exclusion criterion (rule) is_a *eligibility criterion* which defines and states a condition which, if met, makes an entity unsuitable for a given task or participation in a given process. For instance, in a study protocol, exclusion criteria indicate the conditions that prospective subjects SHOULD NOT meet to be eligible for participation in a study</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Adapted from Clinical Research Glossary Version 4.0 CDICS glossary group</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">exclusion criterion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0600005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100051"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000684"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">collecting specimen from organism</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">taking a sputum sample from a cancer patient, taking the spleen from a killed mouse, collecting a urine sample from a patient</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">a process with the objective to obtain a material entity that was part of an organism for potential future use in an investigation</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">IEDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">collecting specimen from organism</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0600014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600014">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000639"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">material component separation</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Using a cell sorter to separate a mixture of T cells into two fractions; one with surface receptor CD8 and the other lacking the receptor, or purification</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">a material processing in which components of an input material become segregated in space</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">IEDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">material component separation</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0600024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000838"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100060"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000079"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001912"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100060"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000806"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">maintaining cell culture</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">When harvesting blood from a human, isolating T cells, and then limited dilution cloning of the cells, the maintaining_cell_culture step comprises all steps after the initial dilution and plating of the cells into culture, e.g. placing the culture into an incubator, changing or adding media, and splitting a cell culture</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A planned process with the objective to keep cells alive in a defined environment outside of an organism.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">maintaining cell culture</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0600036 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600036">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000079"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100060"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000456"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>'establishing cell culture'</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">a process through which a new type of cell culture or cell line is created, either through the isolation and culture of one or more cells from a fresh source, or the deliberate experimental modification of an existing cell culture (e.g passaging a primary culture to become a secondary culture or line, or the immortalization or stable genetic modification of an existing culture or line).</obo:IAO_0000115>
<obo:IAO_0000117>PERSON:Matthew Brush</obo:IAO_0000117>
<obo:IAO_0000119>PERSON:Matthew Brush</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:comment>A 'cell culture' as used here referes to a new lineage of cells in culture deriving from a single biological source.. New cultures are established through the initial isolation and culturing of cells from an organismal source, or through changes in an existing cell culture or line that result in a new culture with unique characteristics. This can occur through the passaging/selection of a primary culture into a secondary culture or line, or experimental modifications of an existing cell culture or line such as an immortalization process or other stable genetic modification. This class covers establishment of cultures of either multicellular organism cells or unicellular organisms.</rdfs:comment>
<rdfs:label>establishing cell culture</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0600038 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600038">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000094"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002744"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_1110109"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001936"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000456"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">addition of molecular label</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The addition of phycoerytherin label to an anti-CD8 antibody, to label all antibodies. The addition of anti-CD8-PE to a population of cells, to label the subpopulation cells that are CD8+.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a material processing technique intended to add a molecular label to some input material entity, to allow detection of the molecular target of this label in a detection of molecular label assay</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Matthew Brush</obo:IAO_0000117>
<obo:IAO_0000118>labeling</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI developer call, 3-12-12</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">addition of molecular label</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0600044 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600044">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600014"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000639"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">lavage</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the collection of bronchoalveolar lavage fluid (BAL) from the lungs of mice in order to study the cytokines present</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A protocol application to separate cells and/or cellular secretions from an anatomical space by the introduction and removal of fluid</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This is not washing, in which case the material of interest is not the resulting fluid</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">lavage</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0600052 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600052">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600014"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000681"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">dialysis</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the use of a dialysis bag of select pore size to remove salt from collagen isolated from mouse cartilage</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a protocol application that uses diffusion through a semi-permeable membrane to separate an input material into two fractions of different composition</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Kevin Clancy</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">dialysis</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0666666 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0666666">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0666667"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000880"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">RNA extraction</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A RNA extraction is a nucleic acid extraction where the desired output material is RNA</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">requested by Helen Parkinson for MO</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">RNA extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0666667 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0666667">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0302884"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000671"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100060"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001010"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">nucleic acid extraction</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Phenol / chlorophorm extraction disolvation of protein content folllowed by ethanol precipitation of the nucleic acid fraction over night in the fridge followed by centrifugation to obtain a nucleic acid pellet.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a material separation to recover the nucleic acid fraction of an input material</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">requested by Helen Parkinson for MO. Could be defined class</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">nucleic acid extraction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_1000049 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1000049">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000680"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000341"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>whole mount tissue</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A whole organism preparation resulting from a histological preparation known as whole mount preparation where the whole specimen is mounted or spread on the microscope (glass) slide</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Helen Parkinson</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000118>whole mount sample</obo:IAO_0000118>
<obo:IAO_0000119>GROUP: OBI</obo:IAO_0000119>
<obo:IAO_0000232>PRS:22-02-2008: indicates the need to create a protocol application and distinguish it from this entity</obo:IAO_0000232>
<obo:IAO_0000232>PRS:22-02-2008: is a material which has output_role during whole mount preparation protocol-application</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>whole mount tissue</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_1110041 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1110041">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001468"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_1110046"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000029"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001468"/>
<obo:IAO_0000111>lymph node cell specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A cell specimen comprised of a mixed population of cells obtained by processing whole lymph node into individual cells, typically performed using a sieve. This population includes T cells, B cells, macrophages, and other cell types.</obo:IAO_0000115>
<obo:IAO_0000117>IEDB</obo:IAO_0000117>
<obo:IAO_0000119>IEDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>lymph node cell specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_1110046 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1110046">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600014"/>
<obo:IAO_0000111>organ harvesting</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">The process of removing an organ from its source organism</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">IEDB</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">IEDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">organ harvesting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_1110109 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1110109">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000444"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111>target of material addition</obo:IAO_0000111>
<obo:IAO_0000112>A cell culture into which a mixture of peptides is being added.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A material entity that receives the addition of another material entity in an “adding a material entity into a target” process.</obo:IAO_0000115>
<obo:IAO_0000116>10/26/09: This defined class is used as a 'macro' to reduce the size of the IEDB export.</obo:IAO_0000116>
<obo:IAO_0000119>IEDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>target of material addition</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_1110116 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1110116">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001468"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_1110046"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002106"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001468"/>
<obo:IAO_0000111>splenocyte specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A cell specimen comprised of a mixed cell population obtained by processing whole spleen into individual cells, typically performed using a sieve or blender. This population includes T cells, B cells, macrophages, and other cell types.</obo:IAO_0000115>
<obo:IAO_0000117>IEDB</obo:IAO_0000117>
<obo:IAO_0000119>IEDB</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>splenocyte specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_1200000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1200000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000950"/>
<obo:IAO_0000111>FFPE specimen</obo:IAO_0000111>
<obo:IAO_0000112>Many of today’s researchers prefer to use Formalin-Fixed Paraffin-Embedded samples of tissues for their IHC, histological or in-situ genomic analyses. Professionally fixed and embedded FFPE samples and the biomolecules they contain are reasonably stable at ambient temperatures. -based on https://lab-ally.com/histopathology-resources/ffpe-samples/</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that has been fixed in formalin and embedded in paraffin.</obo:IAO_0000115>
<obo:IAO_0000117>MIABIS</obo:IAO_0000117>
<obo:IAO_0000118>formalin-fixed paraffin-embeded specimen</obo:IAO_0000118>
<obo:IAO_0000119>https://www.biochain.com/general/what-is-ffpe-tissue/</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1019</obo:IAO_0000233>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>FFPE specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000000">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002553"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000002"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002553"/>
