pattern_name: infectious_disease_by_agent

pattern_iri: http://purl.obolibrary.org/obo/mondo/patterns/infectious_disease_by_agent.yaml

description: 'Infectious diseases can be classified by the infectious agent, such
  as bacteria, coronavirus, etc, that causes the disease.

  Examples: [COVID-19](http://purl.obolibrary.org/obo/MONDO_0100096), [cholera](http://purl.obolibrary.org/obo/MONDO_0015766)'

contributors:
- https://orcid.org/0000-0002-6601-2165
- https://orcid.org/0000-0001-5208-3432
- https://orcid.org/0000-0002-1780-9872

classes:
  disease: MONDO:0000001
  organism: NCBITaxon:1
  infectious disease: MONDO:0005550

relations:
  disease has infectious agent: RO:0014001

annotationProperties:
  exact_synonym: oio:hasExactSynonym
  related_synonym: oio:hasRelatedSynonym

vars:
  agent: '''organism'''

name:
  text: '%s infectious disease'
  vars:
  - agent

annotations:
- annotationProperty: exact_synonym
  text: infection due to %s
  vars:
  - agent
- annotationProperty: exact_synonym
  text: '%s infection'
  vars:
  - agent

def:
  text: A disease caused by infection with %s.
  vars:
  - agent

equivalentTo:
  text: '''infectious disease'' and ''disease has infectious agent'' some %s'
  vars:
  - agent