format-version: 1.2 data-version: releases/2023-07-04 treat-xrefs-as-equivalent: GO ontology: nbo property_value: http://purl.org/dc/terms/description "An ontology of human and animal behaviours." xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ property_value: http://purl.org/dc/terms/title "Neuro Behaviour Ontology" xsd:string property_value: owl:versionInfo "2023-07-04" xsd:string [Term] id: BFO:0000001 name: entity property_value: BFO:0000179 "entity" xsd:string property_value: BFO:0000180 "Entity" xsd:string property_value: IAO:0000112 "Julius Caesar" xsd:string property_value: IAO:0000112 "the Second World War" xsd:string property_value: IAO:0000112 "Verdi’s Requiem" xsd:string property_value: IAO:0000112 "your body mass index" xsd:string property_value: IAO:0000116 "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81" xsd:string property_value: IAO:0000116 "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000004", comment="per discussion with Barry Smith", http://www.w3.org/2000/01/rdf-schema#seeAlso="http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"} property_value: IAO:0000600 "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/001-001"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000002 name: continuant def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." [] is_a: BFO:0000001 ! entity disjoint_from: BFO:0000003 ! occurrent relationship: BFO:0000050 BFO:0000002 {all_only="true"} ! part of continuant property_value: BFO:0000179 "continuant" xsd:string property_value: BFO:0000180 "Continuant" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240" xsd:string property_value: IAO:0000116 "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000007"} property_value: IAO:0000600 "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"} property_value: IAO:0000601 "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"} property_value: IAO:0000601 "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"} property_value: IAO:0000601 "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"} property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"} property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"} property_value: IAO:0000602 "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"} property_value: IAO:0000602 "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000003 name: occurrent def: "An entity that has temporal parts and that happens, unfolds or develops through time." [] is_a: BFO:0000001 ! entity relationship: BFO:0000050 BFO:0000003 {all_only="true"} ! part of occurrent property_value: BFO:0000179 "occurrent" xsd:string property_value: BFO:0000180 "Occurrent" xsd:string property_value: IAO:0000116 "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region" xsd:string property_value: IAO:0000116 "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players." xsd:string property_value: IAO:0000116 "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000006", comment="per discussion with Barry Smith"} property_value: IAO:0000116 "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000012"} property_value: IAO:0000600 "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/077-002"} property_value: IAO:0000601 "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"} property_value: IAO:0000601 "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"} property_value: IAO:0000602 "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"} property_value: IAO:0000602 "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000004 name: independent continuant def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." [] def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} is_a: BFO:0000002 ! continuant disjoint_from: BFO:0000020 ! specifically dependent continuant relationship: BFO:0000050 BFO:0000004 {all_only="true"} ! part of independent continuant property_value: BFO:0000179 "ic" xsd:string property_value: BFO:0000180 "IndependentContinuant" xsd:string property_value: IAO:0000112 "a chair" xsd:string property_value: IAO:0000112 "a heart" xsd:string property_value: IAO:0000112 "a leg" xsd:string property_value: IAO:0000112 "a molecule" xsd:string property_value: IAO:0000112 "a spatial region" xsd:string property_value: IAO:0000112 "an atom" xsd:string property_value: IAO:0000112 "an orchestra." xsd:string property_value: IAO:0000112 "an organism" xsd:string property_value: IAO:0000112 "the bottom right portion of a human torso" xsd:string property_value: IAO:0000112 "the interior of your mouth" xsd:string property_value: IAO:0000601 "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"} property_value: IAO:0000601 "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"} property_value: IAO:0000602 "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"} property_value: IAO:0000602 "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"} property_value: IAO:0000602 "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000006 name: spatial region is_a: BFO:0000141 ! immaterial entity property_value: BFO:0000179 "s-region" xsd:string property_value: BFO:0000180 "SpatialRegion" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Spatial regions do not participate in processes." xsd:string property_value: IAO:0000116 "Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000002", comment="per discussion with Barry Smith"} property_value: IAO:0000600 "A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/035-001"} property_value: IAO:0000601 "All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/036-001"} property_value: IAO:0000602 "(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/036-001"} property_value: IAO:0000602 "(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/035-001"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000015 name: process def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} is_a: BFO:0000003 ! occurrent relationship: BFO:0000050 BFO:0000015 {all_only="true"} ! part of process property_value: BFO:0000179 "process" xsd:string property_value: BFO:0000180 "Process" xsd:string property_value: IAO:0000112 "a process of cell-division, \\ a beating of the heart" xsd:string property_value: IAO:0000112 "a process of meiosis" xsd:string property_value: IAO:0000112 "a process of sleeping" xsd:string property_value: IAO:0000112 "the course of a disease" xsd:string property_value: IAO:0000112 "the flight of a bird" xsd:string property_value: IAO:0000112 "the life of an organism" xsd:string property_value: IAO:0000112 "your process of aging." xsd:string property_value: IAO:0000116 "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)" xsd:string property_value: IAO:0000602 "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000016 name: disposition is_a: BFO:0000017 ! realizable entity disjoint_from: BFO:0000023 ! role property_value: BFO:0000179 "disposition" xsd:string property_value: BFO:0000180 "Disposition" xsd:string property_value: IAO:0000112 "an atom of element X has the disposition to decay to an atom of element Y" xsd:string property_value: IAO:0000112 "certain people have a predisposition to colon cancer" xsd:string property_value: IAO:0000112 "children are innately disposed to categorize objects in certain ways." xsd:string property_value: IAO:0000112 "the cell wall is disposed to filter chemicals in endocytosis and exocytosis" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type." xsd:string property_value: IAO:0000600 "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/062-002"} property_value: IAO:0000601 "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/063-002"} property_value: IAO:0000602 "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/063-002"} property_value: IAO:0000602 "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/062-002"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000017 name: realizable name: realizable entity def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." [] is_a: BFO:0000020 ! specifically dependent continuant is_a: PATO:0000001 ! characteristic disjoint_from: BFO:0000019 ! quality relationship: BFO:0000050 BFO:0000017 {all_only="true"} ! part of realizable entity property_value: BFO:0000179 "realizable" xsd:string property_value: BFO:0000180 "RealizableEntity" xsd:string property_value: IAO:0000112 "the disposition of this piece of metal to conduct electricity." xsd:string property_value: IAO:0000112 "the disposition of your blood to coagulate" xsd:string property_value: IAO:0000112 "the function of your reproductive organs" xsd:string property_value: IAO:0000112 "the role of being a doctor" xsd:string property_value: IAO:0000112 "the role of this boundary to delineate where Utah and Colorado meet" xsd:string property_value: IAO:0000600 "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/058-002"} property_value: IAO:0000601 "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/060-002"} property_value: IAO:0000602 "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/060-002"} property_value: IAO:0000602 "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/058-002"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000019 name: quality is_a: BFO:0000020 ! specifically dependent continuant relationship: BFO:0000050 BFO:0000019 {all_only="true"} ! part of quality property_value: BFO:0000179 "quality" xsd:string property_value: BFO:0000180 "Quality" xsd:string property_value: IAO:0000112 "the ambient temperature of this portion of air" xsd:string property_value: IAO:0000112 "the color of a tomato" xsd:string property_value: IAO:0000112 "the length of the circumference of your waist" xsd:string property_value: IAO:0000112 "the mass of this piece of gold." xsd:string property_value: IAO:0000112 "the shape of your nose" xsd:string property_value: IAO:0000112 "the shape of your nostril" xsd:string property_value: IAO:0000600 "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/055-001"} property_value: IAO:0000601 "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/105-001"} property_value: IAO:0000602 "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/105-001"} property_value: IAO:0000602 "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/055-001"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000020 name: specifically dependent continuant def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." [] def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"} is_a: BFO:0000002 ! continuant relationship: BFO:0000050 BFO:0000020 {all_only="true"} ! part of specifically dependent continuant property_value: BFO:0000179 "sdc" xsd:string property_value: BFO:0000180 "SpecificallyDependentContinuant" xsd:string property_value: IAO:0000112 "of one-sided specifically dependent continuants: the mass of this tomato" xsd:string property_value: IAO:0000112 "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates." xsd:string property_value: IAO:0000112 "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key" xsd:string property_value: IAO:0000112 "the disposition of this fish to decay" xsd:string property_value: IAO:0000112 "the function of this heart: to pump blood" xsd:string property_value: IAO:0000112 "the mutual dependence of proton donors and acceptors in chemical reactions [79" xsd:string property_value: IAO:0000112 "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction" xsd:string property_value: IAO:0000112 "the pink color of a medium rare piece of grilled filet mignon at its center" xsd:string property_value: IAO:0000112 "the role of being a doctor" xsd:string property_value: IAO:0000112 "the shape of this hole." xsd:string property_value: IAO:0000112 "the smell of this portion of mozzarella" xsd:string property_value: IAO:0000116 "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000005", comment="per discussion with Barry Smith"} property_value: IAO:0000602 "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000023 name: role def: "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts." [] is_a: BFO:0000017 ! realizable entity property_value: BFO:0000179 "role" xsd:string property_value: BFO:0000180 "Role" xsd:string property_value: IAO:0000112 "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married." xsd:string property_value: IAO:0000112 "the priest role" xsd:string property_value: IAO:0000112 "the role of a boundary to demarcate two neighboring administrative territories" xsd:string property_value: IAO:0000112 "the role of a building in serving as a military target" xsd:string property_value: IAO:0000112 "the role of a stone in marking a property boundary" xsd:string property_value: IAO:0000112 "the role of subject in a clinical trial" xsd:string property_value: IAO:0000112 "the student role" xsd:string property_value: IAO:0000116 "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives." xsd:string property_value: IAO:0000600 "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/061-001"} property_value: IAO:0000602 "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/061-001"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000034 name: function is_a: BFO:0000016 ! disposition property_value: BFO:0000179 "function" xsd:string property_value: BFO:0000180 "Function" xsd:string property_value: IAO:0000112 "the function of a hammer to drive in nails" xsd:string property_value: IAO:0000112 "the function of a heart pacemaker to regulate the beating of a heart through electricity" xsd:string property_value: IAO:0000112 "the function of amylase in saliva to break down starch into sugar" xsd:string property_value: IAO:0000116 "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc." xsd:string property_value: IAO:0000600 "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/064-001"} property_value: IAO:0000602 "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/064-001"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000040 name: material entity def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] is_a: BFO:0000004 ! independent continuant disjoint_from: BFO:0000141 ! immaterial entity property_value: BFO:0000179 "material" xsd:string property_value: BFO:0000180 "MaterialEntity" xsd:string property_value: IAO:0000112 "a flame" xsd:string property_value: IAO:0000112 "a forest fire" xsd:string property_value: IAO:0000112 "a human being" xsd:string property_value: IAO:0000112 "a hurricane" xsd:string property_value: IAO:0000112 "a photon" xsd:string property_value: IAO:0000112 "a puff of smoke" xsd:string property_value: IAO:0000112 "a sea wave" xsd:string property_value: IAO:0000112 "a tornado" xsd:string property_value: IAO:0000112 "an aggregate of human beings." xsd:string property_value: IAO:0000112 "an energy wave" xsd:string property_value: IAO:0000112 "an epidemic" xsd:string property_value: IAO:0000112 "the undetached arm of a human being" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity." xsd:string property_value: IAO:0000116 "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here." xsd:string property_value: IAO:0000600 "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"} property_value: IAO:0000601 "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"} property_value: IAO:0000601 "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"} property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"} property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"} property_value: IAO:0000602 "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] " xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"} property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: BFO:0000141 name: immaterial entity is_a: BFO:0000004 ! independent continuant property_value: BFO:0000179 "immaterial" xsd:string property_value: BFO:0000180 "ImmaterialEntity" xsd:string property_value: IAO:0000116 "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10" xsd:string property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Term] id: CHEBI:10545 name: electron name: nucleic acid polymer def: "Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV." [] is_a: CHEBI:36338 ! lepton is_a: COB:0000013 ! molecular entity property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "0.000548579903" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "0.0" xsd:string [Term] id: CHEBI:131604 name: Mycoplasma genitalium metabolite def: "Any bacterial metabolite produced during a metabolic reaction in Mycoplasma genitalium." [] is_a: CHEBI:76969 ! bacterial metabolite [Term] id: CHEBI:131927 name: dicarboxylic acids and O-substituted derivatives def: "A class of carbonyl compound encompassing dicarboxylic acids and any derivatives obtained by substitution of either one or both of the carboxy hydrogens." [] is_a: CHEBI:36586 ! carbonyl compound [Term] id: CHEBI:132153 name: hyaluronate def: "A carbohydrate acid derivative anion obtained by deprotonation of the carboxy groups of hyaluronic acid; major species at pH 7.3." [] is_a: CHEBI:61469 ! polyanionic polymer is_a: CHEBI:63551 ! carbohydrate acid derivative anion relationship: is_conjugate_base_of CHEBI:16336 ! hyaluronic acid property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "(C14H20NO11)n.H2O" xsd:string [Term] id: CHEBI:134179 name: volatile organic compound def: "Any organic compound having an initial boiling point less than or equal to 250 degreeC (482 degreeF) measured at a standard atmospheric pressure of 101.3 kPa." [] is_a: CHEBI:72695 ! organic molecule [Term] id: CHEBI:137982 name: tertiary ammonium ion def: "An organic cation obtained by protonation of the amino group of any tertiary amino compound." [] is_a: CHEBI:25697 ! organic cation relationship: is_conjugate_acid_of CHEBI:50996 ! tertiary amino compound property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "HNR3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "15.015" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "15.01090" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[NH+](*)(*)*" xsd:string [Term] id: CHEBI:138000 name: 3-(1-methylpyrrolidin-2-yl)pyridine def: "An N-alkylpyrrolidine that consists of N-methylpyrrolidine bearing a pyridin-3-yl substituent at position 2." [] is_a: CHEBI:26416 ! pyridine alkaloid is_a: CHEBI:26456 ! pyrrolidine alkaloid is_a: CHEBI:46775 ! N-alkylpyrrolidine property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C10H14N2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "SNICXCGAKADSCV-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "162.232" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "162.11570" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C=1C=C(C2N(CCC2)C)C=NC1" xsd:string [Term] id: CHEBI:138103 name: inorganic acid def: "A Bronsted acid derived from one or more inorganic compounds. Inorganic acids (also known as mineral acids) form hydrons and conjugate base ions when dissolved in water." [] is_a: CHEBI:39141 ! Bronsted acid [Term] id: CHEBI:138675 name: gas molecular entity def: "Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa)." [] is_a: CHEBI:33579 ! main group molecular entity [Term] id: CHEBI:13941 name: carbamate is_a: CHEBI:37022 ! amino-acid anion relationship: is_conjugate_base_of CHEBI:28616 ! carbamic acid property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CH2NO2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "KXDHJXZQYSOELW-UHFFFAOYSA-M" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "60.03212" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "60.00910" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "NC([O-])=O" xsd:string [Term] id: CHEBI:142163 name: 24G7 epitope def: "An antigenic epitope recognized by an anti-bilirubin monoclonal antibody designated 24G7. A substructure of bilirubin IXalpha, it is the region containing the oxo group at C-1, the methyl group at C-2, C-(4, 5, 6, 9), and N-21 and -22." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:24433 ! group relationship: RO:0000087 CHEBI:53000 ! has role epitope property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C7H6N2O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "134.136" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "134.04801" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C(=CC(NC(=*)*)=*)(NC(C(C)=*)=O)*" xsd:string [Term] id: CHEBI:15339 name: acceptor def: "A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity." [] is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:15377 name: water def: "An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms" [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33693 ! oxygen hydride is_a: CHEBI:37176 ! mononuclear parent hydride is_a: CHEBI:52625 ! inorganic hydroxy compound relationship: is_conjugate_acid_of CHEBI:16234 ! hydroxide relationship: is_conjugate_base_of CHEBI:29412 ! oxonium relationship: RO:0000087 CHEBI:48360 ! has role amphiprotic solvent relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite relationship: RO:0000087 CHEBI:76413 ! has role greenhouse gas relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "H2O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H2O/h1H2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "XLYOFNOQVPJJNP-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "18.01530" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "18.01056" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H]O[H]" xsd:string [Term] id: CHEBI:15734 name: primary alcohol def: "A primary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it." [] is_a: CHEBI:30879 ! alcohol property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CH3OR" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "31.034" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "31.01839" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "*C(O)([H])[H]" xsd:string [Term] id: CHEBI:15841 name: polypeptide def: "A peptide containing ten or more amino acid residues." [] is_a: CHEBI:16670 ! peptide is_a: CHEBI:33839 ! macromolecule property_value: http://purl.obolibrary.org/obo/chebi/formula "C4H6N2O3R2(C2H2NOR)n" xsd:string [Term] id: CHEBI:16134 name: ammonia def: "An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:138675 ! gas molecular entity is_a: CHEBI:35107 ! azane is_a: CHEBI:37176 ! mononuclear parent hydride relationship: is_conjugate_acid_of CHEBI:29337 ! azanide relationship: is_conjugate_base_of CHEBI:28938 ! ammonium relationship: RO:0000087 CHEBI:50910 ! has role neurotoxin relationship: RO:0000087 CHEBI:59740 ! has role nucleophilic reagent relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite relationship: RO:0000087 CHEBI:77941 ! has role EC 3.5.1.4 (amidase) inhibitor relationship: RO:0000087 CHEBI:78433 ! has role refrigerant property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "H3N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H3N/h1H3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QGZKDVFQNNGYKY-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "17.03056" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "17.02655" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H]N([H])[H]" xsd:string [Term] id: CHEBI:16189 name: sulfate def: "A sulfur oxoanion obtained by deprotonation of both OH groups of sulfuric acid." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33482 ! sulfur oxoanion is_a: CHEBI:48154 ! sulfur oxide is_a: CHEBI:79388 ! divalent inorganic anion relationship: is_conjugate_base_of CHEBI:45696 ! hydrogensulfate relationship: RO:0000087 CHEBI:23357 ! has role cofactor relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "-2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "O4S" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QAOWNCQODCNURD-UHFFFAOYSA-L" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "96.06360" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "95.95283" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]S([O-])(=O)=O" xsd:string [Term] id: CHEBI:16234 name: hydroxide is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33693 ! oxygen hydride relationship: is_conjugate_base_of CHEBI:15377 ! water relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "HO" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H2O/h1H2/p-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "XLYOFNOQVPJJNP-UHFFFAOYSA-M" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "17.00734" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "17.00329" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-][H]" xsd:string [Term] id: CHEBI:16236 name: ethanol def: "A primary alcohol that is ethane in which one of the hydrogens is substituted by a hydroxy group." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:134179 ! volatile organic compound is_a: CHEBI:23982 ! ethanols is_a: CHEBI:50584 ! alkyl alcohol relationship: is_conjugate_acid_of CHEBI:52092 ! ethoxide relationship: RO:0000087 CHEBI:35488 ! has role central nervous system depressant relationship: RO:0000087 CHEBI:48218 ! has role antiseptic drug relationship: RO:0000087 CHEBI:48219 ! has role disinfectant relationship: RO:0000087 CHEBI:48354 ! has role polar solvent relationship: RO:0000087 CHEBI:50905 ! has role teratogenic agent relationship: RO:0000087 CHEBI:50910 ! has role neurotoxin relationship: RO:0000087 CHEBI:60643 ! has role NMDA receptor antagonist relationship: RO:0000087 CHEBI:64018 ! has role protein kinase C agonist relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C2H6O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "LFQSCWFLJHTTHZ-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "46.06844" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "46.04186" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "CCO" xsd:string [Term] id: CHEBI:16336 name: hyaluronic acid def: "A mucopolysaccharide composed of N-acetylglucosamine and glucuronic acid subunits. It is found in the connective tissues of vertebrates. A principal constituent of the extracellular matrix (ECM), it mediates the growth and metastasis of tumour cells." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:37395 ! mucopolysaccharide is_a: CHEBI:72813 ! exopolysaccharide relationship: is_conjugate_acid_of CHEBI:132153 ! hyaluronate relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "(C14H21NO12)n" xsd:string [Term] id: CHEBI:16541 name: protein polypeptide chain def: "A naturally occurring polypeptide synthesized at the ribosome." [] is_a: CHEBI:15841 ! polypeptide relationship: BFO:0000051 CHEBI:33700 ! has part proteinogenic amino-acid residue [Term] id: CHEBI:16646 name: carbohydrate def: "Any member of the class of organooxygen compounds that is a polyhydroxy-aldehyde or -ketone or a lactol resulting from their intramolecular condensation (monosaccharides); substances derived from these by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom; and polymeric products arising by intermolecular acetal formation between two or more such molecules (disaccharides, polysaccharides and oligosaccharides). Carbohydrates contain only carbon, hydrogen and oxygen atoms; prior to any oxidation or reduction, most have the empirical formula Cm(H2O)n. Compounds obtained from carbohydrates by substitution, etc., are known as carbohydrate derivatives and may contain other elements. Cyclitols are generally not regarded as carbohydrates." [] is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives [Term] id: CHEBI:16670 name: peptide def: "Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc." [] is_a: CHEBI:37622 ! carboxamide is_a: CHEBI:50047 ! organic amino compound relationship: BFO:0000051 CHEBI:33708 ! has part amino-acid residue relationship: is_tautomer_of CHEBI:60466 ! peptide zwitterion property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "(C2H2NOR)nC2H3NOR" xsd:string [Term] id: CHEBI:167559 name: glycan def: "Any oligosaccharide, polysaccharide or their derivatives consisting of monosaccharides or monosaccharide derivatives linked by glycosidic bonds. See also http://www.ontobee.org/ontology/GNO?iri=http://purl.obolibrary.org/obo/GNO_00000001." [] is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives [Term] id: CHEBI:16990 name: bilirubin IXalpha def: "A member of the class of biladienes that is a linear tetrapyrrole with the dipyrrole units being of both exovinyl and endovinyl type. A product of heme degradation, it is produced in the reticuloendothelial system by the reduction of biliverdin and transported to the liver as a complex with serum albumin." [] is_a: CHEBI:35692 ! dicarboxylic acid is_a: CHEBI:36735 ! biladienes relationship: BFO:0000051 CHEBI:142163 ! has part 24G7 epitope relationship: is_conjugate_acid_of CHEBI:57977 ! bilirubin(2-) relationship: RO:0000087 CHEBI:22586 ! has role antioxidant relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C33H36N4O6" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-14,34-35H,1-2,9-12,15H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14-" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "BPYKTIZUTYGOLE-IFADSCNNSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "584.673" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "584.26348" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "CC1=C(C=C)\\C(NC1=O)=C\\C1=C(C)C(CCC(O)=O)=C(CC2=C(CCC(O)=O)C(C)=C(N2)\\C=C2/NC(=O)C(C=C)=C2C)N1" xsd:string [Term] id: CHEBI:17089 name: glycoprotein def: "A compound in which a carbohydrate component is covalently bound to a protein component." [] is_a: CHEBI:33837 ! conjugated protein is_a: CHEBI:63299 ! carbohydrate derivative [Term] id: CHEBI:17303 name: morphine def: "A morphinane alkaloid that is a highly potent opiate analgesic psychoactive drug. Morphine acts directly on the central nervous system (CNS) to relieve pain but has a high potential for addiction, with tolerance and both physical and psychological dependence developing rapidly. Morphine is the most abundant opiate found in Papaver somniferum (the opium poppy)." [] is_a: CHEBI:25418 ! morphinane alkaloid is_a: CHEBI:38164 ! organic heteropentacyclic compound is_a: CHEBI:50996 ! tertiary amino compound relationship: has_parent_hydride CHEBI:35649 ! morphinan relationship: is_conjugate_base_of CHEBI:58097 ! morphine(1+) relationship: RO:0000087 CHEBI:176497 ! has role geroprotector relationship: RO:0000087 CHEBI:35482 ! has role opioid analgesic relationship: RO:0000087 CHEBI:35620 ! has role vasodilator agent relationship: RO:0000087 CHEBI:35703 ! has role xenobiotic relationship: RO:0000087 CHEBI:38867 ! has role anaesthetic relationship: RO:0000087 CHEBI:55322 ! has role mu-opioid receptor agonist relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite relationship: RO:0000087 CHEBI:78298 ! has role environmental contaminant relationship: RO:0000087 CHEBI:88188 ! has role drug allergen property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C17H19NO3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C17H19NO3/c1-18-7-6-17-10-3-5-13(20)16(17)21-15-12(19)4-2-9(14(15)17)8-11(10)18/h2-5,10-11,13,16,19-20H,6-8H2,1H3/t10-,11+,13-,16-,17-/m0/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "BQJCRHHNABKAKU-KBQPJGBKSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "285.33770" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "285.13649" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][C@]12C=C[C@H](O)[C@@H]3Oc4c(O)ccc5C[C@H]1N(C)CC[C@@]23c45" xsd:string [Term] id: CHEBI:176497 name: geroprotector def: "Any compound that supports healthy aging, slows the biological aging process, or extends lifespan." [] is_a: CHEBI:50267 ! protective agent [Term] id: CHEBI:17688 name: (S)-nicotine def: "A 3-(1-methylpyrrolidin-2-yl)pyridine in which the chiral centre has S-configuration. The naturally occurring and most active enantiomer of nicotine, isolated from Nicotiana tabacum." [] is_a: CHEBI:138000 ! 3-(1-methylpyrrolidin-2-yl)pyridine relationship: is_conjugate_base_of CHEBI:59806 ! (S)-nicotinium(1+) relationship: is_enantiomer_of CHEBI:39162 ! (R)-nicotine relationship: RO:0000087 CHEBI:22917 ! has role phytogenic insecticide relationship: RO:0000087 CHEBI:35474 ! has role anxiolytic drug relationship: RO:0000087 CHEBI:35703 ! has role xenobiotic relationship: RO:0000087 CHEBI:47958 ! has role nicotinic acetylcholine receptor agonist relationship: RO:0000087 CHEBI:49110 ! has role peripheral nervous system drug relationship: RO:0000087 CHEBI:50846 ! has role immunomodulator relationship: RO:0000087 CHEBI:50905 ! has role teratogenic agent relationship: RO:0000087 CHEBI:50910 ! has role neurotoxin relationship: RO:0000087 CHEBI:52290 ! has role mitogen relationship: RO:0000087 CHEBI:59163 ! has role biomarker relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C10H14N2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/t10-/m0/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "SNICXCGAKADSCV-JTQLQIEISA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "162.236" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "162.11570" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][C@]1(CCCN1C)C1=CC=CN=C1" xsd:string [Term] id: CHEBI:17790 name: methanol def: "The primary alcohol that is the simplest aliphatic alcohol, comprising a methyl and an alcohol group." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:134179 ! volatile organic compound is_a: CHEBI:15734 ! primary alcohol is_a: CHEBI:50584 ! alkyl alcohol is_a: CHEBI:64708 ! one-carbon compound relationship: is_conjugate_acid_of CHEBI:52090 ! methoxide relationship: RO:0000087 CHEBI:131604 ! has role Mycoplasma genitalium metabolite relationship: RO:0000087 CHEBI:33292 ! has role fuel relationship: RO:0000087 CHEBI:48360 ! has role amphiprotic solvent relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CH4O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/CH4O/c1-2/h2H,1H3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "OKKJLVBELUTLKV-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "32.04186" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "32.02621" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "CO" xsd:string [Term] id: CHEBI:17891 name: donor def: "A molecular entity that can transfer (\"donate\") an electron, a pair of electrons, an atom or a group to another molecular entity." [] is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:18059 name: lipid def: "'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids." [] is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:18085 name: glycosaminoglycan def: "Any polysaccharide containing a substantial proportion of aminomonosaccharide residues." [] is_a: CHEBI:22506 ! aminoglycan [Term] id: CHEBI:18154 name: polysaccharide def: "A biomacromolecule consisting of large numbers of monosaccharide residues linked glycosidically. This term is commonly used only for those containing more than ten monosaccharide residues." [] is_a: CHEBI:16646 ! carbohydrate is_a: CHEBI:167559 ! glycan is_a: CHEBI:33694 ! biomacromolecule [Term] id: CHEBI:18723 name: nicotine def: "A racemate composed of equimolar amounts of (R)- and (S)-nicotine." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:60911 ! racemate relationship: BFO:0000051 CHEBI:17688 ! has part (S)-nicotine relationship: BFO:0000051 CHEBI:39162 ! has part (R)-nicotine relationship: RO:0000087 CHEBI:35474 ! has role anxiolytic drug relationship: RO:0000087 CHEBI:47958 ! has role nicotinic acetylcholine receptor agonist relationship: RO:0000087 CHEBI:49110 ! has role peripheral nervous system drug relationship: RO:0000087 CHEBI:50846 ! has role immunomodulator relationship: RO:0000087 CHEBI:50905 ! has role teratogenic agent relationship: RO:0000087 CHEBI:50910 ! has role neurotoxin relationship: RO:0000087 CHEBI:52290 ! has role mitogen relationship: RO:0000087 CHEBI:59163 ! has role biomarker [Term] id: CHEBI:22221 name: acyl group def: "An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids." [] is_a: CHEBI:33247 ! organic group [Term] id: CHEBI:22314 name: alkali metal atom is_a: CHEBI:33318 ! main group element atom is_a: CHEBI:33521 ! metal atom is_a: CHEBI:33559 ! s-block element atom [Term] id: CHEBI:22315 name: alkaloid def: "Any of the naturally occurring, basic nitrogen compounds (mostly heterocyclic) occurring mostly in the plant kingdom, but also found in bacteria, fungi, and animals. By extension, certain neutral compounds biogenetically related to basic alkaloids are also classed as alkaloids. Amino acids, peptides, proteins, nucleotides, nucleic acids, amino sugars and antibiotics are not normally regarded as alkaloids. Compounds in which the nitrogen is exocyclic (dopamine, mescaline, serotonin, etc.) are usually classed as amines rather than alkaloids." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35352 ! organonitrogen compound relationship: RO:0000087 CHEBI:25212 ! has role metabolite [Term] id: CHEBI:22506 name: aminoglycan is_a: CHEBI:35352 ! organonitrogen compound is_a: CHEBI:65212 ! polysaccharide derivative [Term] id: CHEBI:22563 name: anion def: "A monoatomic or polyatomic species having one or more elementary charges of the electron." [] is_a: CHEBI:24870 ! ion [Term] id: CHEBI:22586 name: antioxidant def: "A substance that opposes oxidation or inhibits reactions brought about by dioxygen or peroxides." [] is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:22695 name: base def: "A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base)." [] is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:22712 name: benzenes def: "Any benzenoid aromatic compound consisting of the benzene skeleton and its substituted derivatives." [] is_a: CHEBI:33836 ! benzenoid aromatic compound [Term] id: CHEBI:22723 name: benzoic acids def: "Any aromatic carboxylic acid that consists of benzene in which at least a single hydrogen has been substituted by a carboxy group." [] is_a: CHEBI:22712 ! benzenes is_a: CHEBI:33859 ! aromatic carboxylic acid [Term] id: CHEBI:22868 name: bile salt def: "A sodium salt of the conjugate of any bile acid with either glycine or taurine." [] is_a: CHEBI:36078 ! cholanoid is_a: CHEBI:38700 ! organic sodium salt [Term] id: CHEBI:22917 name: phytogenic insecticide def: "An insecticide compound naturally occurring in plants." [] is_a: CHEBI:24852 ! insecticide [Term] id: CHEBI:23004 name: carbamoyl group def: "The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid." [] is_a: CHEBI:27207 ! univalent carboacyl group relationship: is_substituent_group_from CHEBI:28616 ! carbamic acid property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CH2NO" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "44.03272" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "44.01364" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "*C(N)=O" xsd:string [Term] id: CHEBI:23019 name: carbonyl group is_a: CHEBI:51422 ! organodiyl group property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CO" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "28.01010" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "27.99491" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "O=C(*)*" xsd:string [Term] id: CHEBI:23357 name: cofactor def: "An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group)." [] is_a: CHEBI:52206 ! biochemical role [Term] id: CHEBI:23367 name: molecular entity def: "Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity." [] is_a: CHEBI:24431 ! chemical entity [Term] id: CHEBI:23888 name: drug def: "Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances." [] is_a: CHEBI:52217 ! pharmaceutical [Term] id: CHEBI:23906 name: monoatomic cation is_a: CHEBI:24867 ! monoatomic ion is_a: CHEBI:36916 ! cation [Term] id: CHEBI:23924 name: enzyme inhibitor def: "A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction." [] is_a: CHEBI:35222 ! inhibitor is_a: CHEBI:52206 ! biochemical role [Term] id: CHEBI:23982 name: ethanols def: "Any primary alcohol based on an ethanol skeleton." [] is_a: CHEBI:15734 ! primary alcohol [Term] id: CHEBI:24431 name: chemical entity def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] [Term] id: CHEBI:24432 name: biological role def: "A role played by the molecular entity or part thereof within a biological context." [] is_a: CHEBI:50906 ! role [Term] id: CHEBI:24433 name: group def: "A defined linked collection of atoms or a single atom within a molecular entity." [] is_a: CHEBI:24431 ! chemical entity relationship: BFO:0000051 CHEBI:33250 ! has part uncharged atom [Term] id: CHEBI:24532 name: organic heterocyclic compound def: "A cyclic compound having as ring members atoms of carbon and at least of one other element." [] is_a: CHEBI:33285 ! heteroorganic entity is_a: CHEBI:33832 ! organic cyclic compound is_a: CHEBI:5686 ! heterocyclic compound [Term] id: CHEBI:24651 name: hydroxides def: "Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-))." [] is_a: CHEBI:25806 ! oxygen molecular entity is_a: CHEBI:33608 ! hydrogen molecular entity is_a: CHEBI:37577 ! heteroatomic molecular entity relationship: BFO:0000051 CHEBI:43176 ! has part hydroxy group [Term] id: CHEBI:24782 name: imide is_a: CHEBI:33257 ! secondary amide [Term] id: CHEBI:24833 name: oxoacid def: "A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons)." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:24651 ! hydroxides relationship: RO:0000087 CHEBI:39141 ! has role Bronsted acid [Term] id: CHEBI:24834 name: inorganic anion is_a: CHEBI:22563 ! anion is_a: CHEBI:36914 ! inorganic ion [Term] id: CHEBI:24835 name: inorganic molecular entity def: "A molecular entity that contains no carbon." [] is_a: CHEBI:23367 ! molecular entity [Term] id: CHEBI:24836 name: inorganic oxide is_a: CHEBI:24835 ! inorganic molecular entity is_a: CHEBI:25741 ! oxide [Term] id: CHEBI:24852 name: insecticide def: "Strictly, a substance intended to kill members of the class Insecta. In common usage, any substance used for preventing, destroying, repelling or controlling insects." [] is_a: CHEBI:25944 ! pesticide [Term] id: CHEBI:24866 name: salt def: "A salt is an assembly of cations and anions." [] is_a: CHEBI:37577 ! heteroatomic molecular entity relationship: BFO:0000051 CHEBI:22563 ! has part anion relationship: BFO:0000051 CHEBI:36916 ! has part cation [Term] id: CHEBI:24867 name: monoatomic ion is_a: CHEBI:24870 ! ion is_a: CHEBI:33238 ! monoatomic entity is_a: COB:0000011 ! atom disjoint_from: CHEBI:33250 ! uncharged atom [Term] id: CHEBI:24868 name: organic salt is_a: CHEBI:24866 ! salt [Term] id: CHEBI:24870 name: ion def: "A molecular entity having a net electric charge." [] is_a: CHEBI:23367 ! molecular entity [Term] id: CHEBI:24921 name: isoquinoline alkaloid def: "Any alkaloid that has a structure based on an isoquinoline nucleus. They are derived from the amino acids like tyrosine and phenylalanine." [] is_a: CHEBI:22315 ! alkaloid [Term] id: CHEBI:25046 name: linear tetrapyrrole is_a: CHEBI:26932 ! tetrapyrrole [Term] id: CHEBI:25212 name: metabolite def: "Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites." [] is_a: CHEBI:52206 ! biochemical role [Term] id: CHEBI:25213 name: metal cation is_a: CHEBI:23906 ! monoatomic cation is_a: CHEBI:36915 ! inorganic cation [Term] id: CHEBI:25248 name: methyl ester def: "Any carboxylic ester resulting from the formal condensation of a carboxy group with methanol." [] is_a: CHEBI:33308 ! carboxylic ester relationship: has_functional_parent CHEBI:17790 ! methanol property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C2H3O2R" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "59.044" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "59.01330" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "COC([*])=O" xsd:string [Term] id: CHEBI:25367 name: molecule def: "Any polyatomic entity that is an electrically neutral entity consisting of more than one atom." [] is_a: CHEBI:36357 ! polyatomic entity [Term] id: CHEBI:25414 name: monoatomic monocation is_a: CHEBI:23906 ! monoatomic cation property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "0.00000" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[*+]" xsd:string [Term] id: CHEBI:25418 name: morphinane alkaloid def: "An isoquinoline alkaloid based on a morphinan skeleton and its substituted derivatives." [] is_a: CHEBI:24921 ! isoquinoline alkaloid [Term] id: CHEBI:25555 name: nitrogen atom is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33300 ! pnictogen relationship: RO:0000087 CHEBI:33937 ! has role macronutrient property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "14.007" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "14.00307" xsd:string [Term] id: CHEBI:25585 name: nonmetal atom is_a: CHEBI:33250 ! uncharged atom [Term] id: CHEBI:25693 name: organic heteromonocyclic compound is_a: CHEBI:24532 ! organic heterocyclic compound is_a: CHEBI:33670 ! heteromonocyclic compound [Term] id: CHEBI:25696 name: organic anion def: "Any organic ion with a net negative charge." [] is_a: CHEBI:22563 ! anion is_a: CHEBI:25699 ! organic ion [Term] id: CHEBI:25697 name: organic cation def: "Any organic ion with a net positive charge." [] is_a: CHEBI:25699 ! organic ion is_a: CHEBI:36916 ! cation [Term] id: CHEBI:25699 name: organic ion is_a: CHEBI:24870 ! ion is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:25704 name: organic sulfate def: "Compounds of the general formula SO3HOR where R is an organyl group" [] is_a: CHEBI:26820 ! sulfates relationship: is_conjugate_acid_of CHEBI:58958 ! organosulfate oxoanion [Term] id: CHEBI:2571 name: aliphatic alcohol def: "An alcohol derived from an aliphatic compound." [] is_a: CHEBI:30879 ! alcohol property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "HOR" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "17.007" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "17.00274" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "O*" xsd:string [Term] id: CHEBI:25741 name: oxide def: "An oxide is a chemical compound of oxygen with other chemical elements." [] is_a: CHEBI:25806 ! oxygen molecular entity is_a: CHEBI:37577 ! heteroatomic molecular entity [Term] id: CHEBI:25805 name: oxygen atom is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33303 ! chalcogen relationship: RO:0000087 CHEBI:33937 ! has role macronutrient property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QVGXLLKOCUKJST-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "15.99940" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "15.99491" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O]" xsd:string [Term] id: CHEBI:25806 name: oxygen molecular entity is_a: CHEBI:33304 ! chalcogen molecular entity relationship: BFO:0000051 CHEBI:25805 ! has part oxygen atom [Term] id: CHEBI:25944 name: pesticide def: "Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests." [] is_a: CHEBI:33232 ! application [Term] id: CHEBI:26416 name: pyridine alkaloid is_a: CHEBI:22315 ! alkaloid is_a: CHEBI:26421 ! pyridines [Term] id: CHEBI:26421 name: pyridines def: "Any organonitrogen heterocyclic compound based on a pyridine skeleton and its substituted derivatives." [] is_a: CHEBI:25693 ! organic heteromonocyclic compound is_a: CHEBI:38101 ! organonitrogen heterocyclic compound [Term] id: CHEBI:26456 name: pyrrolidine alkaloid is_a: CHEBI:22315 ! alkaloid is_a: CHEBI:38260 ! pyrrolidines [Term] id: CHEBI:26708 name: sodium atom is_a: CHEBI:22314 ! alkali metal atom relationship: RO:0000087 CHEBI:33937 ! has role macronutrient relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "Na" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/Na" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "KEAYESYHFKHZAL-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "22.98977" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "22.98977" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[Na]" xsd:string [Term] id: CHEBI:26712 name: sodium molecular entity is_a: CHEBI:33296 ! alkali metal molecular entity relationship: BFO:0000051 CHEBI:26708 ! has part sodium atom [Term] id: CHEBI:26714 name: sodium salt def: "Any alkali metal salt having sodium(1+) as the cation." [] is_a: CHEBI:26712 ! sodium molecular entity is_a: CHEBI:35479 ! alkali metal salt relationship: BFO:0000051 CHEBI:29101 ! has part sodium(1+) [Term] id: CHEBI:26819 name: sulfuric ester def: "An ester of an alcohol and sulfuric acid." [] is_a: CHEBI:35701 ! ester is_a: CHEBI:37826 ! sulfuric acid derivative property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "O4SR2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "96.06300" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "95.95173" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[*]OS(=O)(=O)O[*]" xsd:string [Term] id: CHEBI:26820 name: sulfates def: "Salts and esters of sulfuric acid" [] is_a: CHEBI:37826 ! sulfuric acid derivative [Term] id: CHEBI:26833 name: sulfur atom is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33303 ! chalcogen relationship: RO:0000087 CHEBI:33937 ! has role macronutrient property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "S" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/S" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "NINIDFKCEFEMDL-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "32.06600" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "31.97207" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[S]" xsd:string [Term] id: CHEBI:26835 name: sulfur molecular entity is_a: CHEBI:33304 ! chalcogen molecular entity relationship: BFO:0000051 CHEBI:26833 ! has part sulfur atom [Term] id: CHEBI:26836 name: sulfuric acid def: "A sulfur oxoacid that consists of two oxo and two hydroxy groups joined covalently to a central sulfur atom." [] is_a: CHEBI:33402 ! sulfur oxoacid relationship: is_conjugate_acid_of CHEBI:45696 ! hydrogensulfate relationship: RO:0000087 CHEBI:35223 ! has role catalyst property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "H2O4S" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QAOWNCQODCNURD-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "98.07948" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "97.96738" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H]OS(=O)(=O)O[H]" xsd:string [Term] id: CHEBI:26932 name: tetrapyrrole def: "A natural pigment containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next." [] is_a: CHEBI:33833 ! heteroarene is_a: CHEBI:38077 ! polypyrrole [Term] id: CHEBI:27171 name: organic heterobicyclic compound is_a: CHEBI:33672 ! heterobicyclic compound is_a: CHEBI:38166 ! organic heteropolycyclic compound [Term] id: CHEBI:27207 name: univalent carboacyl group def: "A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid." [] is_a: CHEBI:37838 ! carboacyl group [Term] id: CHEBI:27369 name: zwitterion def: "A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer)." [] is_a: CHEBI:51151 ! dipolar compound [Term] id: CHEBI:27594 name: carbon atom is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33306 ! carbon group element atom relationship: RO:0000087 CHEBI:33937 ! has role macronutrient property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "OKTJSMMVPCPJKN-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "12.01070" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "12.00000" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[C]" xsd:string [Term] id: CHEBI:27958 name: cocaine def: "A tropane alkaloid obtained from leaves of the South American shrub Erythroxylon coca." [] is_a: CHEBI:25248 ! methyl ester is_a: CHEBI:36054 ! benzoate ester is_a: CHEBI:37332 ! tropane alkaloid is_a: CHEBI:50996 ! tertiary amino compound relationship: is_conjugate_base_of CHEBI:60056 ! cocaine(1+) relationship: RO:0000087 CHEBI:35337 ! has role central nervous system stimulant relationship: RO:0000087 CHEBI:35524 ! has role sympathomimetic agent relationship: RO:0000087 CHEBI:35640 ! has role adrenergic uptake inhibitor relationship: RO:0000087 CHEBI:35703 ! has role xenobiotic relationship: RO:0000087 CHEBI:36333 ! has role local anaesthetic relationship: RO:0000087 CHEBI:38633 ! has role sodium channel blocker relationship: RO:0000087 CHEBI:50514 ! has role vasoconstrictor agent relationship: RO:0000087 CHEBI:50949 ! has role serotonin uptake inhibitor relationship: RO:0000087 CHEBI:51039 ! has role dopamine uptake inhibitor relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite relationship: RO:0000087 CHEBI:78298 ! has role environmental contaminant property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C17H21NO4" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C17H21NO4/c1-18-12-8-9-13(18)15(17(20)21-2)14(10-12)22-16(19)11-6-4-3-5-7-11/h3-7,12-15H,8-10H2,1-2H3/t12-,13+,14-,15+/m0/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "ZPUCINDJVBIVPJ-LJISPDSOSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "303.35290" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "303.14706" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][C@]12CC[C@]([H])([C@H]([C@H](C1)OC(=O)c1ccccc1)C(=O)OC)N2C" xsd:string [Term] id: CHEBI:28616 name: carbamic acid def: "A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised." [] is_a: CHEBI:35352 ! organonitrogen compound is_a: CHEBI:35605 ! carbon oxoacid is_a: CHEBI:64708 ! one-carbon compound relationship: is_conjugate_acid_of CHEBI:13941 ! carbamate relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CH3NO2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "KXDHJXZQYSOELW-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "61.04006" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "61.01638" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "NC(O)=O" xsd:string [Term] id: CHEBI:28938 name: ammonium def: "An onium cation obtained by protonation of ammonia." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35106 ! nitrogen hydride is_a: CHEBI:50313 ! onium cation is_a: CHEBI:60242 ! monovalent inorganic cation relationship: is_conjugate_acid_of CHEBI:16134 ! ammonia relationship: RO:0000087 CHEBI:23357 ! has role cofactor relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "H4N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H3N/h1H3/p+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QGZKDVFQNNGYKY-UHFFFAOYSA-O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "18.03850" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "18.03383" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][N+]([H])([H])[H]" xsd:string [Term] id: CHEBI:28965 name: dicarboxylic acid dianion def: "A carboxylic acid dianion obtained by deprotonation of both carboxy groups of any dicarboxylic acid." [] is_a: CHEBI:35693 ! dicarboxylic acid anion is_a: CHEBI:38716 ! carboxylic acid dianion property_value: http://purl.obolibrary.org/obo/chebi/charge "-2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C2O4R" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "88.019" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "87.97966" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]C(=O)[*]C([O-])=O" xsd:string [Term] id: CHEBI:29067 name: carboxylic acid anion def: "The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated." [] is_a: CHEBI:25696 ! organic anion is_a: CHEBI:35406 ! oxoanion relationship: is_conjugate_base_of CHEBI:33575 ! carboxylic acid property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CO2R" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "44.00950" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "43.98983" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]C([*])=O" xsd:string [Term] id: CHEBI:29101 name: sodium(1+) def: "A monoatomic monocation obtained from sodium." [] is_a: CHEBI:25414 ! monoatomic monocation is_a: CHEBI:33504 ! alkali metal cation is_a: CHEBI:37246 ! elemental sodium is_a: CHEBI:60242 ! monovalent inorganic cation relationship: RO:0000087 CHEBI:23357 ! has role cofactor relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "Na" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/Na/q+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "FKNQFGJONOIPTF-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "22.98977" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "22.98922" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[Na+]" xsd:string [Term] id: CHEBI:29337 name: azanide is_a: CHEBI:35106 ! nitrogen hydride is_a: CHEBI:79389 ! monovalent inorganic anion relationship: is_conjugate_acid_of CHEBI:29340 ! hydridonitrate(2-) relationship: is_conjugate_base_of CHEBI:16134 ! ammonia property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "H2N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H2N/h1H2/q-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "HYGWNUKOUCZBND-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "16.02262" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "16.01927" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][N-][H]" xsd:string [Term] id: CHEBI:29340 name: hydridonitrate(2-) def: "A divalent inorganic anion resulting from the removal of two protons from ammonia." [] is_a: CHEBI:35106 ! nitrogen hydride is_a: CHEBI:79388 ! divalent inorganic anion relationship: is_conjugate_base_of CHEBI:29337 ! azanide property_value: http://purl.obolibrary.org/obo/chebi/charge "-2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "HN" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/HN/h1H/q-2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "DZQYTNGKSBCIOE-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "15.01468" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "15.01200" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[N--][H]" xsd:string [Term] id: CHEBI:29412 name: oxonium is_a: CHEBI:33693 ! oxygen hydride is_a: CHEBI:50313 ! onium cation relationship: is_conjugate_acid_of CHEBI:15377 ! water property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "H3O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H2O/h1H2/p+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "XLYOFNOQVPJJNP-UHFFFAOYSA-O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "19.02322" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "19.01784" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][O+]([H])[H]" xsd:string [Term] id: CHEBI:30879 name: alcohol def: "A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom." [] is_a: CHEBI:33822 ! organic hydroxy compound property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "HOR" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "17.007" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "17.00274" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "O[*]" xsd:string [Term] id: CHEBI:32111 name: saccharin def: "A 1,2-benzisothiazole having a keto-group at the 3-position and two oxo substituents at the 1-position. It is used as an artificial sweetening agent." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:55505 ! 1,2-benzisothiazole is_a: CHEBI:90852 ! N-sulfonylcarboxamide relationship: RO:0000087 CHEBI:35703 ! has role xenobiotic relationship: RO:0000087 CHEBI:50505 ! has role sweetening agent relationship: RO:0000087 CHEBI:78298 ! has role environmental contaminant property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C7H5NO3S" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C7H5NO3S/c9-7-5-3-1-2-4-6(5)12(10,11)8-7/h1-4H,(H,8,9)" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "CVHZOJJKTDOEJC-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "183.18500" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "182.99901" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "O=C1NS(=O)(=O)c2ccccc12" xsd:string [Term] id: CHEBI:32988 name: amide def: "An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group." [] is_a: CHEBI:51143 ! nitrogen molecular entity [Term] id: CHEBI:33232 name: application def: "Intended use of the molecular entity or part thereof by humans." [] is_a: CHEBI:50906 ! role [Term] id: CHEBI:33233 name: fundamental particle def: "A particle not known to have substructure." [] is_a: CHEBI:36342 ! subatomic particle [Term] id: CHEBI:33238 name: monoatomic entity def: "A monoatomic entity is a molecular entity consisting of a single atom." [] is_a: CHEBI:33259 ! elemental molecular entity [Term] id: CHEBI:33241 name: oxoacid derivative is_a: CHEBI:37577 ! heteroatomic molecular entity relationship: has_functional_parent CHEBI:24833 ! oxoacid [Term] id: CHEBI:33242 name: inorganic hydride is_a: CHEBI:24835 ! inorganic molecular entity is_a: CHEBI:33692 ! hydrides [Term] id: CHEBI:33245 name: organic fundamental parent def: "An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system." [] is_a: CHEBI:37175 ! organic hydride is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:33246 name: inorganic group def: "Any substituent group which does not contain carbon." [] is_a: CHEBI:24433 ! group [Term] id: CHEBI:33247 name: organic group def: "Any substituent group or skeleton containing carbon." [] is_a: CHEBI:24433 ! group relationship: is_substituent_group_from CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:33249 name: organyl group def: "Any organic substituent group, regardless of functional type, having one free valence at a carbon atom." [] is_a: CHEBI:51447 ! organic univalent group [Term] id: CHEBI:33250 name: atom name: uncharged atom def: "A chemical entity constituting the smallest component of an element having the chemical properties of the element." [] is_a: CHEBI:24431 ! chemical entity is_a: COB:0000011 ! atom relationship: BFO:0000051 CHEBI:10545 ! has part electron [Term] id: CHEBI:33252 name: atomic nucleus def: "A nucleus is the positively charged central portion of an atom, excluding the orbital electrons." [] comment: Some people may be uncomfortable calling every proton an atomic nucleus comment: This is equivalent to CHEBI:33252 is_a: CHEBI:36347 ! nuclear particle relationship: BFO:0000051 CHEBI:33253 ! has part nucleon [Term] id: CHEBI:33253 name: nucleon def: "Heavy nuclear particle: proton or neutron." [] is_a: CHEBI:36339 ! baryon is_a: CHEBI:36347 ! nuclear particle [Term] id: CHEBI:33256 name: primary amide def: "A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group." [] is_a: CHEBI:32988 ! amide [Term] id: CHEBI:33257 name: secondary amide def: "A derivative of two oxoacids RkE(=O)l(OH)m (l =/= 0) in which two acyl groups are attached to the amino or substituted amino group." [] is_a: CHEBI:32988 ! amide [Term] id: CHEBI:33259 name: elemental molecular entity def: "A molecular entity all atoms of which have the same atomic number." [] is_a: CHEBI:23367 ! molecular entity [Term] id: CHEBI:33261 name: organosulfur compound def: "An organosulfur compound is a compound containing at least one carbon-sulfur bond." [] is_a: CHEBI:26835 ! sulfur molecular entity is_a: CHEBI:36962 ! organochalcogen compound [Term] id: CHEBI:33273 name: polyatomic anion def: "An anion consisting of more than one atom." [] is_a: CHEBI:22563 ! anion is_a: CHEBI:36358 ! polyatomic ion [Term] id: CHEBI:33281 name: antimicrobial agent def: "A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:33284 name: nutrient def: "A nutrient is a food component that an organism uses to survive and grow." [] is_a: CHEBI:78295 ! food component [Term] id: CHEBI:33285 name: heteroorganic entity def: "A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms." [] is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:33290 name: food def: "A physiological role played by any substance of either plant, animal or artificial origin which contains essential body nutrients that can be ingested by an organism to provide energy, promote growth, and maintain the processes of life." [] is_a: CHEBI:52211 ! physiological role relationship: BFO:0000051 CHEBI:78295 ! has part food component [Term] id: CHEBI:33292 name: fuel def: "An energy-rich substance that can be transformed with release of usable energy." [] is_a: CHEBI:33232 ! application [Term] id: CHEBI:33296 name: alkali metal molecular entity def: "A molecular entity containing one or more atoms of an alkali metal." [] is_a: CHEBI:33674 ! s-block molecular entity relationship: BFO:0000051 CHEBI:22314 ! has part alkali metal atom [Term] id: CHEBI:33300 name: pnictogen def: "Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth." [] is_a: CHEBI:33560 ! p-block element atom [Term] id: CHEBI:33302 name: pnictogen molecular entity def: "A p-block molecular entity containing any pnictogen." [] is_a: CHEBI:33675 ! p-block molecular entity relationship: BFO:0000051 CHEBI:33300 ! has part pnictogen [Term] id: CHEBI:33303 name: chalcogen def: "Any p-block element belonging to the group 16 family of the periodic table." [] is_a: CHEBI:33560 ! p-block element atom [Term] id: CHEBI:33304 name: chalcogen molecular entity def: "Any p-block molecular entity containing a chalcogen." [] is_a: CHEBI:33675 ! p-block molecular entity relationship: BFO:0000051 CHEBI:33303 ! has part chalcogen [Term] id: CHEBI:33306 name: carbon group element atom is_a: CHEBI:33560 ! p-block element atom [Term] id: CHEBI:33308 name: carboxylic ester def: "An ester of a carboxylic acid, R(1)C(=O)OR(2), where R(1) = H or organyl and R(2) = organyl." [] is_a: CHEBI:35701 ! ester is_a: CHEBI:36586 ! carbonyl compound property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CO2R2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "44.010" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "43.98983" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[*]C(=O)O[*]" xsd:string [Term] id: CHEBI:33318 name: main group element atom def: "An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table." [] is_a: CHEBI:33250 ! uncharged atom [Term] id: CHEBI:33402 name: sulfur oxoacid is_a: CHEBI:26835 ! sulfur molecular entity is_a: CHEBI:33484 ! chalcogen oxoacid [Term] id: CHEBI:33424 name: sulfur oxoacid derivative is_a: CHEBI:26835 ! sulfur molecular entity is_a: CHEBI:33241 ! oxoacid derivative [Term] id: CHEBI:33482 name: sulfur oxoanion is_a: CHEBI:26835 ! sulfur molecular entity is_a: CHEBI:33485 ! chalcogen oxoanion [Term] id: CHEBI:33484 name: chalcogen oxoacid is_a: CHEBI:24833 ! oxoacid relationship: RO:0000087 CHEBI:138103 ! has role inorganic acid [Term] id: CHEBI:33485 name: chalcogen oxoanion is_a: CHEBI:35406 ! oxoanion [Term] id: CHEBI:33504 name: alkali metal cation is_a: CHEBI:25213 ! metal cation [Term] id: CHEBI:33521 name: metal atom def: "An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity." [] is_a: CHEBI:33250 ! uncharged atom [Term] id: CHEBI:33558 name: alpha-amino-acid anion def: "An amino-acid anion obtained by deprotonation of any alpha-amino acid." [] is_a: CHEBI:37022 ! amino-acid anion relationship: is_conjugate_base_of CHEBI:33704 ! alpha-amino acid [Term] id: CHEBI:33559 name: s-block element atom is_a: CHEBI:33250 ! uncharged atom [Term] id: CHEBI:33560 name: p-block element atom def: "Any main group element atom belonging to the p-block of the periodic table." [] is_a: CHEBI:33318 ! main group element atom [Term] id: CHEBI:33575 name: carboxylic acid def: "A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid." [] is_a: CHEBI:35605 ! carbon oxoacid is_a: CHEBI:36586 ! carbonyl compound is_a: CHEBI:64709 ! organic acid relationship: BFO:0000051 CHEBI:46883 ! has part carboxy group relationship: is_conjugate_acid_of CHEBI:29067 ! carboxylic acid anion property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CHO2R" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "45.01740" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "44.99765" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "OC([*])=O" xsd:string [Term] id: CHEBI:33579 name: main group molecular entity def: "A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table." [] is_a: CHEBI:23367 ! molecular entity relationship: BFO:0000051 CHEBI:33318 ! has part main group element atom [Term] id: CHEBI:33582 name: carbon group molecular entity is_a: CHEBI:33675 ! p-block molecular entity relationship: BFO:0000051 CHEBI:33306 ! has part carbon group element atom [Term] id: CHEBI:33595 name: cyclic compound def: "Any molecule that consists of a series of atoms joined together to form a ring." [] is_a: CHEBI:25367 ! molecule [Term] id: CHEBI:33597 name: homocyclic compound def: "A cyclic compound having as ring members atoms of the same element only." [] is_a: CHEBI:33595 ! cyclic compound [Term] id: CHEBI:33598 name: carbocyclic compound def: "A homocyclic compound in which all of the ring members are carbon atoms." [] is_a: CHEBI:33597 ! homocyclic compound is_a: CHEBI:33832 ! organic cyclic compound [Term] id: CHEBI:33608 name: hydrogen molecular entity is_a: CHEBI:33674 ! s-block molecular entity relationship: BFO:0000051 CHEBI:49637 ! has part hydrogen atom [Term] id: CHEBI:33635 name: polycyclic compound is_a: CHEBI:33595 ! cyclic compound [Term] id: CHEBI:33636 name: bicyclic compound def: "A molecule that features two fused rings." [] is_a: CHEBI:33595 ! cyclic compound [Term] id: CHEBI:33655 name: aromatic compound def: "A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character." [] is_a: CHEBI:33595 ! cyclic compound [Term] id: CHEBI:33659 name: organic aromatic compound is_a: CHEBI:33655 ! aromatic compound is_a: CHEBI:33832 ! organic cyclic compound [Term] id: CHEBI:33661 name: monocyclic compound is_a: CHEBI:33595 ! cyclic compound [Term] id: CHEBI:33670 name: heteromonocyclic compound is_a: CHEBI:33661 ! monocyclic compound is_a: CHEBI:5686 ! heterocyclic compound [Term] id: CHEBI:33671 name: heteropolycyclic compound def: "A polycyclic compound in which at least one of the rings contains at least one non-carbon atom." [] is_a: CHEBI:33635 ! polycyclic compound is_a: CHEBI:5686 ! heterocyclic compound [Term] id: CHEBI:33672 name: heterobicyclic compound def: "A bicyclic compound in which at least one of the rings contains at least one skeletal heteroatom." [] is_a: CHEBI:33636 ! bicyclic compound is_a: CHEBI:5686 ! heterocyclic compound [Term] id: CHEBI:33674 name: s-block molecular entity def: "An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element." [] is_a: CHEBI:33579 ! main group molecular entity relationship: BFO:0000051 CHEBI:33559 ! has part s-block element atom [Term] id: CHEBI:33675 name: p-block molecular entity def: "A main group molecular entity that contains one or more atoms of a p-block element." [] is_a: CHEBI:33579 ! main group molecular entity relationship: BFO:0000051 CHEBI:33560 ! has part p-block element atom [Term] id: CHEBI:33692 name: hydrides def: "Hydrides are chemical compounds of hydrogen with other chemical elements." [] is_a: CHEBI:33608 ! hydrogen molecular entity is_a: CHEBI:37577 ! heteroatomic molecular entity [Term] id: CHEBI:33693 name: oxygen hydride is_a: CHEBI:36902 ! chalcogen hydride [Term] id: CHEBI:33694 name: biomacromolecule def: "A macromolecule formed by a living organism." [] is_a: CHEBI:33839 ! macromolecule is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:33695 name: information biomacromolecule is_a: CHEBI:33694 ! biomacromolecule [Term] id: CHEBI:33700 name: proteinogenic amino-acid residue is_a: CHEBI:33710 ! alpha-amino-acid residue [Term] id: CHEBI:33702 name: polyatomic cation def: "A cation consisting of more than one atom." [] is_a: CHEBI:36358 ! polyatomic ion is_a: CHEBI:36916 ! cation [Term] id: CHEBI:33704 name: alpha-amino acid def: "An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group." [] is_a: CHEBI:33709 ! amino acid relationship: is_conjugate_acid_of CHEBI:33558 ! alpha-amino-acid anion relationship: is_tautomer_of CHEBI:78608 ! alpha-amino acid zwitterion property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C2H4NO2R" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "74.05870" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "74.02420" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "NC([*])C(O)=O" xsd:string [Term] id: CHEBI:33708 name: amino-acid residue def: "When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue." [] is_a: CHEBI:33247 ! organic group relationship: is_substituent_group_from CHEBI:33709 ! amino acid [Term] id: CHEBI:33709 name: amino acid def: "A carboxylic acid containing one or more amino groups." [] is_a: CHEBI:33575 ! carboxylic acid is_a: CHEBI:50047 ! organic amino compound relationship: is_conjugate_acid_of CHEBI:37022 ! amino-acid anion [Term] id: CHEBI:33710 name: alpha-amino-acid residue is_a: CHEBI:33708 ! amino-acid residue relationship: is_substituent_group_from CHEBI:33704 ! alpha-amino acid [Term] id: CHEBI:33720 name: carbohydrate acid is_a: CHEBI:16646 ! carbohydrate is_a: CHEBI:33575 ! carboxylic acid relationship: is_conjugate_acid_of CHEBI:33721 ! carbohydrate acid anion [Term] id: CHEBI:33721 name: carbohydrate acid anion is_a: CHEBI:29067 ! carboxylic acid anion relationship: is_conjugate_base_of CHEBI:33720 ! carbohydrate acid [Term] id: CHEBI:33822 name: organic hydroxy compound def: "An organic compound having at least one hydroxy group attached to a carbon atom." [] is_a: CHEBI:24651 ! hydroxides is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:33832 name: organic cyclic compound def: "Any organic molecule that consists of atoms connected in the form of a ring." [] is_a: CHEBI:33595 ! cyclic compound is_a: CHEBI:72695 ! organic molecule [Term] id: CHEBI:33833 name: heteroarene def: "A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2)." [] is_a: CHEBI:24532 ! organic heterocyclic compound is_a: CHEBI:33659 ! organic aromatic compound [Term] id: CHEBI:33836 name: benzenoid aromatic compound is_a: CHEBI:33598 ! carbocyclic compound is_a: CHEBI:33659 ! organic aromatic compound [Term] id: CHEBI:33837 name: conjugated protein def: "Conjugated protein is a protein that contains a non-peptide component, usually in stoichiometric proportion." [] is_a: CHEBI:36080 ! protein [Term] id: CHEBI:33839 name: macromolecule def: "A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [] is_a: CHEBI:36357 ! polyatomic entity [Term] id: CHEBI:33859 name: aromatic carboxylic acid def: "Any carboxylic acid in which the carboxy group is directly bonded to an aromatic ring." [] is_a: CHEBI:33575 ! carboxylic acid is_a: CHEBI:33659 ! organic aromatic compound relationship: is_conjugate_acid_of CHEBI:91007 ! aromatic carboxylate [Term] id: CHEBI:33893 name: reagent def: "A substance used in a chemical reaction to detect, measure, examine, or produce other substances." [] is_a: CHEBI:33232 ! application [Term] id: CHEBI:33937 name: macronutrient def: "Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals." [] is_a: CHEBI:33284 ! nutrient [Term] id: CHEBI:35106 name: nitrogen hydride is_a: CHEBI:35881 ! pnictogen hydride is_a: CHEBI:51143 ! nitrogen molecular entity [Term] id: CHEBI:35107 name: azane def: "Saturated acyclic nitrogen hydrides having the general formula NnHn+2." [] is_a: CHEBI:35106 ! nitrogen hydride [Term] id: CHEBI:35222 name: inhibitor def: "A substance that diminishes the rate of a chemical reaction." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:35223 name: catalyst def: "A substance that increases the rate of a reaction without modifying the overall standard Gibbs energy change in the reaction." [] is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:35238 name: amino acid zwitterion def: "The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group." [] is_a: CHEBI:27369 ! zwitterion [Term] id: CHEBI:35274 name: ammonium ion derivative def: "A derivative of ammonium, NH4(+), in which one (or more) of the hydrogens bonded to the nitrogen have been replaced with univalent organyl groups. The substituting carbon of the organyl group must not itself be directly attached to a heteroatom (thereby excluding protonated amides, hemiaminals, etc)." [] is_a: CHEBI:33702 ! polyatomic cation is_a: CHEBI:51143 ! nitrogen molecular entity relationship: has_parent_hydride CHEBI:28938 ! ammonium [Term] id: CHEBI:35337 name: central nervous system stimulant def: "Any drug that enhances the activity of the central nervous system." [] is_a: CHEBI:35470 ! central nervous system drug [Term] id: CHEBI:35341 name: steroid def: "Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene which is a triterpene." [] is_a: CHEBI:18059 ! lipid is_a: CHEBI:51958 ! organic polycyclic compound property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C19H31R" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "259.450" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "259.24258" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CCCC4)C" xsd:string [Term] id: CHEBI:35352 name: organonitrogen compound def: "Any heteroorganic entity containing at least one carbon-nitrogen bond." [] is_a: CHEBI:33285 ! heteroorganic entity is_a: CHEBI:51143 ! nitrogen molecular entity [Term] id: CHEBI:35406 name: oxoanion def: "An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen." [] is_a: CHEBI:25741 ! oxide is_a: CHEBI:33273 ! polyatomic anion [Term] id: CHEBI:35441 name: antiinfective agent def: "A substance used in the prophylaxis or therapy of infectious diseases." [] is_a: CHEBI:23888 ! drug [Term] id: CHEBI:35470 name: central nervous system drug def: "A class of drugs producing both physiological and psychological effects through a variety of mechanisms involving the central nervous system." [] is_a: CHEBI:23888 ! drug [Term] id: CHEBI:35471 name: psychotropic drug def: "A loosely defined grouping of drugs that have effects on psychological function." [] is_a: CHEBI:35470 ! central nervous system drug [Term] id: CHEBI:35473 name: tranquilizing drug def: "A traditional grouping of drugs said to have a soothing or calming effect on mood, thought or behaviour." [] is_a: CHEBI:35471 ! psychotropic drug is_a: CHEBI:35488 ! central nervous system depressant [Term] id: CHEBI:35474 name: anxiolytic drug def: "Anxiolytic drugs are agents that alleviate anxiety, tension, and anxiety disorders, promote sedation, and have a calming effect without affecting clarity of consciousness or neurologic conditions." [] is_a: CHEBI:35473 ! tranquilizing drug [Term] id: CHEBI:35479 name: alkali metal salt is_a: CHEBI:24866 ! salt is_a: CHEBI:33296 ! alkali metal molecular entity [Term] id: CHEBI:35480 name: analgesic def: "An agent capable of relieving pain without the loss of consciousness or without producing anaesthesia. In addition, analgesic is a role played by a compound which is exhibited by a capability to cause a reduction of pain symptoms." [] is_a: CHEBI:23888 ! drug is_a: CHEBI:52210 ! pharmacological role [Term] id: CHEBI:35482 name: opioid analgesic def: "A narcotic or opioid substance, synthetic or semisynthetic agent producing profound analgesia, drowsiness, and changes in mood." [] is_a: CHEBI:35480 ! analgesic [Term] id: CHEBI:35488 name: central nervous system depressant def: "A loosely defined group of drugs that tend to reduce the activity of the central nervous system." [] is_a: CHEBI:35470 ! central nervous system drug [Term] id: CHEBI:35506 name: alkaloid fundamental parent is_a: CHEBI:35507 ! natural product fundamental parent [Term] id: CHEBI:35507 name: natural product fundamental parent is_a: CHEBI:33245 ! organic fundamental parent [Term] id: CHEBI:35508 name: steroid fundamental parent is_a: CHEBI:35341 ! steroid is_a: CHEBI:35507 ! natural product fundamental parent [Term] id: CHEBI:35519 name: cholane is_a: CHEBI:35508 ! steroid fundamental parent property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C24H42" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C24H42/c1-5-8-17(2)20-12-13-21-19-11-10-18-9-6-7-15-23(18,3)22(19)14-16-24(20,21)4/h17-22H,5-16H2,1-4H3/t17-,18?,19+,20-,21+,22+,23+,24-/m1/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QSHQKIURKJITMZ-BRPMRXRMSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "330.59028" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "330.32865" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][C@@]1(CC[C@@]2([H])[C@]3([H])CCC4CCCC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC" xsd:string [Term] id: CHEBI:35524 name: sympathomimetic agent def: "A drug that mimics the effects of stimulating postganglionic adrenergic sympathetic nerves. Included in this class are drugs that directly stimulate adrenergic receptors and drugs that act indirectly by provoking the release of adrenergic transmitters." [] is_a: CHEBI:37962 ! adrenergic agent [Term] id: CHEBI:35554 name: cardiovascular drug def: "A drug that affects the rate or intensity of cardiac contraction, blood vessel diameter or blood volume." [] is_a: CHEBI:23888 ! drug [Term] id: CHEBI:35605 name: carbon oxoacid is_a: CHEBI:24833 ! oxoacid is_a: CHEBI:36963 ! organooxygen compound [Term] id: CHEBI:35617 name: flavouring agent def: "A food additive that is used to added improve the taste or odour of a food." [] is_a: CHEBI:64047 ! food additive [Term] id: CHEBI:35620 name: vasodilator agent def: "A drug used to cause dilation of the blood vessels." [] is_a: CHEBI:35554 ! cardiovascular drug [Term] id: CHEBI:35640 name: adrenergic uptake inhibitor def: "Adrenergic uptake inhibitors are drugs that block the transport of adrenergic transmitters into axon terminals or into storage vesicles within terminals. The tricyclic antidepressants and amphetamines are among the therapeutically important drugs that may act via inhibition of adrenergic transport. Many of these drugs also block transport of serotonin." [] is_a: CHEBI:37962 ! adrenergic agent [Term] id: CHEBI:35649 name: morphinan is_a: CHEBI:25418 ! morphinane alkaloid is_a: CHEBI:38515 ! isoquinoline alkaloid fundamental parent property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C16H21N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C16H21N/c1-2-6-13-12(5-1)11-15-14-7-3-4-8-16(13,14)9-10-17-15/h1-2,5-6,14-15,17H,3-4,7-11H2/t14-,15+,16-/m0/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "INAXVFBXDYWQFN-XHSDSOJGSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "227.34468" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "227.16740" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][C@@]12CCCC[C@@]11CCN[C@@H]2Cc2ccccc12" xsd:string [Term] id: CHEBI:35692 name: dicarboxylic acid def: "Any carboxylic acid containing two carboxy groups." [] is_a: CHEBI:131927 ! dicarboxylic acids and O-substituted derivatives is_a: CHEBI:33575 ! carboxylic acid relationship: is_conjugate_acid_of CHEBI:35693 ! dicarboxylic acid anion [Term] id: CHEBI:35693 name: dicarboxylic acid anion is_a: CHEBI:29067 ! carboxylic acid anion relationship: is_conjugate_base_of CHEBI:35692 ! dicarboxylic acid [Term] id: CHEBI:35701 name: ester def: "A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter." [] is_a: CHEBI:36963 ! organooxygen compound [Term] id: CHEBI:35703 name: xenobiotic def: "A xenobiotic (Greek, xenos \"foreign\"; bios \"life\") is a compound that is foreign to a living organism. Principal xenobiotics include: drugs, carcinogens and various compounds that have been introduced into the environment by artificial means." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:35722 name: sulfated glycosaminoglycan is_a: CHEBI:18085 ! glycosaminoglycan is_a: CHEBI:35724 ! carbohydrate sulfate [Term] id: CHEBI:35724 name: carbohydrate sulfate is_a: CHEBI:25704 ! organic sulfate is_a: CHEBI:26819 ! sulfuric ester is_a: CHEBI:63299 ! carbohydrate derivative [Term] id: CHEBI:35881 name: pnictogen hydride is_a: CHEBI:33242 ! inorganic hydride is_a: CHEBI:33302 ! pnictogen molecular entity [Term] id: CHEBI:35942 name: neurotransmitter agent def: "A substance used for its pharmacological action on any aspect of neurotransmitter systems. Neurotransmitter agents include agonists, antagonists, degradation inhibitors, uptake inhibitors, depleters, precursors, and modulators of receptor function." [] is_a: CHEBI:23888 ! drug is_a: CHEBI:52210 ! pharmacological role [Term] id: CHEBI:36054 name: benzoate ester def: "Esters of benzoic acid or substituted benzoic acids." [] is_a: CHEBI:33308 ! carboxylic ester is_a: CHEBI:62732 ! aromatic ester relationship: has_functional_parent CHEBI:22723 ! benzoic acids [Term] id: CHEBI:36078 name: cholanoid is_a: CHEBI:35341 ! steroid relationship: has_parent_hydride CHEBI:35519 ! cholane [Term] id: CHEBI:36080 name: protein def: "A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome." [] is_a: CHEBI:33695 ! information biomacromolecule relationship: BFO:0000051 CHEBI:16541 ! has part protein polypeptide chain [Term] id: CHEBI:36277 name: bile acid salt def: "A salt of a bile acid." [] is_a: CHEBI:24868 ! organic salt is_a: CHEBI:36078 ! cholanoid [Term] id: CHEBI:36333 name: local anaesthetic def: "Any member of a group of drugs that reversibly inhibit the propagation of signals along nerves. Wide variations in potency, stability, toxicity, water-solubility and duration of action determine the route used for administration, e.g. topical, intravenous, epidural or spinal block." [] is_a: CHEBI:38867 ! anaesthetic [Term] id: CHEBI:36338 name: lepton def: "Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin)." [] is_a: CHEBI:33233 ! fundamental particle is_a: CHEBI:36340 ! fermion [Term] id: CHEBI:36339 name: baryon def: "Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy)." [] is_a: CHEBI:36340 ! fermion is_a: CHEBI:36344 ! hadron [Term] id: CHEBI:36340 name: fermion def: "Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi." [] is_a: CHEBI:36342 ! subatomic particle [Term] id: CHEBI:36342 name: subatomic particle def: "A particle smaller than an atom." [] is_a: BFO:0000040 ! material entity [Term] id: CHEBI:36343 name: composite particle def: "A subatomic particle known to have substructure (i.e. consisting of smaller particles)." [] is_a: CHEBI:36342 ! subatomic particle [Term] id: CHEBI:36344 name: hadron def: "Hadron is a subatomic particle which experiences the strong force." [] is_a: CHEBI:36343 ! composite particle [Term] id: CHEBI:36347 name: nuclear particle def: "A nucleus or any of its constituents in any of their energy states." [] is_a: CHEBI:36342 ! subatomic particle [Term] id: CHEBI:36357 name: polyatomic entity def: "Any molecular entity consisting of more than one atom." [] is_a: CHEBI:23367 ! molecular entity relationship: BFO:0000051 CHEBI:24433 ! has part group [Term] id: CHEBI:36358 name: polyatomic ion def: "An ion consisting of more than one atom." [] is_a: CHEBI:24870 ! ion is_a: CHEBI:36357 ! polyatomic entity [Term] id: CHEBI:36586 name: carbonyl compound def: "Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives." [] is_a: CHEBI:36587 ! organic oxo compound is_a: CHEBI:36963 ! organooxygen compound relationship: BFO:0000051 CHEBI:23019 ! has part carbonyl group [Term] id: CHEBI:36587 name: organic oxo compound def: "Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element." [] is_a: CHEBI:72695 ! organic molecule relationship: BFO:0000051 CHEBI:46629 ! has part oxo group [Term] id: CHEBI:36735 name: biladienes def: "Compounds based on a biladiene skeleton." [] is_a: CHEBI:25046 ! linear tetrapyrrole [Term] id: CHEBI:36902 name: chalcogen hydride is_a: CHEBI:33242 ! inorganic hydride is_a: CHEBI:33304 ! chalcogen molecular entity [Term] id: CHEBI:36914 name: inorganic ion is_a: CHEBI:24835 ! inorganic molecular entity is_a: CHEBI:24870 ! ion [Term] id: CHEBI:36915 name: inorganic cation is_a: CHEBI:36914 ! inorganic ion is_a: CHEBI:36916 ! cation [Term] id: CHEBI:36916 name: cation def: "A monoatomic or polyatomic species having one or more elementary charges of the proton." [] is_a: CHEBI:24870 ! ion [Term] id: CHEBI:36962 name: organochalcogen compound def: "An organochalcogen compound is a compound containing at least one carbon-chalcogen bond." [] is_a: CHEBI:33285 ! heteroorganic entity is_a: CHEBI:33304 ! chalcogen molecular entity [Term] id: CHEBI:36963 name: organooxygen compound def: "An organochalcogen compound containing at least one carbon-oxygen bond." [] is_a: CHEBI:25806 ! oxygen molecular entity is_a: CHEBI:36962 ! organochalcogen compound [Term] id: CHEBI:37022 name: amino-acid anion is_a: CHEBI:29067 ! carboxylic acid anion is_a: CHEBI:35352 ! organonitrogen compound relationship: is_conjugate_base_of CHEBI:33709 ! amino acid [Term] id: CHEBI:37175 name: organic hydride is_a: CHEBI:33692 ! hydrides [Term] id: CHEBI:37176 name: mononuclear parent hydride is_a: CHEBI:33692 ! hydrides [Term] id: CHEBI:37246 name: elemental sodium is_a: CHEBI:26712 ! sodium molecular entity [Term] id: CHEBI:37332 name: tropane alkaloid is_a: CHEBI:22315 ! alkaloid is_a: CHEBI:38295 ! azabicycloalkane [Term] id: CHEBI:37395 name: mucopolysaccharide def: "Any of the group of polysaccharides composed of alternating units from uronic acids and glycosamines, and commonly partially esterified with sulfuric acid." [] is_a: CHEBI:18085 ! glycosaminoglycan [Term] id: CHEBI:37527 name: acid def: "An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid)." [] is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:37577 name: heteroatomic molecular entity def: "A molecular entity consisting of two or more chemical elements." [] is_a: CHEBI:36357 ! polyatomic entity [Term] id: CHEBI:37622 name: carboxamide def: "An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom." [] is_a: CHEBI:33256 ! primary amide is_a: CHEBI:35352 ! organonitrogen compound is_a: CHEBI:36963 ! organooxygen compound relationship: BFO:0000051 CHEBI:23004 ! has part carbamoyl group property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CNOR3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "42.01680" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "41.99799" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[*]C(=O)N([*])[*]" xsd:string [Term] id: CHEBI:37716 name: mixed diacylamine def: "Any imide in which the acyl substituents are any two from carboacyl, sulfonyl and phosphoryl" [] is_a: CHEBI:24782 ! imide [Term] id: CHEBI:37826 name: sulfuric acid derivative is_a: CHEBI:33424 ! sulfur oxoacid derivative relationship: has_functional_parent CHEBI:26836 ! sulfuric acid [Term] id: CHEBI:37838 name: carboacyl group def: "A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid." [] is_a: CHEBI:22221 ! acyl group relationship: is_substituent_group_from CHEBI:33575 ! carboxylic acid [Term] id: CHEBI:37947 name: benzothiazoles is_a: CHEBI:27171 ! organic heterobicyclic compound is_a: CHEBI:38101 ! organonitrogen heterocyclic compound is_a: CHEBI:38106 ! organosulfur heterocyclic compound [Term] id: CHEBI:37962 name: adrenergic agent def: "Any agent that acts on an adrenergic receptor or affects the life cycle of an adrenergic transmitter." [] is_a: CHEBI:35942 ! neurotransmitter agent [Term] id: CHEBI:38077 name: polypyrrole def: "A compound composed of two or more pyrrole units." [] is_a: CHEBI:38101 ! organonitrogen heterocyclic compound [Term] id: CHEBI:38101 name: organonitrogen heterocyclic compound def: "Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms." [] is_a: CHEBI:24532 ! organic heterocyclic compound is_a: CHEBI:35352 ! organonitrogen compound [Term] id: CHEBI:38106 name: organosulfur heterocyclic compound is_a: CHEBI:24532 ! organic heterocyclic compound is_a: CHEBI:33261 ! organosulfur compound [Term] id: CHEBI:38164 name: organic heteropentacyclic compound is_a: CHEBI:38166 ! organic heteropolycyclic compound [Term] id: CHEBI:38166 name: organic heteropolycyclic compound is_a: CHEBI:24532 ! organic heterocyclic compound is_a: CHEBI:33671 ! heteropolycyclic compound [Term] id: CHEBI:38260 name: pyrrolidines def: "Any of a class of heterocyclic amines having a saturated five-membered ring." [] is_a: CHEBI:25693 ! organic heteromonocyclic compound is_a: CHEBI:38101 ! organonitrogen heterocyclic compound [Term] id: CHEBI:38295 name: azabicycloalkane is_a: CHEBI:27171 ! organic heterobicyclic compound is_a: CHEBI:38101 ! organonitrogen heterocyclic compound [Term] id: CHEBI:38323 name: cholinergic drug def: "Any drug used for its actions on cholinergic systems. Included here are agonists and antagonists, drugs that affect the life cycle of acetylcholine, and drugs that affect the survival of cholinergic neurons." [] is_a: CHEBI:35942 ! neurotransmitter agent [Term] id: CHEBI:38324 name: cholinergic agonist def: "Any drug that binds to and activates cholinergic receptors." [] is_a: CHEBI:38323 ! cholinergic drug [Term] id: CHEBI:38515 name: isoquinoline alkaloid fundamental parent is_a: CHEBI:35506 ! alkaloid fundamental parent [Term] id: CHEBI:38632 name: membrane transport modulator def: "Any agent that affects the transport of molecular entities across a biological membrane." [] is_a: CHEBI:52208 ! biophysical role [Term] id: CHEBI:38633 name: sodium channel blocker def: "An agent that inhibits sodium influx through cell membranes." [] is_a: CHEBI:39000 ! sodium channel modulator [Term] id: CHEBI:38700 name: organic sodium salt is_a: CHEBI:24868 ! organic salt is_a: CHEBI:26714 ! sodium salt [Term] id: CHEBI:38716 name: carboxylic acid dianion def: "Any dianion containing at least one carboxy group." [] is_a: CHEBI:29067 ! carboxylic acid anion [Term] id: CHEBI:38867 name: anaesthetic def: "Substance which produces loss of feeling or sensation." [] is_a: CHEBI:23888 ! drug [Term] id: CHEBI:39000 name: sodium channel modulator is_a: CHEBI:38632 ! membrane transport modulator [Term] id: CHEBI:39141 name: Bronsted acid def: "A molecular entity capable of donating a hydron to an acceptor (Bronsted base)." [] is_a: CHEBI:17891 ! donor is_a: CHEBI:37527 ! acid [Term] id: CHEBI:39142 name: Bronsted base def: "A molecular entity capable of accepting a hydron from a donor (Bronsted acid)." [] is_a: CHEBI:15339 ! acceptor is_a: CHEBI:22695 ! base [Term] id: CHEBI:39144 name: Lewis base def: "A molecular entity able to provide a pair of electrons and thus capable of forming a covalent bond with an electron-pair acceptor (Lewis acid), thereby producing a Lewis adduct." [] is_a: CHEBI:17891 ! donor is_a: CHEBI:22695 ! base [Term] id: CHEBI:39162 name: (R)-nicotine def: "A 3-(1-methylpyrrolidin-2-yl)pyridine in which the chiral centre has R-configuration." [] is_a: CHEBI:138000 ! 3-(1-methylpyrrolidin-2-yl)pyridine relationship: is_conjugate_base_of CHEBI:79008 ! (R)-nicotinium(1+) relationship: is_enantiomer_of CHEBI:17688 ! (S)-nicotine property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C10H14N2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/t10-/m1/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "SNICXCGAKADSCV-SNVBAGLBSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "162.23160" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "162.11570" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "CN1CCC[C@@H]1c1cccnc1" xsd:string [Term] id: CHEBI:43176 name: hydroxy group is_a: CHEBI:33246 ! inorganic group property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "HO" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "17.00734" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "17.00274" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "*O[H]" xsd:string [Term] id: CHEBI:45696 name: hydrogensulfate is_a: CHEBI:33482 ! sulfur oxoanion relationship: is_conjugate_acid_of CHEBI:16189 ! sulfate relationship: is_conjugate_base_of CHEBI:26836 ! sulfuric acid property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "HO4S" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QAOWNCQODCNURD-UHFFFAOYSA-M" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "97.07154" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "96.96010" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H]OS([O-])(=O)=O" xsd:string [Term] id: CHEBI:46629 name: oxo group is_a: CHEBI:33246 ! inorganic group property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "15.99940" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "15.99491" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "O=*" xsd:string [Term] id: CHEBI:46775 name: N-alkylpyrrolidine is_a: CHEBI:38260 ! pyrrolidines is_a: CHEBI:50996 ! tertiary amino compound [Term] id: CHEBI:46787 name: solvent def: "A liquid that can dissolve other substances (solutes) without any change in their chemical composition." [] is_a: CHEBI:33232 ! application is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:46883 name: carboxy group is_a: CHEBI:33249 ! organyl group property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CHO2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "45.01744" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "44.99765" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "*C(=O)O" xsd:string [Term] id: CHEBI:47867 name: indicator def: "Anything used in a scientific experiment to indicate the presence of a substance or quality, change in a body, etc." [] is_a: CHEBI:33232 ! application [Term] id: CHEBI:47958 name: nicotinic acetylcholine receptor agonist def: "An agonist that selectively binds to and activates a nicotinic acetylcholine receptor." [] is_a: CHEBI:38324 ! cholinergic agonist [Term] id: CHEBI:48154 name: sulfur oxide is_a: CHEBI:24836 ! inorganic oxide is_a: CHEBI:26835 ! sulfur molecular entity [Term] id: CHEBI:48218 name: antiseptic drug def: "A substance used locally on humans and other animals to destroy harmful microorganisms or to inhibit their activity (cf. disinfectants, which destroy microorganisms found on non-living objects, and antibiotics, which can be transported through the lymphatic system to destroy bacteria within the body)." [] is_a: CHEBI:35441 ! antiinfective agent [Term] id: CHEBI:48219 name: disinfectant def: "An antimicrobial agent that is applied to non-living objects to destroy harmful microorganisms or to inhibit their activity." [] is_a: CHEBI:33281 ! antimicrobial agent [Term] id: CHEBI:48278 name: serotonergic drug is_a: CHEBI:35942 ! neurotransmitter agent [Term] id: CHEBI:48354 name: polar solvent def: "A solvent that is composed of polar molecules. Polar solvents can dissolve ionic compounds or ionisable covalent compounds." [] is_a: CHEBI:46787 ! solvent [Term] id: CHEBI:48356 name: protic solvent def: "A polar solvent that is capable of acting as a hydron (proton) donor." [] is_a: CHEBI:39141 ! Bronsted acid is_a: CHEBI:48354 ! polar solvent [Term] id: CHEBI:48359 name: protophilic solvent def: "Solvent that is capable of acting as a hydron (proton) acceptor." [] is_a: CHEBI:39142 ! Bronsted base is_a: CHEBI:48354 ! polar solvent [Term] id: CHEBI:48360 name: amphiprotic solvent def: "Self-ionizing solvent possessing both characteristics of Bronsted acids and bases." [] is_a: CHEBI:48356 ! protic solvent is_a: CHEBI:48359 ! protophilic solvent [Term] id: CHEBI:48560 name: dopaminergic agent def: "A drug used for its effects on dopamine receptors, on the life cycle of dopamine, or on the survival of dopaminergic neurons." [] is_a: CHEBI:35942 ! neurotransmitter agent [Term] id: CHEBI:48705 name: agonist def: "Substance which binds to cell receptors normally responding to naturally occurring substances and which produces a response of its own." [] is_a: CHEBI:52210 ! pharmacological role [Term] id: CHEBI:48706 name: antagonist def: "Substance that attaches to and blocks cell receptors that normally bind naturally occurring substances." [] is_a: CHEBI:52210 ! pharmacological role [Term] id: CHEBI:49110 name: peripheral nervous system drug def: "A drug that acts principally at one or more sites within the peripheral neuroeffector systems, the autonomic system, and motor nerve-skeletal system." [] is_a: CHEBI:23888 ! drug [Term] id: CHEBI:49637 name: hydrogen atom is_a: CHEBI:24835 ! inorganic molecular entity is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33559 ! s-block element atom relationship: RO:0000087 CHEBI:33937 ! has role macronutrient property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "H" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/H" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "YZCKVEUIGOORGS-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "1.00794" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "1.00783" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H]" xsd:string [Term] id: CHEBI:50047 name: organic amino compound def: "A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35352 ! organonitrogen compound relationship: has_parent_hydride CHEBI:16134 ! ammonia relationship: RO:0000087 CHEBI:39142 ! has role Bronsted base [Term] id: CHEBI:50267 name: protective agent def: "Synthetic or natural substance which is given to prevent a disease or disorder or are used in the process of treating a disease or injury due to a poisonous agent." [] is_a: CHEBI:23888 ! drug [Term] id: CHEBI:50312 name: onium compound is_a: CHEBI:37577 ! heteroatomic molecular entity [Term] id: CHEBI:50313 name: onium cation def: "Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families." [] is_a: CHEBI:50312 ! onium compound [Term] id: CHEBI:50505 name: sweetening agent def: "Substance that sweeten food, beverages, medications, etc." [] is_a: CHEBI:35617 ! flavouring agent [Term] id: CHEBI:50514 name: vasoconstrictor agent def: "Drug used to cause constriction of the blood vessels." [] is_a: CHEBI:35554 ! cardiovascular drug [Term] id: CHEBI:50584 name: alkyl alcohol def: "An aliphatic alcohol in which the aliphatic alkane chain is substituted by a hydroxy group at unspecified position." [] is_a: CHEBI:2571 ! aliphatic alcohol [Term] id: CHEBI:50846 name: immunomodulator def: "Biologically active substance whose activity affects or plays a role in the functioning of the immune system." [] is_a: CHEBI:23888 ! drug is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:50860 name: organic molecular entity def: "Any molecular entity that contains carbon." [] is_a: CHEBI:33582 ! carbon group molecular entity relationship: BFO:0000051 CHEBI:27594 ! has part carbon atom [Term] id: CHEBI:50904 name: allergen def: "A chemical compound, or part thereof, which causes the onset of an allergic reaction by interacting with any of the molecular pathways involved in an allergy." [] is_a: CHEBI:52209 ! aetiopathogenetic role [Term] id: CHEBI:50905 name: teratogenic agent def: "A role played by a chemical compound in biological systems with adverse consequences in embryo developments, leading to birth defects, embryo death or altered development, growth retardation and functional defect." [] is_a: CHEBI:52209 ! aetiopathogenetic role [Term] id: CHEBI:50906 name: role def: "A role is particular behaviour which a material entity may exhibit." [] is_a: PATO:0000001 ! characteristic [Term] id: CHEBI:50910 name: neurotoxin def: "A poison that interferes with the functions of the nervous system." [] is_a: CHEBI:52209 ! aetiopathogenetic role is_a: CHEBI:64909 ! poison [Term] id: CHEBI:50949 name: serotonin uptake inhibitor def: "A compound that specifically inhibits the reuptake of serotonin in the brain. This increases the serotonin concentration in the synaptic cleft which then activates serotonin receptors to a greater extent." [] is_a: CHEBI:48278 ! serotonergic drug [Term] id: CHEBI:50996 name: tertiary amino compound def: "A compound formally derived from ammonia by replacing three hydrogen atoms by organyl groups." [] is_a: CHEBI:50047 ! organic amino compound relationship: is_conjugate_base_of CHEBI:137982 ! tertiary ammonium ion [Term] id: CHEBI:51039 name: dopamine uptake inhibitor def: "A dopaminergic agent that blocks the transport of dopamine into axon terminals or into storage vesicles within terminals. Most of the adrenergic uptake inhibitors also inhibit dopamine uptake." [] is_a: CHEBI:48560 ! dopaminergic agent [Term] id: CHEBI:51086 name: chemical role def: "A role played by the molecular entity or part thereof within a chemical context." [] is_a: CHEBI:50906 ! role [Term] id: CHEBI:51143 name: nitrogen molecular entity is_a: CHEBI:33302 ! pnictogen molecular entity relationship: BFO:0000051 CHEBI:25555 ! has part nitrogen atom [Term] id: CHEBI:51151 name: dipolar compound def: "An organic molecule that is electrically neutral carrying a positive and a negative charge in one of its major canonical descriptions. In most dipolar compounds the charges are delocalized; however the term is also applied to species where this is not the case." [] is_a: CHEBI:72695 ! organic molecule [Term] id: CHEBI:51422 name: organodiyl group def: "Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s)." [] is_a: CHEBI:51446 ! organic divalent group [Term] id: CHEBI:51446 name: organic divalent group is_a: CHEBI:33247 ! organic group [Term] id: CHEBI:51447 name: organic univalent group is_a: CHEBI:33247 ! organic group [Term] id: CHEBI:51958 name: organic polycyclic compound is_a: CHEBI:33635 ! polycyclic compound is_a: CHEBI:33832 ! organic cyclic compound [Term] id: CHEBI:52090 name: methoxide def: "An organic anion that is the conjugate base of methanol." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25696 ! organic anion relationship: is_conjugate_base_of CHEBI:17790 ! methanol relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CH3O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/CH3O/c1-2/h1H3/q-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "NBTOZLQBSIZIKS-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "31.03390" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "31.01894" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C[O-]" xsd:string [Term] id: CHEBI:52092 name: ethoxide def: "An organic anion that is the conjugate base of ethanol." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25696 ! organic anion relationship: is_conjugate_base_of CHEBI:16236 ! ethanol relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C2H5O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C2H5O/c1-2-3/h2H2,1H3/q-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "HHFAWKCIHAUFRX-UHFFFAOYSA-N" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "45.06050" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "45.03459" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "CC[O-]" xsd:string [Term] id: CHEBI:52206 name: biochemical role def: "A biological role played by the molecular entity or part thereof within a biochemical context." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:52208 name: biophysical role is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:52209 name: aetiopathogenetic role def: "A role played by the molecular entity or part thereof which causes the development of a pathological process." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:52210 name: pharmacological role def: "A biological role which describes how a drug interacts within a biological system and how the interactions affect its medicinal properties." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:52211 name: physiological role is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:52217 name: pharmaceutical def: "Any substance introduced into a living organism with therapeutic or diagnostic purpose." [] is_a: CHEBI:33232 ! application [Term] id: CHEBI:52290 name: mitogen def: "A chemical substance that encourages a cell to commence cell division, triggering mitosis." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:52625 name: inorganic hydroxy compound is_a: CHEBI:24651 ! hydroxides is_a: CHEBI:24835 ! inorganic molecular entity [Term] id: CHEBI:53000 name: epitope def: "The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:53309 name: polyanionic macromolecule def: "A polymer carrying multiple negative charges." [] is_a: CHEBI:53368 ! ionic macromolecule [Term] id: CHEBI:53368 name: ionic macromolecule def: "A macromolecule containing ionic groups." [] is_a: CHEBI:33839 ! macromolecule [Term] id: CHEBI:55322 name: mu-opioid receptor agonist def: "A compound that exhibits agonist activity at the mu-opioid receptor." [] is_a: CHEBI:60599 ! mu-opioid agent is_a: CHEBI:60606 ! opioid receptor agonist [Term] id: CHEBI:55505 name: 1,2-benzisothiazole def: "A benzothiazole consisting of a benzene ring fused to an isothiazole." [] is_a: CHEBI:37947 ! benzothiazoles [Term] id: CHEBI:5686 name: heterocyclic compound def: "A cyclic compound having as ring members atoms of at least two different elements." [] is_a: CHEBI:33595 ! cyclic compound [Term] id: CHEBI:57977 name: bilirubin(2-) def: "A dicarboxylic acid dianion obtained by deprotonation of the two carboxy groups of bilirubin; major species at pH 7.3." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:28965 ! dicarboxylic acid dianion is_a: CHEBI:59252 ! linear tetrapyrrole anion relationship: is_conjugate_base_of CHEBI:16990 ! bilirubin IXalpha relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "-2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C33H34N4O6" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-14,34-35H,1-2,9-12,15H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/p-2/b26-13-,27-14-" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "BPYKTIZUTYGOLE-IFADSCNNSA-L" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "582.64630" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "582.24893" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "CC1=C(C=C)\\C(NC1=O)=C\\c1[nH]c(Cc2[nH]c(\\C=C3NC(=O)C(C=C)=C/3C)c(C)c2CCC([O-])=O)c(CCC([O-])=O)c1C" xsd:string [Term] id: CHEBI:58097 name: morphine(1+) def: "The conjugate acid of morphine arising from protonation of the tertiary amino group; major species at pH 7.3." [] is_a: CHEBI:25697 ! organic cation is_a: CHEBI:35274 ! ammonium ion derivative relationship: is_conjugate_acid_of CHEBI:17303 ! morphine property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C17H20NO3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C17H19NO3/c1-18-7-6-17-10-3-5-13(20)16(17)21-15-12(19)4-2-9(14(15)17)8-11(10)18/h2-5,10-11,13,16,19-20H,6-8H2,1H3/p+1/t10-,11+,13-,16-,17-/m0/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "BQJCRHHNABKAKU-KBQPJGBKSA-O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "286.34560" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "286.14377" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][C@]12C=C[C@H](O)[C@@H]3Oc4c(O)ccc5C[C@H]1[NH+](C)CC[C@@]23c45" xsd:string [Term] id: CHEBI:58958 name: organosulfate oxoanion def: "An organic anion of general formula RS(=O)2O(-) where R is an organyl group." [] is_a: CHEBI:25696 ! organic anion is_a: CHEBI:33482 ! sulfur oxoanion relationship: has_functional_parent CHEBI:16189 ! sulfate relationship: is_conjugate_base_of CHEBI:25704 ! organic sulfate property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "O4SR" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "96.06300" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "95.95173" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]S(=O)(=O)O[*]" xsd:string [Term] id: CHEBI:59163 name: biomarker def: "A substance used as an indicator of a biological state." [] is_a: CHEBI:47867 ! indicator [Term] id: CHEBI:59252 name: linear tetrapyrrole anion def: "An organic anion arising from deprotonation of a acyclic tetrapyrrole compound." [] is_a: CHEBI:25696 ! organic anion [Term] id: CHEBI:59740 name: nucleophilic reagent def: "A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons." [] is_a: CHEBI:33893 ! reagent is_a: CHEBI:39144 ! Lewis base [Term] id: CHEBI:59806 name: (S)-nicotinium(1+) def: "The conjugate acid of (S)-nicotine arising from selective protonation of the tertiary amino group; major species at pH 7.3." [] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35274 ! ammonium ion derivative relationship: is_conjugate_acid_of CHEBI:17688 ! (S)-nicotine relationship: is_enantiomer_of CHEBI:79008 ! (R)-nicotinium(1+) relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C10H15N2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/p+1/t10-/m0/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "SNICXCGAKADSCV-JTQLQIEISA-O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "163.23900" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "163.12297" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C[NH+]1CCC[C@H]1c1cccnc1" xsd:string [Term] id: CHEBI:59999 name: chemical substance def: "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types." [] is_a: CHEBI:24431 ! chemical entity [Term] id: CHEBI:60004 name: mixture def: "A mixture is a chemical substance composed of multiple molecules, at least two of which are of a different kind." [] is_a: CHEBI:59999 ! chemical substance [Term] id: CHEBI:60027 name: polymer def: "A polymer is a mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc.." [] is_a: CHEBI:60004 ! mixture relationship: BFO:0000051 CHEBI:33839 ! has part macromolecule [Term] id: CHEBI:60056 name: cocaine(1+) def: "The conjugate base of cocaine arising from protonation of the tertiary amino group; major species at pH 7.3." [] is_a: CHEBI:35274 ! ammonium ion derivative is_a: CHEBI:37332 ! tropane alkaloid relationship: is_conjugate_acid_of CHEBI:27958 ! cocaine relationship: RO:0000087 CHEBI:77746 ! has role human metabolite property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C17H22NO4" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C17H21NO4/c1-18-12-8-9-13(18)15(17(20)21-2)14(10-12)22-16(19)11-6-4-3-5-7-11/h3-7,12-15H,8-10H2,1-2H3/p+1/t12-,13+,14-,15+/m0/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "ZPUCINDJVBIVPJ-LJISPDSOSA-O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "304.36090" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "304.15433" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[H][C@]12CC[C@]([H])([C@H]([C@H](C1)OC(=O)c1ccccc1)C(=O)OC)[NH+]2C" xsd:string [Term] id: CHEBI:60164 name: ionic polymer def: "An ionic polymer is a polymer, composed of ionic macromolecules." [] is_a: CHEBI:60027 ! polymer relationship: BFO:0000051 CHEBI:53368 ! has part ionic macromolecule [Term] id: CHEBI:60242 name: monovalent inorganic cation def: "An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one." [] is_a: CHEBI:36915 ! inorganic cation [Term] id: CHEBI:60466 name: peptide zwitterion def: "Zwitterionic form of any peptide where, in general, the amino terminus is positively charged and the carboxy terminus is negatively charged." [] is_a: CHEBI:27369 ! zwitterion relationship: is_tautomer_of CHEBI:16670 ! peptide property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C2H4NO2R(C2H2NOR)n" xsd:string [Term] id: CHEBI:60598 name: opioid agent def: "Any agent that acts on an opioid receptor or affects the life cycle of an opioid transmitter." [] is_a: CHEBI:35942 ! neurotransmitter agent [Term] id: CHEBI:60599 name: mu-opioid agent def: "Any agent that acts on a mu-opioid receptor." [] is_a: CHEBI:60598 ! opioid agent [Term] id: CHEBI:60606 name: opioid receptor agonist def: "An agent that selectively binds to and activates an opioid receptor." [] is_a: CHEBI:48705 ! agonist is_a: CHEBI:60598 ! opioid agent [Term] id: CHEBI:60643 name: NMDA receptor antagonist def: "Any substance that inhibits the action of N-methyl-D-aspartate (NMDA) receptors. They tend to induce a state known as dissociative anesthesia, marked by catalepsy, amnesia, and analgesia, while side effects can include hallucinations, nightmares, and confusion. Due to their psychotomimetic effects, many NMDA receptor antagonists are used as recreational drugs." [] is_a: CHEBI:60798 ! excitatory amino acid antagonist [Term] id: CHEBI:60798 name: excitatory amino acid antagonist def: "Any substance which inhibits the action of receptors for excitatory amino acids." [] is_a: CHEBI:48706 ! antagonist [Term] id: CHEBI:60911 name: racemate def: "A racemate is an equimolar mixture of a pair of enantiomers." [] is_a: CHEBI:60004 ! mixture [Term] id: CHEBI:61469 name: polyanionic polymer def: "A polymer, composed of polyanion macromolecules." [] is_a: CHEBI:60164 ! ionic polymer relationship: BFO:0000051 CHEBI:53309 ! has part polyanionic macromolecule [Term] id: CHEBI:62732 name: aromatic ester def: "An ester where the ester linkage is bonded directly to an aromatic system." [] is_a: CHEBI:33659 ! organic aromatic compound is_a: CHEBI:35701 ! ester [Term] id: CHEBI:63299 name: carbohydrate derivative def: "Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds." [] is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives relationship: has_functional_parent CHEBI:16646 ! carbohydrate [Term] id: CHEBI:63436 name: carbohydrate acid derivative def: "A carbohydrate derivative that is formally obtained from a carbohydrate acid." [] is_a: CHEBI:63299 ! carbohydrate derivative relationship: has_functional_parent CHEBI:33720 ! carbohydrate acid relationship: is_conjugate_acid_of CHEBI:63551 ! carbohydrate acid derivative anion [Term] id: CHEBI:63551 name: carbohydrate acid derivative anion def: "A carboxylic acid anion resulting from the deprotonation of the carboxy group of a carbohydrate acid derivative." [] is_a: CHEBI:29067 ! carboxylic acid anion relationship: has_functional_parent CHEBI:33721 ! carbohydrate acid anion relationship: is_conjugate_base_of CHEBI:63436 ! carbohydrate acid derivative [Term] id: CHEBI:64018 name: protein kinase C agonist def: "An agonist that selectively binds to and activates a protein kinase C receptor" [] is_a: CHEBI:64106 ! protein kinase agonist [Term] id: CHEBI:64047 name: food additive def: "Any substance which is added to food to preserve or enhance its flavour and/or appearance." [] is_a: CHEBI:33232 ! application is_a: CHEBI:78295 ! food component [Term] id: CHEBI:64106 name: protein kinase agonist def: "An agonist that selectively binds to and activates a protein kinase receptor." [] is_a: CHEBI:48705 ! agonist [Term] id: CHEBI:64708 name: one-carbon compound def: "An organic molecular entity containing a single carbon atom (C1)." [] is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:64709 name: organic acid def: "Any organic molecular entity that is acidic and contains carbon in covalent linkage." [] is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:64909 name: poison def: "Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism." [] is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:65212 name: polysaccharide derivative def: "A carbohydrate derivative that is any derivative of a polysaccharide." [] is_a: CHEBI:167559 ! glycan is_a: CHEBI:33694 ! biomacromolecule is_a: CHEBI:63299 ! carbohydrate derivative relationship: has_functional_parent CHEBI:18154 ! polysaccharide [Term] id: CHEBI:72695 name: organic molecule def: "Any molecule that consists of at least one carbon atom as part of the electrically neutral entity." [] is_a: CHEBI:25367 ! molecule is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:72813 name: exopolysaccharide def: "A biomacromolecule composed of carbohydrate residues which is secreted by a microorganism into the surrounding environment." [] is_a: CHEBI:33694 ! biomacromolecule [Term] id: CHEBI:75763 name: eukaryotic metabolite def: "Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms." [] is_a: CHEBI:25212 ! metabolite [Term] id: CHEBI:75767 name: animal metabolite def: "Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals." [] is_a: CHEBI:75763 ! eukaryotic metabolite [Term] id: CHEBI:75768 name: mammalian metabolite def: "Any animal metabolite produced during a metabolic reaction in mammals." [] is_a: CHEBI:75767 ! animal metabolite [Term] id: CHEBI:75771 name: mouse metabolite def: "Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus)." [] is_a: CHEBI:75768 ! mammalian metabolite [Term] id: CHEBI:75772 name: Saccharomyces cerevisiae metabolite def: "Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae)." [] is_a: CHEBI:76946 ! fungal metabolite [Term] id: CHEBI:75787 name: prokaryotic metabolite def: "Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea." [] is_a: CHEBI:25212 ! metabolite [Term] id: CHEBI:76413 name: greenhouse gas def: "A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'." [] is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:76759 name: EC 3.* (hydrolase) inhibitor def: "Any enzyme inhibitor that interferes with the action of a hydrolase (EC 3.*.*.*)." [] is_a: CHEBI:23924 ! enzyme inhibitor [Term] id: CHEBI:76764 name: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor def: "Any hydrolase inhibitor that interferes with the action of a hydrolase acting on C-N bonds, other than peptide bonds (EC 3.5.*.*)." [] is_a: CHEBI:76759 ! EC 3.* (hydrolase) inhibitor [Term] id: CHEBI:76807 name: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor def: "An EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor that interferes with the action of any non-peptide linear amide C-N hydrolase (EC 3.5.1.*)." [] is_a: CHEBI:76764 ! EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor [Term] id: CHEBI:76924 name: plant metabolite def: "Any eukaryotic metabolite produced during a metabolic reaction in plants, the kingdom that include flowering plants, conifers and other gymnosperms." [] is_a: CHEBI:75763 ! eukaryotic metabolite [Term] id: CHEBI:76946 name: fungal metabolite def: "Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds." [] is_a: CHEBI:75763 ! eukaryotic metabolite [Term] id: CHEBI:76969 name: bacterial metabolite def: "Any prokaryotic metabolite produced during a metabolic reaction in bacteria." [] is_a: CHEBI:75787 ! prokaryotic metabolite [Term] id: CHEBI:76971 name: Escherichia coli metabolite def: "Any bacterial metabolite produced during a metabolic reaction in Escherichia coli." [] is_a: CHEBI:76969 ! bacterial metabolite [Term] id: CHEBI:77746 name: human metabolite def: "Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens)." [] is_a: CHEBI:75768 ! mammalian metabolite [Term] id: CHEBI:77941 name: EC 3.5.1.4 (amidase) inhibitor def: "An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of amidase (EC 3.5.1.4)." [] is_a: CHEBI:76807 ! EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor [Term] id: CHEBI:78295 name: food component def: "A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants." [] is_a: CHEBI:52211 ! physiological role [Term] id: CHEBI:78298 name: environmental contaminant def: "Any minor or unwanted substance introduced into the environment that can have undesired effects." [] is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:78433 name: refrigerant def: "A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a \"R\" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure." [] is_a: CHEBI:33232 ! application [Term] id: CHEBI:78608 name: alpha-amino acid zwitterion def: "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3." [] is_a: CHEBI:35238 ! amino acid zwitterion relationship: is_tautomer_of CHEBI:33704 ! alpha-amino acid property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C2H4NO2R" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "74.059" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "74.02420" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[NH3+]C([*])C([O-])=O" xsd:string [Term] id: CHEBI:78616 name: carbohydrates and carbohydrate derivatives def: "Any organooxygen compound that is a polyhydroxy-aldehyde or -ketone, or a compound derived from one. Carbohydrates contain only carbon, hydrogen and oxygen and usually have an empirical formula Cm(H2O)n; carbohydrate derivatives may contain other elements by substitution or condensation." [] is_a: CHEBI:36963 ! organooxygen compound [Term] id: CHEBI:79008 name: (R)-nicotinium(1+) def: "The conjugate acid of (R)-nicotine arising from selective protonation of the tertiary amino group; major species at pH 7.3." [] is_a: CHEBI:25697 ! organic cation is_a: CHEBI:35274 ! ammonium ion derivative relationship: is_conjugate_acid_of CHEBI:39162 ! (R)-nicotine relationship: is_enantiomer_of CHEBI:59806 ! (S)-nicotinium(1+) property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "C10H15N2" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/p+1/t10-/m1/s1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/inchikey "SNICXCGAKADSCV-SNVBAGLBSA-O" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "163.23900" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "163.12297" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C[NH+]1CCC[C@@H]1c1cccnc1" xsd:string [Term] id: CHEBI:79388 name: divalent inorganic anion def: "Any inorganic anion with a valency of two." [] is_a: CHEBI:24834 ! inorganic anion [Term] id: CHEBI:79389 name: monovalent inorganic anion def: "Any inorganic anion with a valency of one." [] is_a: CHEBI:24834 ! inorganic anion [Term] id: CHEBI:88188 name: drug allergen def: "Any drug which causes the onset of an allergic reaction." [] is_a: CHEBI:23888 ! drug is_a: CHEBI:50904 ! allergen [Term] id: CHEBI:90852 name: N-sulfonylcarboxamide def: "A mixed diacylamine resulting from the formal condensation of the nitrogen of a carboxamide with a sulphonic acid." [] is_a: CHEBI:37716 ! mixed diacylamine property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CNO3SR3" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "106.082" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "105.95989" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C(=O)(N(S(*)(=O)=O)*)*" xsd:string [Term] id: CHEBI:91007 name: aromatic carboxylate def: "A carboxylic acic anion obtained by deprotonation of the carboxy group of any aromatic carboxylic acid. Major species at pH 7.3." [] is_a: CHEBI:29067 ! carboxylic acid anion relationship: is_conjugate_base_of CHEBI:33859 ! aromatic carboxylic acid property_value: http://purl.obolibrary.org/obo/chebi/charge "-1" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/formula "CO2R" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/mass "44.010" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "43.98983" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "*C([O-])=O" xsd:string [Term] id: COB:0000011 name: atom def: "A material entity consisting of exactly one atomic nucleus and the electron(s) orbiting it." [] comment: This atom is closely related to ChEBI's atom, but not exactly equivalent to. is_a: BFO:0000040 ! material entity disjoint_from: COB:0000013 ! molecular entity relationship: BFO:0000051 CHEBI:33252 ! has part atomic nucleus [Term] id: COB:0000013 name: molecular entity def: "A material entity that consists of two or more atoms that are all connected via covalent bonds such that any atom can be transitively connected with any other atom." [] comment: This molecular entity is different than ChEBI's 'molecular entity'. comment: We would like to have cardinality restrictions on the logic, but there are some technical limitations. is_a: BFO:0000040 ! material entity disjoint_from: COB:0000080 ! complex of molecular entities relationship: BFO:0000051 COB:0000011 ! has part atom [Term] id: COB:0000073 name: gene product is_a: COB:0000013 ! molecular entity [Term] id: COB:0000080 name: complex of molecular entities def: "A complex of two or more molecular entities that are not covalently bound." [] is_a: BFO:0000040 ! material entity relationship: BFO:0000051 COB:0000013 {comment=">=2 parts (not we cannot use cardinality with transitive properties)"} ! has part molecular entity [Term] id: GO:0000003 name: reproduction is_a: GO:0008150 ! biological_process [Term] id: GO:0000271 name: polysaccharide biosynthetic process is_a: GO:0005976 ! polysaccharide metabolic process is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0016051 ! carbohydrate biosynthetic process [Term] id: GO:0000272 name: polysaccharide catabolic process is_a: GO:0005976 ! polysaccharide metabolic process is_a: GO:0009057 ! macromolecule catabolic process is_a: GO:0016052 ! carbohydrate catabolic process [Term] id: GO:0001101 name: response to acid chemical comment: This term should be used to describe a response to a specific acid as a chemical. E.g., if an organism were responding to glutamate, then the response would be glutamate-specific; the organism is actually responding to the chemical structure of the anion portion of the dissociated acid. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. If annotating experiments where an acid is playing a role as a proton donor, please annotate to GO:0010447 'response to acidic pH' instead. is_a: GO:0042221 ! response to chemical [Term] id: GO:0001501 name: skeletal system development is_a: GO:0048731 ! system development [Term] id: GO:0001503 name: ossification comment: Note that this term does not have a 'developmental process' parent because ossification isn't necessarily developmental, can also occur as part of bone remodeling. Instead use 'ossification involved in bone maturation ; GO:0043931'. is_a: GO:0032501 ! multicellular organismal process [Term] id: GO:0001659 name: temperature homeostasis is_a: GO:0048871 ! multicellular organismal-level homeostasis [Term] id: GO:0001667 name: ameboidal-type cell migration comment: Note that this term refers to a mode of migration rather than to any particular cell type. is_a: GO:0016477 ! cell migration [Term] id: GO:0001696 name: gastric acid secretion is_a: GO:0022600 ! digestive system process is_a: GO:0046717 ! acid secretion [Term] id: GO:0001704 name: formation of primary germ layer is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis relationship: BFO:0000050 GO:0007369 ! part of gastrulation [Term] id: GO:0001705 name: ectoderm formation is_a: GO:0001704 ! formation of primary germ layer relationship: BFO:0000050 GO:0007398 ! part of ectoderm development [Term] id: GO:0001706 name: endoderm formation is_a: GO:0001704 ! formation of primary germ layer relationship: BFO:0000050 GO:0007492 ! part of endoderm development [Term] id: GO:0001707 name: mesoderm formation is_a: GO:0001704 ! formation of primary germ layer relationship: BFO:0000050 GO:0048332 ! part of mesoderm morphogenesis [Term] id: GO:0001763 name: morphogenesis of a branching structure is_a: GO:0009653 ! anatomical structure morphogenesis is_a: GO:0032501 ! multicellular organismal process [Term] id: GO:0001820 name: serotonin secretion is_a: GO:0006837 ! serotonin transport is_a: GO:0023061 ! signal release [Term] id: GO:0001838 name: embryonic epithelial tube formation is_a: GO:0072175 ! epithelial tube formation relationship: BFO:0000050 GO:0016331 ! part of morphogenesis of embryonic epithelium [Term] id: GO:0001841 name: neural tube formation is_a: GO:0001838 ! embryonic epithelial tube formation relationship: BFO:0000050 GO:0021915 ! part of neural tube development [Term] id: GO:0001957 name: intramembranous ossification comment: An instance of intramembranous ossification may also be classified as metaplastic; the former classifies based on tissue type location, and the latter based on mechanism/cell division. is_a: GO:0036072 ! direct ossification [Term] id: GO:0002009 name: morphogenesis of an epithelium is_a: GO:0048729 ! tissue morphogenesis relationship: BFO:0000050 GO:0060429 ! part of epithelium development [Term] id: GO:0002027 name: regulation of heart rate is_a: GO:0008016 ! regulation of heart contraction is_a: GO:0065008 ! regulation of biological quality [Term] id: GO:0002053 name: positive regulation of mesenchymal cell proliferation is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0010464 ! regulation of mesenchymal cell proliferation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0010463 ! positively regulates mesenchymal cell proliferation relationship: RO:0002213 GO:0010463 ! positively regulates mesenchymal cell proliferation [Term] id: GO:0002087 name: regulation of respiratory gaseous exchange by nervous system process is_a: GO:0044065 ! regulation of respiratory system process is_a: GO:0050877 ! nervous system process intersection_of: GO:0050877 ! nervous system process intersection_of: RO:0002211 GO:0007585 ! regulates respiratory gaseous exchange by respiratory system [Term] id: GO:0002118 name: aggressive behavior is_a: GO:0007610 ! behavior [Term] id: GO:0002119 name: nematode larval development is_a: GO:0002164 ! larval development [Term] id: GO:0002120 name: obsolete predatory behavior comment: This term was obsoleted because it is outside the scope of GO. property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/18568" xsd:anyURI is_obsolete: true [Term] id: GO:0002164 name: larval development is_a: GO:0007275 ! multicellular organism development is_a: GO:0009791 ! post-embryonic development [Term] id: GO:0002251 name: organ or tissue specific immune response is_a: GO:0006955 ! immune response [Term] id: GO:0002376 name: immune system process comment: Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). is_a: GO:0008150 ! biological_process property_value: RO:0002161 NCBITaxon:4895 [Term] id: GO:0002384 name: hepatic immune response is_a: GO:0002251 ! organ or tissue specific immune response [Term] id: GO:0002682 name: regulation of immune system process is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0002376 ! regulates immune system process relationship: RO:0002211 GO:0002376 ! regulates immune system process [Term] id: GO:0002683 name: negative regulation of immune system process is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0002376 ! negatively regulates immune system process relationship: RO:0002212 GO:0002376 ! negatively regulates immune system process [Term] id: GO:0002684 name: positive regulation of immune system process is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0002376 ! positively regulates immune system process relationship: RO:0002213 GO:0002376 ! positively regulates immune system process [Term] id: GO:0002790 name: peptide secretion is_a: GO:0015833 ! peptide transport is_a: GO:0046903 ! secretion [Term] id: GO:0002791 name: regulation of peptide secretion is_a: GO:0051046 ! regulation of secretion is_a: GO:0090087 ! regulation of peptide transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0002790 ! regulates peptide secretion relationship: RO:0002211 GO:0002790 ! regulates peptide secretion [Term] id: GO:0002792 name: negative regulation of peptide secretion is_a: GO:0002791 ! regulation of peptide secretion is_a: GO:0051048 ! negative regulation of secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0002790 ! negatively regulates peptide secretion relationship: RO:0002212 GO:0002790 ! negatively regulates peptide secretion [Term] id: GO:0002793 name: positive regulation of peptide secretion is_a: GO:0002791 ! regulation of peptide secretion is_a: GO:0051047 ! positive regulation of secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0002790 ! positively regulates peptide secretion relationship: RO:0002213 GO:0002790 ! positively regulates peptide secretion [Term] id: GO:0003006 name: developmental process involved in reproduction is_a: GO:0022414 ! reproductive process is_a: GO:0032502 ! developmental process intersection_of: GO:0032502 ! developmental process intersection_of: BFO:0000050 GO:0000003 ! part of reproduction [Term] id: GO:0003008 name: system process is_a: GO:0032501 ! multicellular organismal process [Term] id: GO:0003012 name: muscle system process is_a: GO:0003008 ! system process [Term] id: GO:0003013 name: circulatory system process is_a: GO:0003008 ! system process [Term] id: GO:0003014 name: renal system process is_a: GO:0003008 ! system process [Term] id: GO:0003015 name: heart process is_a: GO:0003013 ! circulatory system process [Term] id: GO:0003016 name: respiratory system process is_a: GO:0003008 ! system process relationship: BFO:0000050 GO:0007585 ! part of respiratory gaseous exchange by respiratory system [Term] id: GO:0003674 name: gene product or complex activity name: molecular_function comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. comment: This is the same as GO molecular function is_a: BFO:0000015 ! process disjoint_from: GO:0008150 ! biological_process [Term] id: GO:0003824 name: catalytic activity is_a: GO:0003674 ! molecular_function [Term] id: GO:0005575 name: cellular_component comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. [Term] id: GO:0005576 name: extracellular region comment: Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'. is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0005577 name: fibrinogen complex is_a: GO:0032991 ! protein-containing complex relationship: BFO:0000050 GO:0005615 ! part of extracellular space [Term] id: GO:0005581 name: collagen trimer is_a: GO:0032991 ! protein-containing complex [Term] id: GO:0005583 name: fibrillar collagen trimer is_a: GO:0005581 ! collagen trimer intersection_of: GO:0005581 ! collagen trimer intersection_of: BFO:0000050 GO:0098643 ! part of banded collagen fibril disjoint_from: GO:0030936 ! transmembrane collagen trimer relationship: BFO:0000050 GO:0098643 ! part of banded collagen fibril [Term] id: GO:0005585 name: collagen type II trimer is_a: GO:0005583 ! fibrillar collagen trimer [Term] id: GO:0005587 name: collagen type IV trimer is_a: GO:0098642 ! network-forming collagen trimer is_a: GO:0098651 ! basement membrane collagen trimer [Term] id: GO:0005604 name: basement membrane comment: Note that this term has no relationship to 'membrane ; GO:0016020' because the basement membrane is not a lipid bilayer. is_a: GO:0062023 ! collagen-containing extracellular matrix [Term] id: GO:0005615 name: extracellular space comment: Note that for multicellular organisms, the extracellular space refers to everything outside a cell, but still within the organism (excluding the extracellular matrix). Gene products from a multi-cellular organism that are secreted from a cell into the interstitial fluid or blood can therefore be annotated to this term. is_a: GO:0110165 ! cellular anatomical entity relationship: BFO:0000050 GO:0005576 ! part of extracellular region [Term] id: GO:0005622 name: intracellular anatomical structure is_a: GO:0110165 ! cellular anatomical entity property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/17776" xsd:anyURI [Term] id: GO:0005737 name: cytoplasm is_a: GO:0110165 ! cellular anatomical entity relationship: BFO:0000050 GO:0005622 ! part of intracellular anatomical structure property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/23023" xsd:anyURI [Term] id: GO:0005856 name: cytoskeleton is_a: GO:0043232 ! intracellular non-membrane-bounded organelle [Term] id: GO:0005884 name: actin filament is_a: GO:0099513 ! polymeric cytoskeletal fiber relationship: BFO:0000050 GO:0015629 ! part of actin cytoskeleton [Term] id: GO:0005886 name: plasma membrane is_a: GO:0016020 ! membrane relationship: BFO:0000050 GO:0071944 ! part of cell periphery [Term] id: GO:0005902 name: microvillus comment: Note that this term refers to a projection from a single cell, and should not be confused with 'microvillus' as used to refer to a multicellular structure such as that found in the placenta. is_a: GO:0098858 ! actin-based cell projection relationship: BFO:0000051 GO:0032432 ! has part actin filament bundle property_value: RO:0002161 NCBITaxon:4751 [Term] id: GO:0005911 name: cell-cell junction is_a: GO:0070161 ! anchoring junction property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22122" xsd:anyURI [Term] id: GO:0005938 name: cell cortex is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: BFO:0000050 GO:0071944 ! part of cell periphery relationship: BFO:0000050 GO:0071944 ! part of cell periphery [Term] id: GO:0005975 name: carbohydrate metabolic process is_a: GO:0044238 ! primary metabolic process is_a: GO:0071704 ! organic substance metabolic process property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22880" xsd:anyURI [Term] id: GO:0005976 name: polysaccharide metabolic process is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:0043170 ! macromolecule metabolic process [Term] id: GO:0005977 name: glycogen metabolic process is_a: GO:0006112 ! energy reserve metabolic process is_a: GO:0044042 ! glucan metabolic process [Term] id: GO:0005978 name: glycogen biosynthetic process is_a: GO:0005977 ! glycogen metabolic process is_a: GO:0009250 ! glucan biosynthetic process [Term] id: GO:0005979 name: regulation of glycogen biosynthetic process is_a: GO:0010962 ! regulation of glucan biosynthetic process is_a: GO:0070873 ! regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0005978 ! regulates glycogen biosynthetic process relationship: RO:0002211 GO:0005978 ! regulates glycogen biosynthetic process [Term] id: GO:0005980 name: glycogen catabolic process is_a: GO:0005977 ! glycogen metabolic process is_a: GO:0009251 ! glucan catabolic process [Term] id: GO:0005981 name: regulation of glycogen catabolic process is_a: GO:0043470 ! regulation of carbohydrate catabolic process is_a: GO:0070873 ! regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0005980 ! regulates glycogen catabolic process relationship: RO:0002211 GO:0005980 ! regulates glycogen catabolic process [Term] id: GO:0005996 name: monosaccharide metabolic process is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:0044281 ! small molecule metabolic process [Term] id: GO:0006006 name: glucose metabolic process is_a: GO:0019318 ! hexose metabolic process [Term] id: GO:0006082 name: organic acid metabolic process is_a: GO:0044237 ! cellular metabolic process is_a: GO:0044281 ! small molecule metabolic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:0006091 name: generation of precursor metabolites and energy is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0006109 name: regulation of carbohydrate metabolic process is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0005975 ! regulates carbohydrate metabolic process relationship: RO:0002211 GO:0005975 ! regulates carbohydrate metabolic process [Term] id: GO:0006112 name: energy reserve metabolic process is_a: GO:0015980 ! energy derivation by oxidation of organic compounds [Term] id: GO:0006629 name: lipid metabolic process is_a: GO:0044238 ! primary metabolic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:0006694 name: steroid biosynthetic process is_a: GO:0008202 ! steroid metabolic process is_a: GO:0008610 ! lipid biosynthetic process is_a: GO:1901362 ! organic cyclic compound biosynthetic process [Term] id: GO:0006699 name: bile acid biosynthetic process is_a: GO:0006694 ! steroid biosynthetic process is_a: GO:0008206 ! bile acid metabolic process is_a: GO:0072330 ! monocarboxylic acid biosynthetic process is_a: GO:1901617 ! organic hydroxy compound biosynthetic process [Term] id: GO:0006793 name: phosphorus metabolic process is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0006796 name: phosphate-containing compound metabolic process is_a: GO:0006793 ! phosphorus metabolic process [Term] id: GO:0006810 name: transport comment: Note that this term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term, for e.g. to transmembrane transport, to microtubule-based transport or to vesicle-mediated transport. is_a: GO:0051234 ! establishment of localization property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/20292" xsd:anyURI [Term] id: GO:0006811 name: monoatomic ion transport is_a: GO:0006810 ! transport [Term] id: GO:0006837 name: serotonin transport is_a: GO:0015844 ! monoamine transport is_a: GO:0015850 ! organic hydroxy compound transport [Term] id: GO:0006858 name: extracellular transport is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: BFO:0000066 GO:0005576 ! occurs in extracellular region relationship: BFO:0000066 GO:0005576 ! occurs in extracellular region [Term] id: GO:0006869 name: lipid transport is_a: GO:0071702 ! organic substance transport relationship: BFO:0000050 GO:0010876 ! part of lipid localization [Term] id: GO:0006886 name: intracellular protein transport is_a: GO:0015031 ! protein transport is_a: GO:0046907 ! intracellular transport relationship: BFO:0000050 GO:0008104 ! part of protein localization [Term] id: GO:0006936 name: muscle contraction is_a: GO:0003012 ! muscle system process [Term] id: GO:0006937 name: regulation of muscle contraction is_a: GO:0090257 ! regulation of muscle system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006936 ! regulates muscle contraction relationship: RO:0002211 GO:0006936 ! regulates muscle contraction [Term] id: GO:0006939 name: smooth muscle contraction is_a: GO:0006936 ! muscle contraction [Term] id: GO:0006940 name: regulation of smooth muscle contraction is_a: GO:0006937 ! regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006939 ! regulates smooth muscle contraction relationship: RO:0002211 GO:0006939 ! regulates smooth muscle contraction [Term] id: GO:0006950 name: response to stress comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0050896 ! response to stimulus [Term] id: GO:0006955 name: immune response is_a: GO:0002376 ! immune system process is_a: GO:0050896 ! response to stimulus [Term] id: GO:0007154 name: cell communication is_a: GO:0009987 ! cellular process [Term] id: GO:0007267 name: cell-cell signaling is_a: GO:0007154 ! cell communication is_a: GO:0023052 ! signaling [Term] id: GO:0007275 name: multicellular organism development comment: Note that this term was 'developmental process'. is_a: GO:0032501 ! multicellular organismal process is_a: GO:0048856 ! anatomical structure development property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/21234" xsd:anyURI [Term] id: GO:0007276 name: gamete generation is_a: GO:0048609 ! multicellular organismal reproductive process relationship: BFO:0000050 GO:0019953 ! part of sexual reproduction property_value: RO:0002161 NCBITaxon_Union:0000023 [Term] id: GO:0007369 name: gastrulation is_a: GO:0048598 ! embryonic morphogenesis relationship: BFO:0000051 GO:0001705 ! has part ectoderm formation relationship: BFO:0000051 GO:0001706 ! has part endoderm formation relationship: BFO:0000051 GO:0001707 ! has part mesoderm formation [Term] id: GO:0007398 name: ectoderm development is_a: GO:0009888 ! tissue development [Term] id: GO:0007399 name: nervous system development is_a: GO:0048731 ! system development [Term] id: GO:0007492 name: endoderm development is_a: GO:0009888 ! tissue development [Term] id: GO:0007498 name: mesoderm development is_a: GO:0009888 ! tissue development [Term] id: GO:0007585 name: respiratory gaseous exchange by respiratory system is_a: GO:0032501 ! multicellular organismal process [Term] id: GO:0007586 name: digestion is_a: GO:0032501 ! multicellular organismal process [Term] id: GO:0007588 name: excretion is_a: GO:0003008 ! system process property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22368" xsd:anyURI [Term] id: GO:0007589 name: body fluid secretion is_a: GO:0046903 ! secretion is_a: GO:0050878 ! regulation of body fluid levels [Term] id: GO:0007600 name: sensory perception is_a: GO:0050877 ! nervous system process [Term] id: GO:0007601 name: visual perception is_a: GO:0050953 ! sensory perception of light stimulus [Term] id: GO:0007605 name: sensory perception of sound is_a: GO:0050954 ! sensory perception of mechanical stimulus [Term] id: GO:0007606 name: sensory perception of chemical stimulus is_a: GO:0007600 ! sensory perception [Term] id: GO:0007608 name: sensory perception of smell is_a: GO:0007606 ! sensory perception of chemical stimulus [Term] id: GO:0007610 name: behavior comment: 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews.\n2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis). is_a: GO:0032501 ! multicellular organismal process disjoint_from: GO:0032502 ! developmental process [Term] id: GO:0007617 name: mating behavior is_a: GO:0019098 ! reproductive behavior [Term] id: GO:0007619 name: courtship behavior is_a: GO:0007617 ! mating behavior [Term] id: GO:0007620 name: copulation is_a: GO:0007617 ! mating behavior [Term] id: GO:0007622 name: rhythmic behavior is_a: GO:0007610 ! behavior [Term] id: GO:0007623 name: circadian rhythm is_a: GO:0048511 ! rhythmic process [Term] id: GO:0007625 name: grooming behavior synonym: "groom" EXACT [] is_a: GO:0007610 ! behavior [Term] id: GO:0007626 name: locomotory behavior is_a: GO:0007610 ! behavior [Term] id: GO:0007629 name: flight behavior synonym: "fly" EXACT [] is_a: GO:0008344 ! adult locomotory behavior [Term] id: GO:0007631 name: feeding behavior comment: See also the biological process term 'behavior ; GO:0007610'. is_a: GO:0007610 ! behavior property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/18547" xsd:anyURI [Term] id: GO:0007632 name: visual behavior is_a: GO:0007610 ! behavior is_a: GO:0009416 ! response to light stimulus [Term] id: GO:0007635 name: chemosensory behavior is_a: GO:0007610 ! behavior relationship: BFO:0000050 GO:0042221 ! part of response to chemical [Term] id: GO:0007638 name: mechanosensory behavior is_a: GO:0007610 ! behavior relationship: BFO:0000050 GO:0009612 ! part of response to mechanical stimulus [Term] id: GO:0008015 name: blood circulation is_a: GO:0003013 ! circulatory system process [Term] id: GO:0008016 name: regulation of heart contraction is_a: GO:1903522 ! regulation of blood circulation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0060047 ! regulates heart contraction relationship: RO:0002211 GO:0060047 ! regulates heart contraction [Term] id: GO:0008049 name: male courtship behavior is_a: GO:0007619 ! courtship behavior is_a: GO:0060179 ! male mating behavior [Term] id: GO:0008050 name: female courtship behavior is_a: GO:0007619 ! courtship behavior is_a: GO:0060180 ! female mating behavior [Term] id: GO:0008104 name: protein localization is_a: GO:0070727 ! cellular macromolecule localization property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI [Term] id: GO:0008150 name: biological process name: biological_process def: "A process that emerges from two or more causally-connected macromolecular activities and has evolved to achieve a biological objective." [] comment: A biological process is an evolved process comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. is_a: BFO:0000015 ! process relationship: BFO:0000051 GO:0003674 ! has part molecular_function property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/24968" xsd:anyURI [Term] id: GO:0008152 name: metabolic process comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. is_a: GO:0008150 ! biological_process disjoint_from: GO:0051179 ! localization [Term] id: GO:0008202 name: steroid metabolic process is_a: GO:0006629 ! lipid metabolic process is_a: GO:1901360 ! organic cyclic compound metabolic process [Term] id: GO:0008206 name: bile acid metabolic process is_a: GO:0008202 ! steroid metabolic process is_a: GO:0032787 ! monocarboxylic acid metabolic process is_a: GO:1901615 ! organic hydroxy compound metabolic process [Term] id: GO:0008283 name: cell population proliferation comment: This term was moved out from being a child of 'cellular process' because it is a cell population-level process, and cellular processes are restricted to those processes that involve individual cells. Also note that this term is intended to be used for the proliferation of cells within a multicellular organism, not for the expansion of a population of single-celled organisms. is_a: GO:0009987 ! cellular process property_value: RO:0002161 NCBITaxon:4751 [Term] id: GO:0008284 name: positive regulation of cell population proliferation is_a: GO:0042127 ! regulation of cell population proliferation is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0008283 ! positively regulates cell population proliferation relationship: RO:0002213 GO:0008283 ! positively regulates cell population proliferation property_value: RO:0002161 NCBITaxon:4751 [Term] id: GO:0008285 name: negative regulation of cell population proliferation is_a: GO:0042127 ! regulation of cell population proliferation is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0008283 ! negatively regulates cell population proliferation relationship: RO:0002212 GO:0008283 ! negatively regulates cell population proliferation property_value: RO:0002161 NCBITaxon:4751 [Term] id: GO:0008344 name: adult locomotory behavior comment: See also the biological process term 'locomotory behavior ; GO:0007626'. is_a: GO:0007626 ! locomotory behavior is_a: GO:0030534 ! adult behavior [Term] id: GO:0008610 name: lipid biosynthetic process is_a: GO:0006629 ! lipid metabolic process is_a: GO:1901576 ! organic substance biosynthetic process [Term] id: GO:0009056 name: catabolic process is_a: GO:0008152 ! metabolic process [Term] id: GO:0009057 name: macromolecule catabolic process is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:1901575 ! organic substance catabolic process [Term] id: GO:0009058 name: biosynthetic process is_a: GO:0008152 ! metabolic process [Term] id: GO:0009059 name: macromolecule biosynthetic process is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:1901576 ! organic substance biosynthetic process property_value: IAO:0000233 "http://amigo.geneontology.org/amigo/term/GO:0070589" xsd:anyURI [Term] id: GO:0009250 name: glucan biosynthetic process is_a: GO:0000271 ! polysaccharide biosynthetic process is_a: GO:0044042 ! glucan metabolic process [Term] id: GO:0009251 name: glucan catabolic process is_a: GO:0000272 ! polysaccharide catabolic process is_a: GO:0044042 ! glucan metabolic process [Term] id: GO:0009266 name: response to temperature stimulus is_a: GO:0009628 ! response to abiotic stimulus [Term] id: GO:0009306 name: protein secretion is_a: GO:0015031 ! protein transport is_a: GO:0032940 ! secretion by cell is_a: GO:0035592 ! establishment of protein localization to extracellular region [Term] id: GO:0009314 name: response to radiation comment: Note that 'radiation' refers to electromagnetic radiation of any wavelength. is_a: GO:0009628 ! response to abiotic stimulus [Term] id: GO:0009414 name: response to water deprivation is_a: GO:0006950 ! response to stress is_a: GO:0009415 ! response to water [Term] id: GO:0009415 name: response to water is_a: GO:0001101 ! response to acid chemical is_a: GO:0009628 ! response to abiotic stimulus is_a: GO:0010033 ! response to organic substance is_a: GO:0010035 ! response to inorganic substance is_a: GO:1901700 ! response to oxygen-containing compound is_a: GO:1902074 ! response to salt [Term] id: GO:0009416 name: response to light stimulus is_a: GO:0009314 ! response to radiation [Term] id: GO:0009581 name: detection of external stimulus is_a: GO:0009605 ! response to external stimulus is_a: GO:0051606 ! detection of stimulus [Term] id: GO:0009582 name: detection of abiotic stimulus is_a: GO:0009628 ! response to abiotic stimulus is_a: GO:0051606 ! detection of stimulus [Term] id: GO:0009583 name: detection of light stimulus is_a: GO:0009416 ! response to light stimulus is_a: GO:0009581 ! detection of external stimulus is_a: GO:0009582 ! detection of abiotic stimulus [Term] id: GO:0009584 name: detection of visible light is_a: GO:0009583 ! detection of light stimulus [Term] id: GO:0009593 name: detection of chemical stimulus is_a: GO:0051606 ! detection of stimulus relationship: BFO:0000050 GO:0042221 ! part of response to chemical [Term] id: GO:0009605 name: response to external stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0050896 ! response to stimulus [Term] id: GO:0009612 name: response to mechanical stimulus is_a: GO:0009605 ! response to external stimulus is_a: GO:0009628 ! response to abiotic stimulus [Term] id: GO:0009628 name: response to abiotic stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0050896 ! response to stimulus property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/16572" xsd:anyURI [Term] id: GO:0009653 name: anatomical structure morphogenesis is_a: GO:0032502 ! developmental process relationship: BFO:0000050 GO:0048856 ! part of anatomical structure development [Term] id: GO:0009790 name: embryo development is_a: GO:0007275 ! multicellular organism development [Term] id: GO:0009791 name: post-embryonic development is_a: GO:0032501 ! multicellular organismal process relationship: BFO:0000050 GO:0007275 ! part of multicellular organism development [Term] id: GO:0009792 name: embryo development ending in birth or egg hatching is_a: GO:0009790 ! embryo development [Term] id: GO:0009888 name: tissue development is_a: GO:0048856 ! anatomical structure development property_value: RO:0002161 NCBITaxon:147554 property_value: RO:0002161 NCBITaxon:33630 property_value: RO:0002161 NCBITaxon:33682 property_value: RO:0002161 NCBITaxon:38254 property_value: RO:0002161 NCBITaxon:4891 [Term] id: GO:0009889 name: regulation of biosynthetic process is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009058 ! regulates biosynthetic process relationship: RO:0002211 GO:0009058 ! regulates biosynthetic process [Term] id: GO:0009890 name: negative regulation of biosynthetic process is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0009892 ! negative regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0009058 ! negatively regulates biosynthetic process relationship: RO:0002212 GO:0009058 ! negatively regulates biosynthetic process [Term] id: GO:0009891 name: positive regulation of biosynthetic process is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0009893 ! positive regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009058 ! positively regulates biosynthetic process relationship: RO:0002213 GO:0009058 ! positively regulates biosynthetic process [Term] id: GO:0009892 name: negative regulation of metabolic process is_a: GO:0019222 ! regulation of metabolic process is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0008152 ! negatively regulates metabolic process relationship: RO:0002212 GO:0008152 ! negatively regulates metabolic process [Term] id: GO:0009893 name: positive regulation of metabolic process is_a: GO:0019222 ! regulation of metabolic process is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0008152 ! positively regulates metabolic process relationship: RO:0002213 GO:0008152 ! positively regulates metabolic process [Term] id: GO:0009894 name: regulation of catabolic process is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009056 ! regulates catabolic process relationship: RO:0002211 GO:0009056 ! regulates catabolic process [Term] id: GO:0009895 name: negative regulation of catabolic process is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0009894 ! regulation of catabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0009056 ! negatively regulates catabolic process relationship: RO:0002212 GO:0009056 ! negatively regulates catabolic process [Term] id: GO:0009896 name: positive regulation of catabolic process is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0009894 ! regulation of catabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009056 ! positively regulates catabolic process relationship: RO:0002213 GO:0009056 ! positively regulates catabolic process [Term] id: GO:0009914 name: hormone transport is_a: GO:0006810 ! transport is_a: GO:0010817 ! regulation of hormone levels [Term] id: GO:0009987 name: cellular process comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term. is_a: GO:0008150 ! biological_process [Term] id: GO:0010033 name: response to organic substance is_a: GO:0042221 ! response to chemical [Term] id: GO:0010035 name: response to inorganic substance is_a: GO:0042221 ! response to chemical [Term] id: GO:0010463 name: mesenchymal cell proliferation is_a: GO:0008283 ! cell population proliferation [Term] id: GO:0010464 name: regulation of mesenchymal cell proliferation is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0010463 ! regulates mesenchymal cell proliferation relationship: RO:0002211 GO:0010463 ! regulates mesenchymal cell proliferation [Term] id: GO:0010470 name: regulation of gastrulation is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:0045995 ! regulation of embryonic development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007369 ! regulates gastrulation relationship: RO:0002211 GO:0007369 ! regulates gastrulation [Term] id: GO:0010556 name: regulation of macromolecule biosynthetic process is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009059 ! regulates macromolecule biosynthetic process relationship: RO:0002211 GO:0009059 ! regulates macromolecule biosynthetic process [Term] id: GO:0010557 name: positive regulation of macromolecule biosynthetic process is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:0010604 ! positive regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009059 ! positively regulates macromolecule biosynthetic process relationship: RO:0002213 GO:0009059 ! positively regulates macromolecule biosynthetic process [Term] id: GO:0010558 name: negative regulation of macromolecule biosynthetic process is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:0010605 ! negative regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0009059 ! negatively regulates macromolecule biosynthetic process relationship: RO:0002212 GO:0009059 ! negatively regulates macromolecule biosynthetic process [Term] id: GO:0010562 name: positive regulation of phosphorus metabolic process is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0051174 ! regulation of phosphorus metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006793 ! positively regulates phosphorus metabolic process relationship: RO:0002213 GO:0006793 ! positively regulates phosphorus metabolic process [Term] id: GO:0010563 name: negative regulation of phosphorus metabolic process is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0051174 ! regulation of phosphorus metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006793 ! negatively regulates phosphorus metabolic process relationship: RO:0002212 GO:0006793 ! negatively regulates phosphorus metabolic process [Term] id: GO:0010565 name: regulation of cellular ketone metabolic process is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0042180 ! regulates cellular ketone metabolic process relationship: RO:0002211 GO:0042180 ! regulates cellular ketone metabolic process [Term] id: GO:0010604 name: positive regulation of macromolecule metabolic process is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0043170 ! positively regulates macromolecule metabolic process relationship: RO:0002213 GO:0043170 ! positively regulates macromolecule metabolic process [Term] id: GO:0010605 name: negative regulation of macromolecule metabolic process is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0043170 ! negatively regulates macromolecule metabolic process relationship: RO:0002212 GO:0043170 ! negatively regulates macromolecule metabolic process [Term] id: GO:0010646 name: regulation of cell communication is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007154 ! regulates cell communication relationship: RO:0002211 GO:0007154 ! regulates cell communication [Term] id: GO:0010647 name: positive regulation of cell communication is_a: GO:0010646 ! regulation of cell communication is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007154 ! positively regulates cell communication relationship: RO:0002213 GO:0007154 ! positively regulates cell communication [Term] id: GO:0010648 name: negative regulation of cell communication is_a: GO:0010646 ! regulation of cell communication is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007154 ! negatively regulates cell communication relationship: RO:0002212 GO:0007154 ! negatively regulates cell communication [Term] id: GO:0010700 name: negative regulation of norepinephrine secretion is_a: GO:0014061 ! regulation of norepinephrine secretion is_a: GO:0033604 ! negative regulation of catecholamine secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0048243 ! negatively regulates norepinephrine secretion relationship: RO:0002212 GO:0048243 ! negatively regulates norepinephrine secretion [Term] id: GO:0010701 name: positive regulation of norepinephrine secretion is_a: GO:0014061 ! regulation of norepinephrine secretion is_a: GO:0033605 ! positive regulation of catecholamine secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0048243 ! positively regulates norepinephrine secretion relationship: RO:0002213 GO:0048243 ! positively regulates norepinephrine secretion [Term] id: GO:0010817 name: regulation of hormone levels is_a: GO:0065008 ! regulation of biological quality [Term] id: GO:0010876 name: lipid localization is_a: GO:0033036 ! macromolecule localization [Term] id: GO:0010893 name: positive regulation of steroid biosynthetic process is_a: GO:0045940 ! positive regulation of steroid metabolic process is_a: GO:0046889 ! positive regulation of lipid biosynthetic process is_a: GO:0050810 ! regulation of steroid biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006694 ! positively regulates steroid biosynthetic process relationship: RO:0002213 GO:0006694 ! positively regulates steroid biosynthetic process [Term] id: GO:0010894 name: negative regulation of steroid biosynthetic process is_a: GO:0045939 ! negative regulation of steroid metabolic process is_a: GO:0050810 ! regulation of steroid biosynthetic process is_a: GO:0051055 ! negative regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006694 ! negatively regulates steroid biosynthetic process relationship: RO:0002212 GO:0006694 ! negatively regulates steroid biosynthetic process [Term] id: GO:0010906 name: regulation of glucose metabolic process is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006006 ! regulates glucose metabolic process relationship: RO:0002211 GO:0006006 ! regulates glucose metabolic process [Term] id: GO:0010907 name: positive regulation of glucose metabolic process is_a: GO:0010906 ! regulation of glucose metabolic process is_a: GO:0045913 ! positive regulation of carbohydrate metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006006 ! positively regulates glucose metabolic process relationship: RO:0002213 GO:0006006 ! positively regulates glucose metabolic process [Term] id: GO:0010962 name: regulation of glucan biosynthetic process is_a: GO:0032885 ! regulation of polysaccharide biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009250 ! regulates glucan biosynthetic process relationship: RO:0002211 GO:0009250 ! regulates glucan biosynthetic process [Term] id: GO:0010996 name: response to auditory stimulus is_a: GO:0009612 ! response to mechanical stimulus [Term] id: GO:0012506 name: vesicle membrane is_a: GO:0031090 ! organelle membrane intersection_of: GO:0016020 ! membrane intersection_of: BFO:0000050 GO:0031982 ! part of vesicle relationship: BFO:0000050 GO:0031982 ! part of vesicle [Term] id: GO:0014061 name: regulation of norepinephrine secretion is_a: GO:0050433 ! regulation of catecholamine secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0048243 ! regulates norepinephrine secretion relationship: RO:0002211 GO:0048243 ! regulates norepinephrine secretion [Term] id: GO:0014062 name: regulation of serotonin secretion is_a: GO:0043269 ! regulation of monoatomic ion transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0001820 ! regulates serotonin secretion relationship: RO:0002211 GO:0001820 ! regulates serotonin secretion [Term] id: GO:0014063 name: negative regulation of serotonin secretion is_a: GO:0014062 ! regulation of serotonin secretion is_a: GO:0043271 ! negative regulation of monoatomic ion transport is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0001820 ! negatively regulates serotonin secretion relationship: RO:0002212 GO:0001820 ! negatively regulates serotonin secretion [Term] id: GO:0014064 name: positive regulation of serotonin secretion is_a: GO:0014062 ! regulation of serotonin secretion is_a: GO:0043270 ! positive regulation of monoatomic ion transport is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0001820 ! positively regulates serotonin secretion relationship: RO:0002213 GO:0001820 ! positively regulates serotonin secretion [Term] id: GO:0014821 name: phasic smooth muscle contraction is_a: GO:0006939 ! smooth muscle contraction [Term] id: GO:0014832 name: urinary bladder smooth muscle contraction is_a: GO:0014848 ! urinary tract smooth muscle contraction property_value: RO:0002161 NCBITaxon:8782 [Term] id: GO:0014848 name: urinary tract smooth muscle contraction is_a: GO:0006939 ! smooth muscle contraction [Term] id: GO:0015031 name: protein transport is_a: GO:0045184 ! establishment of protein localization is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport [Term] id: GO:0015629 name: actin cytoskeleton is_a: GO:0005856 ! cytoskeleton [Term] id: GO:0015695 name: organic cation transport is_a: GO:0071702 ! organic substance transport [Term] id: GO:0015711 name: organic anion transport is_a: GO:0071702 ! organic substance transport [Term] id: GO:0015718 name: monocarboxylic acid transport is_a: GO:0046942 ! carboxylic acid transport [Term] id: GO:0015721 name: bile acid and bile salt transport is_a: GO:0006869 ! lipid transport is_a: GO:0015718 ! monocarboxylic acid transport is_a: GO:0015850 ! organic hydroxy compound transport [Term] id: GO:0015833 name: peptide transport is_a: GO:0042886 ! amide transport is_a: GO:0071702 ! organic substance transport [Term] id: GO:0015837 name: amine transport is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport [Term] id: GO:0015844 name: monoamine transport is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport [Term] id: GO:0015849 name: organic acid transport is_a: GO:0071702 ! organic substance transport [Term] id: GO:0015850 name: organic hydroxy compound transport is_a: GO:0071702 ! organic substance transport [Term] id: GO:0015874 name: norepinephrine transport is_a: GO:0015695 ! organic cation transport is_a: GO:0051937 ! catecholamine transport [Term] id: GO:0015980 name: energy derivation by oxidation of organic compounds is_a: GO:0006091 ! generation of precursor metabolites and energy [Term] id: GO:0016020 name: membrane is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0016043 name: cellular component organization is_a: GO:0071840 ! cellular component organization or biogenesis [Term] id: GO:0016048 name: detection of temperature stimulus is_a: GO:0009266 ! response to temperature stimulus is_a: GO:0009581 ! detection of external stimulus is_a: GO:0009582 ! detection of abiotic stimulus [Term] id: GO:0016051 name: carbohydrate biosynthetic process is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:1901576 ! organic substance biosynthetic process [Term] id: GO:0016052 name: carbohydrate catabolic process is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:1901575 ! organic substance catabolic process [Term] id: GO:0016053 name: organic acid biosynthetic process is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0044249 ! cellular biosynthetic process is_a: GO:0044283 ! small molecule biosynthetic process is_a: GO:1901576 ! organic substance biosynthetic process [Term] id: GO:0016301 name: kinase activity comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups [Term] id: GO:0016310 name: phosphorylation is_a: GO:0006796 ! phosphate-containing compound metabolic process [Term] id: GO:0016331 name: morphogenesis of embryonic epithelium is_a: GO:0002009 ! morphogenesis of an epithelium is_a: GO:0048598 ! embryonic morphogenesis [Term] id: GO:0016477 name: cell migration is_a: GO:0048870 ! cell motility property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/24787" xsd:anyURI [Term] id: GO:0016740 name: transferase activity is_a: GO:0003824 ! catalytic activity [Term] id: GO:0016772 name: transferase activity, transferring phosphorus-containing groups comment: Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. is_a: GO:0016740 ! transferase activity [Term] id: GO:0019098 name: reproductive behavior is_a: GO:0007610 ! behavior is_a: GO:0022414 ! reproductive process intersection_of: GO:0007610 ! behavior intersection_of: BFO:0000050 GO:0032504 ! part of multicellular organism reproduction relationship: BFO:0000050 GO:0032504 ! part of multicellular organism reproduction property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/23491" xsd:anyURI [Term] id: GO:0019216 name: regulation of lipid metabolic process is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006629 ! regulates lipid metabolic process relationship: RO:0002211 GO:0006629 ! regulates lipid metabolic process [Term] id: GO:0019218 name: regulation of steroid metabolic process is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0008202 ! regulates steroid metabolic process relationship: RO:0002211 GO:0008202 ! regulates steroid metabolic process [Term] id: GO:0019220 name: regulation of phosphate metabolic process is_a: GO:0051174 ! regulation of phosphorus metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006796 ! regulates phosphate-containing compound metabolic process relationship: RO:0002211 GO:0006796 ! regulates phosphate-containing compound metabolic process [Term] id: GO:0019222 name: regulation of metabolic process is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0008152 ! regulates metabolic process relationship: RO:0002211 GO:0008152 ! regulates metabolic process [Term] id: GO:0019233 name: sensory perception of pain is_a: GO:0007600 ! sensory perception [Term] id: GO:0019318 name: hexose metabolic process is_a: GO:0005996 ! monosaccharide metabolic process [Term] id: GO:0019752 name: carboxylic acid metabolic process is_a: GO:0043436 ! oxoacid metabolic process [Term] id: GO:0019953 name: sexual reproduction comment: Note that gametes may come from two organisms or from a single organism in the case of self-fertilizing hermaphrodites, e.g. C. elegans, or self-fertilization in plants. Note also that sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times. is_a: GO:0000003 ! reproduction property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22929" xsd:anyURI [Term] id: GO:0021915 name: neural tube development is_a: GO:0035295 ! tube development is_a: GO:0060429 ! epithelium development relationship: BFO:0000050 GO:0007399 ! part of nervous system development relationship: BFO:0000050 GO:0043009 ! part of chordate embryonic development [Term] id: GO:0022410 name: circadian sleep/wake cycle process is_a: GO:0048512 ! circadian behavior relationship: BFO:0000050 GO:0042745 ! part of circadian sleep/wake cycle [Term] id: GO:0022412 name: cellular process involved in reproduction in multicellular organism is_a: GO:0009987 ! cellular process is_a: GO:0022414 ! reproductive process intersection_of: GO:0009987 ! cellular process intersection_of: BFO:0000050 GO:0032504 ! part of multicellular organism reproduction relationship: BFO:0000050 GO:0032504 ! part of multicellular organism reproduction [Term] id: GO:0022414 name: reproductive process is_a: GO:0008150 ! biological_process intersection_of: GO:0008150 ! biological_process intersection_of: BFO:0000050 GO:0000003 ! part of reproduction relationship: BFO:0000050 GO:0000003 ! part of reproduction [Term] id: GO:0022600 name: digestive system process is_a: GO:0003008 ! system process intersection_of: GO:0003008 ! system process intersection_of: BFO:0000050 GO:0007586 ! part of digestion relationship: BFO:0000050 GO:0007586 ! part of digestion [Term] id: GO:0022603 name: regulation of anatomical structure morphogenesis is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009653 ! regulates anatomical structure morphogenesis relationship: RO:0002211 GO:0009653 ! regulates anatomical structure morphogenesis [Term] id: GO:0023051 name: regulation of signaling is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0023052 ! regulates signaling relationship: RO:0002211 GO:0023052 ! regulates signaling [Term] id: GO:0023052 name: signaling comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. is_a: GO:0050789 ! regulation of biological process [Term] id: GO:0023056 name: positive regulation of signaling is_a: GO:0023051 ! regulation of signaling is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0023052 ! positively regulates signaling relationship: RO:0002213 GO:0023052 ! positively regulates signaling [Term] id: GO:0023057 name: negative regulation of signaling is_a: GO:0023051 ! regulation of signaling is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0023052 ! negatively regulates signaling relationship: RO:0002212 GO:0023052 ! negatively regulates signaling [Term] id: GO:0023061 name: signal release is_a: GO:0032940 ! secretion by cell intersection_of: GO:0032940 ! secretion by cell intersection_of: BFO:0000050 GO:0007267 ! part of cell-cell signaling relationship: BFO:0000050 GO:0007267 ! part of cell-cell signaling [Term] id: GO:0030054 name: cell junction is_a: GO:0110165 ! cellular anatomical entity property_value: RO:0002161 NCBITaxon:4751 [Term] id: GO:0030072 name: peptide hormone secretion is_a: GO:0002790 ! peptide secretion is_a: GO:0046879 ! hormone secretion [Term] id: GO:0030073 name: insulin secretion is_a: GO:0009306 ! protein secretion is_a: GO:0030072 ! peptide hormone secretion property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/11255#issuecomment-426191045" xsd:anyURI [Term] id: GO:0030278 name: regulation of ossification is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0001503 ! regulates ossification relationship: RO:0002211 GO:0001503 ! regulates ossification [Term] id: GO:0030279 name: negative regulation of ossification is_a: GO:0030278 ! regulation of ossification is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0001503 ! negatively regulates ossification relationship: RO:0002212 GO:0001503 ! negatively regulates ossification [Term] id: GO:0030312 name: external encapsulating structure comment: The outer membrane (of gram negative bacteria) or cell wall (of yeast or Gram positive bacteria) are defined as parts of this structure, see 'external encapsulating structure part'. is_a: GO:0110165 ! cellular anatomical entity relationship: BFO:0000050 GO:0071944 ! part of cell periphery [Term] id: GO:0030334 name: regulation of cell migration is_a: GO:2000145 ! regulation of cell motility intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0016477 ! regulates cell migration relationship: RO:0002211 GO:0016477 ! regulates cell migration [Term] id: GO:0030335 name: positive regulation of cell migration is_a: GO:0030334 ! regulation of cell migration is_a: GO:2000147 ! positive regulation of cell motility intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0016477 ! positively regulates cell migration relationship: RO:0002213 GO:0016477 ! positively regulates cell migration [Term] id: GO:0030336 name: negative regulation of cell migration is_a: GO:0030334 ! regulation of cell migration is_a: GO:2000146 ! negative regulation of cell motility intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0016477 ! negatively regulates cell migration relationship: RO:0002212 GO:0016477 ! negatively regulates cell migration [Term] id: GO:0030421 name: defecation is_a: GO:0007588 ! excretion is_a: GO:0022600 ! digestive system process [Term] id: GO:0030431 name: sleep is_a: GO:0032501 ! multicellular organismal process [Term] id: GO:0030432 name: peristalsis is_a: GO:0014821 ! phasic smooth muscle contraction [Term] id: GO:0030534 name: adult behavior comment: See also the biological process term 'behavior ; GO:0007610'. is_a: GO:0007610 ! behavior [Term] id: GO:0030659 name: cytoplasmic vesicle membrane is_a: GO:0012506 ! vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: BFO:0000050 GO:0031410 ! part of cytoplasmic vesicle relationship: BFO:0000050 GO:0031410 ! part of cytoplasmic vesicle [Term] id: GO:0030936 name: transmembrane collagen trimer is_a: GO:0005581 ! collagen trimer is_a: GO:0098797 ! plasma membrane protein complex intersection_of: GO:0005581 ! collagen trimer intersection_of: BFO:0000050 GO:0005886 ! part of plasma membrane [Term] id: GO:0031012 name: extracellular matrix is_a: GO:0030312 ! external encapsulating structure [Term] id: GO:0031090 name: organelle membrane is_a: GO:0016020 ! membrane intersection_of: GO:0016020 ! membrane intersection_of: BFO:0000050 GO:0043227 ! part of membrane-bounded organelle relationship: BFO:0000050 GO:0043227 ! part of membrane-bounded organelle [Term] id: GO:0031223 name: auditory behavior is_a: GO:0007638 ! mechanosensory behavior relationship: BFO:0000050 GO:0010996 ! part of response to auditory stimulus [Term] id: GO:0031323 name: regulation of cellular metabolic process is_a: GO:0019222 ! regulation of metabolic process is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0044237 ! regulates cellular metabolic process relationship: RO:0002211 GO:0044237 ! regulates cellular metabolic process [Term] id: GO:0031324 name: negative regulation of cellular metabolic process is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0044237 ! negatively regulates cellular metabolic process relationship: RO:0002212 GO:0044237 ! negatively regulates cellular metabolic process [Term] id: GO:0031325 name: positive regulation of cellular metabolic process is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0044237 ! positively regulates cellular metabolic process relationship: RO:0002213 GO:0044237 ! positively regulates cellular metabolic process [Term] id: GO:0031326 name: regulation of cellular biosynthetic process is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0031323 ! regulation of cellular metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0044249 ! regulates cellular biosynthetic process relationship: RO:0002211 GO:0044249 ! regulates cellular biosynthetic process [Term] id: GO:0031327 name: negative regulation of cellular biosynthetic process is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0031326 ! regulation of cellular biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0044249 ! negatively regulates cellular biosynthetic process relationship: RO:0002212 GO:0044249 ! negatively regulates cellular biosynthetic process [Term] id: GO:0031328 name: positive regulation of cellular biosynthetic process is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0031326 ! regulation of cellular biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0044249 ! positively regulates cellular biosynthetic process relationship: RO:0002213 GO:0044249 ! positively regulates cellular biosynthetic process [Term] id: GO:0031329 name: regulation of cellular catabolic process is_a: GO:0009894 ! regulation of catabolic process is_a: GO:0031323 ! regulation of cellular metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0044248 ! regulates cellular catabolic process relationship: RO:0002211 GO:0044248 ! regulates cellular catabolic process [Term] id: GO:0031330 name: negative regulation of cellular catabolic process is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0031329 ! regulation of cellular catabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0044248 ! negatively regulates cellular catabolic process relationship: RO:0002212 GO:0044248 ! negatively regulates cellular catabolic process [Term] id: GO:0031331 name: positive regulation of cellular catabolic process is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0031329 ! regulation of cellular catabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0044248 ! positively regulates cellular catabolic process relationship: RO:0002213 GO:0044248 ! positively regulates cellular catabolic process [Term] id: GO:0031410 name: cytoplasmic vesicle is_a: GO:0097708 ! intracellular vesicle intersection_of: GO:0031982 ! vesicle intersection_of: BFO:0000050 GO:0005737 ! part of cytoplasm relationship: BFO:0000050 GO:0005737 ! part of cytoplasm [Term] id: GO:0031644 name: regulation of nervous system process is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0050877 ! regulates nervous system process relationship: RO:0002211 GO:0050877 ! regulates nervous system process [Term] id: GO:0031645 name: negative regulation of nervous system process is_a: GO:0031644 ! regulation of nervous system process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0050877 ! negatively regulates nervous system process relationship: RO:0002212 GO:0050877 ! negatively regulates nervous system process [Term] id: GO:0031646 name: positive regulation of nervous system process is_a: GO:0031644 ! regulation of nervous system process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0050877 ! positively regulates nervous system process relationship: RO:0002213 GO:0050877 ! positively regulates nervous system process [Term] id: GO:0031982 name: vesicle is_a: GO:0043227 ! membrane-bounded organelle [Term] id: GO:0031987 name: locomotion involved in locomotory behavior is_a: GO:0040011 ! locomotion intersection_of: GO:0040011 ! locomotion intersection_of: BFO:0000050 GO:0007626 ! part of locomotory behavior relationship: BFO:0000050 GO:0007626 ! part of locomotory behavior [Term] id: GO:0032024 name: positive regulation of insulin secretion is_a: GO:0050714 ! positive regulation of protein secretion is_a: GO:0050796 ! regulation of insulin secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0030073 ! positively regulates insulin secretion relationship: RO:0002213 GO:0030073 ! positively regulates insulin secretion [Term] id: GO:0032101 name: regulation of response to external stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009605 ! regulates response to external stimulus relationship: RO:0002211 GO:0009605 ! regulates response to external stimulus [Term] id: GO:0032102 name: negative regulation of response to external stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0048585 ! negative regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0009605 ! negatively regulates response to external stimulus relationship: RO:0002212 GO:0009605 ! negatively regulates response to external stimulus [Term] id: GO:0032103 name: positive regulation of response to external stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0048584 ! positive regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009605 ! positively regulates response to external stimulus relationship: RO:0002213 GO:0009605 ! positively regulates response to external stimulus [Term] id: GO:0032368 name: regulation of lipid transport is_a: GO:0051049 ! regulation of transport is_a: GO:1905952 ! regulation of lipid localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006869 ! regulates lipid transport relationship: RO:0002211 GO:0006869 ! regulates lipid transport [Term] id: GO:0032369 name: negative regulation of lipid transport is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0051051 ! negative regulation of transport is_a: GO:1905953 ! negative regulation of lipid localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006869 ! negatively regulates lipid transport relationship: RO:0002212 GO:0006869 ! negatively regulates lipid transport [Term] id: GO:0032370 name: positive regulation of lipid transport is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0051050 ! positive regulation of transport is_a: GO:1905954 ! positive regulation of lipid localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006869 ! positively regulates lipid transport relationship: RO:0002213 GO:0006869 ! positively regulates lipid transport [Term] id: GO:0032386 name: regulation of intracellular transport is_a: GO:0051049 ! regulation of transport is_a: GO:0060341 ! regulation of cellular localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0046907 ! regulates intracellular transport relationship: RO:0002211 GO:0046907 ! regulates intracellular transport [Term] id: GO:0032387 name: negative regulation of intracellular transport is_a: GO:0032386 ! regulation of intracellular transport is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0046907 ! negatively regulates intracellular transport relationship: RO:0002212 GO:0046907 ! negatively regulates intracellular transport [Term] id: GO:0032388 name: positive regulation of intracellular transport is_a: GO:0032386 ! regulation of intracellular transport is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0046907 ! positively regulates intracellular transport relationship: RO:0002213 GO:0046907 ! positively regulates intracellular transport [Term] id: GO:0032432 name: actin filament bundle is_a: GO:0110165 ! cellular anatomical entity relationship: BFO:0000050 GO:0015629 ! part of actin cytoskeleton relationship: BFO:0000051 GO:0005884 ! has part actin filament [Term] id: GO:0032501 name: multicellular organismal process is_a: GO:0008150 ! biological_process property_value: RO:0002161 NCBITaxon:2 property_value: RO:0002161 NCBITaxon:2157 property_value: RO:0002161 NCBITaxon:4896 property_value: RO:0002161 NCBITaxon:4932 [Term] id: GO:0032502 name: developmental process is_a: GO:0008150 ! biological_process [Term] id: GO:0032504 name: multicellular organism reproduction is_a: GO:0000003 ! reproduction is_a: GO:0032501 ! multicellular organismal process [Term] id: GO:0032594 name: protein transport within lipid bilayer is_a: GO:0006886 ! intracellular protein transport is_a: GO:0061024 ! membrane organization intersection_of: GO:0015031 ! protein transport intersection_of: BFO:0000066 GO:0016020 ! occurs in membrane relationship: BFO:0000066 GO:0016020 ! occurs in membrane [Term] id: GO:0032787 name: monocarboxylic acid metabolic process is_a: GO:0019752 ! carboxylic acid metabolic process [Term] id: GO:0032838 name: plasma membrane bounded cell projection cytoplasm is_a: GO:0099568 ! cytoplasmic region intersection_of: GO:0005737 ! cytoplasm intersection_of: BFO:0000050 GO:0120025 ! part of plasma membrane bounded cell projection relationship: BFO:0000050 GO:0120025 ! part of plasma membrane bounded cell projection [Term] id: GO:0032879 name: regulation of localization is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0051179 ! regulates localization relationship: RO:0002211 GO:0051179 ! regulates localization [Term] id: GO:0032880 name: regulation of protein localization is_a: GO:0060341 ! regulation of cellular localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0008104 ! regulates protein localization relationship: RO:0002211 GO:0008104 ! regulates protein localization property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22021" xsd:anyURI [Term] id: GO:0032881 name: regulation of polysaccharide metabolic process is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0005976 ! regulates polysaccharide metabolic process relationship: RO:0002211 GO:0005976 ! regulates polysaccharide metabolic process [Term] id: GO:0032885 name: regulation of polysaccharide biosynthetic process is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:0032881 ! regulation of polysaccharide metabolic process is_a: GO:0043255 ! regulation of carbohydrate biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0000271 ! regulates polysaccharide biosynthetic process relationship: RO:0002211 GO:0000271 ! regulates polysaccharide biosynthetic process [Term] id: GO:0032890 name: regulation of organic acid transport is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0015849 ! regulates organic acid transport relationship: RO:0002211 GO:0015849 ! regulates organic acid transport [Term] id: GO:0032891 name: negative regulation of organic acid transport is_a: GO:0032890 ! regulation of organic acid transport is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0015849 ! negatively regulates organic acid transport relationship: RO:0002212 GO:0015849 ! negatively regulates organic acid transport [Term] id: GO:0032892 name: positive regulation of organic acid transport is_a: GO:0032890 ! regulation of organic acid transport is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0015849 ! positively regulates organic acid transport relationship: RO:0002213 GO:0015849 ! positively regulates organic acid transport [Term] id: GO:0032940 name: secretion by cell is_a: GO:0046903 ! secretion is_a: GO:0140352 ! export from cell [Term] id: GO:0032941 name: secretion by tissue is_a: GO:0032501 ! multicellular organismal process is_a: GO:0046903 ! secretion [Term] id: GO:0032991 name: protein-containing complex name: protein-containing macromolecular complex comment: A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. comment: This is not covalently bonded, which conflicts with changes to the parent definition. is_a: COB:0000080 ! complex of molecular entities is_a: GO:0005575 ! cellular_component relationship: BFO:0000051 COB:0000073 ! has part gene product [Term] id: GO:0033036 name: macromolecule localization is_a: GO:0051179 ! localization [Term] id: GO:0033157 name: regulation of intracellular protein transport is_a: GO:0032386 ! regulation of intracellular transport is_a: GO:0051223 ! regulation of protein transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006886 ! regulates intracellular protein transport relationship: RO:0002211 GO:0006886 ! regulates intracellular protein transport [Term] id: GO:0033604 name: negative regulation of catecholamine secretion is_a: GO:0050433 ! regulation of catecholamine secretion is_a: GO:0051953 ! negative regulation of amine transport is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0050432 ! negatively regulates catecholamine secretion relationship: RO:0002212 GO:0050432 ! negatively regulates catecholamine secretion [Term] id: GO:0033605 name: positive regulation of catecholamine secretion is_a: GO:0050433 ! regulation of catecholamine secretion is_a: GO:0051954 ! positive regulation of amine transport is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0050432 ! positively regulates catecholamine secretion relationship: RO:0002213 GO:0050432 ! positively regulates catecholamine secretion [Term] id: GO:0033673 name: negative regulation of kinase activity is_a: GO:0042326 ! negative regulation of phosphorylation is_a: GO:0043549 ! regulation of kinase activity is_a: GO:0051348 ! negative regulation of transferase activity intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0016301 ! negatively regulates kinase activity relationship: RO:0002212 GO:0016301 ! negatively regulates kinase activity [Term] id: GO:0033674 name: positive regulation of kinase activity is_a: GO:0042327 ! positive regulation of phosphorylation is_a: GO:0043549 ! regulation of kinase activity is_a: GO:0051347 ! positive regulation of transferase activity intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0016301 ! positively regulates kinase activity relationship: RO:0002213 GO:0016301 ! positively regulates kinase activity [Term] id: GO:0035148 name: tube formation is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis relationship: BFO:0000050 GO:0035239 ! part of tube morphogenesis [Term] id: GO:0035176 name: social behavior comment: Behavior such as predation which involves members of different species is not social. Communication between members of different species is also not social behavior. is_a: GO:0007610 ! behavior is_a: GO:0051703 ! biological process involved in intraspecies interaction between organisms [Term] id: GO:0035239 name: tube morphogenesis is_a: GO:0009653 ! anatomical structure morphogenesis relationship: BFO:0000050 GO:0035295 ! part of tube development [Term] id: GO:0035295 name: tube development is_a: GO:0048856 ! anatomical structure development relationship: BFO:0000050 GO:0007275 ! part of multicellular organism development [Term] id: GO:0035592 name: establishment of protein localization to extracellular region is_a: GO:0045184 ! establishment of protein localization is_a: GO:0071692 ! protein localization to extracellular region [Term] id: GO:0035809 name: regulation of urine volume is_a: GO:0003014 ! renal system process is_a: GO:0050878 ! regulation of body fluid levels [Term] id: GO:0036072 name: direct ossification is_a: GO:0001503 ! ossification [Term] id: GO:0036477 name: somatodendritic compartment is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0040011 name: locomotion is_a: GO:0008150 ! biological_process property_value: RO:0002161 NCBITaxon:451864 [Term] id: GO:0040012 name: regulation of locomotion is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0040011 ! regulates locomotion relationship: RO:0002211 GO:0040011 ! regulates locomotion [Term] id: GO:0040013 name: negative regulation of locomotion is_a: GO:0040012 ! regulation of locomotion is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0040011 ! negatively regulates locomotion relationship: RO:0002212 GO:0040011 ! negatively regulates locomotion [Term] id: GO:0040016 name: embryonic cleavage is_a: GO:0051301 ! cell division relationship: BFO:0000050 GO:0009790 ! part of embryo development [Term] id: GO:0040017 name: positive regulation of locomotion is_a: GO:0040012 ! regulation of locomotion is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0040011 ! positively regulates locomotion relationship: RO:0002213 GO:0040011 ! positively regulates locomotion [Term] id: GO:0040019 name: positive regulation of embryonic development is_a: GO:0045995 ! regulation of embryonic development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009790 ! positively regulates embryo development relationship: RO:0002213 GO:0009790 ! positively regulates embryo development [Term] id: GO:0042074 name: cell migration involved in gastrulation is_a: GO:0001667 ! ameboidal-type cell migration intersection_of: GO:0016477 ! cell migration intersection_of: BFO:0000050 GO:0007369 ! part of gastrulation relationship: BFO:0000050 GO:0007369 ! part of gastrulation [Term] id: GO:0042127 name: regulation of cell population proliferation is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0008283 ! regulates cell population proliferation relationship: RO:0002211 GO:0008283 ! regulates cell population proliferation property_value: RO:0002161 NCBITaxon:4751 [Term] id: GO:0042180 name: cellular ketone metabolic process is_a: GO:0044237 ! cellular metabolic process is_a: GO:0044281 ! small molecule metabolic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:0042221 name: response to chemical comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0050896 ! response to stimulus [Term] id: GO:0042320 name: regulation of circadian sleep/wake cycle, REM sleep is_a: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0042747 ! regulates circadian sleep/wake cycle, REM sleep relationship: RO:0002211 GO:0042747 ! regulates circadian sleep/wake cycle, REM sleep [Term] id: GO:0042321 name: negative regulation of circadian sleep/wake cycle, sleep is_a: GO:0042754 ! negative regulation of circadian rhythm is_a: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep is_a: GO:0048521 ! negative regulation of behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0050802 ! negatively regulates circadian sleep/wake cycle, sleep relationship: RO:0002212 GO:0050802 ! negatively regulates circadian sleep/wake cycle, sleep [Term] id: GO:0042322 name: negative regulation of circadian sleep/wake cycle, REM sleep is_a: GO:0042320 ! regulation of circadian sleep/wake cycle, REM sleep is_a: GO:0042321 ! negative regulation of circadian sleep/wake cycle, sleep intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0042747 ! negatively regulates circadian sleep/wake cycle, REM sleep relationship: RO:0002212 GO:0042747 ! negatively regulates circadian sleep/wake cycle, REM sleep [Term] id: GO:0042323 name: negative regulation of circadian sleep/wake cycle, non-REM sleep is_a: GO:0042321 ! negative regulation of circadian sleep/wake cycle, sleep is_a: GO:0045188 ! regulation of circadian sleep/wake cycle, non-REM sleep intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0042748 ! negatively regulates circadian sleep/wake cycle, non-REM sleep relationship: RO:0002212 GO:0042748 ! negatively regulates circadian sleep/wake cycle, non-REM sleep [Term] id: GO:0042325 name: regulation of phosphorylation is_a: GO:0019220 ! regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0016310 ! regulates phosphorylation relationship: RO:0002211 GO:0016310 ! regulates phosphorylation [Term] id: GO:0042326 name: negative regulation of phosphorylation is_a: GO:0042325 ! regulation of phosphorylation is_a: GO:0045936 ! negative regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0016310 ! negatively regulates phosphorylation relationship: RO:0002212 GO:0016310 ! negatively regulates phosphorylation [Term] id: GO:0042327 name: positive regulation of phosphorylation is_a: GO:0042325 ! regulation of phosphorylation is_a: GO:0045937 ! positive regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0016310 ! positively regulates phosphorylation relationship: RO:0002213 GO:0016310 ! positively regulates phosphorylation [Term] id: GO:0042592 name: homeostatic process is_a: GO:0008150 ! biological_process [Term] id: GO:0042745 name: circadian sleep/wake cycle is_a: GO:0048512 ! circadian behavior [Term] id: GO:0042747 name: circadian sleep/wake cycle, REM sleep is_a: GO:0022410 ! circadian sleep/wake cycle process relationship: BFO:0000050 GO:0050802 ! part of circadian sleep/wake cycle, sleep [Term] id: GO:0042748 name: circadian sleep/wake cycle, non-REM sleep is_a: GO:0022410 ! circadian sleep/wake cycle process relationship: BFO:0000050 GO:0050802 ! part of circadian sleep/wake cycle, sleep [Term] id: GO:0042749 name: regulation of circadian sleep/wake cycle is_a: GO:0042752 ! regulation of circadian rhythm is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0042745 ! regulates circadian sleep/wake cycle relationship: RO:0002211 GO:0042745 ! regulates circadian sleep/wake cycle [Term] id: GO:0042752 name: regulation of circadian rhythm is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007623 ! regulates circadian rhythm relationship: RO:0002211 GO:0007623 ! regulates circadian rhythm [Term] id: GO:0042753 name: positive regulation of circadian rhythm is_a: GO:0042752 ! regulation of circadian rhythm is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007623 ! positively regulates circadian rhythm relationship: RO:0002213 GO:0007623 ! positively regulates circadian rhythm [Term] id: GO:0042754 name: negative regulation of circadian rhythm is_a: GO:0042752 ! regulation of circadian rhythm is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007623 ! negatively regulates circadian rhythm relationship: RO:0002212 GO:0007623 ! negatively regulates circadian rhythm [Term] id: GO:0042755 name: eating behavior is_a: GO:0007631 ! feeding behavior [Term] id: GO:0042756 name: drinking behavior is_a: GO:0007631 ! feeding behavior [Term] id: GO:0042886 name: amide transport is_a: GO:0071705 ! nitrogen compound transport [Term] id: GO:0042995 name: cell projection is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0043005 name: neuron projection is_a: GO:0120025 ! plasma membrane bounded cell projection property_value: RO:0002161 NCBITaxon:4751 [Term] id: GO:0043009 name: chordate embryonic development is_a: GO:0009792 ! embryo development ending in birth or egg hatching [Term] id: GO:0043025 name: neuronal cell body comment: Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections. is_a: GO:0044297 ! cell body relationship: BFO:0000050 GO:0036477 ! part of somatodendritic compartment [Term] id: GO:0043085 name: positive regulation of catalytic activity is_a: GO:0044093 ! positive regulation of molecular function is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0003824 ! positively regulates catalytic activity relationship: RO:0002213 GO:0003824 ! positively regulates catalytic activity [Term] id: GO:0043086 name: negative regulation of catalytic activity is_a: GO:0044092 ! negative regulation of molecular function is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0003824 ! negatively regulates catalytic activity relationship: RO:0002212 GO:0003824 ! negatively regulates catalytic activity [Term] id: GO:0043170 name: macromolecule metabolic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:0043226 name: organelle is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0043227 name: membrane-bounded organelle is_a: GO:0043226 ! organelle intersection_of: GO:0043226 ! organelle intersection_of: BFO:0000051 GO:0016020 ! has part membrane relationship: BFO:0000051 GO:0016020 ! has part membrane [Term] id: GO:0043228 name: non-membrane-bounded organelle is_a: GO:0043226 ! organelle property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/21881" xsd:anyURI [Term] id: GO:0043229 name: intracellular organelle is_a: GO:0043226 ! organelle intersection_of: GO:0043226 ! organelle intersection_of: BFO:0000050 GO:0005622 ! part of intracellular anatomical structure relationship: BFO:0000050 GO:0005622 ! part of intracellular anatomical structure [Term] id: GO:0043230 name: extracellular organelle is_a: GO:0043226 ! organelle intersection_of: GO:0043226 ! organelle intersection_of: BFO:0000050 GO:0005576 ! part of extracellular region relationship: BFO:0000050 GO:0005576 ! part of extracellular region [Term] id: GO:0043231 name: intracellular membrane-bounded organelle is_a: GO:0043227 ! membrane-bounded organelle is_a: GO:0043229 ! intracellular organelle intersection_of: GO:0043227 ! membrane-bounded organelle intersection_of: BFO:0000050 GO:0005622 ! part of intracellular anatomical structure [Term] id: GO:0043232 name: intracellular non-membrane-bounded organelle is_a: GO:0043228 ! non-membrane-bounded organelle is_a: GO:0043229 ! intracellular organelle intersection_of: GO:0043228 ! non-membrane-bounded organelle intersection_of: BFO:0000050 GO:0005622 ! part of intracellular anatomical structure [Term] id: GO:0043255 name: regulation of carbohydrate biosynthetic process is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0009889 ! regulation of biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0016051 ! regulates carbohydrate biosynthetic process relationship: RO:0002211 GO:0016051 ! regulates carbohydrate biosynthetic process [Term] id: GO:0043264 name: extracellular non-membrane-bounded organelle is_a: GO:0043228 ! non-membrane-bounded organelle is_a: GO:0043230 ! extracellular organelle intersection_of: GO:0043228 ! non-membrane-bounded organelle intersection_of: BFO:0000050 GO:0005576 ! part of extracellular region [Term] id: GO:0043269 name: regulation of monoatomic ion transport is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006811 ! regulates monoatomic ion transport relationship: RO:0002211 GO:0006811 ! regulates monoatomic ion transport [Term] id: GO:0043270 name: positive regulation of monoatomic ion transport is_a: GO:0043269 ! regulation of monoatomic ion transport is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006811 ! positively regulates monoatomic ion transport relationship: RO:0002213 GO:0006811 ! positively regulates monoatomic ion transport [Term] id: GO:0043271 name: negative regulation of monoatomic ion transport is_a: GO:0043269 ! regulation of monoatomic ion transport is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006811 ! negatively regulates monoatomic ion transport relationship: RO:0002212 GO:0006811 ! negatively regulates monoatomic ion transport [Term] id: GO:0043436 name: oxoacid metabolic process is_a: GO:0006082 ! organic acid metabolic process [Term] id: GO:0043467 name: regulation of generation of precursor metabolites and energy is_a: GO:0031323 ! regulation of cellular metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006091 ! regulates generation of precursor metabolites and energy relationship: RO:0002211 GO:0006091 ! regulates generation of precursor metabolites and energy [Term] id: GO:0043470 name: regulation of carbohydrate catabolic process is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0009894 ! regulation of catabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0016052 ! regulates carbohydrate catabolic process relationship: RO:0002211 GO:0016052 ! regulates carbohydrate catabolic process [Term] id: GO:0043549 name: regulation of kinase activity is_a: GO:0042325 ! regulation of phosphorylation is_a: GO:0051338 ! regulation of transferase activity intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0016301 ! regulates kinase activity relationship: RO:0002211 GO:0016301 ! regulates kinase activity [Term] id: GO:0043576 name: regulation of respiratory gaseous exchange is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007585 ! regulates respiratory gaseous exchange by respiratory system relationship: RO:0002211 GO:0007585 ! regulates respiratory gaseous exchange by respiratory system [Term] id: GO:0044042 name: glucan metabolic process is_a: GO:0005976 ! polysaccharide metabolic process [Term] id: GO:0044057 name: regulation of system process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0003008 ! regulates system process relationship: RO:0002211 GO:0003008 ! regulates system process [Term] id: GO:0044058 name: regulation of digestive system process is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0022600 ! regulates digestive system process relationship: RO:0002211 GO:0022600 ! regulates digestive system process [Term] id: GO:0044060 name: regulation of endocrine process is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0050886 ! regulates endocrine process relationship: RO:0002211 GO:0050886 ! regulates endocrine process [Term] id: GO:0044062 name: regulation of excretion is_a: GO:0044057 ! regulation of system process is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007588 ! regulates excretion relationship: RO:0002211 GO:0007588 ! regulates excretion [Term] id: GO:0044065 name: regulation of respiratory system process is_a: GO:0043576 ! regulation of respiratory gaseous exchange is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0003016 ! regulates respiratory system process relationship: RO:0002211 GO:0003016 ! regulates respiratory system process [Term] id: GO:0044092 name: negative regulation of molecular function is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0003674 ! negatively regulates molecular_function relationship: RO:0002212 GO:0003674 ! negatively regulates molecular_function [Term] id: GO:0044093 name: positive regulation of molecular function is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0003674 ! positively regulates molecular_function relationship: RO:0002213 GO:0003674 ! positively regulates molecular_function [Term] id: GO:0044237 name: cellular metabolic process comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term. is_a: GO:0008152 ! metabolic process is_a: GO:0009987 ! cellular process [Term] id: GO:0044238 name: primary metabolic process is_a: GO:0008152 ! metabolic process [Term] id: GO:0044248 name: cellular catabolic process is_a: GO:0009056 ! catabolic process is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0044249 name: cellular biosynthetic process is_a: GO:0009058 ! biosynthetic process is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0044281 name: small molecule metabolic process comment: Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides. is_a: GO:0008152 ! metabolic process [Term] id: GO:0044283 name: small molecule biosynthetic process comment: Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides. is_a: GO:0009058 ! biosynthetic process is_a: GO:0044281 ! small molecule metabolic process [Term] id: GO:0044297 name: cell body comment: Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections. is_a: GO:0110165 ! cellular anatomical entity property_value: RO:0002161 NCBITaxon:4890 [Term] id: GO:0045184 name: establishment of protein localization is_a: GO:0008104 ! protein localization is_a: GO:0051234 ! establishment of localization [Term] id: GO:0045187 name: regulation of circadian sleep/wake cycle, sleep is_a: GO:0042749 ! regulation of circadian