<obo:IAO_0000111>uterine cervix specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some uterine cervix</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>uterine cervix specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000001">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000057"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>urethra specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some urethra</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>urethra specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000002">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000316"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>cervical mucus specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some cervical mucus</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>cervical mucus specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000003">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000341"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>throat specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some throat</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>throat specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000004">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000970"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>eye specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some eye</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>eye specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000005">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001004"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>respiratory system specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some respiratory system</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>respiratory system specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000006">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000005"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001557"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000005"/>
<obo:IAO_0000111>upper respiratory tract specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some upper respiratory tract</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>upper respiratory tract specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000007">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000006"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001728"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000006"/>
<obo:IAO_0000111>nasopharynx specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some nasopharynx</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>nasopharynx specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000008">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_2000009"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001968"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000009"/>
<obo:IAO_0000111>semen specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some semen</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>semen specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000009">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001479"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001479"/>
<obo:IAO_0000111>bodily fluid specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some bodily fluid</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>bodily fluid specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000010">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002513"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007106"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002513"/>
<obo:IAO_0000111>chorionic villus specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some chorionic villus</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>chorionic villus specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000011">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002503"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007109"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002503"/>
<obo:IAO_0000111>meconium specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some meconium</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>meconium specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000012">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000655"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0012168"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_2000013"/>
<obo:IAO_0000111>umbilical cord blood specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some umbilical cord blood</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>umbilical cord blood specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000013">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000655"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013755"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<obo:IAO_0000111>arterial blood specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some arterial blood</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>arterial blood specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000014">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000655"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013756"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<obo:IAO_0000111>venous blood specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some venous blood</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>venous blood specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000015">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000655"/>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000659"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013757"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000655"/>
<obo:IAO_0000111>capillary blood specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some capillary blood</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>capillary blood specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000016">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001468"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000232"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001468"/>
<obo:IAO_0000111>erythrocyte specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some erythrocytes</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>erythrocyte specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000017">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001468"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000558"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001468"/>
<obo:IAO_0000111>reticulocyte specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some reticulocytes</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>reticulocyte specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_2000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_2000018">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001468"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000738"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0001468"/>
<obo:IAO_0000111>leukocyte specimen</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A specimen that is derived from some leukocytes</obo:IAO_0000115>
<obo:IAO_0000117>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000117>
<obo:IAO_0000117>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000117>
<obo:IAO_0000119>Christian Stoeckert ORCID:0000-0002-5714-991X</obo:IAO_0000119>
<obo:IAO_0000119>Mark A. Miller ORCID:0000-0001-9076-6066</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label>leukocyte specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000014">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000115 xml:lang="en">A representation that is either the output of a clinical history taking or a physical examination or an image finding, or some combination thereof.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000119>http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2010-07-19T10:18:02Z</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label>clinical finding</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000014"/>
<obo:IAO_0000115 xml:lang="en">A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000119>http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2009-06-23T10:21:58Z</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<obo:ICO_0000091 xml:lang="en">C0456984</obo:ICO_0000091>
<obo:ICO_0000092 xml:lang="en">C77140</obo:ICO_0000092>
<rdfs:label>laboratory finding</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000045 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000045">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 xml:lang="en">A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000119>http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2009-06-23T11:39:44Z</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label>disorder</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000056 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000056">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A measurement assay that has as input a patient-derived specimen and as output a data item that is about a quality of the specimen.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000119>http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2009-06-23T11:49:49Z</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label>clinical laboratory test</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000060 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000060">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000232>creation date: 2009-06-23T11:53:49Z</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/oae.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label>bodily process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000090 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000090">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process whose completion is hypothesized by a health care provider to eliminate, prevent, or alleviate a disorder, the signs and symptoms of a disorder, or a pathological process</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000119>http://code.google.com/p/ogms/issues/detail?id=35</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2010-03-31T04:51:11Z</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label>treatment</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000096 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000096">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process with the objective to improve the health status of a patient that directly involves the treatment, diagnosis, or prevention of disease or injury of a patient</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain
Sagar Jain</obo:IAO_0000117>
<obo:IAO_0000119>http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2011-02-21T09:57:44Z
editor date: 2017-04-18</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label>health care process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000102 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000102">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000045"/>
<obo:IAO_0000115 xml:lang="en">A disorder that involves some structural damage that is immediately caused by a catastrophic external force.</obo:IAO_0000115>
<obo:IAO_0000116>At the scale of organism (as opposed to the cellular scale or the population scale), an injury is typically the result of a catastrophic event. Consider the implications of making 'injury' a subtype of 'disorder'.
Note: Adopted subtype of disorder, and injury can occur at the scale of organism down to cellular level.</obo:IAO_0000116>
<obo:IAO_0000117>Albert Goldfain
Sagar Jain</obo:IAO_0000117>
<obo:IAO_0000119>http://groups.google.com/group/ogms-discuss/browse_thread/thread/ca0ad373f27774c5
OGMS call adoption- 16 SEPT 2015
https://docs.google.com/document/d/1iiV1-fTS7BUUSzDw3N_Afx42698YWf54-FOTY2NkAxo/edit</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2011-09-20T09:57:44Z
edited date: 30 SEPT 2015</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label>injury</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OGMS_0000104 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000104">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000096"/>
<obo:IAO_0000115 xml:lang="en">A health care process that involves the interpretation of a clinical picture from a given patient (input) and the assertion to the effect that the patient has a disease, disorder, or syndrome of a certain type, or none of these (output).</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000119>http://groups.google.com/group/ogms-discuss/browse_thread/thread/2a7008f311fac766/e7de486c94dfd82e</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2011-09-20T09:57:44Z</obo:IAO_0000232>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ogms.owl"/>
<rdfs:label>diagnostic process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMIABIS_0000050 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMIABIS_0000050">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000953"/>
<obo:IAO_0000111 xml:lang="en">fixed tissue specimen</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A processed specimen that is the output of a fixation process.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omiabis.owl"/>
<rdfs:label xml:lang="en">fixed tissue specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMIABIS_0000052 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMIABIS_0000052">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMIABIS_0000050"/>
<obo:IAO_0000111 xml:lang="en">fixed tissue slide specimen</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A fixed tissue specimen that is placed in a slide.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omiabis.owl"/>
<rdfs:label xml:lang="en">fixed tissue slide specimen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000015">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000027"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in an organization and that is realized by the providing of services in a health care encounter.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<dc:contributor>Mathias Brochhausen</dc:contributor>
<dc:creator>Amanda Hicks</dc:creator>
<rdfs:label xml:lang="en">health care provider organization role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000022">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000020"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 xml:lang="en">An object aggregate of organisms.</obo:IAO_0000115>
<rdfs:comment xml:lang="en">Any arbitrary collection of organisms. They need not be of the same taxonomic class. </rdfs:comment>
<rdfs:label xml:lang="en">collection of organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000023">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000020"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000022"/>
<rdfs:comment xml:lang="en">An object aggregate all of whose components are human beings.</rdfs:comment>
<rdfs:label xml:lang="en">collection of humans</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role inhering in an entity realized by social interactions in human society.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<rdfs:comment xml:lang="en">Previous definition: A role played by an entity in human social processes.</rdfs:comment>
<rdfs:label xml:lang="en">obsolete role in human social processes</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000025 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000025">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000024"/>
<obo:IAO_0000115 xml:lang="en">A role in human social processes that inheres in an organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<rdfs:comment xml:lang="en">Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist.
Ditto for its current descendants.</rdfs:comment>
<rdfs:label xml:lang="en">organization social role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000025"/>
<obo:IAO_0000115 xml:lang="en">An organization social role that, if realized, is realized by either a health care process or an ancillary health care process</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<rdfs:comment xml:lang="en">Previous definition: An organization social role played by an organization in health care processes.</rdfs:comment>
<rdfs:label xml:lang="en">organization health care role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000033 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000033">
<owl:equivalentClass>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000020"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
</owl:Restriction>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 xml:lang="en">An aggregate of organizations that have some feature in common, but is not itself an organization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">It is often convenient to group organizations together that otherwise might not even interact with one another. </rdfs:comment>
<rdfs:label xml:lang="en">aggregate of organizations</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000038 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000038">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role borne by a human individual or by a collection of humans regarded as possessing rights and duties enforeable at law.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000119>Malcolm N. Shaw: International Law. Cambridge University Press, Cambridge, 2008.</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<rdfs:comment xml:lang="en">We are aware of the fact that Wikipedia's definition differs from ours by saying that "Legal personality (...) is the characteristic of a non-living entity regarded by law to have the status of personhood" (http://en.wikipedia.org/wiki/Legal_personality)
However, Shaw explicates:
"In any legal system, certain entities, whether they be individuals or companies, will be regarded as possessing rights and duties enforceable at law. Thus an individual may prosecute or be prosecuted for assault and a company can sue for breach of contract. They are able to do this because the law recognises them as 'legal persons' possessing the capacity to have and to maintain certain rights, and being subject to perform specific duties. (...) In municipal law individuals, limited companies and public corporations are recognized as each possessing a distinct legal personality, the terms of which are circumscribed by the relevant legislation" (Shaw MN: International Law. Sixth Edition. Cambridge University Press, Cambridge, 2008). We hold that Shaw's position is ontological more prolific since it not only allows to explain how groups of individuals become recognized as unities at law, but also how different individuals can hold different legal personality roles (always against the context of one legal system). The latter will proof useful when dealing with the representing comatous patients or minorsat law in ontologies.</rdfs:comment>
<rdfs:label xml:lang="en">legal person role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000054 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000054">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000015"/>
<obo:IAO_0000115 xml:lang="en">A healthcare provider role that inheres in an organization and is realized by providing inpatient care.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<rdfs:label xml:lang="en">hospital role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000056 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000056">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000054"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">An organization that is the bearer of a hospital role.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<rdfs:label xml:lang="en">hospital organization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000087 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000087">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000024"/>
<obo:IAO_0000115 xml:lang="en">a role in human social processes that is realized when the bearer provides a wage or salary in exchange for some labour or services as specified by some declaration</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<rdfs:label xml:lang="en">employer role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000192 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000192">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 xml:lang="en">A process in which some participant shares some information content entity about some state of that participant with some other participant.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">S. Clint Dowland</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
<dc:contributor xml:lang="en">Matthew Diller</dc:contributor>
<dc:contributor xml:lang="en">William R. Hogan</dc:contributor>
<rdfs:comment xml:lang="en">The term 'participant' in the definition need not refer to a human agent.</rdfs:comment>
<rdfs:label xml:lang="en">obsolete communication</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000198 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000198">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OMRSE_00000192"/>
<obo:IAO_0000115 xml:lang="en">a communication in which some participant requests of some other participant an information content entity about some portion of reality</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">S. Clint Dowland</obo:IAO_0000117>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<rdfs:comment xml:lang="en">As with the parent class, 'participant' in the definition need not refer to a human agent.</rdfs:comment>
<rdfs:comment xml:lang="en">The medium and grammatical form are irrelevant. For example, the request may be written or spoken, and while it may be in the form of a question, it need not be.</rdfs:comment>
<rdfs:label xml:lang="en">information content entity-request process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00002029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00002029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111 xml:lang="en">educating</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A planned process with an active participant who acquires mental representations of information content entities (ICEs), which had no previous mental representation in the cognitive system, and through repeated use or application of these ICEs either (1) becomes the bearer of a new instance of some type of capability, and the participant was not previously the bearer of that instance of that type of capability, (2) "improves" an existing capability as demonstrated through realization(s) of that capability, and/or (3) loses a capability whose realization is considered negative.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">learning process</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/omrse.owl"/>
<obo:IAO_0000600 xml:lang="en">An act of acquiring new information and repeatedly applying that information to develop a new skill, improve an existing skill, and/or losing a skill at doing something "bad".</obo:IAO_0000600>
<rdfs:comment xml:lang="en">An interesting question is whether there must be another participant who is the "educator". Some might object that many people are "self taught". A real case of being self taught is the first person who learned to play a stringed instrument, or to spin a ball on the tip of a finger. There was no previous information about that type of skill. The ICEs acquired are via one's sensory systems (vision, proprioception, auditory, etc.).
On the other hand, in the case of those who are self-taught by reading books or watching videos, or acquiring some other form of ICEs concretized outside their brain, one argument might be that the author of those ICEs somehow "plays a role" in the education, although they cannot participate in the education process itself (If I read Aristotle, and through repeated application of the information I acquire through doing so, develop the ability to write better ontology definitions, surely Aristotle did not actively participate in my particular education process, although he did influence it in a very real way).</rdfs:comment>
<rdfs:comment xml:lang="en">The loss of a "bad" capability is something like losing a bad golf swing and replacing it with a good one. Also a capability to disrupt the classroom might be something an educating process diminishes possibly to the point of "removal" in a student.
This addition to the definition notwithstanding, we do not intend to incorporate the receipt of punishment into the definition of educating.</rdfs:comment>
<rdfs:label xml:lang="en">education process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OOSTT_00000062 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OOSTT_00000062">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that inheres in an organization and that, if realized, is realized by its bearer overseeing the overall operation of a hospital.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/OOSTT_00000062"/>
<dc:date xml:lang="en">Imported 8.30.2018</dc:date>
<rdfs:label xml:lang="en">hospital governing body role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OOSTT_00000117 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OOSTT_00000117">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000115 xml:lang="en">A role that, if realized, is realized in the organizational context of a committee.</obo:IAO_0000115>
<obo:IAO_0000412 xml:lang="en">http://purl.obolibrary.org/obo/OOSTT_00000117</obo:IAO_0000412>
<dc:date xml:lang="en">Imported 8.30.2018.</dc:date>
<rdfs:label xml:lang="en">committee member role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0000051 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000051">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000111>morphology</obo:IAO_0000111>
<obo:IAO_0000115>A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>morphology</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0000122 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000122">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000051"/>
<obo:IAO_0000111>length</obo:IAO_0000111>
<obo:IAO_0000115>A 1-D extent quality which is equal to the distance between two points.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>length</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0000125 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000125">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001018"/>
<obo:IAO_0000111>mass</obo:IAO_0000111>
<obo:IAO_0000115>A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>mass</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0000146 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000146">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001018"/>
<obo:IAO_0000111>temperature</obo:IAO_0000111>
<obo:IAO_0000115>A physical quality of the thermal energy of a system.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>temperature</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0000169 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000169">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001995"/>
<obo:IAO_0000111>viability</obo:IAO_0000111>
<obo:IAO_0000115>An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>viability</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0001018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000111>physical quality</obo:IAO_0000111>
<obo:IAO_0000115>A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>physical quality</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0001241 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001241">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000111>physical object quality</obo:IAO_0000111>
<obo:IAO_0000115>A quality which inheres in a continuant.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>physical object quality</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0001421 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001421">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000169"/>
<obo:IAO_0000111>alive</obo:IAO_0000111>