sleep/wake cycle intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0050802 ! regulates circadian sleep/wake cycle, sleep relationship: RO:0002211 GO:0050802 ! regulates circadian sleep/wake cycle, sleep [Term] id: GO:0045188 name: regulation of circadian sleep/wake cycle, non-REM sleep is_a: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0042748 ! regulates circadian sleep/wake cycle, non-REM sleep relationship: RO:0002211 GO:0042748 ! regulates circadian sleep/wake cycle, non-REM sleep [Term] id: GO:0045297 name: obsolete post-mating behavior comment: This term was obsoleted because it was not precisely defined. is_obsolete: true [Term] id: GO:0045719 name: negative regulation of glycogen biosynthetic process is_a: GO:0005979 ! regulation of glycogen biosynthetic process is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process is_a: GO:0070874 ! negative regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0005978 ! negatively regulates glycogen biosynthetic process relationship: RO:0002212 GO:0005978 ! negatively regulates glycogen biosynthetic process [Term] id: GO:0045725 name: positive regulation of glycogen biosynthetic process is_a: GO:0005979 ! regulation of glycogen biosynthetic process is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process is_a: GO:0031328 ! positive regulation of cellular biosynthetic process is_a: GO:0070875 ! positive regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0005978 ! positively regulates glycogen biosynthetic process relationship: RO:0002213 GO:0005978 ! positively regulates glycogen biosynthetic process [Term] id: GO:0045778 name: positive regulation of ossification is_a: GO:0030278 ! regulation of ossification is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0001503 ! positively regulates ossification relationship: RO:0002213 GO:0001503 ! positively regulates ossification [Term] id: GO:0045818 name: negative regulation of glycogen catabolic process is_a: GO:0005981 ! regulation of glycogen catabolic process is_a: GO:0031330 ! negative regulation of cellular catabolic process is_a: GO:0070874 ! negative regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0005980 ! negatively regulates glycogen catabolic process relationship: RO:0002212 GO:0005980 ! negatively regulates glycogen catabolic process [Term] id: GO:0045819 name: positive regulation of glycogen catabolic process is_a: GO:0005981 ! regulation of glycogen catabolic process is_a: GO:0031331 ! positive regulation of cellular catabolic process is_a: GO:0070875 ! positive regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0005980 ! positively regulates glycogen catabolic process relationship: RO:0002213 GO:0005980 ! positively regulates glycogen catabolic process [Term] id: GO:0045822 name: negative regulation of heart contraction is_a: GO:0008016 ! regulation of heart contraction is_a: GO:1903523 ! negative regulation of blood circulation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0060047 ! negatively regulates heart contraction relationship: RO:0002212 GO:0060047 ! negatively regulates heart contraction [Term] id: GO:0045823 name: positive regulation of heart contraction is_a: GO:0008016 ! regulation of heart contraction is_a: GO:1903524 ! positive regulation of blood circulation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0060047 ! positively regulates heart contraction relationship: RO:0002213 GO:0060047 ! positively regulates heart contraction [Term] id: GO:0045833 name: negative regulation of lipid metabolic process is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006629 ! negatively regulates lipid metabolic process relationship: RO:0002212 GO:0006629 ! negatively regulates lipid metabolic process [Term] id: GO:0045834 name: positive regulation of lipid metabolic process is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006629 ! positively regulates lipid metabolic process relationship: RO:0002213 GO:0006629 ! positively regulates lipid metabolic process [Term] id: GO:0045912 name: negative regulation of carbohydrate metabolic process is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0009892 ! negative regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0005975 ! negatively regulates carbohydrate metabolic process relationship: RO:0002212 GO:0005975 ! negatively regulates carbohydrate metabolic process [Term] id: GO:0045913 name: positive regulation of carbohydrate metabolic process is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0009893 ! positive regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0005975 ! positively regulates carbohydrate metabolic process relationship: RO:0002213 GO:0005975 ! positively regulates carbohydrate metabolic process [Term] id: GO:0045932 name: negative regulation of muscle contraction is_a: GO:0006937 ! regulation of muscle contraction is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006936 ! negatively regulates muscle contraction relationship: RO:0002212 GO:0006936 ! negatively regulates muscle contraction [Term] id: GO:0045933 name: positive regulation of muscle contraction is_a: GO:0006937 ! regulation of muscle contraction is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006936 ! positively regulates muscle contraction relationship: RO:0002213 GO:0006936 ! positively regulates muscle contraction [Term] id: GO:0045936 name: negative regulation of phosphate metabolic process is_a: GO:0010563 ! negative regulation of phosphorus metabolic process is_a: GO:0019220 ! regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006796 ! negatively regulates phosphate-containing compound metabolic process relationship: RO:0002212 GO:0006796 ! negatively regulates phosphate-containing compound metabolic process [Term] id: GO:0045937 name: positive regulation of phosphate metabolic process is_a: GO:0010562 ! positive regulation of phosphorus metabolic process is_a: GO:0019220 ! regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006796 ! positively regulates phosphate-containing compound metabolic process relationship: RO:0002213 GO:0006796 ! positively regulates phosphate-containing compound metabolic process [Term] id: GO:0045938 name: positive regulation of circadian sleep/wake cycle, sleep is_a: GO:0042753 ! positive regulation of circadian rhythm is_a: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep is_a: GO:0048520 ! positive regulation of behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0050802 ! positively regulates circadian sleep/wake cycle, sleep relationship: RO:0002213 GO:0050802 ! positively regulates circadian sleep/wake cycle, sleep [Term] id: GO:0045939 name: negative regulation of steroid metabolic process is_a: GO:0019218 ! regulation of steroid metabolic process is_a: GO:0045833 ! negative regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0008202 ! negatively regulates steroid metabolic process relationship: RO:0002212 GO:0008202 ! negatively regulates steroid metabolic process [Term] id: GO:0045940 name: positive regulation of steroid metabolic process is_a: GO:0019218 ! regulation of steroid metabolic process is_a: GO:0045834 ! positive regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0008202 ! positively regulates steroid metabolic process relationship: RO:0002213 GO:0008202 ! positively regulates steroid metabolic process [Term] id: GO:0045986 name: negative regulation of smooth muscle contraction is_a: GO:0006940 ! regulation of smooth muscle contraction is_a: GO:0045932 ! negative regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006939 ! negatively regulates smooth muscle contraction relationship: RO:0002212 GO:0006939 ! negatively regulates smooth muscle contraction [Term] id: GO:0045987 name: positive regulation of smooth muscle contraction is_a: GO:0006940 ! regulation of smooth muscle contraction is_a: GO:0045933 ! positive regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006939 ! positively regulates smooth muscle contraction relationship: RO:0002213 GO:0006939 ! positively regulates smooth muscle contraction [Term] id: GO:0045992 name: negative regulation of embryonic development is_a: GO:0045995 ! regulation of embryonic development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0009790 ! negatively regulates embryo development relationship: RO:0002212 GO:0009790 ! negatively regulates embryo development [Term] id: GO:0045995 name: regulation of embryonic development is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009790 ! regulates embryo development relationship: RO:0002211 GO:0009790 ! regulates embryo development [Term] id: GO:0046005 name: positive regulation of circadian sleep/wake cycle, REM sleep is_a: GO:0042320 ! regulation of circadian sleep/wake cycle, REM sleep is_a: GO:0045938 ! positive regulation of circadian sleep/wake cycle, sleep intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0042747 ! positively regulates circadian sleep/wake cycle, REM sleep relationship: RO:0002213 GO:0042747 ! positively regulates circadian sleep/wake cycle, REM sleep [Term] id: GO:0046010 name: positive regulation of circadian sleep/wake cycle, non-REM sleep is_a: GO:0045188 ! regulation of circadian sleep/wake cycle, non-REM sleep is_a: GO:0045938 ! positive regulation of circadian sleep/wake cycle, sleep intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0042748 ! positively regulates circadian sleep/wake cycle, non-REM sleep relationship: RO:0002213 GO:0042748 ! positively regulates circadian sleep/wake cycle, non-REM sleep [Term] id: GO:0046394 name: carboxylic acid biosynthetic process is_a: GO:0016053 ! organic acid biosynthetic process is_a: GO:0019752 ! carboxylic acid metabolic process [Term] id: GO:0046676 name: negative regulation of insulin secretion is_a: GO:0050709 ! negative regulation of protein secretion is_a: GO:0050796 ! regulation of insulin secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0030073 ! negatively regulates insulin secretion relationship: RO:0002212 GO:0030073 ! negatively regulates insulin secretion [Term] id: GO:0046717 name: acid secretion is_a: GO:0046903 ! secretion [Term] id: GO:0046879 name: hormone secretion is_a: GO:0009914 ! hormone transport is_a: GO:0023061 ! signal release [Term] id: GO:0046883 name: regulation of hormone secretion is_a: GO:0010646 ! regulation of cell communication is_a: GO:0010817 ! regulation of hormone levels is_a: GO:0023051 ! regulation of signaling is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0046879 ! regulates hormone secretion relationship: RO:0002211 GO:0046879 ! regulates hormone secretion [Term] id: GO:0046887 name: positive regulation of hormone secretion is_a: GO:0010647 ! positive regulation of cell communication is_a: GO:0023056 ! positive regulation of signaling is_a: GO:0046883 ! regulation of hormone secretion is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0046879 ! positively regulates hormone secretion relationship: RO:0002213 GO:0046879 ! positively regulates hormone secretion [Term] id: GO:0046888 name: negative regulation of hormone secretion is_a: GO:0010648 ! negative regulation of cell communication is_a: GO:0023057 ! negative regulation of signaling is_a: GO:0046883 ! regulation of hormone secretion is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0046879 ! negatively regulates hormone secretion relationship: RO:0002212 GO:0046879 ! negatively regulates hormone secretion [Term] id: GO:0046889 name: positive regulation of lipid biosynthetic process is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0045834 ! positive regulation of lipid metabolic process is_a: GO:0046890 ! regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0008610 ! positively regulates lipid biosynthetic process relationship: RO:0002213 GO:0008610 ! positively regulates lipid biosynthetic process [Term] id: GO:0046890 name: regulation of lipid biosynthetic process is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0008610 ! regulates lipid biosynthetic process relationship: RO:0002211 GO:0008610 ! regulates lipid biosynthetic process [Term] id: GO:0046903 name: secretion is_a: GO:0006810 ! transport [Term] id: GO:0046907 name: intracellular transport is_a: GO:0006810 ! transport is_a: GO:0051641 ! cellular localization is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0006810 ! transport intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure [Term] id: GO:0046942 name: carboxylic acid transport is_a: GO:0015711 ! organic anion transport is_a: GO:0015849 ! organic acid transport [Term] id: GO:0048243 name: norepinephrine secretion is_a: GO:0015874 ! norepinephrine transport is_a: GO:0023061 ! signal release is_a: GO:0050432 ! catecholamine secretion [Term] id: GO:0048332 name: mesoderm morphogenesis is_a: GO:0048729 ! tissue morphogenesis relationship: BFO:0000050 GO:0007498 ! part of mesoderm development [Term] id: GO:0048511 name: rhythmic process is_a: GO:0008150 ! biological_process [Term] id: GO:0048512 name: circadian behavior is_a: GO:0007622 ! rhythmic behavior is_a: GO:0007623 ! circadian rhythm [Term] id: GO:0048513 name: animal organ development is_a: GO:0048856 ! anatomical structure development [Term] id: GO:0048518 name: positive regulation of biological process is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0008150 ! positively regulates biological_process relationship: RO:0002213 GO:0008150 ! positively regulates biological_process [Term] id: GO:0048519 name: negative regulation of biological process is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0008150 ! negatively regulates biological_process relationship: RO:0002212 GO:0008150 ! negatively regulates biological_process [Term] id: GO:0048520 name: positive regulation of behavior is_a: GO:0050795 ! regulation of behavior is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007610 ! positively regulates behavior relationship: RO:0002213 GO:0007610 ! positively regulates behavior [Term] id: GO:0048521 name: negative regulation of behavior is_a: GO:0050795 ! regulation of behavior is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007610 ! negatively regulates behavior relationship: RO:0002212 GO:0007610 ! negatively regulates behavior [Term] id: GO:0048522 name: positive regulation of cellular process is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009987 ! positively regulates cellular process relationship: RO:0002213 GO:0009987 ! positively regulates cellular process [Term] id: GO:0048523 name: negative regulation of cellular process is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0009987 ! negatively regulates cellular process relationship: RO:0002212 GO:0009987 ! negatively regulates cellular process [Term] id: GO:0048580 name: regulation of post-embryonic development is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009791 ! regulates post-embryonic development relationship: RO:0002211 GO:0009791 ! regulates post-embryonic development [Term] id: GO:0048581 name: negative regulation of post-embryonic development is_a: GO:0048580 ! regulation of post-embryonic development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0009791 ! negatively regulates post-embryonic development relationship: RO:0002212 GO:0009791 ! negatively regulates post-embryonic development [Term] id: GO:0048582 name: positive regulation of post-embryonic development is_a: GO:0048580 ! regulation of post-embryonic development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009791 ! positively regulates post-embryonic development relationship: RO:0002213 GO:0009791 ! positively regulates post-embryonic development [Term] id: GO:0048583 name: regulation of response to stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0050896 ! regulates response to stimulus relationship: RO:0002211 GO:0050896 ! regulates response to stimulus [Term] id: GO:0048584 name: positive regulation of response to stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0050896 ! positively regulates response to stimulus relationship: RO:0002213 GO:0050896 ! positively regulates response to stimulus [Term] id: GO:0048585 name: negative regulation of response to stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0050896 ! negatively regulates response to stimulus relationship: RO:0002212 GO:0050896 ! negatively regulates response to stimulus [Term] id: GO:0048598 name: embryonic morphogenesis is_a: GO:0009653 ! anatomical structure morphogenesis relationship: BFO:0000050 GO:0009790 ! part of embryo development [Term] id: GO:0048609 name: multicellular organismal reproductive process is_a: GO:0022414 ! reproductive process relationship: BFO:0000050 GO:0032504 ! part of multicellular organism reproduction [Term] id: GO:0048646 name: anatomical structure formation involved in morphogenesis comment: Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense. is_a: GO:0032502 ! developmental process relationship: BFO:0000050 GO:0009653 ! part of anatomical structure morphogenesis [Term] id: GO:0048729 name: tissue morphogenesis is_a: GO:0009653 ! anatomical structure morphogenesis relationship: BFO:0000050 GO:0009888 ! part of tissue development [Term] id: GO:0048731 name: system development is_a: GO:0048856 ! anatomical structure development relationship: BFO:0000050 GO:0007275 ! part of multicellular organism development [Term] id: GO:0048754 name: branching morphogenesis of an epithelial tube is_a: GO:0035239 ! tube morphogenesis is_a: GO:0061138 ! morphogenesis of a branching epithelium relationship: BFO:0000050 GO:0060562 ! part of epithelial tube morphogenesis [Term] id: GO:0048770 name: pigment granule is_a: GO:0031410 ! cytoplasmic vesicle [Term] id: GO:0048856 name: anatomical structure development is_a: GO:0032502 ! developmental process [Term] id: GO:0048870 name: cell motility is_a: GO:0009987 ! cellular process property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/19809" xsd:anyURI [Term] id: GO:0048871 name: multicellular organismal-level homeostasis is_a: GO:0032501 ! multicellular organismal process is_a: GO:0042592 ! homeostatic process [Term] id: GO:0050432 name: catecholamine secretion is_a: GO:0032940 ! secretion by cell is_a: GO:0051937 ! catecholamine transport [Term] id: GO:0050433 name: regulation of catecholamine secretion is_a: GO:0051952 ! regulation of amine transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0050432 ! regulates catecholamine secretion relationship: RO:0002211 GO:0050432 ! regulates catecholamine secretion [Term] id: GO:0050708 name: regulation of protein secretion is_a: GO:0051223 ! regulation of protein transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009306 ! regulates protein secretion relationship: RO:0002211 GO:0009306 ! regulates protein secretion [Term] id: GO:0050709 name: negative regulation of protein secretion is_a: GO:0050708 ! regulation of protein secretion is_a: GO:0051224 ! negative regulation of protein transport is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0009306 ! negatively regulates protein secretion relationship: RO:0002212 GO:0009306 ! negatively regulates protein secretion [Term] id: GO:0050714 name: positive regulation of protein secretion is_a: GO:0050708 ! regulation of protein secretion is_a: GO:0051222 ! positive regulation of protein transport is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009306 ! positively regulates protein secretion relationship: RO:0002213 GO:0009306 ! positively regulates protein secretion [Term] id: GO:0050776 name: regulation of immune response is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006955 ! regulates immune response relationship: RO:0002211 GO:0006955 ! regulates immune response [Term] id: GO:0050777 name: negative regulation of immune response is_a: GO:0002683 ! negative regulation of immune system process is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006955 ! negatively regulates immune response relationship: RO:0002212 GO:0006955 ! negatively regulates immune response [Term] id: GO:0050778 name: positive regulation of immune response is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006955 ! positively regulates immune response relationship: RO:0002213 GO:0006955 ! positively regulates immune response [Term] id: GO:0050789 name: regulation of biological process is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0008150 ! regulates biological_process relationship: RO:0002211 GO:0008150 ! regulates biological_process [Term] id: GO:0050790 name: regulation of catalytic activity is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0003824 ! regulates catalytic activity relationship: RO:0002211 GO:0003824 ! regulates catalytic activity [Term] id: GO:0050793 name: regulation of developmental process is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0032502 ! regulates developmental process relationship: RO:0002211 GO:0032502 ! regulates developmental process [Term] id: GO:0050794 name: regulation of cellular process is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009987 ! regulates cellular process relationship: RO:0002211 GO:0009987 ! regulates cellular process [Term] id: GO:0050795 name: regulation of behavior is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007610 ! regulates behavior relationship: RO:0002211 GO:0007610 ! regulates behavior [Term] id: GO:0050796 name: regulation of insulin secretion is_a: GO:0050708 ! regulation of protein secretion is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0030073 ! regulates insulin secretion relationship: RO:0002211 GO:0030073 ! regulates insulin secretion [Term] id: GO:0050802 name: circadian sleep/wake cycle, sleep is_a: GO:0022410 ! circadian sleep/wake cycle process is_a: GO:0030431 ! sleep intersection_of: GO:0030431 ! sleep intersection_of: BFO:0000050 GO:0042745 ! part of circadian sleep/wake cycle [Term] id: GO:0050810 name: regulation of steroid biosynthetic process is_a: GO:0019218 ! regulation of steroid metabolic process is_a: GO:0046890 ! regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006694 ! regulates steroid biosynthetic process relationship: RO:0002211 GO:0006694 ! regulates steroid biosynthetic process [Term] id: GO:0050877 name: nervous system process is_a: GO:0003008 ! system process property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/13824" xsd:anyURI [Term] id: GO:0050878 name: regulation of body fluid levels is_a: GO:0065008 ! regulation of biological quality [Term] id: GO:0050879 name: multicellular organismal movement is_a: GO:0032501 ! multicellular organismal process [Term] id: GO:0050881 name: musculoskeletal movement is_a: GO:0050879 ! multicellular organismal movement is_a: GO:0050905 ! neuromuscular process [Term] id: GO:0050882 name: voluntary musculoskeletal movement is_a: GO:0050881 ! musculoskeletal movement [Term] id: GO:0050885 name: neuromuscular process controlling balance is_a: GO:0050905 ! neuromuscular process relationship: BFO:0000051 GO:0050881 ! has part musculoskeletal movement [Term] id: GO:0050886 name: endocrine process is_a: GO:0003008 ! system process [Term] id: GO:0050890 name: cognition is_a: GO:0050877 ! nervous system process [Term] id: GO:0050896 name: response to stimulus comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0008150 ! biological_process [Term] id: GO:0050905 name: neuromuscular process is_a: GO:0050877 ! nervous system process [Term] id: GO:0050906 name: detection of stimulus involved in sensory perception is_a: GO:0051606 ! detection of stimulus intersection_of: GO:0051606 ! detection of stimulus intersection_of: BFO:0000050 GO:0007600 ! part of sensory perception relationship: BFO:0000050 GO:0007600 ! part of sensory perception [Term] id: GO:0050907 name: detection of chemical stimulus involved in sensory perception is_a: GO:0009593 ! detection of chemical stimulus is_a: GO:0050906 ! detection of stimulus involved in sensory perception intersection_of: GO:0009593 ! detection of chemical stimulus intersection_of: BFO:0000050 GO:0007600 ! part of sensory perception relationship: BFO:0000050 GO:0007606 ! part of sensory perception of chemical stimulus [Term] id: GO:0050908 name: detection of light stimulus involved in visual perception is_a: GO:0009584 ! detection of visible light is_a: GO:0050962 ! detection of light stimulus involved in sensory perception intersection_of: GO:0009583 ! detection of light stimulus intersection_of: BFO:0000050 GO:0007601 ! part of visual perception relationship: BFO:0000050 GO:0007601 ! part of visual perception [Term] id: GO:0050909 name: sensory perception of taste is_a: GO:0007606 ! sensory perception of chemical stimulus [Term] id: GO:0050910 name: detection of mechanical stimulus involved in sensory perception of sound is_a: GO:0050877 ! nervous system process is_a: GO:0050974 ! detection of mechanical stimulus involved in sensory perception intersection_of: GO:0050982 ! detection of mechanical stimulus intersection_of: BFO:0000050 GO:0007605 ! part of sensory perception of sound relationship: BFO:0000050 GO:0007605 ! part of sensory perception of sound [Term] id: GO:0050911 name: detection of chemical stimulus involved in sensory perception of smell is_a: GO:0050907 ! detection of chemical stimulus involved in sensory perception intersection_of: GO:0009593 ! detection of chemical stimulus intersection_of: BFO:0000050 GO:0007608 ! part of sensory perception of smell relationship: BFO:0000050 GO:0007608 ! part of sensory perception of smell [Term] id: GO:0050912 name: detection of chemical stimulus involved in sensory perception of taste is_a: GO:0050907 ! detection of chemical stimulus involved in sensory perception intersection_of: GO:0009593 ! detection of chemical stimulus intersection_of: BFO:0000050 GO:0050909 ! part of sensory perception of taste relationship: BFO:0000050 GO:0050909 ! part of sensory perception of taste [Term] id: GO:0050951 name: sensory perception of temperature stimulus is_a: GO:0007600 ! sensory perception [Term] id: GO:0050952 name: sensory perception of electrical stimulus is_a: GO:0007600 ! sensory perception [Term] id: GO:0050953 name: sensory perception of light stimulus is_a: GO:0007600 ! sensory perception [Term] id: GO:0050954 name: sensory perception of mechanical stimulus is_a: GO:0007600 ! sensory perception [Term] id: GO:0050955 name: thermoception is_a: GO:0050951 ! sensory perception of temperature stimulus [Term] id: GO:0050957 name: equilibrioception is_a: GO:0007600 ! sensory perception relationship: BFO:0000050 GO:0050885 ! part of neuromuscular process controlling balance [Term] id: GO:0050960 name: detection of temperature stimulus involved in thermoception is_a: GO:0050961 ! detection of temperature stimulus involved in sensory perception intersection_of: GO:0016048 ! detection of temperature stimulus intersection_of: BFO:0000050 GO:0050955 ! part of thermoception relationship: BFO:0000050 GO:0050955 ! part of thermoception [Term] id: GO:0050961 name: detection of temperature stimulus involved in sensory perception is_a: GO:0016048 ! detection of temperature stimulus is_a: GO:0050906 ! detection of stimulus involved in sensory perception intersection_of: GO:0016048 ! detection of temperature stimulus intersection_of: BFO:0000050 GO:0007600 ! part of sensory perception relationship: BFO:0000050 GO:0050951 ! part of sensory perception of temperature stimulus [Term] id: GO:0050962 name: detection of light stimulus involved in sensory perception is_a: GO:0009583 ! detection of light stimulus is_a: GO:0050906 ! detection of stimulus involved in sensory perception intersection_of: GO:0009583 ! detection of light stimulus intersection_of: BFO:0000050 GO:0007600 ! part of sensory perception relationship: BFO:0000050 GO:0050953 ! part of sensory perception of light stimulus [Term] id: GO:0050963 name: detection of electrical stimulus involved in sensory perception is_a: GO:0050906 ! detection of stimulus involved in sensory perception is_a: GO:0050981 ! detection of electrical stimulus intersection_of: GO:0050981 ! detection of electrical stimulus intersection_of: BFO:0000050 GO:0007600 ! part of sensory perception relationship: BFO:0000050 GO:0050952 ! part of sensory perception of electrical stimulus [Term] id: GO:0050965 name: detection of temperature stimulus involved in sensory perception of pain is_a: GO:0050961 ! detection of temperature stimulus involved in sensory perception is_a: GO:0062149 ! detection of stimulus involved in sensory perception of pain intersection_of: GO:0016048 ! detection of temperature stimulus intersection_of: BFO:0000050 GO:0019233 ! part of sensory perception of pain [Term] id: GO:0050966 name: detection of mechanical stimulus involved in sensory perception of pain is_a: GO:0050974 ! detection of mechanical stimulus involved in sensory perception is_a: GO:0062149 ! detection of stimulus involved in sensory perception of pain intersection_of: GO:0050982 ! detection of mechanical stimulus intersection_of: BFO:0000050 GO:0019233 ! part of sensory perception of pain [Term] id: GO:0050967 name: detection of electrical stimulus involved in sensory perception of pain is_a: GO:0050963 ! detection of electrical stimulus involved in sensory perception is_a: GO:0062149 ! detection of stimulus involved in sensory perception of pain intersection_of: GO:0050981 ! detection of electrical stimulus intersection_of: BFO:0000050 GO:0019233 ! part of sensory perception of pain [Term] id: GO:0050968 name: detection of chemical stimulus involved in sensory perception of pain is_a: GO:0050907 ! detection of chemical stimulus involved in sensory perception is_a: GO:0062149 ! detection of stimulus involved in sensory perception of pain intersection_of: GO:0009593 ! detection of chemical stimulus intersection_of: BFO:0000050 GO:0019233 ! part of sensory perception of pain [Term] id: GO:0050973 name: detection of mechanical stimulus involved in equilibrioception is_a: GO:0050974 ! detection of mechanical stimulus involved in sensory perception intersection_of: GO:0050982 ! detection of mechanical stimulus intersection_of: BFO:0000050 GO:0050957 ! part of equilibrioception relationship: BFO:0000050 GO:0050957 ! part of equilibrioception [Term] id: GO:0050974 name: detection of mechanical stimulus involved in sensory perception is_a: GO:0050906 ! detection of stimulus involved in sensory perception is_a: GO:0050982 ! detection of mechanical stimulus intersection_of: GO:0050982 ! detection of mechanical stimulus intersection_of: BFO:0000050 GO:0007600 ! part of sensory perception relationship: BFO:0000050 GO:0050954 ! part of sensory perception of mechanical stimulus [Term] id: GO:0050975 name: sensory perception of touch is_a: GO:0050954 ! sensory perception of mechanical stimulus [Term] id: GO:0050976 name: detection of mechanical stimulus involved in sensory perception of touch is_a: GO:0050974 ! detection of mechanical stimulus involved in sensory perception intersection_of: GO:0050982 ! detection of mechanical stimulus intersection_of: BFO:0000050 GO:0050975 ! part of sensory perception of touch relationship: BFO:0000050 GO:0050975 ! part of sensory perception of touch [Term] id: GO:0050981 name: detection of electrical stimulus is_a: GO:0009582 ! detection of abiotic stimulus is_a: GO:0051602 ! response to electrical stimulus [Term] id: GO:0050982 name: detection of mechanical stimulus is_a: GO:0009581 ! detection of external stimulus is_a: GO:0009582 ! detection of abiotic stimulus is_a: GO:0009612 ! response to mechanical stimulus [Term] id: GO:0051046 name: regulation of secretion is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0046903 ! regulates secretion relationship: RO:0002211 GO:0046903 ! regulates secretion [Term] id: GO:0051047 name: positive regulation of secretion is_a: GO:0051046 ! regulation of secretion is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0046903 ! positively regulates secretion relationship: RO:0002213 GO:0046903 ! positively regulates secretion [Term] id: GO:0051048 name: negative regulation of secretion is_a: GO:0051046 ! regulation of secretion is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0046903 ! negatively regulates secretion relationship: RO:0002212 GO:0046903 ! negatively regulates secretion [Term] id: GO:0051049 name: regulation of transport is_a: GO:0032879 ! regulation of localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006810 ! regulates transport relationship: RO:0002211 GO:0006810 ! regulates transport [Term] id: GO:0051050 name: positive regulation of transport is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006810 ! positively regulates transport relationship: RO:0002213 GO:0006810 ! positively regulates transport [Term] id: GO:0051051 name: negative regulation of transport is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006810 ! negatively regulates transport relationship: RO:0002212 GO:0006810 ! negatively regulates transport [Term] id: GO:0051055 name: negative regulation of lipid biosynthetic process is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0045833 ! negative regulation of lipid metabolic process is_a: GO:0046890 ! regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0008610 ! negatively regulates lipid biosynthetic process relationship: RO:0002212 GO:0008610 ! negatively regulates lipid biosynthetic process [Term] id: GO:0051093 name: negative regulation of developmental process is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0032502 ! negatively regulates developmental process relationship: RO:0002212 GO:0032502 ! negatively regulates developmental process [Term] id: GO:0051094 name: positive regulation of developmental process is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0032502 ! positively regulates developmental process relationship: RO:0002213 GO:0032502 ! positively regulates developmental process [Term] id: GO:0051128 name: regulation of cellular component organization is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0016043 ! regulates cellular component organization relationship: RO:0002211 GO:0016043 ! regulates cellular component organization [Term] id: GO:0051129 name: negative regulation of cellular component organization is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0016043 ! negatively regulates cellular component organization relationship: RO:0002212 GO:0016043 ! negatively regulates cellular component organization [Term] id: GO:0051130 name: positive regulation of cellular component organization is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0016043 ! positively regulates cellular component organization relationship: RO:0002213 GO:0016043 ! positively regulates cellular component organization [Term] id: GO:0051174 name: regulation of phosphorus metabolic process is_a: GO:0031323 ! regulation of cellular metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006793 ! regulates phosphorus metabolic process relationship: RO:0002211 GO:0006793 ! regulates phosphorus metabolic process [Term] id: GO:0051179 name: localization is_a: GO:0008150 ! biological_process [Term] id: GO:0051216 name: cartilage development is_a: GO:0048513 ! animal organ development relationship: BFO:0000050 GO:0001501 ! part of skeletal system development relationship: BFO:0000050 GO:0061448 ! part of connective tissue development [Term] id: GO:0051222 name: positive regulation of protein transport is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051223 ! regulation of protein transport is_a: GO:1904951 ! positive regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0015031 ! positively regulates protein transport relationship: RO:0002213 GO:0015031 ! positively regulates protein transport [Term] id: GO:0051223 name: regulation of protein transport is_a: GO:0051049 ! regulation of transport is_a: GO:0070201 ! regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0015031 ! regulates protein transport relationship: RO:0002211 GO:0015031 ! regulates protein transport [Term] id: GO:0051224 name: negative regulation of protein transport is_a: GO:0051051 ! negative regulation of transport is_a: GO:0051223 ! regulation of protein transport is_a: GO:1904950 ! negative regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0015031 ! negatively regulates protein transport relationship: RO:0002212 GO:0015031 ! negatively regulates protein transport [Term] id: GO:0051234 name: establishment of localization is_a: GO:0051179 ! localization [Term] id: GO:0051239 name: regulation of multicellular organismal process is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0032501 ! regulates multicellular organismal process relationship: RO:0002211 GO:0032501 ! regulates multicellular organismal process [Term] id: GO:0051240 name: positive regulation of multicellular organismal process is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process [Term] id: GO:0051241 name: negative regulation of multicellular organismal process is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process [Term] id: GO:0051301 name: cell division comment: Note that this term differs from 'cytokinesis ; GO:0000910' in that cytokinesis does not include nuclear division. is_a: GO:0009987 ! cellular process [Term] id: GO:0051302 name: regulation of cell division is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0051301 ! regulates cell division relationship: RO:0002211 GO:0051301 ! regulates cell division [Term] id: GO:0051338 name: regulation of transferase activity comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0016740 ! regulates transferase activity relationship: RO:0002211 GO:0016740 ! regulates transferase activity [Term] id: GO:0051347 name: positive regulation of transferase activity comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. is_a: GO:0043085 ! positive regulation of catalytic activity is_a: GO:0051338 ! regulation of transferase activity intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0016740 ! positively regulates transferase activity relationship: RO:0002213 GO:0016740 ! positively regulates transferase activity [Term] id: GO:0051348 name: negative regulation of transferase activity comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. is_a: GO:0043086 ! negative regulation of catalytic activity is_a: GO:0051338 ! regulation of transferase activity intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0016740 ! negatively regulates transferase activity relationship: RO:0002212 GO:0016740 ! negatively regulates transferase activity [Term] id: GO:0051356 name: visual perception involved in equilibrioception is_a: GO:0007601 ! visual perception intersection_of: GO:0007601 ! visual perception intersection_of: BFO:0000050 GO:0050957 ! part of equilibrioception relationship: BFO:0000050 GO:0050957 ! part of equilibrioception [Term] id: GO:0051602 name: response to electrical stimulus is_a: GO:0009628 ! response to abiotic stimulus [Term] id: GO:0051606 name: detection of stimulus is_a: GO:0050896 ! response to stimulus [Term] id: GO:0051641 name: cellular localization is_a: GO:0009987 ! cellular process is_a: GO:0051179 ! localization [Term] id: GO:0051649 name: establishment of localization in cell is_a: GO:0051234 ! establishment of localization relationship: BFO:0000050 GO:0051641 ! part of cellular localization [Term] id: GO:0051703 name: biological process involved in intraspecies interaction between organisms is_a: GO:0008150 ! biological_process property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/20191" xsd:anyURI [Term] id: GO:0051781 name: positive regulation of cell division is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051302 ! regulation of cell division intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0051301 ! positively regulates cell division relationship: RO:0002213 GO:0051301 ! positively regulates cell division [Term] id: GO:0051782 name: negative regulation of cell division is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051302 ! regulation of cell division intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0051301 ! negatively regulates cell division relationship: RO:0002212 GO:0051301 ! negatively regulates cell division [Term] id: GO:0051930 name: regulation of sensory perception of pain is_a: GO:0051931 ! regulation of sensory perception intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0019233 ! regulates sensory perception of pain relationship: RO:0002211 GO:0019233 ! regulates sensory perception of pain [Term] id: GO:0051931 name: regulation of sensory perception is_a: GO:0031644 ! regulation of nervous system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007600 ! regulates sensory perception relationship: RO:0002211 GO:0007600 ! regulates sensory perception [Term] id: GO:0051937 name: catecholamine transport is_a: GO:0015844 ! monoamine transport is_a: GO:0015850 ! organic hydroxy compound transport [Term] id: GO:0051952 name: regulation of amine transport is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0015837 ! regulates amine transport relationship: RO:0002211 GO:0015837 ! regulates amine transport [Term] id: GO:0051953 name: negative regulation of amine transport is_a: GO:0051051 ! negative regulation of transport is_a: GO:0051952 ! regulation of amine transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0015837 ! negatively regulates amine transport relationship: RO:0002212 GO:0015837 ! negatively regulates amine transport [Term] id: GO:0051954 name: positive regulation of amine transport is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051952 ! regulation of amine transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0015837 ! positively regulates amine transport relationship: RO:0002213 GO:0015837 ! positively regulates amine transport [Term] id: GO:0051960 name: regulation of nervous system development is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007399 ! regulates nervous system development relationship: RO:0002211 GO:0007399 ! regulates nervous system development [Term] id: GO:0051961 name: negative regulation of nervous system development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0051960 ! regulation of nervous system development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007399 ! negatively regulates nervous system development relationship: RO:0002212 GO:0007399 ! negatively regulates nervous system development [Term] id: GO:0051962 name: positive regulation of nervous system development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0051960 ! regulation of nervous system development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007399 ! positively regulates nervous system development relationship: RO:0002213 GO:0007399 ! positively regulates nervous system development [Term] id: GO:0060004 name: reflex is_a: GO:0009605 ! response to external stimulus [Term] id: GO:0060005 name: vestibular reflex is_a: GO:0060004 ! reflex [Term] id: GO:0060047 name: heart contraction is_a: GO:0003015 ! heart process relationship: BFO:0000050 GO:0008015 ! part of blood circulation [Term] id: GO:0060073 name: micturition is_a: GO:0003014 ! renal system process is_a: GO:0007588 ! excretion [Term] id: GO:0060083 name: smooth muscle contraction involved in micturition is_a: GO:0014832 ! urinary bladder smooth muscle contraction intersection_of: GO:0006939 ! smooth muscle contraction intersection_of: BFO:0000050 GO:0060073 ! part of micturition relationship: BFO:0000050 GO:0060073 ! part of micturition [Term] id: GO:0060179 name: male mating behavior is_a: GO:0007617 ! mating behavior [Term] id: GO:0060180 name: female mating behavior is_a: GO:0007617 ! mating behavior [Term] id: GO:0060255 name: regulation of macromolecule metabolic process is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0043170 ! regulates macromolecule metabolic process relationship: RO:0002211 GO:0043170 ! regulates macromolecule metabolic process [Term] id: GO:0060259 name: regulation of feeding behavior is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007631 ! regulates feeding behavior relationship: RO:0002211 GO:0007631 ! regulates feeding behavior [Term] id: GO:0060273 name: crying behavior is_a: GO:0007610 ! behavior [Term] id: GO:0060341 name: regulation of cellular localization is_a: GO:0032879 ! regulation of localization is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0051641 ! regulates cellular localization relationship: RO:0002211 GO:0051641 ! regulates cellular localization [Term] id: GO:0060429 name: epithelium development is_a: GO:0009888 ! tissue development [Term] id: GO:0060453 name: regulation of gastric acid secretion is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0001696 ! regulates gastric acid secretion relationship: RO:0002211 GO:0001696 ! regulates gastric acid secretion [Term] id: GO:0060454 name: positive regulation of gastric acid secretion is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0060453 ! regulation of gastric acid secretion is_a: GO:0060456 ! positive regulation of digestive system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0001696 ! positively regulates gastric acid secretion relationship: RO:0002213 GO:0001696 ! positively regulates gastric acid secretion [Term] id: GO:0060455 name: negative regulation of gastric acid secretion is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0060453 ! regulation of gastric acid secretion is_a: GO:0060457 ! negative regulation of digestive system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0001696 ! negatively regulates gastric acid secretion relationship: RO:0002212 GO:0001696 ! negatively regulates gastric acid secretion [Term] id: GO:0060456 name: positive regulation of digestive system process is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0022600 ! positively regulates digestive system process relationship: RO:0002213 GO:0022600 ! positively regulates digestive system process [Term] id: GO:0060457 name: negative regulation of digestive system process is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0022600 ! negatively regulates digestive system process relationship: RO:0002212 GO:0022600 ! negatively regulates digestive system process [Term] id: GO:0060562 name: epithelial tube morphogenesis is_a: GO:0002009 ! morphogenesis of an epithelium is_a: GO:0035239 ! tube morphogenesis [Term] id: GO:0060688 name: regulation of morphogenesis of a branching structure is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0001763 ! regulates morphogenesis of a branching structure relationship: RO:0002211 GO:0001763 ! regulates morphogenesis of a branching structure [Term] id: GO:0061007 name: hepaticobiliary system process is_a: GO:0003008 ! system process [Term] id: GO:0061024 name: membrane organization is_a: GO:0016043 ! cellular component organization [Term] id: GO:0061035 name: regulation of cartilage development is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0051216 ! regulates cartilage development relationship: RO:0002211 GO:0051216 ! regulates cartilage development [Term] id: GO:0061036 name: positive regulation of cartilage development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0061035 ! regulation of cartilage development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0051216 ! positively regulates cartilage development relationship: RO:0002213 GO:0051216 ! positively regulates cartilage development [Term] id: GO:0061037 name: negative regulation of cartilage development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0061035 ! regulation of cartilage development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0051216 ! negatively regulates cartilage development relationship: RO:0002212 GO:0051216 ! negatively regulates cartilage development [Term] id: GO:0061062 name: regulation of nematode larval development is_a: GO:0048580 ! regulation of post-embryonic development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0002119 ! regulates nematode larval development relationship: RO:0002211 GO:0002119 ! regulates nematode larval development [Term] id: GO:0061063 name: positive regulation of nematode larval development is_a: GO:0048582 ! positive regulation of post-embryonic development is_a: GO:0061062 ! regulation of nematode larval development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0002119 ! positively regulates nematode larval development relationship: RO:0002213 GO:0002119 ! positively regulates nematode larval development [Term] id: GO:0061064 name: negative regulation of nematode larval development is_a: GO:0048581 ! negative regulation of post-embryonic development is_a: GO:0061062 ! regulation of nematode larval development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0002119 ! negatively regulates nematode larval development relationship: RO:0002212 GO:0002119 ! negatively regulates nematode larval development [Term] id: GO:0061138 name: morphogenesis of a branching epithelium is_a: GO:0001763 ! morphogenesis of a branching structure is_a: GO:0002009 ! morphogenesis of an epithelium [Term] id: GO:0061448 name: connective tissue development is_a: GO:0009888 ! tissue development [Term] id: GO:0062012 name: regulation of small molecule metabolic process is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0044281 ! regulates small molecule metabolic process relationship: RO:0002211 GO:0044281 ! regulates small molecule metabolic process [Term] id: GO:0062013 name: positive regulation of small molecule metabolic process is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0044281 ! positively regulates small molecule metabolic process relationship: RO:0002213 GO:0044281 ! positively regulates small molecule metabolic process [Term] id: GO:0062014 name: negative regulation of small molecule metabolic process is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0044281 ! negatively regulates small molecule metabolic process relationship: RO:0002212 GO:0044281 ! negatively regulates small molecule metabolic process [Term] id: GO:0062023 name: collagen-containing extracellular matrix is_a: GO:0031012 ! extracellular matrix [Term] id: GO:0062149 name: detection of stimulus involved in sensory perception of pain is_a: GO:0050906 ! detection of stimulus involved in sensory perception intersection_of: GO:0051606 ! detection of stimulus intersection_of: BFO:0000050 GO:0019233 ! part of sensory perception of pain relationship: BFO:0000050 GO:0019233 ! part of sensory perception of pain [Term] id: GO:0065007 name: biological regulation is_a: GO:0008150 ! biological_process [Term] id: GO:0065008 name: regulation of biological quality is_a: GO:0065007 ! biological regulation [Term] id: GO:0065009 name: regulation of molecular function is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0003674 ! regulates molecular_function relationship: RO:0002211 GO:0003674 ! regulates molecular_function [Term] id: GO:0065010 name: extracellular membrane-bounded organelle is_a: GO:0043227 ! membrane-bounded organelle is_a: GO:0043230 ! extracellular organelle intersection_of: GO:0043227 ! membrane-bounded organelle intersection_of: BFO:0000050 GO:0005576 ! part of extracellular region [Term] id: GO:0070075 name: tear secretion is_a: GO:0007589 ! body fluid secretion is_a: GO:0032941 ! secretion by tissue [Term] id: GO:0070091 name: glucagon secretion is_a: GO:0030072 ! peptide hormone secretion [Term] id: GO:0070092 name: regulation of glucagon secretion is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0070091 ! regulates glucagon secretion relationship: RO:0002211 GO:0070091 ! regulates glucagon secretion [Term] id: GO:0070093 name: negative regulation of glucagon secretion is_a: GO:0070092 ! regulation of glucagon secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0070091 ! negatively regulates glucagon secretion relationship: RO:0002212 GO:0070091 ! negatively regulates glucagon secretion [Term] id: GO:0070094 name: positive regulation of glucagon secretion is_a: GO:0070092 ! regulation of glucagon secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0070091 ! positively regulates glucagon secretion relationship: RO:0002213 GO:0070091 ! positively regulates glucagon secretion [Term] id: GO:0070161 name: anchoring junction is_a: GO:0030054 ! cell junction [Term] id: GO:0070201 name: regulation of establishment of protein localization is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0045184 ! regulates establishment of protein localization relationship: RO:0002211 GO:0045184 ! regulates establishment of protein localization [Term] id: GO:0070253 name: somatostatin secretion is_a: GO:0030072 ! peptide hormone secretion [Term] id: GO:0070254 name: mucus secretion is_a: GO:0007589 ! body fluid secretion is_a: GO:0032941 ! secretion by tissue [Term] id: GO:0070255 name: regulation of mucus secretion is_a: GO:0050878 ! regulation of