<obo:IAO_0000115>A viability quality inhering in a bearer by virtue of the bearer's condition before death.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>alive</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0001422 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001422">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000169"/>
<obo:IAO_0000111>dead</obo:IAO_0000111>
<obo:IAO_0000115>A viability quality inhering in a bearer by virtue of the cessation of the bearer's life.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>dead</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0001985 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001985">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000146"/>
<obo:IAO_0000111>frozen</obo:IAO_0000111>
<obo:IAO_0000115>A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>frozen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0001995 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001995">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000111>organismal quality</obo:IAO_0000111>
<obo:IAO_0000115>A quality that inheres in an entire organism or part of an organism.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>organismal quality</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PR_000000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PR_000000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_16670"/>
<obo:IAO_0000111>protein</obo:IAO_0000111>
<obo:IAO_0000112>antithrombin III is a protein</obo:IAO_0000112>
<obo:IAO_0000115>An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA, and any derivatives thereof.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pr.owl"/>
<rdfs:label>protein</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PR_000003918 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PR_000003918">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PR_000000001"/>
<obo:IAO_0000111>albumin</obo:IAO_0000111>
<obo:IAO_0000115>A protein that is a translation product of the human ALB gene or a 1:1 ortholog thereof.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pr.owl"/>
<rdfs:label>albumin</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:IAO_0000111>region</obo:IAO_0000111>
<obo:IAO_0000115>A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids.</obo:IAO_0000115>
<obo:IAO_0000118>primary structure of sequence macromolecule</obo:IAO_0000118>
<obo:IAO_0000118>sequence</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label>region</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>uterine cervix</obo:IAO_0000111>
<obo:IAO_0000115>Lower, narrow portion of the uterus where it joins with the top end of the vagina.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>uterine cervix</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>pituitary gland</obo:IAO_0000111>
<obo:IAO_0000115>The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>pituitary gland</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>lymph node</obo:IAO_0000111>
<obo:IAO_0000115>Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>lymph node</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000057 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000057">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>urethra</obo:IAO_0000111>
<obo:IAO_0000115>The fibromuscular tubular canal through which urine is discharged from the bladder to the exterior via the external urinary meatus; in males, the urethra is joined by the ejaculatory ducts and serves as a passageway for semen during ejaculation, as well as a canal for urine during voiding; in females, the urethra is shorter and emerges above the vaginal opening.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>urethra</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000162 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000162">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>cloaca</obo:IAO_0000111>
<obo:IAO_0000115>Common chamber into which the intestines and excretory system opens. Arises during development in all vertebrates, but in many it becomes subdivided, lost or incorporated into other structures.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>cloaca</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000165 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000165">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>mouth</obo:IAO_0000111>
<obo:IAO_0000115>The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks).</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>mouth</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000173 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000173">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>amniotic fluid</obo:IAO_0000111>
<obo:IAO_0000115>Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>amniotic fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000178 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000178">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>blood</obo:IAO_0000111>
<obo:IAO_0000115>A fluid that is composed of blood plasma and erythrocytes.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>blood</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000310 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000310">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>breast</obo:IAO_0000111>
<obo:IAO_0000115>The upper ventral region of the torso of an organism.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>breast</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000316 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000316">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>cervical mucus</obo:IAO_0000111>
<obo:IAO_0000115>A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>cervical mucus</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000341 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000341">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>throat</obo:IAO_0000111>
<obo:IAO_0000115>In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>throat</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000362 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000362">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000481"/>
<obo:IAO_0000111>renal medulla</obo:IAO_0000111>
<obo:IAO_0000115>The inner portion of the kidney consisting of the renal pyramids.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>renal medulla</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000463 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000463">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>organism substance</obo:IAO_0000111>
<obo:IAO_0000115>Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>organism substance</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000465 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000465">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111>material anatomical entity</obo:IAO_0000111>
<obo:IAO_0000115>Anatomical entity that has mass.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>material anatomical entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000473 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000473">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>testis</obo:IAO_0000111>
<obo:IAO_0000115>A gonad of a male animal. A gonad produces and releases sperm.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>testis</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000477 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000477">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111>anatomical cluster</obo:IAO_0000111>
<obo:IAO_0000115>Anatomical group whose component anatomical structures lie in close proximity to each other.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>anatomical cluster</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000479 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000479">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>tissue</obo:IAO_0000111>
<obo:IAO_0000115>Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>tissue</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000481 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000481">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>multi-tissue structure</obo:IAO_0000111>
<obo:IAO_0000115>Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>multi-tissue structure</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000945 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000945">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>stomach</obo:IAO_0000111>
<obo:IAO_0000115>An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>stomach</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000947 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000947">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>aorta</obo:IAO_0000111>
<obo:IAO_0000115>The main trunk of the systemic arterial system that carries blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>aorta</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000948 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000948">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>heart</obo:IAO_0000111>
<obo:IAO_0000115>A myogenic muscular circulatory organ found in the vertebrate cardiovascular system composed of chambers of cardiac muscle. It is the primary circulatory organ.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>heart</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000955 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000955">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>brain</obo:IAO_0000111>
<obo:IAO_0000115>The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>brain</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000956 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000956">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>cerebral cortex</obo:IAO_0000111>
<obo:IAO_0000115>The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>cerebral cortex</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000970 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000970">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>eye</obo:IAO_0000111>
<obo:IAO_0000115>An organ that detects light.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>eye</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000992 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000992">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>ovary</obo:IAO_0000111>
<obo:IAO_0000115>The gonad of a female organism which contains germ cells.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>ovary</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000995 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000995">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>uterus</obo:IAO_0000111>
<obo:IAO_0000115>The female muscular organ of gestation in which the developing embryo or fetus is nourished until birth.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>uterus</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0000996 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000996">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>vagina</obo:IAO_0000111>
<obo:IAO_0000115>A fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>vagina</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>respiratory system</obo:IAO_0000111>
<obo:IAO_0000115>Functional system which consists of structures involved in respiration.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>respiratory system</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<obo:IAO_0000111>adipose tissue</obo:IAO_0000111>
<obo:IAO_0000115>Portion of connective tissue composed of adipocytes enmeshed in areolar tissue.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>adipose tissue</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001037 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001037">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>strand of hair</obo:IAO_0000111>
<obo:IAO_0000115>A filament, mostly protein, that grows from follicles found in the dermis[WP].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>strand of hair</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001052 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001052">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>rectum</obo:IAO_0000111>
<obo:IAO_0000115>The terminal portion of the intestinal tube, terminating with the anus.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>rectum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001087 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001087">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>pleural fluid</obo:IAO_0000111>
<obo:IAO_0000115>Transudate contained in the pleural cavity.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>pleural fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001088 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001088">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>urine</obo:IAO_0000111>
<obo:IAO_0000115>Excretion that is the output of a kidney.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>urine</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001089 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001089">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>sweat</obo:IAO_0000111>
<obo:IAO_0000115>Secretion produced by a sweat gland.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>sweat</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001090 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001090">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>synovial fluid</obo:IAO_0000111>
<obo:IAO_0000115>Joint fluid is a transudate of plasma that is actively secreted by synovial cells.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>synovial fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001134 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001134">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<obo:IAO_0000111>skeletal muscle tissue</obo:IAO_0000111>
<obo:IAO_0000115>Muscle tissue that consists primarily of skeletal muscle fibers.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>skeletal muscle tissue</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001155 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001155">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>colon</obo:IAO_0000111>
<obo:IAO_0000115>A portion of the large intestine before it becomes the rectum. In mammals, the colon is the most part of the large intestine, excluding the vermiform appendix, the rectum and the anal canal.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>colon</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001159 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001159">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>sigmoid colon</obo:IAO_0000111>
<obo:IAO_0000115>The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>sigmoid colon</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001225 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001225">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>cortex of kidney</obo:IAO_0000111>
<obo:IAO_0000115>Outer cortical portion of the kidney, between the renal capsule and the renal medulla.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>cortex of kidney</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001255 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001255">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>urinary bladder</obo:IAO_0000111>
<obo:IAO_0000115>Distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>urinary bladder</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001264 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001264">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>pancreas</obo:IAO_0000111>
<obo:IAO_0000115>An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>pancreas</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001268 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001268">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>peritoneal fluid</obo:IAO_0000111>
<obo:IAO_0000115>Transudate contained in the peritoneal cavity.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>peritoneal fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001323 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001323">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>tibial nerve</obo:IAO_0000111>
<obo:IAO_0000115>The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>tibial nerve</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001359 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001359">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>cerebrospinal fluid</obo:IAO_0000111>
<obo:IAO_0000115>A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>cerebrospinal fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001555 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001555">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>digestive tract</obo:IAO_0000111>
<obo:IAO_0000115>A tube extending from the mouth to the anus.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>digestive tract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001557 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001557">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>upper respiratory tract</obo:IAO_0000111>
<obo:IAO_0000115>The segment of the respiratory tract that starts proximally with the nose and ends distally with the cricoid cartilage, before continuing to the trachea.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>upper respiratory tract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001558 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001558">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>lower respiratory tract</obo:IAO_0000111>
<obo:IAO_0000115>The segment of the respiratory tract that starts proximally with the trachea and includes all distal structures including the lungs[WP,modified].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>lower respiratory tract</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001567 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001567">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>cheek</obo:IAO_0000111>
<obo:IAO_0000115>A fleshy subdivision of one side of the face bounded by an eye, ear and the nose.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>cheek</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001621 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001621">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001637"/>
<obo:IAO_0000111>coronary artery</obo:IAO_0000111>
<obo:IAO_0000115>An artery that supplies the myocardium.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>coronary artery</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001637 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001637">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>artery</obo:IAO_0000111>
<obo:IAO_0000115>An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>artery</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001723 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001723">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>tongue</obo:IAO_0000111>
<obo:IAO_0000115>A muscular organ in the floor of the mouth.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>tongue</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001728 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001728">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>nasopharynx</obo:IAO_0000111>
<obo:IAO_0000115>The section of the pharynx that lies above the soft palate.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>nasopharynx</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001729 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001729">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>oropharynx</obo:IAO_0000111>
<obo:IAO_0000115>The portion of the pharynx that lies between the soft palate and the upper edge of the epiglottis.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>oropharynx</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001797 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001797">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>vitreous humor</obo:IAO_0000111>
<obo:IAO_0000115>A transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>vitreous humor</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001826 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001826">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>nasal cavity mucosa</obo:IAO_0000111>
<obo:IAO_0000115>The mucous membrane that lines the nasal cavity[MP].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>nasal cavity mucosa</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001830 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001830">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>minor salivary gland</obo:IAO_0000111>
<obo:IAO_0000115>One of the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>minor salivary gland</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001836 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001836">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>saliva</obo:IAO_0000111>
<obo:IAO_0000115>A fluid produced in the oral cavity by salivary glands, typically used in predigestion, but also in other functions.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>saliva</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001913 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001913">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>milk</obo:IAO_0000111>
<obo:IAO_0000115>An emulsion of fat globules within a fluid that is secreted by the mammary gland during lactation.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>milk</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001968 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001968">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>semen</obo:IAO_0000111>
<obo:IAO_0000115>Organism substance that is composed of sperm cells suspended in seminal fluid.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>semen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001970 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001970">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>bile</obo:IAO_0000111>
<obo:IAO_0000115>Vital aqueous secretion of the liver that is formed by hepatocytes and modified down stream by absorptive and secretory properties of the bile duct epithelium.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>bile</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001987 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001987">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>placenta</obo:IAO_0000111>
<obo:IAO_0000115>Organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>placenta</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0001988 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001988">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>feces</obo:IAO_0000111>
<obo:IAO_0000115>Portion of semisolid bodily waste discharged through the anus[MW,modified].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>feces</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002032">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>areola</obo:IAO_0000111>
<obo:IAO_0000115>Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>areola</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002037 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002037">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000481"/>
<obo:IAO_0000111>cerebellum</obo:IAO_0000111>
<obo:IAO_0000115>Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>cerebellum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002046 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002046">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>thyroid gland</obo:IAO_0000111>
<obo:IAO_0000115>A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>thyroid gland</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002048 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002048">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>lung</obo:IAO_0000111>
<obo:IAO_0000115>Respiration organ that develops as an outpocketing of the esophagus.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>lung</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002097 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002097">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>skin of body</obo:IAO_0000111>
<obo:IAO_0000115>The organ covering the body that consists of the dermis and epidermis.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>skin of body</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002106 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002106">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>spleen</obo:IAO_0000111>