body fluid levels is_a: GO:0051046 ! regulation of secretion is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0070254 ! regulates mucus secretion relationship: RO:0002211 GO:0070254 ! regulates mucus secretion [Term] id: GO:0070256 name: negative regulation of mucus secretion is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0070255 ! regulation of mucus secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0070254 ! negatively regulates mucus secretion relationship: RO:0002212 GO:0070254 ! negatively regulates mucus secretion [Term] id: GO:0070257 name: positive regulation of mucus secretion is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0070255 ! regulation of mucus secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0070254 ! positively regulates mucus secretion relationship: RO:0002213 GO:0070254 ! positively regulates mucus secretion [Term] id: GO:0070727 name: cellular macromolecule localization is_a: GO:0033036 ! macromolecule localization is_a: GO:0051641 ! cellular localization [Term] id: GO:0070857 name: regulation of bile acid biosynthetic process is_a: GO:0010565 ! regulation of cellular ketone metabolic process is_a: GO:0031326 ! regulation of cellular biosynthetic process is_a: GO:0050810 ! regulation of steroid biosynthetic process is_a: GO:1904251 ! regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006699 ! regulates bile acid biosynthetic process relationship: RO:0002211 GO:0006699 ! regulates bile acid biosynthetic process [Term] id: GO:0070858 name: negative regulation of bile acid biosynthetic process is_a: GO:0010894 ! negative regulation of steroid biosynthetic process is_a: GO:0031327 ! negative regulation of cellular biosynthetic process is_a: GO:0070857 ! regulation of bile acid biosynthetic process is_a: GO:1904252 ! negative regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006699 ! negatively regulates bile acid biosynthetic process relationship: RO:0002212 GO:0006699 ! negatively regulates bile acid biosynthetic process [Term] id: GO:0070859 name: positive regulation of bile acid biosynthetic process is_a: GO:0010893 ! positive regulation of steroid biosynthetic process is_a: GO:0031328 ! positive regulation of cellular biosynthetic process is_a: GO:0070857 ! regulation of bile acid biosynthetic process is_a: GO:1904253 ! positive regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006699 ! positively regulates bile acid biosynthetic process relationship: RO:0002213 GO:0006699 ! positively regulates bile acid biosynthetic process [Term] id: GO:0070873 name: regulation of glycogen metabolic process is_a: GO:0032881 ! regulation of polysaccharide metabolic process is_a: GO:0043467 ! regulation of generation of precursor metabolites and energy intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0005977 ! regulates glycogen metabolic process relationship: RO:0002211 GO:0005977 ! regulates glycogen metabolic process [Term] id: GO:0070874 name: negative regulation of glycogen metabolic process is_a: GO:0010605 ! negative regulation of macromolecule metabolic process is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process is_a: GO:0070873 ! regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0005977 ! negatively regulates glycogen metabolic process relationship: RO:0002212 GO:0005977 ! negatively regulates glycogen metabolic process [Term] id: GO:0070875 name: positive regulation of glycogen metabolic process is_a: GO:0010604 ! positive regulation of macromolecule metabolic process is_a: GO:0010907 ! positive regulation of glucose metabolic process is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0070873 ! regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0005977 ! positively regulates glycogen metabolic process relationship: RO:0002213 GO:0005977 ! positively regulates glycogen metabolic process [Term] id: GO:0071626 name: mastication is_a: GO:0022600 ! digestive system process [Term] id: GO:0071692 name: protein localization to extracellular region is_a: GO:0008104 ! protein localization [Term] id: GO:0071702 name: organic substance transport is_a: GO:0006810 ! transport [Term] id: GO:0071704 name: organic substance metabolic process is_a: GO:0008152 ! metabolic process [Term] id: GO:0071705 name: nitrogen compound transport is_a: GO:0006810 ! transport [Term] id: GO:0071840 name: cellular component organization or biogenesis is_a: GO:0009987 ! cellular process [Term] id: GO:0071944 name: cell periphery is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0071953 name: elastic fiber is_a: GO:0099512 ! supramolecular fiber relationship: BFO:0000050 GO:0031012 ! part of extracellular matrix [Term] id: GO:0072175 name: epithelial tube formation is_a: GO:0035148 ! tube formation relationship: BFO:0000050 GO:0060562 ! part of epithelial tube morphogenesis property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22302" xsd:anyURI [Term] id: GO:0072201 name: negative regulation of mesenchymal cell proliferation is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0010464 ! regulation of mesenchymal cell proliferation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0010463 ! negatively regulates mesenchymal cell proliferation relationship: RO:0002212 GO:0010463 ! negatively regulates mesenchymal cell proliferation [Term] id: GO:0072330 name: monocarboxylic acid biosynthetic process is_a: GO:0032787 ! monocarboxylic acid metabolic process is_a: GO:0046394 ! carboxylic acid biosynthetic process [Term] id: GO:0080090 name: regulation of primary metabolic process is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0044238 ! regulates primary metabolic process relationship: RO:0002211 GO:0044238 ! regulates primary metabolic process [Term] id: GO:0080134 name: regulation of response to stress comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0006950 ! regulates response to stress relationship: RO:0002211 GO:0006950 ! regulates response to stress [Term] id: GO:0090087 name: regulation of peptide transport is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0015833 ! regulates peptide transport relationship: RO:0002211 GO:0015833 ! regulates peptide transport [Term] id: GO:0090257 name: regulation of muscle system process is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0003012 ! regulates muscle system process relationship: RO:0002211 GO:0003012 ! regulates muscle system process [Term] id: GO:0090273 name: regulation of somatostatin secretion is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0070253 ! regulates somatostatin secretion relationship: RO:0002211 GO:0070253 ! regulates somatostatin secretion [Term] id: GO:0090274 name: positive regulation of somatostatin secretion is_a: GO:0090273 ! regulation of somatostatin secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0070253 ! positively regulates somatostatin secretion relationship: RO:0002213 GO:0070253 ! positively regulates somatostatin secretion [Term] id: GO:0090275 name: negative regulation of somatostatin secretion is_a: GO:0090273 ! regulation of somatostatin secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0070253 ! negatively regulates somatostatin secretion relationship: RO:0002212 GO:0070253 ! negatively regulates somatostatin secretion [Term] id: GO:0090276 name: regulation of peptide hormone secretion is_a: GO:0002791 ! regulation of peptide secretion is_a: GO:0046883 ! regulation of hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0030072 ! regulates peptide hormone secretion relationship: RO:0002211 GO:0030072 ! regulates peptide hormone secretion [Term] id: GO:0090277 name: positive regulation of peptide hormone secretion is_a: GO:0002793 ! positive regulation of peptide secretion is_a: GO:0046887 ! positive regulation of hormone secretion is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0030072 ! positively regulates peptide hormone secretion relationship: RO:0002213 GO:0030072 ! positively regulates peptide hormone secretion [Term] id: GO:0090278 name: negative regulation of peptide hormone secretion is_a: GO:0002792 ! negative regulation of peptide secretion is_a: GO:0046888 ! negative regulation of hormone secretion is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0030072 ! negatively regulates peptide hormone secretion relationship: RO:0002212 GO:0030072 ! negatively regulates peptide hormone secretion [Term] id: GO:0090316 name: positive regulation of intracellular protein transport is_a: GO:0032388 ! positive regulation of intracellular transport is_a: GO:0033157 ! regulation of intracellular protein transport is_a: GO:0051222 ! positive regulation of protein transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0006886 ! positively regulates intracellular protein transport relationship: RO:0002213 GO:0006886 ! positively regulates intracellular protein transport [Term] id: GO:0090317 name: negative regulation of intracellular protein transport is_a: GO:0032387 ! negative regulation of intracellular transport is_a: GO:0033157 ! regulation of intracellular protein transport is_a: GO:0051224 ! negative regulation of protein transport intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0006886 ! negatively regulates intracellular protein transport relationship: RO:0002212 GO:0006886 ! negatively regulates intracellular protein transport [Term] id: GO:0090325 name: regulation of locomotion involved in locomotory behavior is_a: GO:0040012 ! regulation of locomotion is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0031987 ! regulates locomotion involved in locomotory behavior relationship: RO:0002211 GO:0031987 ! regulates locomotion involved in locomotory behavior [Term] id: GO:0090326 name: positive regulation of locomotion involved in locomotory behavior is_a: GO:0040017 ! positive regulation of locomotion is_a: GO:0048520 ! positive regulation of behavior is_a: GO:0090325 ! regulation of locomotion involved in locomotory behavior intersection_of: GO:0050789 ! regulation of biological process intersection_of: RO:0002213 GO:0031987 ! positively regulates locomotion involved in locomotory behavior relationship: RO:0002213 GO:0031987 ! positively regulates locomotion involved in locomotory behavior [Term] id: GO:0090327 name: negative regulation of locomotion involved in locomotory behavior is_a: GO:0040013 ! negative regulation of locomotion is_a: GO:0048521 ! negative regulation of behavior is_a: GO:0090325 ! regulation of locomotion involved in locomotory behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0031987 ! negatively regulates locomotion involved in locomotory behavior relationship: RO:0002212 GO:0031987 ! negatively regulates locomotion involved in locomotory behavior [Term] id: GO:0097254 name: renal tubular secretion is_a: GO:0003014 ! renal system process is_a: GO:0007588 ! excretion property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22368" xsd:anyURI [Term] id: GO:0097708 name: intracellular vesicle is_a: GO:0031982 ! vesicle is_a: GO:0043231 ! intracellular membrane-bounded organelle intersection_of: GO:0031982 ! vesicle intersection_of: BFO:0000050 GO:0005622 ! part of intracellular anatomical structure [Term] id: GO:0098590 name: plasma membrane region comment: Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. is_a: GO:0016020 ! membrane intersection_of: GO:0016020 ! membrane intersection_of: BFO:0000050 GO:0005886 ! part of plasma membrane relationship: BFO:0000050 GO:0005886 ! part of plasma membrane [Term] id: GO:0098642 name: network-forming collagen trimer is_a: GO:0005581 ! collagen trimer intersection_of: GO:0005581 ! collagen trimer intersection_of: BFO:0000050 GO:0098645 ! part of collagen network relationship: BFO:0000050 GO:0098645 ! part of collagen network [Term] id: GO:0098643 name: banded collagen fibril is_a: GO:0098644 ! complex of collagen trimers is_a: GO:0099512 ! supramolecular fiber [Term] id: GO:0098644 name: complex of collagen trimers is_a: GO:0099080 ! supramolecular complex relationship: BFO:0000050 GO:0062023 ! part of collagen-containing extracellular matrix relationship: BFO:0000051 GO:0005581 ! has part collagen trimer [Term] id: GO:0098645 name: collagen network is_a: GO:0098644 ! complex of collagen trimers is_a: GO:0099081 ! supramolecular polymer [Term] id: GO:0098651 name: basement membrane collagen trimer is_a: GO:0005581 ! collagen trimer intersection_of: GO:0005581 ! collagen trimer intersection_of: BFO:0000050 GO:0005604 ! part of basement membrane relationship: BFO:0000050 GO:0005604 ! part of basement membrane [Term] id: GO:0098796 name: membrane protein complex is_a: GO:0032991 ! protein-containing complex intersection_of: GO:0032991 ! protein-containing complex intersection_of: BFO:0000050 GO:0016020 ! part of membrane relationship: BFO:0000050 GO:0016020 ! part of membrane [Term] id: GO:0098797 name: plasma membrane protein complex is_a: GO:0098796 ! membrane protein complex intersection_of: GO:0032991 ! protein-containing complex intersection_of: BFO:0000050 GO:0005886 ! part of plasma membrane relationship: BFO:0000050 GO:0005886 ! part of plasma membrane [Term] id: GO:0098801 name: regulation of renal system process is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0003014 ! regulates renal system process relationship: RO:0002211 GO:0003014 ! regulates renal system process [Term] id: GO:0098858 name: actin-based cell projection is_a: GO:0120025 ! plasma membrane bounded cell projection relationship: BFO:0000051 GO:0005884 ! has part actin filament [Term] id: GO:0099080 name: supramolecular complex is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0099081 name: supramolecular polymer is_a: GO:0099080 ! supramolecular complex [Term] id: GO:0099512 name: supramolecular fiber is_a: GO:0099081 ! supramolecular polymer [Term] id: GO:0099513 name: polymeric cytoskeletal fiber is_a: GO:0099512 ! supramolecular fiber relationship: BFO:0000050 GO:0005856 ! part of cytoskeleton [Term] id: GO:0099568 name: cytoplasmic region is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: BFO:0000050 GO:0005737 ! part of cytoplasm relationship: BFO:0000050 GO:0005737 ! part of cytoplasm [Term] id: GO:0099738 name: cell cortex region is_a: GO:0005938 ! cell cortex is_a: GO:0099568 ! cytoplasmic region intersection_of: GO:0005938 ! cell cortex intersection_of: BFO:0000050 GO:0005938 ! part of cell cortex relationship: BFO:0000050 GO:0005938 ! part of cell cortex [Term] id: GO:0110165 name: cellular anatomical entity is_a: GO:0005575 ! cellular_component [Term] id: GO:0120025 name: plasma membrane bounded cell projection is_a: GO:0042995 ! cell projection intersection_of: GO:0042995 ! cell projection intersection_of: BFO:0000051 GO:0098590 ! has part plasma membrane region relationship: BFO:0000051 GO:0098590 ! has part plasma membrane region property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/13193" xsd:anyURI [Term] id: GO:0120111 name: neuron projection cytoplasm is_a: GO:0032838 ! plasma membrane bounded cell projection cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: BFO:0000050 GO:0043005 ! part of neuron projection relationship: BFO:0000050 GO:0043005 ! part of neuron projection property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/14472" xsd:anyURI [Term] id: GO:0140352 name: export from cell is_a: GO:0006810 ! transport is_a: GO:0009987 ! cellular process [Term] id: GO:1901360 name: organic cyclic compound metabolic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:1901362 name: organic cyclic compound biosynthetic process is_a: GO:1901360 ! organic cyclic compound metabolic process is_a: GO:1901576 ! organic substance biosynthetic process [Term] id: GO:1901575 name: organic substance catabolic process is_a: GO:0009056 ! catabolic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:1901576 name: organic substance biosynthetic process is_a: GO:0009058 ! biosynthetic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:1901615 name: organic hydroxy compound metabolic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:1901617 name: organic hydroxy compound biosynthetic process is_a: GO:1901576 ! organic substance biosynthetic process is_a: GO:1901615 ! organic hydroxy compound metabolic process [Term] id: GO:1901700 name: response to oxygen-containing compound is_a: GO:0042221 ! response to chemical [Term] id: GO:1902074 name: response to salt is_a: GO:0042221 ! response to chemical [Term] id: GO:1902435 name: regulation of male mating behavior is_a: GO:0050795 ! regulation of behavior is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0060179 ! regulates male mating behavior relationship: RO:0002211 GO:0060179 ! regulates male mating behavior [Term] id: GO:1902436 name: negative regulation of male mating behavior is_a: GO:0048521 ! negative regulation of behavior is_a: GO:1902435 ! regulation of male mating behavior is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0060179 ! negatively regulates male mating behavior relationship: RO:0002212 GO:0060179 ! negatively regulates male mating behavior [Term] id: GO:1902437 name: positive regulation of male mating behavior is_a: GO:0048520 ! positive regulation of behavior is_a: GO:1902435 ! regulation of male mating behavior is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0060179 ! positively regulates male mating behavior relationship: RO:0002213 GO:0060179 ! positively regulates male mating behavior [Term] id: GO:1902584 name: positive regulation of response to water deprivation is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:2000070 ! regulation of response to water deprivation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0009414 ! positively regulates response to water deprivation relationship: RO:0002213 GO:0009414 ! positively regulates response to water deprivation [Term] id: GO:1903522 name: regulation of blood circulation is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0008015 ! regulates blood circulation relationship: RO:0002211 GO:0008015 ! regulates blood circulation [Term] id: GO:1903523 name: negative regulation of blood circulation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1903522 ! regulation of blood circulation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0008015 ! negatively regulates blood circulation relationship: RO:0002212 GO:0008015 ! negatively regulates blood circulation [Term] id: GO:1903524 name: positive regulation of blood circulation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1903522 ! regulation of blood circulation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0008015 ! positively regulates blood circulation relationship: RO:0002213 GO:0008015 ! positively regulates blood circulation [Term] id: GO:1903530 name: regulation of secretion by cell is_a: GO:0050794 ! regulation of cellular process is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0032940 ! regulates secretion by cell relationship: RO:0002211 GO:0032940 ! regulates secretion by cell [Term] id: GO:1903531 name: negative regulation of secretion by cell is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051048 ! negative regulation of secretion is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0032940 ! negatively regulates secretion by cell relationship: RO:0002212 GO:0032940 ! negatively regulates secretion by cell [Term] id: GO:1903532 name: positive regulation of secretion by cell is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051047 ! positive regulation of secretion is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0032940 ! positively regulates secretion by cell relationship: RO:0002213 GO:0032940 ! positively regulates secretion by cell [Term] id: GO:1903561 name: extracellular vesicle is_a: GO:0031982 ! vesicle is_a: GO:0065010 ! extracellular membrane-bounded organelle intersection_of: GO:0031982 ! vesicle intersection_of: BFO:0000050 GO:0005576 ! part of extracellular region [Term] id: GO:1903828 name: negative regulation of protein localization is_a: GO:0032880 ! regulation of protein localization is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0008104 ! negatively regulates protein localization relationship: RO:0002212 GO:0008104 ! negatively regulates protein localization property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22021" xsd:anyURI [Term] id: GO:1903829 name: positive regulation of protein localization is_a: GO:0032880 ! regulation of protein localization is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0008104 ! positively regulates protein localization relationship: RO:0002213 GO:0008104 ! positively regulates protein localization property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/22021" xsd:anyURI [Term] id: GO:1903941 name: negative regulation of respiratory gaseous exchange is_a: GO:0043576 ! regulation of respiratory gaseous exchange is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007585 ! negatively regulates respiratory gaseous exchange by respiratory system relationship: RO:0002212 GO:0007585 ! negatively regulates respiratory gaseous exchange by respiratory system [Term] id: GO:1903942 name: positive regulation of respiratory gaseous exchange is_a: GO:0043576 ! regulation of respiratory gaseous exchange is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007585 ! positively regulates respiratory gaseous exchange by respiratory system relationship: RO:0002213 GO:0007585 ! positively regulates respiratory gaseous exchange by respiratory system [Term] id: GO:1903998 name: regulation of eating behavior is_a: GO:0060259 ! regulation of feeding behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0042755 ! regulates eating behavior relationship: RO:0002211 GO:0042755 ! regulates eating behavior [Term] id: GO:1903999 name: negative regulation of eating behavior is_a: GO:1903998 ! regulation of eating behavior is_a: GO:2000252 ! negative regulation of feeding behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0042755 ! negatively regulates eating behavior relationship: RO:0002212 GO:0042755 ! negatively regulates eating behavior [Term] id: GO:1904000 name: positive regulation of eating behavior is_a: GO:1903998 ! regulation of eating behavior is_a: GO:2000253 ! positive regulation of feeding behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0042755 ! positively regulates eating behavior relationship: RO:0002213 GO:0042755 ! positively regulates eating behavior [Term] id: GO:1904057 name: negative regulation of sensory perception of pain is_a: GO:0031645 ! negative regulation of nervous system process is_a: GO:0051930 ! regulation of sensory perception of pain intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0019233 ! negatively regulates sensory perception of pain relationship: RO:0002212 GO:0019233 ! negatively regulates sensory perception of pain [Term] id: GO:1904058 name: positive regulation of sensory perception of pain is_a: GO:0031646 ! positive regulation of nervous system process is_a: GO:0051930 ! regulation of sensory perception of pain intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0019233 ! positively regulates sensory perception of pain relationship: RO:0002213 GO:0019233 ! positively regulates sensory perception of pain [Term] id: GO:1904251 name: regulation of bile acid metabolic process is_a: GO:0019218 ! regulation of steroid metabolic process is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0008206 ! regulates bile acid metabolic process relationship: RO:0002211 GO:0008206 ! regulates bile acid metabolic process [Term] id: GO:1904252 name: negative regulation of bile acid metabolic process is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0045939 ! negative regulation of steroid metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process is_a: GO:1904251 ! regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0008206 ! negatively regulates bile acid metabolic process relationship: RO:0002212 GO:0008206 ! negatively regulates bile acid metabolic process [Term] id: GO:1904253 name: positive regulation of bile acid metabolic process is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0045940 ! positive regulation of steroid metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process is_a: GO:1904251 ! regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0008206 ! positively regulates bile acid metabolic process relationship: RO:0002213 GO:0008206 ! positively regulates bile acid metabolic process [Term] id: GO:1904318 name: regulation of smooth muscle contraction involved in micturition is_a: GO:0006940 ! regulation of smooth muscle contraction is_a: GO:0044062 ! regulation of excretion is_a: GO:0098801 ! regulation of renal system process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0060083 ! regulates smooth muscle contraction involved in micturition relationship: RO:0002211 GO:0060083 ! regulates smooth muscle contraction involved in micturition [Term] id: GO:1904319 name: negative regulation of smooth muscle contraction involved in micturition is_a: GO:0045986 ! negative regulation of smooth muscle contraction is_a: GO:1904318 ! regulation of smooth muscle contraction involved in micturition intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0060083 ! negatively regulates smooth muscle contraction involved in micturition relationship: RO:0002212 GO:0060083 ! negatively regulates smooth muscle contraction involved in micturition [Term] id: GO:1904320 name: positive regulation of smooth muscle contraction involved in micturition is_a: GO:0045987 ! positive regulation of smooth muscle contraction is_a: GO:1904318 ! regulation of smooth muscle contraction involved in micturition intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0060083 ! positively regulates smooth muscle contraction involved in micturition relationship: RO:0002213 GO:0060083 ! positively regulates smooth muscle contraction involved in micturition [Term] id: GO:1904950 name: negative regulation of establishment of protein localization is_a: GO:0070201 ! regulation of establishment of protein localization is_a: GO:1903828 ! negative regulation of protein localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0045184 ! negatively regulates establishment of protein localization relationship: RO:0002212 GO:0045184 ! negatively regulates establishment of protein localization [Term] id: GO:1904951 name: positive regulation of establishment of protein localization is_a: GO:0070201 ! regulation of establishment of protein localization is_a: GO:1903829 ! positive regulation of protein localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0045184 ! positively regulates establishment of protein localization relationship: RO:0002213 GO:0045184 ! positively regulates establishment of protein localization [Term] id: GO:1905276 name: regulation of epithelial tube formation comment: An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). is_a: GO:1905330 ! regulation of morphogenesis of an epithelium is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0072175 ! regulates epithelial tube formation relationship: RO:0002211 GO:0072175 ! regulates epithelial tube formation [Term] id: GO:1905277 name: negative regulation of epithelial tube formation comment: An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905276 ! regulation of epithelial tube formation is_a: GO:1905331 ! negative regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0072175 ! negatively regulates epithelial tube formation relationship: RO:0002212 GO:0072175 ! negatively regulates epithelial tube formation [Term] id: GO:1905278 name: positive regulation of epithelial tube formation comment: An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905276 ! regulation of epithelial tube formation is_a: GO:1905332 ! positive regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0072175 ! positively regulates epithelial tube formation relationship: RO:0002213 GO:0072175 ! positively regulates epithelial tube formation [Term] id: GO:1905330 name: regulation of morphogenesis of an epithelium comment: An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0002009 ! regulates morphogenesis of an epithelium relationship: RO:0002211 GO:0002009 ! regulates morphogenesis of an epithelium [Term] id: GO:1905331 name: negative regulation of morphogenesis of an epithelium comment: An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1905330 ! regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0002009 ! negatively regulates morphogenesis of an epithelium relationship: RO:0002212 GO:0002009 ! negatively regulates morphogenesis of an epithelium [Term] id: GO:1905332 name: positive regulation of morphogenesis of an epithelium comment: An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferred from direct assay). is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1905330 ! regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0002009 ! positively regulates morphogenesis of an epithelium relationship: RO:0002213 GO:0002009 ! positively regulates morphogenesis of an epithelium [Term] id: GO:1905787 name: regulation of detection of mechanical stimulus involved in sensory perception of touch is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0051931 ! regulation of sensory perception intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0050976 ! regulates detection of mechanical stimulus involved in sensory perception of touch relationship: RO:0002211 GO:0050976 ! regulates detection of mechanical stimulus involved in sensory perception of touch [Term] id: GO:1905788 name: negative regulation of detection of mechanical stimulus involved in sensory perception of touch is_a: GO:0031645 ! negative regulation of nervous system process is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:1905787 ! regulation of detection of mechanical stimulus involved in sensory perception of touch intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0050976 ! negatively regulates detection of mechanical stimulus involved in sensory perception of touch relationship: RO:0002212 GO:0050976 ! negatively regulates detection of mechanical stimulus involved in sensory perception of touch [Term] id: GO:1905789 name: positive regulation of detection of mechanical stimulus involved in sensory perception of touch is_a: GO:0031646 ! positive regulation of nervous system process is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:1905787 ! regulation of detection of mechanical stimulus involved in sensory perception of touch intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0050976 ! positively regulates detection of mechanical stimulus involved in sensory perception of touch relationship: RO:0002213 GO:0050976 ! positively regulates detection of mechanical stimulus involved in sensory perception of touch [Term] id: GO:1905790 name: regulation of mechanosensory behavior is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007638 ! regulates mechanosensory behavior relationship: RO:0002211 GO:0007638 ! regulates mechanosensory behavior [Term] id: GO:1905791 name: negative regulation of mechanosensory behavior is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:0048521 ! negative regulation of behavior is_a: GO:1905790 ! regulation of mechanosensory behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007638 ! negatively regulates mechanosensory behavior relationship: RO:0002212 GO:0007638 ! negatively regulates mechanosensory behavior [Term] id: GO:1905792 name: positive regulation of mechanosensory behavior is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:0048520 ! positive regulation of behavior is_a: GO:1905790 ! regulation of mechanosensory behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007638 ! positively regulates mechanosensory behavior relationship: RO:0002213 GO:0007638 ! positively regulates mechanosensory behavior [Term] id: GO:1905902 name: regulation of mesoderm formation is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0001707 ! regulates mesoderm formation relationship: RO:0002211 GO:0001707 ! regulates mesoderm formation [Term] id: GO:1905903 name: negative regulation of mesoderm formation is_a: GO:1905902 ! regulation of mesoderm formation is_a: GO:2000381 ! negative regulation of mesoderm development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0001707 ! negatively regulates mesoderm formation relationship: RO:0002212 GO:0001707 ! negatively regulates mesoderm formation [Term] id: GO:1905904 name: positive regulation of mesoderm formation is_a: GO:1905902 ! regulation of mesoderm formation is_a: GO:2000382 ! positive regulation of mesoderm development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0001707 ! positively regulates mesoderm formation relationship: RO:0002213 GO:0001707 ! positively regulates mesoderm formation [Term] id: GO:1905952 name: regulation of lipid localization is_a: GO:0032879 ! regulation of localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0010876 ! regulates lipid localization relationship: RO:0002211 GO:0010876 ! regulates lipid localization [Term] id: GO:1905953 name: negative regulation of lipid localization is_a: GO:0048519 ! negative regulation of biological process is_a: GO:1905952 ! regulation of lipid localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0010876 ! negatively regulates lipid localization relationship: RO:0002212 GO:0010876 ! negatively regulates lipid localization [Term] id: GO:1905954 name: positive regulation of lipid localization is_a: GO:0048518 ! positive regulation of biological process is_a: GO:1905952 ! regulation of lipid localization intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0010876 ! positively regulates lipid localization relationship: RO:0002213 GO:0010876 ! positively regulates lipid localization [Term] id: GO:2000026 name: regulation of multicellular organismal development is_a: GO:0050793 ! regulation of developmental process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007275 ! regulates multicellular organism development relationship: RO:0002211 GO:0007275 ! regulates multicellular organism development [Term] id: GO:2000070 name: regulation of response to water deprivation is_a: GO:0080134 ! regulation of response to stress intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0009414 ! regulates response to water deprivation relationship: RO:0002211 GO:0009414 ! regulates response to water deprivation [Term] id: GO:2000145 name: regulation of cell motility is_a: GO:0040012 ! regulation of locomotion is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0048870 ! regulates cell motility relationship: RO:0002211 GO:0048870 ! regulates cell motility [Term] id: GO:2000146 name: negative regulation of cell motility is_a: GO:0040013 ! negative regulation of locomotion is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:2000145 ! regulation of cell motility intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0048870 ! negatively regulates cell motility relationship: RO:0002212 GO:0048870 ! negatively regulates cell motility [Term] id: GO:2000147 name: positive regulation of cell motility is_a: GO:0040017 ! positive regulation of locomotion is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:2000145 ! regulation of cell motility intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0048870 ! positively regulates cell motility relationship: RO:0002213 GO:0048870 ! positively regulates cell motility [Term] id: GO:2000241 name: regulation of reproductive process is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0022414 ! regulates reproductive process relationship: RO:0002211 GO:0022414 ! regulates reproductive process [Term] id: GO:2000242 name: negative regulation of reproductive process is_a: GO:0048519 ! negative regulation of biological process is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0022414 ! negatively regulates reproductive process relationship: RO:0002212 GO:0022414 ! negatively regulates reproductive process [Term] id: GO:2000243 name: positive regulation of reproductive process is_a: GO:0048518 ! positive regulation of biological process is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0022414 ! positively regulates reproductive process relationship: RO:0002213 GO:0022414 ! positively regulates reproductive process [Term] id: GO:2000252 name: negative regulation of feeding behavior is_a: GO:0048521 ! negative regulation of behavior is_a: GO:0060259 ! regulation of feeding behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007631 ! negatively regulates feeding behavior relationship: RO:0002212 GO:0007631 ! negatively regulates feeding behavior [Term] id: GO:2000253 name: positive regulation of feeding behavior is_a: GO:0048520 ! positive regulation of behavior is_a: GO:0060259 ! regulation of feeding behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007631 ! positively regulates feeding behavior relationship: RO:0002213 GO:0007631 ! positively regulates feeding behavior [Term] id: GO:2000292 name: regulation of defecation is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0044062 ! regulation of excretion intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0030421 ! regulates defecation relationship: RO:0002211 GO:0030421 ! regulates defecation [Term] id: GO:2000293 name: negative regulation of defecation is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0060457 ! negative regulation of digestive system process is_a: GO:2000292 ! regulation of defecation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0030421 ! negatively regulates defecation relationship: RO:0002212 GO:0030421 ! negatively regulates defecation [Term] id: GO:2000294 name: positive regulation of defecation is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0060456 ! positive regulation of digestive system process is_a: GO:2000292 ! regulation of defecation intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0030421 ! positively regulates defecation relationship: RO:0002213 GO:0030421 ! positively regulates defecation [Term] id: GO:2000380 name: regulation of mesoderm development is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007498 ! regulates mesoderm development relationship: RO:0002211 GO:0007498 ! regulates mesoderm development [Term] id: GO:2000381 name: negative regulation of mesoderm development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:2000380 ! regulation of mesoderm development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007498 ! negatively regulates mesoderm development relationship: RO:0002212 GO:0007498 ! negatively regulates mesoderm development [Term] id: GO:2000382 name: positive regulation of mesoderm development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:2000380 ! regulation of mesoderm development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007498 ! positively regulates mesoderm development relationship: RO:0002213 GO:0007498 ! positively regulates mesoderm development [Term] id: GO:2000383 name: regulation of ectoderm development is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007398 ! regulates ectoderm development relationship: RO:0002211 GO:0007398 ! regulates ectoderm development [Term] id: GO:2000384 name: negative regulation of ectoderm development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:2000383 ! regulation of ectoderm development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007398 ! negatively regulates ectoderm development relationship: RO:0002212 GO:0007398 ! negatively regulates ectoderm development [Term] id: GO:2000385 name: positive regulation of ectoderm development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:2000383 ! regulation of ectoderm development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007398 ! positively regulates ectoderm development relationship: RO:0002213 GO:0007398 ! positively regulates ectoderm development [Term] id: GO:2000542 name: negative regulation of gastrulation is_a: GO:0010470 ! regulation of gastrulation is_a: GO:0045992 ! negative regulation of embryonic development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002212 GO:0007369 ! negatively regulates gastrulation relationship: RO:0002212 GO:0007369 ! negatively regulates gastrulation [Term] id: GO:2000543 name: positive regulation of gastrulation is_a: GO:0010470 ! regulation of gastrulation is_a: GO:0040019 ! positive regulation of embryonic development intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002213 GO:0007369 ! positively regulates gastrulation relationship: RO:0002213 GO:0007369 ! positively regulates gastrulation [Term] id: GO:2000821 name: regulation of grooming behavior is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation intersection_of: RO:0002211 GO:0007625 ! regulates grooming behavior relationship: RO:0002211 GO:0007625 ! regulates grooming behavior [Term] id: NBO:0000001 name: body part movement namespace: behavior_ontology def: "A change of place or position of part of an organism that does not involve the entire organism [NBO:SMAC]" [] synonym: "stationary movement" EXACT [] is_a: NBO:0000338 ! kinesthetic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000002 name: whole body movement namespace: behavior_ontology is_a: NBO:0000338 ! kinesthetic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000003 name: emotional behavior namespace: behavior_ontology def: "Behavior related to the complex psychophysiological experience of an individual's state of mind as interacting with biochemical (internal) and environmental (external) influences." [] {source="wikipedia:Emotions"} synonym: "affective behaviour" EXACT [] synonym: "mood" EXACT [] is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000005 name: reflexive behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour related to involuntary movement in response to a stimulus." [] {source="NBO:GVG"} synonym: "pathological reflexive behaviour" EXACT [] is_a: NBO:0000643 ! involuntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:57:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000006 name: learning and/or memory behavior namespace: behavior_ontology def: "Behavior related to the acquisition and processing of information and/or the storage and retrieval of this information over time." [] {source="GO:jic"} synonym: "learning and/or memory behaviour" EXACT [] xref: GO:0007611 is_a: NBO:0000607 ! cognitive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000007 name: mouth movement namespace: behavior_ontology def: "The act of moving any of the tissues and hard structures surrounding the mouth other than teeth, jaws or filter structures [NBO:AC]" [] synonym: "mouth part movement" NARROW [] synonym: "other moved mouth parts" NARROW [] is_a: NBO:0000001 ! body part movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000008 name: rhythmic behavior namespace: behavior_ontology xref: GO:0007622 is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000009 name: locomotory behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior associated with the specific movement from place to place of an organism." [] {source="NBO:GVG"} synonym: "pathological locomotory behaviour" EXACT [] is_a: NBO:0000644 ! voluntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T12:58:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000010 name: reproductive behavior namespace: behavior_ontology def: "Behavior directly related to the production of offspring [NBO:AC]" [] synonym: "reproduction" EXACT [] synonym: "reproductive behaviour" EXACT [] xref: GO:0019098 is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000011 name: social behavior namespace: behavior_ontology def: "\"A behavior that occurs predominantly or only, in individuals that are part of a group.\" [Wikipedia:Social_behavior]" [] synonym: "social behaviour" EXACT [] xref: GO:0035176 is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000012 name: seizures/epilepsy namespace: behavior_ontology xref: HP:0001250 xref: MP:0002064 is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000013 name: locomotory behavior namespace: behavior_ontology def: "Movement from place to place of an organism.\" [GO:0007626]" [] synonym: "locomotion" EXACT [] xref: GO:0007626 xref: GO:0008344 is_a: GO:0040011 ! locomotion is_a: NBO:0000002 ! whole body movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000014 name: mating behavior namespace: behavior_ontology def: "Behavior related to the interactions between organisms for the purpose of mating." [] {source="NBO:GVG"} synonym: "mating behaviour" EXACT [] xref: GO:0007617 is_a: NBO:0000010 ! reproductive behavior disjoint_from: NBO:0000034 ! sexual activity property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000015 name: aggressive behavior namespace: behavior_ontology def: "A behavioral interaction between organisms in which one organism has the intention of inflicting damage on another individual using physical or verbal means." [] {source="wikipedia:Aggression"} synonym: "aggression" EXACT [] synonym: "aggressive behaviour" EXACT [] synonym: "agonism" EXACT [] xref: GO:0002118 is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000016 name: jumping behavior namespace: behavior_ontology def: "\"Behavior relate to the usually upward movement off the ground or other surface through sudden muscular effort in the legs.\" [GO:0007630]" [] synonym: "jump" EXACT [] xref: GO:0007630 is_a: NBO:0000359 ! terrestrial locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000017 name: biting namespace: behavior_ontology def: "The act of seizing with teeth or jaws an object or organism so as to grip or break the surface covering [NBO:AC]" [] synonym: "bite" EXACT [] is_a: NBO:0000747 ! jaw movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000018 name: fear/anxiety related behavior namespace: behavior_ontology def: "Emotional behavior related to fear or anxiety." [] {source="NBO:GVG"} synonym: "fear/anxiety related behaviour" EXACT [] is_a: NBO:0000003 ! emotional behavior is_a: NBO:0000469 ! stress related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000019 name: licking namespace: behavior_ontology def: "The act of stroking or touching with the tongue [NBO:AC]" [] synonym: "lick" EXACT [] is_a: NBO:0000748 ! tongue movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000020 name: head movement namespace: behavior_ontology def: "A change in place or position of the portion of the organism containing the brain, mouth and main sense organs [NBO:SMAC]" [] synonym: "move head" EXACT [] is_a: NBO:0000001 ! body part movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000022 name: learning behavior namespace: behavior_ontology def: "Behavior associated with any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience." [] {source="wikipedia:Learning"} synonym: "learning behaviour" EXACT [] xref: GO:0007612 is_a: NBO:0000006 ! learning and/or memory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000023 name: head shaking namespace: behavior_ontology def: "Movement of the head in the horizontal plane." [] {source="NBO:GVG"} synonym: "shake head" EXACT [] is_a: NBO:0000020 ! head movement is_a: NBO:0000068 ! shaking property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000024 name: sleeping behavior namespace: behavior_ontology def: "Behavior related to the readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals." [] {source="NBO:GVG"} xref: GO:0030431 is_a: GO:0030431 ! sleep is_a: NBO:0000008 ! rhythmic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000025 name: seizures namespace: behavior_ontology def: "An uncontrolled, paroxysmal neuronal discharge in any part of the brain; it may cause physical or mental symptoms and may be convulsive or nonconvulsive" [] {source="NBO:GVG"} synonym: "epileptic seizure" EXACT [] synonym: "unprovoked seizure" EXACT [] is_a: NBO:0000012 ! seizures/epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000026 name: head rotation namespace: behavior_ontology def: "The act of moving the head in a plane, circularly, pivoting at the neck [NBO:SMAC]" [] synonym: "rotate head" EXACT [] is_a: NBO:0000020 ! head movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000027 name: grooming behavior namespace: behavior_ontology def: "The act of using body parts to pick at, rub and or remove material from exterior covering, e.g., fur, scales, feathers, skin [NBO:SMAC]" [] synonym: "groom" EXACT [] synonym: "grooming behaviour" EXACT [] synonym: "hygiene" RELATED [] xref: GO:0007625 is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000028 name: akinesia namespace: behavior_ontology def: "Absence of voluntary movement." [] {source="NBO:GVG"} is_a: NBO:0000009 ! locomotory behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T12:59:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000029 name: bradykinesia namespace: behavior_ontology def: "Reduction of voluntary movement." [] {source="NBO:GVG"} synonym: "hypokinesia" EXACT [] is_a: NBO:0000009 ! locomotory behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000030 name: hyperactivity namespace: behavior_ontology def: "A kinesthetic behavior which relatively increased." [] {source="NBO:GVG"} xref: HP:0000752 xref: MP:0001399 is_a: NBO:0000644 ! voluntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:09:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000031 name: hypoactivity namespace: behavior_ontology def: "A kinesthetic behavior which relatively decreased." [] {source="NBO:GVG"} xref: MP:0001402 is_a: NBO:0000644 ! voluntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:09:41Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000032 name: paralysis namespace: behavior_ontology def: "\"Loss of power of voluntary movement in a muscle through injury or disease of its nerve supply.\" [JAX:]" [] xref: HP:0003470 xref: MP:0000753 is_a: NBO:0000009 ! locomotory behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:18:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000033 name: carpoptosis namespace: behavior_ontology def: "\"Paralysis of the extensors of the wrist and fingers.\" [JAX:]" [] comment: Carpoptosis is most often caused by a lesion of the radial nerve. xref: MP:0005162 is_a: NBO:0000032 ! paralysis property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:19:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000034 name: sexual activity namespace: behavior_ontology def: "Behaviour related to the activity which primary purpose is the sexual reproduction." [] {source="NBO:GVG"} synonym: "sexual actions" RELATED [] is_a: NBO:0000010 ! reproductive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000035 name: emission behavior namespace: behavior_ontology is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000036 name: behavioral control of production of sound namespace: behavior_ontology synonym: "produce sound" EXACT [] is_a: NBO:0000035 ! emission behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000037 name: vocalization behavior namespace: behavior_ontology def: "A behavior in which an organism produces sounds by a mechanism involving its respiratory system." [] {source="NBO:GVG"} synonym: "vocalization behaviour" EXACT [] synonym: "vocalize" EXACT [] is_a: NBO:0000036 ! behavioral control of production of sound property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000038 name: behavioral control of excretion namespace: behavior_ontology def: "The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds." [] {source="wikipedia:Excretion"} xref: GO:0007588 is_a: NBO:0000035 ! emission behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000039 name: behavioral control of defecation namespace: behavior_ontology def: "The behavioral control of defecation. [wikipedia:defecation]" [] is_a: NBO:0000038 ! behavioral control of excretion intersection_of: NBO:0000038 ! behavioral control of excretion intersection_of: is_about GO:0030421 ! defecation relationship: is_about GO:0030421 ! defecation property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000040 name: behavioral control of urination namespace: behavior_ontology def: "Excretion behaviour that controls liquid waste expulsion." [] {source="wikipedia:urination"} synonym: "micturition" EXACT [] synonym: "urinate" EXACT [] xref: GO:0060073 is_a: NBO:0000038 ! behavioral control of excretion intersection_of: NBO:0000038 ! behavioral control of excretion intersection_of: is_about GO:0060073 ! micturition relationship: is_about GO:0060073 ! micturition property_value: http://purl.org/dc/elements/1.1/contributor https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000041 name: behavioral control of external secretion namespace: behavior_ontology def: "Behavior associated with and resulting in the production and subsequent release of any substance or product elaborated, and released by a cell or gland [NBO:SMAC]" [] synonym: "secrete" EXACT [] is_a: NBO:0000035 ! emission behavior intersection_of: NBO:0000035 ! emission behavior intersection_of: is_about GO:0007589 ! body fluid secretion relationship: is_about GO:0007589 ! body fluid secretion property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000042 name: behavioral control of lacrimation namespace: behavior_ontology def: "The regulated release of the aqueous layer of the tear film from the lacrimal glands." [] {source="wikipedia:lacrimation"} synonym: "tear release" EXACT [] synonym: "tear secretion" EXACT [] is_a: NBO:0000041 ! behavioral control of external secretion intersection_of: NBO:0000041 ! behavioral control of external secretion intersection_of: by_means UBERON:0001817 ! lacrimal gland intersection_of: is_about GO:0070075 ! tear secretion relationship: by_means UBERON:0001817 ! lacrimal gland relationship: is_about GO:0070075 ! tear secretion property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000043 name: bonding behavior namespace: behavior_ontology def: "A behavior that occurs between two individuals, such as parent and child, and involves an emotional attachment that implies a special and focused relationship." [PMID:29327315] synonym: "forming of peer relationship" EXACT [] is_a: NBO:0000280 ! attraction-related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000044 name: parental behavior namespace: behavior_ontology def: "Behavior associated with protection, or assisting growth and development of young. [NBO:AC]" [] xref: GO:0060746 is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000045 name: brooding behavior namespace: behavior_ontology def: "Behavior that serves to regulate the temperature around offspring.