<obo:IAO_0000115>The organ that functions to filter blood and to store red corpuscles and platelets.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>spleen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002107 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002107">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>liver</obo:IAO_0000111>
<obo:IAO_0000115>An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>liver</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002116 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002116">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>ileum</obo:IAO_0000111>
<obo:IAO_0000115>The portion of the small intestine that extends from the jejunum to the colon.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>ileum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002367 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002367">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>prostate gland</obo:IAO_0000111>
<obo:IAO_0000115>The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>prostate gland</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002369 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002369">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>adrenal gland</obo:IAO_0000111>
<obo:IAO_0000115>Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>adrenal gland</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002371 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002371">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<obo:IAO_0000111>bone marrow</obo:IAO_0000111>
<obo:IAO_0000115>The soft tissue that fills the cavities of bones.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>bone marrow</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002391 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002391">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>lymph</obo:IAO_0000111>
<obo:IAO_0000115>Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system through lymph capillaries[WP].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>lymph</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002409 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002409">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006314"/>
<obo:IAO_0000111>pericardial fluid</obo:IAO_0000111>
<obo:IAO_0000115>Transudate contained in the pericardial cavity.[FMA].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>pericardial fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0002469 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002469">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>esophagus mucosa</obo:IAO_0000111>
<obo:IAO_0000115>A mucosa that is part of a esophagus [Automatically generated definition].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>esophagus mucosa</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0003126 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0003126">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>trachea</obo:IAO_0000111>
<obo:IAO_0000115>The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>trachea</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0003688 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0003688">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>omentum</obo:IAO_0000111>
<obo:IAO_0000115>A fold of peritoneum originating at the stomach and supporting the viscera.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>omentum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0004648 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004648">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000479"/>
<obo:IAO_0000111>esophagus muscularis mucosa</obo:IAO_0000111>
<obo:IAO_0000115>A muscularis mucosa that is part of a esophagus.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>esophagus muscularis mucosa</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0005921 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0005921">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>middle nasal concha</obo:IAO_0000111>
<obo:IAO_0000115>The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>middle nasal concha</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0006314 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0006314">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>bodily fluid</obo:IAO_0000111>
<obo:IAO_0000115>Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>bodily fluid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0006538 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0006538">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>respiratory system fluid/secretion</obo:IAO_0000111>
<obo:IAO_0000115>A portion of organism substance that secreted_by a respiratory system.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>respiratory system fluid/secretion</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0006618 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0006618">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000481"/>
<obo:IAO_0000111>atrium auricular region</obo:IAO_0000111>
<obo:IAO_0000115>A small conical pouch projections located on the upper anterior portion of each atrium of the heart.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>atrium auricular region</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0006911 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0006911">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
<obo:IAO_0000111>digestive system secreted substance</obo:IAO_0000111>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>digestive system secreted substance</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0007106 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0007106">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>chorionic villus</obo:IAO_0000111>
<obo:IAO_0000115>One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>chorionic villus</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0007109 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0007109">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001988"/>
<obo:IAO_0000111>meconium</obo:IAO_0000111>
<obo:IAO_0000115>A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>meconium</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0007311 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0007311">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006538"/>
<obo:IAO_0000111>sputum</obo:IAO_0000111>
<obo:IAO_0000115>Matter ejected from the lungs, bronchi, and trachea, through the mouth.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>sputum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0007610 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0007610">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001637"/>
<obo:IAO_0000111>tibial artery</obo:IAO_0000111>
<obo:IAO_0000115>The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and pes. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>tibial artery</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0007650 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0007650">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>esophagogastric junction</obo:IAO_0000111>
<obo:IAO_0000115>The junction between the esophagus and the stomach epithelium.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>esophagogastric junction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0012168 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012168">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013755"/>
<obo:IAO_0000111>umbilical cord blood</obo:IAO_0000111>
<obo:IAO_0000115>Blood that remains in the placenta and in the attached umbilical cord after childbirth[WP].</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>umbilical cord blood</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0013755 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0013755">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
<obo:IAO_0000111>arterial blood</obo:IAO_0000111>
<obo:IAO_0000115>A blood that is part of a artery.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>arterial blood</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0013756 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0013756">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
<obo:IAO_0000111>venous blood</obo:IAO_0000111>
<obo:IAO_0000115>A blood that is part of a vein.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>venous blood</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0013757 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0013757">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
<obo:IAO_0000111>capillary blood</obo:IAO_0000111>
<obo:IAO_0000115>A blood that is part of a capillary.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>capillary blood</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_0036149 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036149">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>suprapubic skin</obo:IAO_0000111>
<obo:IAO_0000115>Area of skin in the hypoastric region of the abdomen.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>suprapubic skin</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_3000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_3000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
<obo:IAO_0000111>anterior nasal wall</obo:IAO_0000111>
<obo:IAO_0000115>Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>anterior nasal wall</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UBERON_8470000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8470000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000178"/>
<obo:IAO_0000111>placental blood</obo:IAO_0000111>
<obo:IAO_0000115>Blood located in the placenta.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<rdfs:label>placental blood</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
<obo:IAO_0000111>length unit</obo:IAO_0000111>
<obo:IAO_0000115>A unit which is a standard measure of the distance between two points.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uo.owl"/>
<rdfs:label>length unit</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UO_0000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
<obo:IAO_0000111>mass unit</obo:IAO_0000111>
<obo:IAO_0000115>A unit which is a standard measure of the amount of matter/energy of a physical object.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uo.owl"/>
<rdfs:label>mass unit</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
<obo:IAO_0000111>time unit</obo:IAO_0000111>
<obo:IAO_0000115>A unit which is a standard measure of the dimension in which events occur in sequence.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/uo.owl"/>
<rdfs:label>time unit</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/topic_0003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/topic_0003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115>A category denoting a rather broad domain or field of interest, study, application, work, data, or technology. Topics have no clearly defined borders between each other.</obo:IAO_0000115>
<oboInOwl:id>topic:0003</oboInOwl:id>
<rdfs:label>Topic</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ico.owl#Belongs_in_CRO -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ico.owl#Belongs_in_CRO">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<rdfs:comment xml:lang="en">This is a dummy class to be deprecated after it has fulfilled its organization purposes</rdfs:comment>
<rdfs:label>obsolete ICO Classes to Move to RUBRIC</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ico.owl#Belongs_in_D-Acts -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ico.owl#Belongs_in_D-Acts">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<rdfs:comment xml:lang="en">This is a dummy class to be deprecated after it has fulfilled its organization purposes</rdfs:comment>
<rdfs:label>obsolete ICO Classes to Move to D-Acts</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.unep.org/sdg/SDGIO_00000024 -->
<owl:Class rdf:about="http://purl.unep.org/sdg/SDGIO_00000024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000112 xml:lang="en">Editors Note: E.g., "There are several definitions available for the term 'vulnerable population', the words simply imply the disadvantaged sub-segment of the community requiring utmost care, specific ancillary considerations and augmented protections in research. The vulnerable individuals’ freedom and capability to protect one-self from intended or inherent risks is variably abbreviated, from decreased freewill to inability to make informed choices."
Preethi Shivayogi (2013). Vulnerable population and methods for their safeguard. Perspectives in clinical research, 4(1), 53-7.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A disposition of an entity to undergo undesirable change in response to some exposure.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.unep.org/sdg/SDGIO_00000024"/>
<dc:date xml:lang="en">Imported 08.22.2018</dc:date>
<rdfs:label xml:lang="en">vulnerability</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_000184 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_000184">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000302"/>
<obo:IAO_0000115 xml:lang="en">A legal name is a name given at birth, or which appears on their birth certificate, marriage certificate, or change of name certificate.</obo:IAO_0000115>
<obo:IAO_0000232 xml:lang="en">from http://semanticscience.org/resource/SIO_000184</obo:IAO_0000232>
<rdfs:label xml:lang="en">legal name</rdfs:label>
</owl:Class>
<!-- http://www.geneontology.org/formats/oboInOwl#ObsoleteClass -->
<owl:Class rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass">
<rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
<rdfs:label>Obsolete Class</rdfs:label>
</owl:Class>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity -->
<owl:Class rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115 xml:lang="en">An information content entity that consists of a set of propositions that describe some entity.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">https://github.com/CommonCoreOntology/CommonCoreOntologies</obo:IAO_0000119>
<dc:date xml:lang="en">Retrieved from Common Core Ontologies 7/17/2018</dc:date>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:label xml:lang="en">descriptive information content entity</rdfs:label>
</owl:Class>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity -->
<owl:Class rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115 xml:lang="en">An Information Content Entity that consists of a set of symbols that denote some Entity.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">https://github.com/CommonCoreOntology/CommonCoreOntologies</obo:IAO_0000119>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:comment xml:lang="en">[Merriam-Webster]
(1) Definition of 'designate as' : to choose (someone or something) for (a particular role or purpose)
(2) Definition of 'designate': (Entry 2 of 2) <transitive verb> 1: to indicate and set apart for a specific purpose, office, or duty
(3) Definition of 'denote': <transitive verb> 1: to serve as an indication of : BETOKEN 2: to serve as an arbitrary mark for
red flares denoting danger, 3: to make known : ANNOUNCE
(4) Also 'demarcate' or 'delimit'</rdfs:comment>
<rdfs:label xml:lang="en">Designative Information Content Entity</rdfs:label>
</owl:Class>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/Government -->
<owl:Class rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/Government">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000245"/>
<obo:IAO_0000115 xml:lang="en">An Organization that exercises executive, legislative, or judicial authority over a Geopolitical Entity.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">https://en.wikipedia.org/wiki/Government</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">is curated in ontology: http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology</obo:IAO_0000116>
<obo:IAO_0000412 rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/Government"/>
<dc:date xml:lang="en">Imported 8.30.2018</dc:date>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:label xml:lang="en">government</rdfs:label>
</owl:Class>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/Stasis -->
<owl:Class rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/Stasis">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 xml:lang="en">A process in which some independent continuant endures and one or more of the dependent entities it bears does not change in kind or intensity.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">https://github.com/CommonCoreOntology/CommonCoreOntologies</obo:IAO_0000119>
<dc:date xml:lang="en">Retrieved from Common Core Ontologies 7/17/2018</dc:date>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:label xml:lang="en">stasis</rdfs:label>
</owl:Class>
<!-- http://www.ontologyrepository.com/CommonCoreOntologies/StasisOfGenericallyDependentContinuant -->
<owl:Class rdf:about="http://www.ontologyrepository.com/CommonCoreOntologies/StasisOfGenericallyDependentContinuant">
<rdfs:subClassOf rdf:resource="http://www.ontologyrepository.com/CommonCoreOntologies/Stasis"/>
<obo:IAO_0000115 xml:lang="en">A stasis in which some independent continuant bears some generically dependent continuant that remains unchanged during a temporal interval.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">https://github.com/CommonCoreOntology/CommonCoreOntologies</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">At this time only stasis of genetically dependent continuant will be represented, leaving open the possibility of modeling other types of stasis as represented in the Common Core Ontologies. An example use case would be the transition of law enumerated by one document to a new iteration of the document for the same law. In this case, the old document would no longer be ‘legally effective’ and the corresponding stasis would cease.</obo:IAO_0000232>
<dc:date xml:lang="en">Retrieved from Common Core Ontologies 7/17/2018</dc:date>
<dc:license xml:lang="en">BSD 3-Clause License
Copyright (c) 2017, CUBRC, Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</dc:license>
<rdfs:label xml:lang="en">stasis of generically dependent continuant</rdfs:label>
</owl:Class>
<!-- http://www.w3.org/2002/07/owl#Thing -->
<owl:Class rdf:about="http://www.w3.org/2002/07/owl#Thing">
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</owl:Class>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/GAZ_00000448 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GAZ_00000448"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000002 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000002">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">example to be eventually removed</obo:IAO_0000111>
<rdfs:label xml:lang="en">example to be eventually removed</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000103 -->
<owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000103">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">failed exploratory term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">failed exploratory term</rdfs:label>
</owl:Thing>
<!-- http://purl.obolibrary.org/obo/IAO_0000120 -->
<owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000120">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">metadata complete</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.</obo:IAO_0000115>
<rdfs:label xml:lang="en">metadata complete</rdfs:label>
</owl:Thing>
<!-- http://purl.obolibrary.org/obo/IAO_0000121 -->
<owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000121">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">organizational term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Term created to ease viewing/sort terms for development purpose, and will not be included in a release</obo:IAO_0000115>
<obo:IAO_0000117>PERSON:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">organizational term</rdfs:label>
</owl:Thing>
<!-- http://purl.obolibrary.org/obo/IAO_0000122 -->
<owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000122">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">ready for release</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."</obo:IAO_0000115>
<rdfs:label xml:lang="en">ready for release</rdfs:label>
</owl:Thing>
<!-- http://purl.obolibrary.org/obo/IAO_0000123 -->
<owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000123">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">metadata incomplete</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.</obo:IAO_0000115>
<rdfs:label xml:lang="en">metadata incomplete</rdfs:label>
</owl:Thing>
<!-- http://purl.obolibrary.org/obo/IAO_0000124 -->
<owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000124">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">uncurated</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Nothing done yet beyond assigning a unique class ID and proposing a preferred term.</obo:IAO_0000115>
<rdfs:label xml:lang="en">uncurated</rdfs:label>
</owl:Thing>
<!-- http://purl.obolibrary.org/obo/IAO_0000125 -->
<owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000125">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">pending final vetting</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.</obo:IAO_0000115>
<rdfs:label xml:lang="en">pending final vetting</rdfs:label>
</owl:Thing>
<!-- http://purl.obolibrary.org/obo/IAO_0000224 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000224">
<obo:IAO_0000115 xml:lang="en">Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label xml:lang="en">obsolete_core</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000226 -->
<owl:Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000226">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">placeholder removed</obo:IAO_0000111>
<rdfs:label xml:lang="en">placeholder removed</rdfs:label>
</owl:Thing>
<!-- http://purl.obolibrary.org/obo/IAO_0000227 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000227">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">terms merged</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">An editor note should explain what were the merged terms and the reason for the merge.</obo:IAO_0000116>
<rdfs:label xml:lang="en">terms merged</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000228 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000228">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">term imported</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.</obo:IAO_0000116>
<rdfs:label xml:lang="en">term imported</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000229 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000229">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">term split</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.</obo:IAO_0000116>
<rdfs:label xml:lang="en">term split</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000230 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000230">
<obo:IAO_0000116 xml:lang="en">This is to be used if none of the existing instances cover the reason for obsolescence. An editor note should indicate this new reason.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">We expect to be able to mine these new reasons and add instances as required.</obo:IAO_0000116>
<rdfs:label xml:lang="en">obsolete_other</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000410 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000410">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
<obo:IAO_0000111 xml:lang="en">universal</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf</obo:IAO_0000119>
<rdfs:label xml:lang="en">universal</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000420 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000420">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
<obo:IAO_0000111 xml:lang="en">defined class</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">"definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">defined class</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000421 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000421">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