[NBO:AC]" [] synonym: "thermoregulation of offspring" EXACT [] is_a: NBO:0000048 ! protection of offspring behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000047 name: weaning behavior namespace: behavior_ontology def: "Parental behavior that promotes the breaking of an offspring's dependence on parental resources." [ISBN:0674205065] comment: Especially food resources, and we know that many male birds provide offspring food. synonym: "weaning behaviour" EXACT [] is_a: NBO:0000044 ! parental behavior property_value: http://purl.org/dc/elements/1.1/contributor https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string property_value: source "Immelmann K, Beer C. A dictionary of ethology. Harvard University Press; 1989." xsd:string created_by: George Gkoutos [Term] id: NBO:0000048 name: protection of offspring behavior namespace: behavior_ontology def: "Behavior related the protection of offspring." [] {source="NBO:SD"} synonym: "protection of offspring" EXACT [] is_a: NBO:0000044 ! parental behavior is_a: NBO:0000636 ! protective behavior disjoint_from: NBO:0000087 ! antipredation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000049 name: social play namespace: behavior_ontology alt_id: NBO:0000625 def: "\"Play behavior that is associated with the socialization of an individual into the group.\" [web:http\\://www.bio.davidson.edu/people/vecase/behavior/Spring2009/Sacco/Pages/Play%20Fighting.html]" [] synonym: "social playing behaviour" EXACT [] is_a: NBO:0000011 ! social behavior is_a: NBO:0000075 ! playing behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000051 name: thermoregulation behavior namespace: behavior_ontology def: "Behavior related to the actions by which an organism modulates its internal body temperature." [] {source="NBO:GVG"} is_a: NBO:0000233 ! motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000052 name: huddling behavior namespace: behavior_ontology def: "Behavior associated with two or more individuals' achieving or maintaining close and extensive bodily contact; to nestle closely with another [NBO:AC]" [] synonym: "huddle" EXACT [] is_a: NBO:0000051 ! thermoregulation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000053 name: basking behavior namespace: behavior_ontology def: "Exposure of body to sunlight, either by modification of body posture, by movement to specific areas or both [NBO:SMAC]" [] synonym: "basking" EXACT [] synonym: "sunning" EXACT [] synonym: "sunning behavior" EXACT [] is_a: NBO:0000051 ! thermoregulation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000054 name: suckling behavior namespace: behavior_ontology alt_id: NBO:0000046 def: "Specific actions of a newborn or infant mammal that result in the derivation of nourishment from the breast." [] {source="GOC:dph"} synonym: "nursing behaviour" EXACT [] synonym: "suckling behaviour" EXACT [] xref: GO:0001967 is_a: NBO:0000079 ! feeding behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000055 name: running behavior namespace: behavior_ontology def: "The act of locomoting on limbs with body off the ground such that periodically none of the limbs are touching the ground [NBO:SMAC]" [] synonym: "run" EXACT [] is_a: NBO:0000359 ! terrestrial locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000056 name: walking behavior namespace: behavior_ontology def: "The act of locomoting on limbs with body off the ground such that at least one limb is always touching the ground [NBO:AC]" [] synonym: "walking" EXACT [] xref: GO:0007628 is_a: NBO:0000359 ! terrestrial locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000057 name: scratching namespace: behavior_ontology def: "The act of dragging claws or nails over a surface [NBO:AC]" [] synonym: "scratch" EXACT [] synonym: "scratching behavior" EXACT [] is_a: NBO:0000027 ! grooming behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000059 name: nuzzling namespace: behavior_ontology is_a: NBO:0000280 ! attraction-related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000060 name: copulation namespace: behavior_ontology def: "Male's insertion of sperm-transfer organ into the body of the female [NBO:SMAC]" [] synonym: "copulate" EXACT [] is_a: NBO:0000034 ! sexual activity disjoint_from: NBO:0000548 ! male sexual activity property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:03:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000061 name: forelimb paralysis namespace: behavior_ontology def: "Loss of power of voluntary movement in muscles of the forelimb through injury or disease of it or its nerve supply." [] {source="JAX:"} xref: MP:0000756 is_a: NBO:0000032 ! paralysis property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000062 name: bathing behavior namespace: behavior_ontology def: "Behavior related to the washing or cleansing of the body in a fluid, usually water or an aqueous solution." [] {source="wikipedia:Bathing"} synonym: "bathe" EXACT [] synonym: "bathing behaviour" EXACT [] is_a: NBO:0000027 ! grooming behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000063 name: regulation of eating behavior namespace: behavior_ontology def: "A feeding behavior associated with the intake or the frequency of intake or preference or manner of intake of food." [] {source="NBO:GVG"} synonym: "eating behaviour" EXACT [] xref: GO:0042755 is_a: NBO:0002436 ! regulation of feeding behavior relationship: RO:0002211 NBO:0000134 ! regulates food consumption property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000064 name: regulation of drinking behavior namespace: behavior_ontology def: "A feeding behavior associated with the intake or the frequency of intake or preference or manner of intake of liquids." [] {source="NBO:GVG"} synonym: "drinking behaviour" EXACT [] xref: GO:0042756 is_a: NBO:0002436 ! regulation of feeding behavior relationship: RO:0002211 NBO:0000130 ! regulates liquid consumption property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000065 name: consciousness behavior namespace: behavior_ontology def: "Behavior related to a variety of aspects of the relationship between the mind and the world with which it interacts." [] {source="wikipedia:Consciousness"} is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000066 name: wakefulness namespace: behavior_ontology def: "\"Behavior related to the state of being conscious and engages in a coherent cognitive and behavior responses to the external world.\" [NBO:SD, wikipedia:Wakefulness]" [] is_a: NBO:0000649 ! being conscious property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000067 name: asleep namespace: behavior_ontology def: "Behavior related to reduced or absent consciousness, relatively suspended sensory activity, and inactivity of nearly all voluntary muscles." [] {source="wikipedia:Asleep"} is_a: NBO:0000419 ! sleeping behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000068 name: shaking namespace: behavior_ontology def: "Repetitive movement of a body part." [] {source="NBO:GVG"} is_a: NBO:0000001 ! body part movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000069 name: swaying namespace: behavior_ontology is_a: NBO:0000002 ! whole body movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000070 name: tilting namespace: behavior_ontology is_a: NBO:0000002 ! whole body movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000071 name: fossorial locomotion behavior namespace: behavior_ontology def: "Behavior related to the movement facilitated by the generation of hole or tunnel dug into the ground." [] {source="NBO:GVG"} synonym: "burrowing" EXACT [] synonym: "burrowing behaviour" EXACT [] is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000073 name: chewing namespace: behavior_ontology def: "The act of repeated grinding, tearing, and or crushing with teeth or jaws [NBO:SMAC]" [] synonym: "chew" EXACT [] synonym: "gnaw" EXACT [] synonym: "mastication" EXACT [] is_a: NBO:0000747 ! jaw movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000074 name: yawning namespace: behavior_ontology is_a: NBO:0000747 ! jaw movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000075 name: playing behavior namespace: behavior_ontology def: "A very broad category including the partial or complete performance of adult functional behaviors in non-functional contexts, as well as interactive behaviors peculiar to immature animals [NBO:AC]" [] synonym: "play" EXACT [] is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000076 name: locomotor play namespace: behavior_ontology def: "Undirected behavior involving exercise and coordination, and often associated with repetition and 'practice' of adult behavior patterns in a non-functional context [NBO:AC]" [] comment: Many different actions are included in locomotor play. Some of the actions include a vertical leap, running in circles, chasing an animals own tail, lolloping, bouncing, bucking, rolling, whirling, dangling, spinning, back flips, hand stands, somersaults, and hanging upside down. The vertical leap is seen in mammals like in primates, hares, and mice. Along with running and bouncing, the vertical leap is important for strengthening leg muscles for self defense, escaping, or chasing. Activities like dangling and hanging upside down are important for improving climbing ability. These many different examples of locomotor play are important in strengthening muscles and improving motor skills. By participating in locomotor play, individuals will be able to improve skills like fighting, hunting, fleeing, and climbing. synonym: "exercise" EXACT [] synonym: "motor development playing behaviour" EXACT [] synonym: "motor play" EXACT [] is_a: NBO:0000075 ! playing behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000077 name: courtship behavior namespace: behavior_ontology def: "The behavioral interactions between organisms for the purpose of attracting sexual partners." [] {source="GOC:dph"} synonym: "courtship" EXACT [] synonym: "courtship behaviour" EXACT [] xref: GO:0007619 is_a: NBO:0000014 ! mating behavior disjoint_from: NBO:0000146 ! mating receptivity property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000078 name: post-mating behavior namespace: behavior_ontology alt_id: NBO:0000325 def: "Behavior related to the specific actions or reactions of an organism following mating." [] {source="GOC:bf"} synonym: "post mating behaviour" EXACT [] synonym: "post-copulatory behavior" EXACT [] synonym: "post-mating behaviour" EXACT [] xref: GO:0045297 is_a: NBO:0000010 ! reproductive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000079 name: feeding behavior namespace: behavior_ontology def: "The act of bringing an object or substance into the body by swallowing, surrounding or absorbing it [NBO:SMAC]" [] synonym: "feeding behaviour" EXACT [] xref: GO:0007631 is_a: NBO:0001845 ! consumption behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000080 name: sitting down namespace: behavior_ontology def: "The act of moving the body core lower, closer to the ground [NOB:SMAC]" [] synonym: "sit down" EXACT [] is_a: NBO:0000002 ! whole body movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000081 name: standing up namespace: behavior_ontology def: "The act of moving the body core higher, away from the ground [NBO:SMAC]" [] synonym: "stand up" EXACT [] is_a: NBO:0000002 ! whole body movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000082 name: writhing namespace: behavior_ontology synonym: "writhe" EXACT [] is_a: NBO:0000002 ! whole body movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000084 name: circadian behavior namespace: behavior_ontology def: "Behavior related to any biological process in an organism that recurs with a regularity of approximately 24 hours." [] {source="NBO:GVG"} xref: GO:0048512 is_a: GO:0007622 ! rhythmic behavior is_a: NBO:0000008 ! rhythmic behavior intersection_of: GO:0007622 ! rhythmic behavior intersection_of: is_about GO:0007623 ! circadian rhythm relationship: is_about GO:0007623 ! circadian rhythm property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000085 name: depression behavior namespace: behavior_ontology def: "Emotional behavior related to a state of low mood and aversion to activity." [] {source="wikipedia:Depression"} synonym: "depression related behaviour" EXACT [] is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000086 name: novelty response behavior namespace: behavior_ontology def: "Behavior related to the exploration/investigation of a novel object, situation or environment." [] {source="NBO:GVG"} is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000087 name: antipredation behavior namespace: behavior_ontology def: "Behavior related to defence against predation or predators." [] {source="NBO:GVG"} synonym: "antipredator behavior" EXACT [] is_a: NBO:0000636 ! protective behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000088 name: acute stress response namespace: behavior_ontology def: "Behavior related to the preparation of the body to \\\"fight\\\" or \\\"flee\\\" from perceived attack, harm or threat." [] {source="NBO:GVG"} synonym: "fight-or-flight response" EXACT [] synonym: "fight-or-flight-or-freeze response" EXACT [] is_a: NBO:0000087 ! antipredation behavior is_a: NBO:0000470 ! behavioral alarm property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000089 name: predator behavior namespace: behavior_ontology def: "A physical aggression behavior involving attack on prey by a predator." [] {source="NBO:GVG"} synonym: "predatory aggression" EXACT [] synonym: "predatory aggressive behaviour" EXACT [] xref: GO:0002120 is_a: NBO:0000120 ! physical aggression behavior is_a: NBO:0000235 ! hunger motivation behavior disjoint_from: NBO:0000237 ! hunger regulation property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000090 name: threatening predator behavior namespace: behavior_ontology def: "Behavior directed at a predator that signifies hostility and predicts an increased probability of attack [NBO:SMAC]" [] synonym: "threaten predator" EXACT [] is_a: NBO:0000087 ! antipredation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000091 name: fear-related behavior namespace: behavior_ontology def: "An emotional behavior related to a feeling of uneasiness or nervousness triggered by a specified triggering stimulus such as pain or the threat of danger." [] {source="NBO:GVG"} synonym: "fear-related behaviour" EXACT [] is_a: NBO:0000018 ! fear/anxiety related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:00:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000092 name: anxiety-related behavior namespace: behavior_ontology def: "An emotional behavior related to a feeling of uneasiness or nervousness triggered by an identifiable triggering stimulus." [] {source="NBO:GVG"} synonym: "anxiety-related behaviour" EXACT [] is_a: NBO:0000018 ! fear/anxiety related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:01:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000093 name: fear behavior towards objects namespace: behavior_ontology def: "An emotional behavior related to a feeling of uneasiness or nervousness in respect to an object." [] {source="NBO:GVG"} is_a: NBO:0000091 ! fear-related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:16:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000094 name: fear behavior towards situation/environment namespace: behavior_ontology def: "An emotional behavior related to a feeling of uneasiness or nervousness in respect to a particular situation or environment." [] {source="NBO:GVG"} is_a: NBO:0000091 ! fear-related behavior is_a: NBO:0000100 ! exploration behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:18:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000095 name: fear behavior towards living things namespace: behavior_ontology def: "An emotional behavior related to a feeling of uneasiness or nervousness in respect to a living thing." [] {source="NBO:GVG"} is_a: NBO:0000091 ! fear-related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:18:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000096 name: agoraphobia behavior namespace: behavior_ontology def: "A phobia characterised by fear of open spaces." [] {source="NBO:GVG"} xref: HP:0000756 is_a: NBO:0000246 ! phobia property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:18:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000097 name: response to novel environment namespace: behavior_ontology def: "Behavior related to the exploration/investigation of a novel environment." [] {source="NBO:GVG"} is_a: NBO:0000086 ! novelty response behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:22:03Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000098 name: response to novel object namespace: behavior_ontology def: "Behavior related to the exploration/investigation of a novel obhject." [] {source="NBO:GVG"} is_a: NBO:0000086 ! novelty response behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:23:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000099 name: response to novel odor namespace: behavior_ontology def: "Behavior related to the exploration/investigation of a novel odor." [] {source="NBO:GVG"} is_a: NBO:0000086 ! novelty response behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:24:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000100 name: exploration behavior namespace: behavior_ontology xref: GO:0035640 is_a: NBO:0000097 ! response to novel environment property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:28:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000101 name: retropulsion namespace: behavior_ontology def: "Moving backwards." [] {source="NBO:GVG"} is_a: NBO:0000056 ! walking behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:32:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000102 name: fear-related retropulsion namespace: behavior_ontology def: "Moving backwards in response to a fear stimulus." [] {source="NBO:GVG"} is_a: NBO:0000091 ! fear-related behavior is_a: NBO:0000100 ! exploration behavior is_a: NBO:0000101 ! retropulsion property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:36:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000103 name: coping behavior namespace: behavior_ontology def: "Behavioral response to the presidency of the stressor where it becomes necessary to attempt some means of coping with the stress." [] {source="NBO:GVG"} is_a: NBO:0000469 ! stress related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:49:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000104 name: aggressive behavior towards humans namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards humans." [] {source="NBO:GVG"} synonym: "aggressive behavior towards humans" EXACT [] is_a: NBO:0000105 ! aggressive behavior towards animals property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:50:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000105 name: aggressive behavior towards animals namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards animals." [] {source="NBO:GVG"} synonym: "aggressive behavior towards animals" EXACT [] is_a: NBO:0000740 ! aggressive behavior by intent property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:51:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000106 name: aggressive behavior towards objects namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action toward any type of object." [] {source="NBO:GVG"} synonym: "aggressive behavior towards objects" EXACT [] is_a: NBO:0000740 ! aggressive behavior by intent property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:51:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000107 name: aggressive behavior towards mice namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards mice." [] {source="NBO:GVG"} synonym: "aggressive behavior towards mice" EXACT [] is_a: NBO:0000105 ! aggressive behavior towards animals property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:51:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000108 name: aggressive behavior towards women namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards women." [] {source="NBO:GVG"} synonym: "aggressive behavior towards women" EXACT [] is_a: NBO:0000104 ! aggressive behavior towards humans is_a: NBO:0000117 ! aggressive behavior towards females property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:52:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000109 name: aggressive behavior towards men namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards men." [] {source="NBO:GVG"} synonym: "aggressive behavior towards men" EXACT [] is_a: NBO:0000104 ! aggressive behavior towards humans is_a: NBO:0000118 ! aggressive behavior towards males property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:52:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000110 name: aggressive behavior towards male mice namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards male mice." [] {source="NBO:GVG"} synonym: "aggressive behavior towards male mice" EXACT [] is_a: NBO:0000107 ! aggressive behavior towards mice is_a: NBO:0000118 ! aggressive behavior towards males property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:52:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000111 name: aggressive behavior towards female mice namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards female mice." [] {source="NBO:GVG"} synonym: "aggressive behavior towards female mice" EXACT [] is_a: NBO:0000107 ! aggressive behavior towards mice is_a: NBO:0000117 ! aggressive behavior towards females property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:53:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000112 name: aggressive behavior towards inanimate objects namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action toward inanimate objects." [] {source="NBO:GVG"} synonym: "aggressive behavior towards inanimate objects" EXACT [] is_a: NBO:0000106 ! aggressive behavior towards objects property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:53:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000113 name: aggressive behavior towards animate objects namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action toward animate objects." [] {http://purl.org/dc/elements/1.1/contributor="https://orcid.org/0000-0002-4277-2151"} synonym: "aggressive behavior towards animate objects" EXACT [] is_a: NBO:0000106 ! aggressive behavior towards objects property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:53:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000114 name: aggressive behavior towards children namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards children." [] {source="NBO:GVG"} synonym: "aggressive behavior towards children" EXACT [] is_a: NBO:0000104 ! aggressive behavior towards humans property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:57:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000115 name: aggressive behavior towards pups namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards pups." [] {source="NBO:GVG"} synonym: "aggressive behavior towards pups" EXACT [] is_a: NBO:0000107 ! aggressive behavior towards mice property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T10:58:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000116 name: gender-related aggressive behavior namespace: behavior_ontology def: "Gender related exhibition of a domineering, assault posture and/or hostile physical action." [] {source="NBO:GVG"} synonym: "gender-related aggressive behaviour" EXACT [] is_a: NBO:0000105 ! aggressive behavior towards animals property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:02:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000117 name: aggressive behavior towards females namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards female animals." [] {source="NBO:GVG"} is_a: NBO:0000116 ! gender-related aggressive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:03:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000118 name: aggressive behavior towards males namespace: behavior_ontology def: "Exhibiting a domineering, assault posture and/or hostile physical action towards male animals." [] {source="NBO:GVG"} synonym: "aggressive behavior towards males" EXACT [] is_a: NBO:0000116 ! gender-related aggressive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:04:03Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000119 name: impulsive behavior namespace: behavior_ontology def: "A behavior that occur quickly without control, planning, or consideration of the consequences of that behavior." [] {source="NBO:GVG"} is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:08:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000120 name: physical aggression behavior namespace: behavior_ontology def: "An aggressive behavior that aims to inflicting damage on another entity using physical means." [] {source="NBO:GVG"} synonym: "physical aggression behaviour" EXACT [] synonym: "violent behaviour" EXACT [] is_a: NBO:0000741 ! aggressive behavior by means property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:14:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000121 name: agonistic behavior namespace: behavior_ontology synonym: "agonism" EXACT [] is_a: NBO:0000003 ! emotional behavior is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:42:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000122 name: submissive behavior namespace: behavior_ontology def: "Any behavior that tends to prevent further or future attack, often by signalling a willingness to yield or surrender [NBO:AC]" [] synonym: "submissive behaviour" EXACT [] is_a: NBO:0000121 ! agonistic behavior disjoint_from: NBO:0000127 ! retreat behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:43:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000123 name: submissive behavior towards males namespace: behavior_ontology def: "A behavior associated with the tendency of an organism towards being passive and willing to yield to male animals." [] {source="NBO:GVG"} synonym: "submissive behavior towards males" EXACT [] is_a: NBO:0000122 ! submissive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:43:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000124 name: submissive behavior towards females namespace: behavior_ontology def: "A behavior associated with the tendency of an organism towards being passive and willing to yield to female animals." [] {source="NBO:GVG"} synonym: "submissive behavior towards females" EXACT [] is_a: NBO:0000122 ! submissive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:44:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000125 name: submissive behavior towards male mice namespace: behavior_ontology def: "A behavior associated with the tendency of an organism towards being passive and willing to yield towards male mice." [] {source="NBO:GVG"} synonym: "submissive behavior towards male mice" EXACT [] is_a: NBO:0000123 ! submissive behavior towards males property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:44:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000126 name: subordination behavior namespace: behavior_ontology is_a: NBO:0000122 ! submissive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:47:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000127 name: retreat behavior namespace: behavior_ontology def: "Behavior by which an animal removes itself spatially from an agonistic encounter in which it is not the winner [NBO:AC]" [] synonym: "retreat" EXACT [] synonym: "retreat behaviour" EXACT [] is_a: NBO:0000121 ! agonistic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T11:49:03Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000128 name: irritability behavior namespace: behavior_ontology def: "Behavior characterized by a quick excitability to annoyance, impatience, or anger." [] {source="NBO:GVG"} is_a: NBO:0000121 ! agonistic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:16:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000129 name: agitation behavior namespace: behavior_ontology def: "Emotional behavior related to excitement or restlessness." [] {source="NBO:GVG"} is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:22:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000130 name: liquid consumption namespace: behavior_ontology def: "A behavior associated with the intake of liquid." [] {source="NBO:GVG"} is_a: NBO:0000079 ! feeding behavior relationship: has_participant PATO:0001548 ! quality of a liquid property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:40:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000131 name: alcohol consumption namespace: behavior_ontology def: "A drinking behavior associated with the intake of alcohol." [] {source="NBO:GVG"} is_a: NBO:0000130 ! liquid consumption intersection_of: NBO:0000130 ! liquid consumption intersection_of: has_participant CHEBI:16236 ! ethanol relationship: has_participant CHEBI:16236 ! ethanol property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:40:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000132 name: water consumption namespace: behavior_ontology def: "A drinking behavior associated with the intake of water." [] {source="NBO:GVG"} xref: GO:0045187 is_a: NBO:0000130 ! liquid consumption intersection_of: NBO:0000130 ! liquid consumption intersection_of: has_participant CHEBI:15377 ! water relationship: has_participant CHEBI:15377 ! water property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:41:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000133 name: liquid preference/aversion namespace: behavior_ontology is_a: NBO:0000540 ! drinking behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:41:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000134 name: food consumption namespace: behavior_ontology def: "A feeding behavior associated with the intake of food." [] {source="NBO:GVG"} is_a: NBO:0000079 ! feeding behavior intersection_of: NBO:0000079 ! feeding behavior intersection_of: has_participant CHEBI:33290 ! food relationship: has_participant CHEBI:33290 ! food property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:42:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000135 name: food preference/aversion namespace: behavior_ontology is_a: NBO:0000539 ! eating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:43:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000136 name: saccharin consumption namespace: behavior_ontology def: "A feeding behavior associated with the intake of saccharin." [] {source="NBO:GVG"} is_a: NBO:0000134 ! food consumption intersection_of: NBO:0000134 ! food consumption intersection_of: has_participant CHEBI:32111 ! saccharin relationship: has_participant CHEBI:32111 ! saccharin property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:50:41Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000137 name: liquid preference namespace: behavior_ontology def: "Predilection to ingest a liquid over other substances." [] {source="NBOC:GVG"} is_a: NBO:0000133 ! liquid preference/aversion property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:55:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000138 name: liquid aversion namespace: behavior_ontology def: "Purposeful avoidance of a liquid due to dislike." [] {source="NBO:GVG"} is_a: NBO:0000133 ! liquid preference/aversion property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:55:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000139 name: alcohol aversion namespace: behavior_ontology def: "Purposeful avoidance of liquid alcohol due to dislike. [NBO:LKSR]" [] {source="NBO:GVG"} is_a: NBO:0000138 ! liquid aversion property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:55:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000140 name: alcohol preference namespace: behavior_ontology def: "Predilection to ingest alcohol over other substances." [] {source="NBOC:GVG"} is_a: NBO:0000137 ! liquid preference property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:56:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000141 name: food preference namespace: behavior_ontology is_a: NBO:0000135 ! food preference/aversion property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:58:43Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000142 name: food aversion namespace: behavior_ontology is_a: NBO:0000135 ! food preference/aversion property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:59:08Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000143 name: saccharin preference namespace: behavior_ontology is_a: NBO:0000141 ! food preference property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T12:59:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000144 name: mating frequency namespace: behavior_ontology is_a: NBO:0000756 ! mating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:16:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000145 name: mating preference namespace: behavior_ontology synonym: "mate choice" EXACT [] is_a: NBO:0000756 ! mating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:17:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000146 name: mating receptivity namespace: behavior_ontology is_a: NBO:0000014 ! mating behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:17:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000147 name: sexual display behavior namespace: behavior_ontology synonym: "mate attraction behavior" NARROW [] is_a: NBO:0000014 ! mating behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:21:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000148 name: social investigation namespace: behavior_ontology is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:24:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000149 name: reclusive behavior namespace: behavior_ontology is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:25:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000150 name: maternal behavior namespace: behavior_ontology def: "Behavior of a mother towards her offspring." [] {source="NBO:GVG"} xref: GO:0042711 is_a: NBO:0000044 ! parental behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:32:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000151 name: paternal behavior namespace: behavior_ontology def: "Behavior of a father towards his offspring." [] {source="NBO:GVG"} xref: GO:0042712 is_a: NBO:0000044 ! parental behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:32:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000152 name: maternal nurturing behavior namespace: behavior_ontology def: "Maternal behavior related to the brining up her offspring." [] {source="NBO:GVG"} is_a: NBO:0000150 ! maternal behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:33:34Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000153 name: paternal nurturing behavior namespace: behavior_ontology def: "Paternal behavior related to the brining up his offspring." [] {source="NBO:GVG"} is_a: NBO:0000151 ! paternal behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:33:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000154 name: maternal crouching namespace: behavior_ontology is_a: NBO:0000152 ! maternal nurturing behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:35:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000155 name: offspring retrieval namespace: behavior_ontology def: "Behavior related to the parent's tendency to collect stray offspring and return them to a defined location." [] {source="NBO:GVG"} synonym: "retrieval" EXACT [] is_a: NBO:0000048 ! protection of offspring behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:42:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000156 name: nesting behavior namespace: behavior_ontology is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:53:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000157 name: nest building behavior namespace: behavior_ontology is_a: NBO:0000156 ! nesting behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:54:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000158 name: sleep pattern namespace: behavior_ontology is_a: NBO:0000419 ! sleeping behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T02:59:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000159 name: rapid eye movement sleep namespace: behavior_ontology synonym: "paradoxical sleep" EXACT [] synonym: "REM sleep" EXACT [] is_a: GO:0042747 ! circadian sleep/wake cycle, REM sleep is_a: GO:0050802 ! circadian sleep/wake cycle, sleep is_a: NBO:0000024 ! sleeping behavior is_a: NBO:0000084 ! circadian behavior intersection_of: NBO:0000024 ! sleeping behavior intersection_of: is_about GO:0042747 ! circadian sleep/wake cycle, REM sleep relationship: is_about GO:0042747 ! circadian sleep/wake cycle, REM sleep property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:00:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000160 name: sleep duration namespace: behavior_ontology is_a: NBO:0000419 ! sleeping behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:09:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000161 name: non-rapid eye movement sleep behavior namespace: behavior_ontology def: "Behavior related to all sleep stages in the circadian sleep/wake cycle other than REM sleep." [] {source="NBO:GVG"} comment: These stages are characterized by a slowing of brain waves and other physiological functions. synonym: "NREM sleep behavior" EXACT [] is_a: GO:0042748 ! circadian sleep/wake cycle, non-REM sleep is_a: GO:0050802 ! circadian sleep/wake cycle, sleep is_a: NBO:0000024 ! sleeping behavior is_a: NBO:0000084 ! circadian behavior relationship: is_about GO:0042748 ! circadian sleep/wake cycle, non-REM sleep property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:12:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000162 name: REM duration namespace: behavior_ontology def: "Duration of REM sleep." [] {source="NBO:GVG"} is_a: NBO:0000754 ! rapid eye movement sleep phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:15:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000163 name: REM frequency namespace: behavior_ontology is_a: NBO:0000754 ! rapid eye movement sleep phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:15:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000164 name: NREM duration namespace: behavior_ontology def: "Duration of NREM sleep." [] {http://purl.org/dc/elements/1.1/contributor="https://orcid.org/0000-0002-4277-2151"} is_a: NBO:0000160 ! sleep duration is_a: NBO:0000753 ! non-rapid eye movement sleep behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:16:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000165 name: NREM frequency namespace: behavior_ontology is_a: NBO:0000753 ! non-rapid eye movement sleep behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:16:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000166 name: circadian rhythm namespace: behavior_ontology def: "Endogenously driven roughly 24-hour cycle in biochemical, physiological, or behavioral processes." [] {source="GOC:bf"} xref: GO:0007623 is_a: NBO:0000084 ! circadian behavior property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:22:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000167 name: circadian period namespace: behavior_ontology is_a: NBO:0000166 ! circadian rhythm property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:23:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000168 name: circadian persistence namespace: behavior_ontology is_a: NBO:0000166 ! circadian rhythm property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:23:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000169 name: circadian phase namespace: behavior_ontology is_a: NBO:0000166 ! circadian rhythm property_value: http://purl.org/dc/elements/1.1/date "2011-03-31T03:24:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000170 name: memory behavior namespace: behavior_ontology def: "Behavior related with the ability of an organism's ability to store, retain, and recall information and experiences." [] {source="NBO:GVG"} synonym: "memory behaviour" EXACT [] xref: GO:0007613 is_a: NBO:0000006 ! learning and/or memory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T01:49:03Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000171 name: associative learning behavior namespace: behavior_ontology def: "\"Learning by associating a stimulus (the cause) with a particular outcome (the effect).\" [Wikipedia:Learning#Associative_learning]" [] comment: The formation of associations among stimuli and responses. synonym: "conditional learning" EXACT [] xref: GO:0008306 is_a: NBO:0000011 ! social behavior is_a: NBO:0000022 ! learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T01:49:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000172 name: olfactory learning behavior namespace: behavior_ontology xref: GO:0008355 is_a: NBO:0000323 ! olfactory behavior is_a: NBO:0000641 ! discrimination learning property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T01:54:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000173 name: visual learning behavior namespace: behavior_ontology xref: GO:0008542 is_a: NBO:0000314 ! visual behavior is_a: NBO:0000641 ! discrimination learning property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T01:54:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000174 name: motor learning namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior intersection_of: NBO:0000171 ! associative learning behavior intersection_of: is_about NBO:0000339 ! motor coordination relationship: is_about NBO:0000339 ! motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T01:56:08Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000175 name: spatial learning namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T01:57:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000176 name: vocal learning namespace: behavior_ontology def: "\"A behavioral process whose outcome is a relatively long-lasting adaptive behavioral change whereby an organism modifies innate vocalizations to imitate or create new sounds.\" [GO:0042297]" [] xref: GO:0042297 is_a: NBO:0000171 ! associative learning behavior intersection_of: NBO:0000171 ! associative learning behavior intersection_of: is_about NBO:0000037 ! vocalization behavior relationship: is_about NBO:0000037 ! vocalization behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T01:58:41Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000177 name: non-associative learning namespace: behavior_ontology def: "A decrease in a behavioral response to a repeated stimulus." [] {source="NBO:GVG"} synonym: "nonassociative learning" EXACT [] synonym: "unconditional response" EXACT [] xref: GO:0046958 is_a: NBO:0000022 ! learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T03:18:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000178 name: habituation namespace: behavior_ontology def: "Gradual decrease in behavioral responses with repeated encounters of a particular stimulus, which proves of no consequence." [] {source="wikipedia:Habituation"} xref: GO:0046959 is_a: NBO:0000177 ! non-associative learning property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T03:19:06Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000179 name: sensitization namespace: behavior_ontology def: "An increase in behavioral responses following repeated applications of a particular stimulus." [] {source="wikipedia:Sensitization"} is_a: NBO:0000177 ! non-associative learning property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T03:54:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000180 name: short-term memory namespace: behavior_ontology def: "A type of memory that allows the recall of something from several seconds to as long as a minute." [] {source="NBO:GVG"} xref: GO:0007614 is_a: NBO:0000306 ! memory storage behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T03:59:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000181 name: long-term memory namespace: behavior_ontology def: "This type of memory, lasting hours to months, critically depends on a transfer of the information from short term memory using repeated rehearsal." [] {source="NBO:GVG"} xref: GO:0007616 is_a: NBO:0000306 ! memory storage behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T03:59:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000182 name: sensory memory namespace: behavior_ontology def: "Report great detail about a complex stimulus immediately following its presentation. This ability forms within a few tens of milliseconds and decays again rapidly within a few hundred milliseconds." [] {source="NBO:GVG"} is_a: NBO:0000306 ! memory storage behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T03:59:19Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000183 name: long-lasting memory namespace: behavior_ontology def: "A memory that last for months to lifetime." [] {source="NBO:GVG"} is_a: NBO:0000306 ! memory storage behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T04:00:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000184 name: medium term memory namespace: behavior_ontology def: "A type of memory that allows the recall of something from minutes to several hours." [] {source="NBO:GVG"} xref: GO:0072375 is_a: NBO:0000306 ! memory storage behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-01T04:01:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000185 name: declarative memory namespace: behavior_ontology def: "Ability to become conscious of, or declare, facts and experiences." [] {source="NBO:GVG"} comment: Encoded by the hippocampus, entorhinal cortex, and perirhinal cortex but store possibly in the medial temporal lobe. synonym: "explicit memory" EXACT [] is_a: NBO:0000181 ! long-term memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T07:38:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000186 name: semantic memory namespace: behavior_ontology def: "Ability to consciously recall knowledge of facts that are independent of a specific time and place." [] {source="NBO:GVG"} comment: Medial temporal lobe, diencephalon. is_a: NBO:0000185 ! declarative memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T07:40:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000187 name: episodic memory namespace: behavior_ontology def: "Ability to explicitly recall information about a specific event that has occurred at a specific time and place." [] {source="NBO:GVG"} comment: Medial temporal lobe, diencephalon. is_a: NBO:0000185 ! declarative memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T07:41:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000188 name: non-declarative memory namespace: behavior_ontology alt_id: NBO:0000189 def: "Non-declarative memory type of memory, which does not need to involve conscious awareness in the act of recollection." [] {source="NBO:GVG"} comment: Encoded and probably stored by the cerebellum and the striatum but store in the amygdala. synonym: "implicit memory" EXACT [] synonym: "procedural memory" EXACT [] is_a: NBO:0000181 ! long-term memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T07:42:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000190 name: motor memory namespace: behavior_ontology def: "Consolidating a specific motor task into memory through repetition." [] {source="NBO:GVG"} comment: Depends on the cerebellum and basal ganglia. synonym: "muscle memory" EXACT [] is_a: NBO:0000188 ! non-declarative memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T07:54:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000191 name: emotional memory namespace: behavior_ontology def: "\"A type of memory associated with emotional experiences.\" [wikipedia:http\\://www.scholarpedia.org/article/Emotional_memory]" [] is_a: NBO:0000181 ! long-term memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T07:59:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000192 name: prospective memory namespace: behavior_ontology def: "Remembering to perform an intended action." [] {source="NBO:GVG"} is_a: NBO:0000185 ! declarative memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:16:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000193 name: event-based prospective memory namespace: behavior_ontology def: "Remembering to perform an intended action in respect to a particular event." [] {source="NBO:GVG"} is_a: NBO:0000192 ! prospective memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:19:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000194 name: time-based prospective memory namespace: behavior_ontology def: "Remembering to perform an intended action in respect to a particular time reference." [] {source="NBO:GVG"} is_a: NBO:0000192 ! prospective memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:19:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000195 name: autobiographical memory namespace: behavior_ontology def: "A type of memory for particular events within one's own life." [] {source="NBO:GVG"} is_a: NBO:0000187 ! episodic memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:27:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000196 name: visual memory namespace: behavior_ontology def: "\"Ability to store and retrieve previously experienced visual sensations and perceptions when the stimuli that originally evoked them are no longer present.\" [wikipedia:Visual_memory]" [] is_a: NBO:0000185 ! declarative memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:33:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000197 name: iconic memory namespace: behavior_ontology is_a: NBO:0000182 ! sensory memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:37:43Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000198 name: eidetic memory namespace: behavior_ontology def: "\"The ability to recall images, sounds, or objects in memory with extreme precision and in abundant volume.