<obo:IAO_0000111 xml:lang="en">named class expression</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A named class expression is a logical expression that is given a name. The name can be used in place of the expression.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">named class expression</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000423 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000423">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">to be replaced with external ontology term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Terms with this status should eventually replaced with a term from another ontology.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">to be replaced with external ontology term</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000428 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000428">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">requires discussion</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">requires discussion</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/iao.owl -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/iao.owl"/>
<!-- http://purl.obolibrary.org/obo/obi.owl -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/obi.owl">
<protege:defaultLanguage>en</protege:defaultLanguage>
<obo:IAO_0000589 xml:lang="en">Ontology for Biomedical Investigations</obo:IAO_0000589>
<dc:contributor xml:lang="en">Advisors for this project come from the IFOMIS group, Saarbruecken and from the Co-ODE group in Manchester</dc:contributor>
<dc:creator xml:lang="en">Alan Ruttenberg</dc:creator>
<dc:creator xml:lang="en">Allyson Lister</dc:creator>
<dc:creator xml:lang="en">Barry Smith</dc:creator>
<dc:creator xml:lang="en">Bill Bug</dc:creator>
<dc:creator xml:lang="en">Bjoern Peters</dc:creator>
<dc:creator xml:lang="en">Carlo Torniai</dc:creator>
<dc:creator xml:lang="en">Chris Mungall</dc:creator>
<dc:creator xml:lang="en">Chris Stoeckert</dc:creator>
<dc:creator xml:lang="en">Chris Taylor</dc:creator>
<dc:creator xml:lang="en">Christian Bolling</dc:creator>
<dc:creator xml:lang="en">Cristian Cocos</dc:creator>
<dc:creator xml:lang="en">Daniel Rubin</dc:creator>
<dc:creator xml:lang="en">Daniel Schober</dc:creator>
<dc:creator xml:lang="en">Dawn Field</dc:creator>
<dc:creator xml:lang="en">Dirk Derom</dc:creator>
<dc:creator xml:lang="en">Elisabetta Manduchi</dc:creator>
<dc:creator xml:lang="en">Eric Deutsch</dc:creator>
<dc:creator xml:lang="en">Frank Gibson</dc:creator>
<dc:creator xml:lang="en">Gilberto Fragoso</dc:creator>
<dc:creator xml:lang="en">Helen C. Causton</dc:creator>
<dc:creator xml:lang="en">Helen Parkinson</dc:creator>
<dc:creator xml:lang="en">Holger Stenzhorn</dc:creator>
<dc:creator xml:lang="en">James A. Overton</dc:creator>
<dc:creator xml:lang="en">James Malone</dc:creator>
<dc:creator xml:lang="en">Jay Greenbaum</dc:creator>
<dc:creator xml:lang="en">Jeffrey Grethe</dc:creator>
<dc:creator xml:lang="en">Jennifer Fostel</dc:creator>
<dc:creator xml:lang="en">Jessica Turner</dc:creator>
<dc:creator xml:lang="en">Jie Zheng</dc:creator>
<dc:creator xml:lang="en">Joe White</dc:creator>
<dc:creator xml:lang="en">John Westbrook</dc:creator>
<dc:creator xml:lang="en">Kevin Clancy</dc:creator>
<dc:creator xml:lang="en">Larisa Soldatova</dc:creator>
<dc:creator xml:lang="en">Lawrence Hunter</dc:creator>
<dc:creator xml:lang="en">Liju Fan</dc:creator>
<dc:creator xml:lang="en">Luisa Montecchi</dc:creator>
<dc:creator xml:lang="en">Matthew Brush</dc:creator>
<dc:creator xml:lang="en">Matthew Pocock</dc:creator>
<dc:creator xml:lang="en">Melanie Courtot</dc:creator>
<dc:creator xml:lang="en">Melissa Haendel</dc:creator>
<dc:creator xml:lang="en">Mervi Heiskanen</dc:creator>
<dc:creator xml:lang="en">Monnie McGee</dc:creator>
<dc:creator xml:lang="en">Norman Morrison</dc:creator>
<dc:creator xml:lang="en">Philippe Rocca-Serra</dc:creator>
<dc:creator xml:lang="en">Phillip Lord</dc:creator>
<dc:creator xml:lang="en">Pierre Grenon</dc:creator>
<dc:creator xml:lang="en">Richard Bruskiewich</dc:creator>
<dc:creator xml:lang="en">Richard Scheuermann</dc:creator>
<dc:creator xml:lang="en">Robert Stevens</dc:creator>
<dc:creator xml:lang="en">Ryan R. Brinkman</dc:creator>
<dc:creator xml:lang="en">Stefan Wiemann</dc:creator>
<dc:creator xml:lang="en">Susanna-Assunta Sansone</dc:creator>
<dc:creator xml:lang="en">Tanya Gray</dc:creator>
<dc:creator xml:lang="en">Tina Hernandez-Boussard</dc:creator>
<dc:creator xml:lang="en">Trish Whetzel</dc:creator>
<dc:creator xml:lang="en">Yongqun He</dc:creator>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2009-07-31</dc:date>
<dc:description xml:lang="en">An ontology for representing biomedical investigations, including study designs, the collection and preparation of the targets of investigation, assays, instrumentation and reagents used, as well as the data generated and the types of analysis performed on the data to reach conclusions, and their documentation.</dc:description>
<dc:format xml:lang="en">OWL-DL</dc:format>
<dc:subject xml:lang="en">An ontology for the annotation of biomedical and functional genomics experiments.</dc:subject>
<terms:license>http://creativecommons.org/licenses/by/4.0/</terms:license>
<terms:title>Ontology for Biomedical Investigations</terms:title>
<rdfs:comment>Please cite the OBI consortium http://purl.obolibrary.org/obo/obi where traditional citation is called for. However it is adequate that individual terms be attributed simply by use of the identifying PURL for the term, in projects that refer to them.</rdfs:comment>
<owl:versionInfo>2025-01-09</owl:versionInfo>
</owl:NamedIndividual>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
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<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<rdf:Description>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
</rdf:Description>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotations
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<rdf:Description rdf:about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C70958">
<obo:ICO_0000091>C2348583</obo:ICO_0000091>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/GAZ_00000448">
<obo:IAO_0000115>A reference to a place on the Earth, by its name or by its geographical location.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/gaz.owl"/>
<oboInOwl:id>GAZ:00000448</oboInOwl:id>
<rdfs:label>geographic location</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/bfo.owl">
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: BFO does not claim to provide complete coverage of entities of all types. It seeks only to provide coverage of those entities studied by empirical science together with those entities which affect or are involved in human activities such as data processing and planning - coverage that is sufficiently broad to provide assistance to those engaged in building domain ontologies for purposes of data annotation.</obo:IAO_0000116>
<obo:IAO_0000116>BFO 2 Reference: BFO's treatment of continuants and occurrents - as also its treatment of regions, rests on a dichotomy between space and time, and on the view that there are two perspectives on reality - earlier called the 'SNAP' and 'SPAN' perspectives, both of which are essential to the non-reductionist representation of reality as we understand it from the best available science.</obo:IAO_0000116>
<obo:IAO_0000116>BFO 2 Reference: For both terms and relational expressions in BFO, we distinguish between primitive and defined. 'Entity' is an example of a primitive term. Primitive terms in a highest-level ontology such as BFO are terms that are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms.</obo:IAO_0000116>
<dc:contributor>Alan Ruttenberg</dc:contributor>
<dc:contributor>Albert Goldfain</dc:contributor>
<dc:contributor>Barry Smith</dc:contributor>
<dc:contributor>Bill Duncan</dc:contributor>
<dc:contributor>Bjoern Peters</dc:contributor>
<dc:contributor>Chris Mungall</dc:contributor>
<dc:contributor>David Osumi-Sutherland</dc:contributor>
<dc:contributor>Fabian Neuhaus</dc:contributor>
<dc:contributor>Holger Stenzhorn</dc:contributor>
<dc:contributor>James A. Overton</dc:contributor>
<dc:contributor>Janna Hastings</dc:contributor>
<dc:contributor>Jie Zheng</dc:contributor>
<dc:contributor>Jonathan Bona</dc:contributor>
<dc:contributor>Larry Hunter</dc:contributor>
<dc:contributor>Leonard Jacuzzo</dc:contributor>
<dc:contributor>Ludger Jansen</dc:contributor>
<dc:contributor>Mark Ressler</dc:contributor>
<dc:contributor>Mathias Brochhausen</dc:contributor>
<dc:contributor>Mauricio Almeida</dc:contributor>
<dc:contributor>Melanie Courtot</dc:contributor>
<dc:contributor>Pierre Grenon</dc:contributor>
<dc:contributor>Randall Dipert</dc:contributor>
<dc:contributor>Ron Rudnicki</dc:contributor>
<dc:contributor>Selja Seppälä</dc:contributor>
<dc:contributor>Stefan Schulz</dc:contributor>
<dc:contributor>Thomas Bittner</dc:contributor>
<dc:contributor>Werner Ceusters</dc:contributor>
<dc:contributor>Yongqun "Oliver" He</dc:contributor>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<rdfs:comment xml:lang="en">Please see the project site https://github.com/BFO-ontology/BFO, the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel, the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx. This ontology is generated from a specification at https://github.com/BFO-ontology/BFO/tree/master/src/ontology/owl-group/specification/ and with the code that generates the OWL version in https://github.com/BFO-ontology/BFO/tree/master/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif.</rdfs:comment>
<rdfs:comment xml:lang="en">The BSD license on the BFO project site refers to code used to build BFO.</rdfs:comment>
<rdfs:comment>This BFO 2.0 version represents a major update to BFO and is not strictly backwards compatible with BFO 1.1. The previous OWL version of BFO, version 1.1.1 will remain available at http://ifomis.org/bfo/1.1 and will no longer be updated. The BFO 2.0 OWL is a classes-only specification. The incorporation of core relations has been held over for a later version.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo/dev/bfo.clif"/>
<rdfs:isDefinedBy rdf:resource="https://github.com/BFO-ontology/BFO/tree/master/src/ontology/owl-group/specification/"/>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-devel"/>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-discuss"/>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-owl-devel"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/bfo/dev/owl"/>
<rdfs:seeAlso rdf:resource="https://github.com/BFO-ontology/BFO/tree/master/src/tools/"/>
<foaf:homepage rdf:resource="http://basic-formal-ontology.org/"/>
<foaf:homepage rdf:resource="http://ifomis.org/bfo"/>
<foaf:homepage rdf:resource="https://github.com/BFO-ontology/BFO"/>
<foaf:mbox rdf:resource="mailto:bfo-owl-devel@googlegroups.com"/>
</rdf:Description>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// General axioms
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AllDifferent"/>
<owl:distinctMembers rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000120"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000121"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000122"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000123"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000124"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000125"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000423"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000428"/>
</owl:distinctMembers>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AllDifferent"/>
<owl:distinctMembers rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000227"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000228"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000229"/>
</owl:distinctMembers>
</rdf:Description>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Rules
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<rdf:Description rdf:about="urn:swrl:var#e">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl:var#d">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<swrl:argument1 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000091"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</swrl:head>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<swrl:argument1 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</swrl:head>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<swrl:argument1 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</swrl:head>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<swrl:argument1 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</swrl:head>
</rdf:Description>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.29.2024-05-13T12:11:03Z) https://github.com/owlcs/owlapi -->