\" [wikipedia:Eidetic_memory]" [] synonym: "photographic memory" EXACT [] is_a: NBO:0000182 ! sensory memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:39:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000199 name: topographic memory namespace: behavior_ontology def: "Ability to orient oneself in space, to recognize and follow an itinerary, or to recognize familiar places." [] {source="NBO:GVG"} is_a: NBO:0000185 ! declarative memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:42:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000200 name: priming namespace: behavior_ontology def: "An implicit memory effect in which exposure to a stimulus influences response to a later stimulus." [] {source="NBO:GVG"} is_a: NBO:0000307 ! memory retrieval behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:50:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000201 name: direct priming namespace: behavior_ontology synonym: "repetition" EXACT [] is_a: NBO:0000200 ! priming property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:55:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000202 name: semantic priming namespace: behavior_ontology def: "A type of priming where the prime and the target are from the same semantic category and share features." [] {source="NBO:GVG"} is_a: NBO:0000200 ! priming property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:56:35Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000203 name: associative priming namespace: behavior_ontology def: "A type of priming where the target is a word that has a high probability of appearing with the prime, and is \\\"associated\\\" with it but not necessarily related in semantic features." [] {source="NBO:GVG"} is_a: NBO:0000200 ! priming property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:57:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000204 name: response priming namespace: behavior_ontology is_a: NBO:0000200 ! priming property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:58:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000205 name: conceptual priming namespace: behavior_ontology def: "A type of priming based on the meaning of a stimulus and is enhanced by semantic task." [] {source="NBO:GVG"} is_a: NBO:0000200 ! priming property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T08:59:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000206 name: perceptual priming namespace: behavior_ontology def: "A type priming based on the form of the stimulus and is enhanced by the match between the early and later stimuli." [] {source="NBO:GVG"} is_a: NBO:0000200 ! priming property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T09:00:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000207 name: sensory adaptation namespace: behavior_ontology def: "Change in the responsiveness of a sensory system when confronted with a constant stimulus." [] {source="NBO:GVG"} is_a: NBO:0000178 ! habituation property_value: http://purl.org/dc/elements/1.1/date "2011-04-02T09:07:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000208 name: classical conditioning namespace: behavior_ontology def: "A form of associative learning that requires an unconditional reflex, where an unconditional stimulus (US)brings about an automatic, unlearned (unconditional) response (UR). If a neutral stimulus (NS) tends to precede it, an association is made and the conditional response (CR) becomes transferred onto the (previously neutral) conditional strimulus (CS); a conditional reflex has been learned." [] {source="NBO:GVG"} synonym: "Pavlovian conditioning" EXACT [] synonym: "respondent conditioning" EXACT [] is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T08:57:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000209 name: fear conditioning namespace: behavior_ontology def: "A type of associative learning that allows organisms to acquire affective responses, such as fear, in situations where a particular context or stimulus is predictably elicits fear via an aversive context." [] {source="NBO:GVG"} is_a: NBO:0000778 ! emotional conditioning intersection_of: NBO:0000208 ! classical conditioning intersection_of: is_about NBO:0000091 ! fear-related behavior relationship: is_about NBO:0000091 ! fear-related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T08:58:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000210 name: avoidance learning behavior namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T09:01:08Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000211 name: conditioned taste aversion namespace: behavior_ontology synonym: "Garcia conditioning" EXACT [] xref: GO:0001661 is_a: NBO:0000208 ! classical conditioning property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T09:04:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000212 name: operant conditioning behavior namespace: behavior_ontology def: "\"Operant conditioning is the use of a behavior's antecedent and/or its consequence to influence the occurrence and form of behavior.\" [wikipedia:Operant_conditioning]" [] comment: Operant conditioning is distinguished from classical conditioning in that operant conditioning deals with the modification of "voluntary behavior" or operant behavior. synonym: "instrumental conditioning" EXACT [] synonym: "instrumental learning" EXACT [] xref: GO:0035106 is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T09:05:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000213 name: imprinting behavior namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T09:08:06Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000214 name: latent learning behavior namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T09:11:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000215 name: observational learning namespace: behavior_ontology synonym: "modeling" EXACT [] synonym: "vicarious learning" EXACT [] is_a: NBO:0000220 ! social learning property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T09:11:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000216 name: language learning behavior namespace: behavior_ontology is_a: NBO:0000022 ! learning behavior intersection_of: NBO:0000022 ! learning behavior intersection_of: is_about NBO:0000745 ! language communication behavior relationship: is_about NBO:0000745 ! language communication behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-03T09:11:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000217 name: active avoidance learning behavior namespace: behavior_ontology def: "Avoidance learning when the action occurs." [] {source="NBO:GVG"} is_a: NBO:0000210 ! avoidance learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:22:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000218 name: passive avoidance learning behavior namespace: behavior_ontology def: "Avoidance learning when no action occurs." [] {source="NBO:GVG"} is_a: NBO:0000210 ! avoidance learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:22:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000219 name: escape learning behavior namespace: behavior_ontology def: "Avoid a situation completely." [] {source="NBO:GVG"} is_a: NBO:0000210 ! avoidance learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:25:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000220 name: social learning namespace: behavior_ontology def: "Associative learning behavior that arises from observing or interacting with another individual." [] comment: Original definition: "The sociological process of training individuals in a society to act or respond in a manner generally approved by the society in general and peer groups within society." [wikipedia:Social_conditioning] is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/contributor https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:34:46Z" xsd:string property_value: source https://en.wikipedia.org/wiki/Social_learning_in_animals created_by: George Gkoutos [Term] id: NBO:0000221 name: conditioned emotional response namespace: behavior_ontology is_a: NBO:0000003 ! emotional behavior is_a: NBO:0000171 ! associative learning behavior intersection_of: NBO:0000171 ! associative learning behavior intersection_of: in_response_to NBO:0000778 ! emotional conditioning relationship: in_response_to NBO:0000778 ! emotional conditioning property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:36:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000222 name: conditioned place preference behavior namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:40:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000223 name: contextual conditioning behavior namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:42:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000224 name: cued conditioning behavior namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:43:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000225 name: perceptual constancy behavior namespace: behavior_ontology def: "\"Perception of objects remains the same despite changes in their image on the retina.\" [:http\\://science.jrank.org/pages/5094/Perception.html]" [] is_a: NBO:0000308 ! sensation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:47:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000226 name: spinal conditioning namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:48:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000227 name: eye blink conditioning behavior namespace: behavior_ontology is_a: NBO:0000208 ! classical conditioning intersection_of: NBO:0000208 ! classical conditioning intersection_of: is_about NBO:0000749 ! blinking relationship: is_about NBO:0000749 ! blinking property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:55:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000228 name: jaw movement conditioning behavior namespace: behavior_ontology is_a: NBO:0000208 ! classical conditioning intersection_of: NBO:0000208 ! classical conditioning intersection_of: is_about NBO:0000747 ! jaw movement relationship: is_about NBO:0000747 ! jaw movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T03:57:01Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000229 name: vestibular behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the awareness of body balance and movement." [] {source="NBO:GVG"} synonym: "pathological vestibular behaviour" EXACT [] is_a: NBO:0000656 ! somatic sensation related behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T06:34:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000230 name: pleasure behavior namespace: behavior_ontology is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T07:49:51Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000231 name: excitement behavior namespace: behavior_ontology is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T07:50:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000232 name: distress behavior namespace: behavior_ontology is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T07:50:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000233 name: motivation behavior namespace: behavior_ontology alt_id: NBO:0000050 def: "Behavior related to the tendency of an organism to maintain internal equilibrium." [] {source="NBO:GVG"} synonym: "behavioral homeostasis" EXACT [] synonym: "maintenance behaviour" EXACT [] synonym: "perception of need" EXACT [] is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:29:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000234 name: thirst motivation behavior namespace: behavior_ontology def: "Behavior related to the deprivation of water." [] {source="NBO:GVG"} is_a: GO:0009414 ! response to water deprivation is_a: NBO:0000233 ! motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:29:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000235 name: hunger motivation behavior namespace: behavior_ontology def: "Behavior related to the deprivation of food." [] {source="NBO:GVG"} synonym: "appetite related behaviour" EXACT [] is_a: NBO:0000233 ! motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:30:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000236 name: sexual motivation behavior namespace: behavior_ontology def: "Behavior related to the drive of an organism to engage in sexual activity." [] {source="NBO:GVG"} is_a: NBO:0000233 ! motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:30:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000237 name: hunger regulation namespace: behavior_ontology def: "Any process which modulates the physical craving for food." [] {source="NBO:GVG"} xref: GO:0032098 is_a: NBO:0000235 ! hunger motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:33:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000238 name: short term hunger regulation namespace: behavior_ontology def: "Any process which modulates the physical craving for food over short term food deprivation." [] {source="NBO:GVG"} is_a: NBO:0000237 ! hunger regulation property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:33:34Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000239 name: long term hunger regulation namespace: behavior_ontology def: "Any process which modulates the physical craving for food over long term food deprivation." [] {source="NBO:GVG"} is_a: NBO:0000237 ! hunger regulation property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:33:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000240 name: anorexia nervosa namespace: behavior_ontology is_a: NBO:0000539 ! eating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:35:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000241 name: bulimia nervosa namespace: behavior_ontology is_a: NBO:0000539 ! eating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:36:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000242 name: obesity namespace: behavior_ontology is_a: NBO:0000539 ! eating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:36:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000243 name: behavioral phenotype namespace: behavior_ontology def: "An observable characteristic of the behavior of an organism." [] {source="NBO:RH"} xref: HP:0000708 property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:51:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000244 name: pathological anxiety namespace: behavior_ontology synonym: "hysteria" EXACT [] synonym: "pathological anxiety disorder" EXACT [] is_a: NBO:0000601 ! emotional behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:51:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000245 name: generalized anxiety namespace: behavior_ontology def: "\"A pathological anxiety characterized by long-lasting anxiety that is not focused on any one object or situation.\" [wikipedia:Generalized_anxiety_disorder]" [] synonym: "GAD" EXACT [] is_a: NBO:0000244 ! pathological anxiety property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:52:08Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000246 name: phobia namespace: behavior_ontology def: "A pathological anxiety characterized by fear or anxiety triggered by a specific stimulus or situation." [] {source="NBO:GVG"} synonym: "phobic disorder" EXACT [] is_a: NBO:0000244 ! pathological anxiety property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:52:18Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000247 name: panic namespace: behavior_ontology def: "\"A pathological anxiety characterized by brief attacks of intense terror and apprehension, often marked by trembling, shaking, confusion, dizziness, nausea, difficulty breathing.\" [wikipedia:Panic_disorder]" [] is_a: NBO:0000244 ! pathological anxiety property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:52:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000248 name: obsessive-compulsive disorder namespace: behavior_ontology def: "\"A pathological anxiety primarily characterized by repetitive obsessions (distressing, persistent, and intrusive thoughts or images) and compulsions (urges to perform specific acts or rituals).\" [wikipedia:Obsessive%E2%80%93compulsive_disorder]" [] synonym: "OCD" EXACT [] xref: HP:0000722 is_a: NBO:0000244 ! pathological anxiety property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:52:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000249 name: somatoform behavior phenotype namespace: behavior_ontology def: "\"A pathological behavior characterized by one or more symptoms of a physical dysfunction but for which there is no identifiable organic cause.\" [wikipedia:Somatoform_disorder]" [] synonym: "pathological somatoform behaviour" EXACT [] is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:53:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000250 name: conversion disorder namespace: behavior_ontology def: "\"A somatoform disorder characterised by a physical dysfunction (blindness, deafness, paralysis, numbness, etc. ) that has no underlying organic basis.\" [wikipedia:Conversion_disorder]" [] synonym: "hysteria" EXACT [] is_a: NBO:0000249 ! somatoform behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:53:18Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000251 name: hypochondriasis namespace: behavior_ontology def: "A somatoform disorder characterised by a continuing belief that one has one or more serious illnesses although no medical evidence supports the belief." [] {source="wikipedia:Hypochondriasis"} synonym: "health anxiety" EXACT [] synonym: "health phobia" EXACT [] synonym: "hypochondria" EXACT [] is_a: NBO:0000249 ! somatoform behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:53:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000252 name: dissociative disorders namespace: behavior_ontology is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:54:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000253 name: dissociative amnesia namespace: behavior_ontology is_a: NBO:0000252 ! dissociative disorders property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:54:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000254 name: dissociative fugue namespace: behavior_ontology is_a: NBO:0000252 ! dissociative disorders property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:54:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000255 name: dissociative identity disorder namespace: behavior_ontology is_a: NBO:0000252 ! dissociative disorders property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:54:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000256 name: mood disorder namespace: behavior_ontology is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:55:19Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000257 name: major depressive disorder namespace: behavior_ontology synonym: "clinical depression" EXACT [] synonym: "major depression" EXACT [] synonym: "MDD" EXACT [] synonym: "unipolar depression" EXACT [] is_a: NBO:0000515 ! depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:55:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000258 name: bipolar disorder namespace: behavior_ontology def: "\"A mood disorder formerly characterised by alternating periods of mania and depression (and in some cases rapid cycling, mixed states, and psychotic symptoms).\" [wikipedia:Bipolar_disorder]" [] synonym: "BD" EXACT [] synonym: "bipolar affective disorder" EXACT [] synonym: "manic depression" EXACT [] xref: NBO:0000258 is_a: NBO:0000256 ! mood disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:55:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000259 name: psychotic disorder namespace: behavior_ontology xref: HP:0000709 is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:56:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000260 name: paranoid schizophrenia namespace: behavior_ontology is_a: NBO:0000259 ! psychotic disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:56:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000261 name: catatonic schizophrenia namespace: behavior_ontology is_a: NBO:0000259 ! psychotic disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:57:08Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000262 name: disorganized (hebephrenic) schizophrenia namespace: behavior_ontology is_a: NBO:0000259 ! psychotic disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:57:19Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000263 name: undifferentiated schizophrenia namespace: behavior_ontology is_a: NBO:0000259 ! psychotic disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:57:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000264 name: residual schizophrenia namespace: behavior_ontology is_a: NBO:0000259 ! psychotic disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:57:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000265 name: personality disorder namespace: behavior_ontology comment: (http://www.cliffsnotes.com/study_guide/Classifying-Psychological-Disorders.topicArticleId-25438,articleId-25396.html). xref: HP:0000751 is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T08:59:01Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000266 name: cognitive behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour related to cognitive processes." [] {source="NBO:RH"} is_a: NBO:0000243 ! behavioral phenotype is_a: PATO:0000001 ! characteristic property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:01:18Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000267 name: delirium namespace: behavior_ontology is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:01:41Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000268 name: dementia namespace: behavior_ontology xref: HP:0000726 is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:01:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000269 name: amnestic disorder namespace: behavior_ontology is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:02:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000270 name: feeding behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior associated with the intake of food or liquids." [] {source="NBO:GVG"} is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:02:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000271 name: group behavior namespace: behavior_ontology def: "Behaviors that are described for or done by groups of animals, not individual animals [NBO:SMAC]" [] synonym: "group actions" EXACT [] is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:05:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000272 name: social facilitation namespace: behavior_ontology is_a: NBO:0000271 ! group behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:05:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000273 name: social interference namespace: behavior_ontology synonym: "social loafing" EXACT [] is_a: NBO:0000271 ! group behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:05:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000274 name: group polarization namespace: behavior_ontology is_a: NBO:0000271 ! group behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:06:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000275 name: groupthink namespace: behavior_ontology is_a: NBO:0000271 ! group behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:06:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000276 name: vocal aggression behavior namespace: behavior_ontology def: "A behavioral interaction between organisms in which one organism exhibits aggression using vocal or verbal means." [] {source="NBO:GVG"} synonym: "verbal aggression behaviour" EXACT [] is_a: NBO:0000741 ! aggressive behavior by means intersection_of: NBO:0000015 ! aggressive behavior intersection_of: by_means NBO:0000037 ! vocalization behavior relationship: by_means NBO:0000037 ! vocalization behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:07:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000277 name: discriminatory behavior namespace: behavior_ontology synonym: "" EXACT [] synonym: "discrimination" EXACT [] synonym: "prejudice" EXACT [] is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:11:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000278 name: gender specific discriminatory behavior namespace: behavior_ontology synonym: "sexism" EXACT [] is_a: NBO:0000277 ! discriminatory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:12:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000279 name: age specific discriminatory behavior namespace: behavior_ontology def: "A discriminatory behavior that is related to age." [] {source="NBO:GVG"} synonym: "ageism" EXACT [] is_a: NBO:0000277 ! discriminatory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:12:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000280 name: attraction-related behavior namespace: behavior_ontology is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:16:35Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000281 name: affiliation namespace: behavior_ontology def: "Behavior related to having a generally positive attitude toward another person." [] {source="MBP:GVG"} is_a: NBO:0000280 ! attraction-related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:16:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000282 name: liking namespace: behavior_ontology def: "Wanting to be with another person." [] {source="NBO:GVG"} is_a: NBO:0000280 ! attraction-related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:17:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000283 name: friendship namespace: behavior_ontology is_a: NBO:0000282 ! liking property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:17:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000284 name: love namespace: behavior_ontology is_a: NBO:0000282 ! liking property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:18:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000285 name: altruism behavior namespace: behavior_ontology def: "A helping behavior (without expectation of extrinsic rewards and sometimes involving personal risk or sacrifice) that benefits individuals or society." [] {source="NBO:GVG"} is_a: NBO:0000286 ! prosocial behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:19:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000286 name: prosocial behavior namespace: behavior_ontology def: "\"Prosocial behavior is caring about the welfare and rights of others, feeling concern and empathy for them, and acting in ways that benefit others.\" [wikipedia:Prosocial_behavior]" [] is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:22:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000287 name: helping behavior namespace: behavior_ontology def: "\"Helping behavior refers to voluntary actions intended to help the others, with reward regarded or disregarded.\" [wikipedia:Helping_behavior]" [] is_a: NBO:0000286 ! prosocial behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:23:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000288 name: reciprocal altruism namespace: behavior_ontology def: "\"Reciprocal altruism is the idea that the incentive for an individual to help in the present is based on the expectation of the potential receipt in the future.\" [wikipedia:Helping_behavior]" [] is_a: NBO:0000286 ! prosocial behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:25:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000289 name: social influence related behavior namespace: behavior_ontology is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:26:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000290 name: conformity namespace: behavior_ontology is_a: NBO:0000289 ! social influence related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:27:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000291 name: obedience to authority namespace: behavior_ontology is_a: NBO:0000289 ! social influence related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:27:43Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000292 name: bystander intervention namespace: behavior_ontology is_a: NBO:0000289 ! social influence related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:27:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000293 name: behavior stemming from intelligence namespace: behavior_ontology def: "Behavior related to one or more capacities of the mind." [] {source="wikipedia:Intelligence"} is_a: NBO:0000607 ! cognitive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:30:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000294 name: behavior stemming from emotional intelligence namespace: behavior_ontology def: "\"Behavior stemming from the ability to identify, assess, and control the emotions of oneself, of others, and of groups.\" [wikipedia:Emotional_intelligence]" [] is_a: NBO:0000293 ! behavior stemming from intelligence property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:30:47Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000295 name: satiation namespace: behavior_ontology is_a: NBO:0000238 ! short term hunger regulation property_value: http://purl.org/dc/elements/1.1/date "2011-04-18T10:37:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000296 name: conciliation behavior namespace: behavior_ontology def: "Behavior that facilitates the restoration of normal interactions between parties that recently engaged in a conflict.[NBO:AC]" [] synonym: "reconciliation" EXACT [] synonym: "reconciliation behavior" EXACT [] is_a: NBO:0000121 ! agonistic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T09:50:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000297 name: behavior stemming from problem solving namespace: behavior_ontology def: "\"Behavior associated with problem finding and problem shaping.\" [wikipedia:Problem_solving]" [] is_a: NBO:0000293 ! behavior stemming from intelligence property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:31:35Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000298 name: behavior stemming from communication intelligence namespace: behavior_ontology def: "Behavior stemming from intelligence associated with the capacity of conveying information. (Example: behavior adaptation in chimpanzees in order to communicate with humans.)" [] {source="NBO:GVG"} is_a: NBO:0000293 ! behavior stemming from intelligence is_a: NBO:0000612 ! communication behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:31:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000299 name: alloparental behavior namespace: behavior_ontology is_a: NBO:0000044 ! parental behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:36:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000300 name: male aggressive behavior namespace: behavior_ontology def: "A domineering, assault posture and/or hostile physical action towards animals exhibited by male animals." [] {source="NBO:GVG"} synonym: "male aggressive behaviour" EXACT [] xref: GO:0001966 is_a: NBO:0000116 ! gender-related aggressive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:39:19Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000301 name: female aggressive behavior namespace: behavior_ontology def: "A domineering, assault posture and/or hostile physical action towards animals exhibited by female animals." [] {source="NBO:GVG"} synonym: "female aggressive behaviour" EXACT [] is_a: NBO:0000116 ! gender-related aggressive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:39:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000302 name: maternal aggressive behavior namespace: behavior_ontology def: "A domineering, assault posture and/or hostile physical action towards animals exhibited by a mother or attending female." [] {source="NBO:GVG"} synonym: "maternal aggression" EXACT [] xref: GO:0002125 is_a: NBO:0000048 ! protection of offspring behavior is_a: NBO:0000150 ! maternal behavior is_a: NBO:0000301 ! female aggressive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:39:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000303 name: paternal aggressive behavior namespace: behavior_ontology def: "A domineering, assault posture and/or hostile physical action towards animals exhibited by a father or attending male." [] {source="NBO:GVG"} synonym: "paternal aggression" EXACT [] is_a: NBO:0000048 ! protection of offspring behavior is_a: NBO:0000151 ! paternal behavior is_a: NBO:0000300 ! male aggressive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:40:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000304 name: memory loss behavior namespace: behavior_ontology def: "Behavior related with the gradual loss of information and experiences stored in the memory of an organism." [] {source="NBO:GVG"} synonym: "forgetting" EXACT [] is_a: NBO:0000170 ! memory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:49:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000305 name: memory encoding behavior namespace: behavior_ontology is_a: NBO:0000170 ! memory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:49:41Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000306 name: memory storage behavior namespace: behavior_ontology def: "Behavior related with the ability of an organism's ability to store information and experiences." [] {source="NBO:GVG"} synonym: "memory storage behaviour" EXACT [] is_a: NBO:0000170 ! memory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:53:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000307 name: memory retrieval behavior namespace: behavior_ontology def: "Behavior related with the ability of an organism's ability to recall information and experiences." [] {source="NBO:GVG"} synonym: "memory retrieval behaviour" EXACT [] is_a: NBO:0000170 ! memory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T09:55:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000308 name: sensation behavior namespace: behavior_ontology alt_id: NBO:0000454 def: "Cognitive perception of a sensation by any of the five senses -- vision, touch, smell, taste, and hearing." [] {source="NBO:GVG"} comment: Example: moving head to watch passing object. synonym: "behavior involving perception" EXACT [] synonym: "perception behavior" EXACT [] is_a: NBO:0000607 ! cognitive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-04T10:00:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000309 name: social phobia namespace: behavior_ontology def: "A phobia characterised by fear of social or performance situations in which embarrassment may occur." [] {source="NBO:GVG"} is_a: NBO:0000246 ! phobia property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T09:35:47Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000310 name: acrophobia namespace: behavior_ontology def: "A phobia characterised by fear of high places." [] {source="NBO:GVG"} is_a: NBO:0000246 ! phobia property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T09:36:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000311 name: sleep motivation behavior namespace: behavior_ontology def: "Behavior related to the actions of an organism in relation to sleep." [] {source="NBO:GVG"} synonym: "sleep motivation behaviour" EXACT [] is_a: NBO:0000233 ! motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T09:46:01Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000312 name: regulation of sleep namespace: behavior_ontology def: "Any process that modulates the frequency, rate or extent of sleep." [] {source="GOC:jl"} is_a: NBO:0000311 ! sleep motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T09:46:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000313 name: behavior process namespace: behavior_ontology alt_id: NBO:0000000 def: "\"The action, reaction, or performance of an organism in response to external or internal stimuli.\" [GO:GO\\:0007610]" [] synonym: "behavior" EXACT [] synonym: "behaviour" EXACT [] xref: GO:0007610 is_a: GO:0007610 ! behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T09:53:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000314 name: visual behavior namespace: behavior_ontology def: "\"Behavior related to the actions or reactions of an organism in response to a visual stimulus.\" [GO:0007632]" [] synonym: "behavioral response to visual stimulus" EXACT [] synonym: "behavioural response to visual stimulus" EXACT [] synonym: "visual behaviour" EXACT [] is_a: NBO:0000308 ! sensation behavior intersection_of: NBO:0000308 ! sensation behavior intersection_of: in_response_to GO:0007601 ! visual perception relationship: in_response_to GO:0007601 ! visual perception property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:36:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000315 name: optokinetic behavior namespace: behavior_ontology def: "\"Behavior related to the actions or reactions of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus.\" [GO:0007634]" [] xref: GO:0007634 is_a: NBO:0000314 ! visual behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:37:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000316 name: auditory behavior namespace: behavior_ontology def: "\"Behavior related to the actions or reactions of an organism in response to a sound.\" [GO:0031223]" [] synonym: "hearing behaviour" EXACT [] xref: GO:0031223 is_a: NBO:0000308 ! sensation behavior intersection_of: NBO:0000308 ! sensation behavior intersection_of: in_response_to GO:0007605 ! sensory perception of sound relationship: by_means UBERON:0002105 ! vestibulo-auditory system relationship: in_response_to GO:0007605 ! sensory perception of sound property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:38:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000317 name: vestibular behavior namespace: behavior_ontology def: "Behavior related to the awareness of body balance and movement." [] {source="MBP:GVG"} synonym: "proprioception" EXACT [] is_a: NBO:0000327 ! somatic sensation related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:40:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000318 name: balance namespace: behavior_ontology is_a: NBO:0000317 ! vestibular behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:44:05Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000319 name: body rotation sensation behavior namespace: behavior_ontology is_a: NBO:0000317 ! vestibular behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:44:19Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000320 name: gravitation sensation behavior namespace: behavior_ontology is_a: NBO:0000317 ! vestibular behavior relationship: BFO:0000050 GO:0050957 ! part of equilibrioception property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:44:34Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000321 name: movement sensation behavior namespace: behavior_ontology is_a: NBO:0000317 ! vestibular behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:44:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000322 name: chemosensory behavior namespace: behavior_ontology def: "Behavior as a result of the sensation of chemicals." [] {source="NBO:GVG"} xref: GO:0007635 is_a: NBO:0001632 ! behavioral response to chemical stimulus intersection_of: NBO:0001632 ! behavioral response to chemical stimulus intersection_of: in_response_to GO:0007606 ! sensory perception of chemical stimulus relationship: in_response_to GO:0007606 ! sensory perception of chemical stimulus property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:48:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000323 name: olfactory behavior namespace: behavior_ontology def: "Behavior related to the sensation of odors." [] {source="NBO:GVG"} xref: GO:0042048 is_a: NBO:0000322 ! chemosensory behavior intersection_of: NBO:0000322 ! chemosensory behavior intersection_of: in_response_to GO:0007608 ! sensory perception of smell relationship: in_response_to GO:0007608 ! sensory perception of smell property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:48:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000324 name: taste behavior namespace: behavior_ontology comment: Taste can be described as five basic sensations, sweet, sour, salty, bitter and umamy which can be combined in various ways to make all other taste sensations. synonym: "gustatory behavior" EXACT [] is_a: NBO:0000322 ! chemosensory behavior intersection_of: NBO:0000322 ! chemosensory behavior intersection_of: in_response_to GO:0050909 ! sensory perception of taste relationship: in_response_to GO:0050909 ! sensory perception of taste property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T10:50:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000326 name: thermosensory behavior namespace: behavior_ontology def: "Behavior related to environmental temperature." [] {source="NBO:GVG"} synonym: "thermosensation behaviour" EXACT [] xref: GO:0040040 is_a: NBO:0000330 ! cutaneous sensation behavior intersection_of: NBO:0000330 ! cutaneous sensation behavior intersection_of: in_response_to GO:0050955 ! thermoception relationship: in_response_to GO:0050955 ! thermoception property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T11:00:51Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000327 name: somatic sensation related behavior namespace: behavior_ontology def: "Behavior related to the sensations arising from the skin and from the muscles, tendons, and joints." [] {source="OBP:GVG"} comment: Sensations arising from the internal organs (the viscera), such as pain or the sense of fullness of the stomach or bladder, may therefore be included, although they are usually considered separately as visceral sensations. Pain arising from the viscera is often felt as though it comes from some part of the body surface or underlying tissue. is_a: NBO:0000751 ! perception behavior by means property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T11:01:08Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000328 name: hot sensation behavior namespace: behavior_ontology def: "Behavior related to the detection of high environmental temperature." [] {source="NBO:GVG"} is_a: NBO:0000326 ! thermosensory behavior intersection_of: NBO:0000326 ! thermosensory behavior intersection_of: in_response_to PATO:0001305 ! increased temperature relationship: in_response_to PATO:0001305 ! increased temperature property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T11:09:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000329 name: cold sensation behavior namespace: behavior_ontology def: "Behavior related to the detection of low environmental temperature." [] {source="NBO:GVG"} is_a: NBO:0000326 ! thermosensory behavior intersection_of: NBO:0000326 ! thermosensory behavior intersection_of: in_response_to PATO:0001306 ! decreased temperature relationship: in_response_to PATO:0001306 ! decreased temperature property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T11:09:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000330 name: cutaneous sensation behavior namespace: behavior_ontology is_a: NBO:0000327 ! somatic sensation related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T11:11:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000331 name: nociceptive behavior namespace: behavior_ontology synonym: "nociception" EXACT [] synonym: "pain" EXACT [] is_a: NBO:0000330 ! cutaneous sensation behavior intersection_of: NBO:0000330 ! cutaneous sensation behavior intersection_of: in_response_to GO:0019233 ! sensory perception of pain relationship: in_response_to GO:0019233 ! sensory perception of pain property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T11:13:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000332 name: touch related behavior namespace: behavior_ontology is_a: NBO:0000330 ! cutaneous sensation behavior intersection_of: NBO:0000330 ! cutaneous sensation behavior intersection_of: in_response_to GO:0050975 ! sensory perception of touch relationship: in_response_to GO:0050975 ! sensory perception of touch property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T11:36:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000333 name: chemical nociceptive behavior namespace: behavior_ontology synonym: "chemical nociception behaviour" EXACT [] is_a: NBO:0000331 ! nociceptive behavior intersection_of: NBO:0000331 ! nociceptive behavior intersection_of: in_response_to GO:0050968 ! detection of chemical stimulus involved in sensory perception of pain relationship: in_response_to GO:0050968 ! detection of chemical stimulus involved in sensory perception of pain property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T12:38:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000334 name: mechanical nociceptive behavior namespace: behavior_ontology synonym: "mechanical nociception behaviour" EXACT [] is_a: NBO:0000331 ! nociceptive behavior intersection_of: NBO:0000331 ! nociceptive behavior intersection_of: in_response_to GO:0050966 ! detection of mechanical stimulus involved in sensory perception of pain relationship: in_response_to GO:0050966 ! detection of mechanical stimulus involved in sensory perception of pain property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T12:39:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000335 name: thermal nociceptive behavior namespace: behavior_ontology synonym: "thermal nociception behaviour" EXACT [] is_a: NBO:0000331 ! nociceptive behavior intersection_of: NBO:0000331 ! nociceptive behavior intersection_of: in_response_to GO:0050965 ! detection of temperature stimulus involved in sensory perception of pain relationship: in_response_to GO:0050965 ! detection of temperature stimulus involved in sensory perception of pain property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T12:41:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000336 name: chemically-elicited antinociceptive behavior namespace: behavior_ontology synonym: "chemically-elicited antinociception behaviour" EXACT [] is_a: NBO:0000331 ! nociceptive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T12:45:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000337 name: pressure related behavior namespace: behavior_ontology is_a: NBO:0000330 ! cutaneous sensation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T02:06:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000338 name: kinesthetic behavior namespace: behavior_ontology def: "\"Movement behavior of the body or its parts.\"" [] is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T02:08:47Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000339 name: motor coordination namespace: behavior_ontology alt_id: NBO:0000340 def: "\"The coordination of combinations of body movements created with the kinematic (such as spatial direction) and kinetic (force) parameters that result in intended actions.\" [wikipedia:Motor_coordination]" [] is_a: NBO:0000317 ! vestibular behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T03:32:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000341 name: eye-hand coordination namespace: behavior_ontology def: "\"The coordinated control of eye movement with hand movement, and the processing of visual input to guide reaching and grasping along with the use of proprioception of the hands to guide the eyes.\" [wikipedia:Eye%E2%80%93hand_coordination]" [] comment: Optic apraxia - total inability of a person to coordinate eye and hand movements.\\nOptic ataxia - inability of a person to coordinate eye and hand movements. synonym: "hand eye coordination" EXACT [] is_a: NBO:0000348 ! fine motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T03:43:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000342 name: limb coordination namespace: behavior_ontology def: "The coordination of limb movement." [] {source="NBO:GVG"} is_a: NBO:0000347 ! gross motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T03:49:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000343 name: intralimb coordination namespace: behavior_ontology def: "Coordination that results in spatial and temporal planning of reaching and grasping." [] {source="NBO:GVG"} synonym: "intra-limb coordination" EXACT [] is_a: NBO:0000346 ! upper limb coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T03:57:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000344 name: interlimb coordination namespace: behavior_ontology def: "Coordination that results in bimanual synchronization and temporal association of the hands." [] {source="NBO:GVG"} synonym: "inter-limb coordination" EXACT [] is_a: NBO:0000346 ! upper limb coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T03:58:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000345 name: lower limb coordination namespace: behavior_ontology def: "The coordination of lower limb movement." [] {source="NBO:GVG"} is_a: NBO:0000342 ! limb coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T04:05:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000346 name: upper limb coordination namespace: behavior_ontology def: "The coordination of upper limb movement." [] {source="NBO:GVG"} is_a: NBO:0000342 ! limb coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T04:05:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000347 name: gross motor coordination namespace: behavior_ontology def: "The coordination of large muscle groups and whole body movement." [] {source="NBO:GVG"} synonym: "large muscle coordination" EXACT [] synonym: "whole body coordination" EXACT [] is_a: NBO:0000339 ! motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T04:10:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000348 name: fine motor coordination namespace: behavior_ontology def: "Coordination of small muscle movements which occur usually in coordination with the eye." [] {source="NBO:GVG"} is_a: NBO:0000339 ! motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T04:14:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000349 name: manual dexterity namespace: behavior_ontology is_a: NBO:0000348 ! fine motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T04:17:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000350 name: graphomotor coordination namespace: behavior_ontology def: "Coordination involved in writing." [] {source="NBO:GVG"} is_a: NBO:0000339 ! motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T04:19:34Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000351 name: body coordination namespace: behavior_ontology def: "The coordination of the whole body movement." [] {source="NBO:GVG"} is_a: NBO:0000347 ! gross motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T05:28:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000352 name: upper body coordination namespace: behavior_ontology def: "The coordination of the lower body movement." [] {source="NBO:GVG"} is_a: NBO:0000351 ! body coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T05:30:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000353 name: lower body coordination namespace: behavior_ontology def: "The coordination of the upper body movement." [] {source="NBO:GVG"} is_a: NBO:0000351 ! body coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T05:30:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000354 name: bilateral coordination namespace: behavior_ontology is_a: NBO:0000347 ! gross motor coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-05T05:33:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000355 name: posture namespace: behavior_ontology def: "Intentionally or habitually assumed arrangement of the body and its limbs." [] {source="NBO:GVG"} is_a: NBO:0000317 ! vestibular behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T09:30:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000356 name: body posture namespace: behavior_ontology def: "Intentionally or habitually assumed arrangement of the body." [] {source="NBO:GVG"} is_a: NBO:0000355 ! posture intersection_of: NBO:0000355 ! posture intersection_of: has_participant UBERON:0000309 ! body wall relationship: has_participant UBERON:0000309 ! body wall property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T09:30:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000357 name: limb posture namespace: behavior_ontology def: "Intentionally or habitually assumed arrangement of the limbs." [] {source="NBO:GVG"} is_a: NBO:0000355 ! posture intersection_of: NBO:0000355 ! posture intersection_of: has_participant UBERON:0002101 ! limb relationship: has_participant UBERON:0002101 ! limb property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T09:31:06Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000358 name: resting posture namespace: behavior_ontology def: "Intentionally or habitually assumed arrangement of the body and its limbs in inactivity." [] {source="NBO:GVG"} is_a: NBO:0000355 ! posture property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T09:31:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000359 name: terrestrial locomotory behavior namespace: behavior_ontology def: "Behavior associated with surface locomotion." [] {source="NBO:GVG"} is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T09:44:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000360 name: leaping behavior namespace: behavior_ontology def: "Behavior related to the upward thrust produced by the rapid, simultaneous extension of the hind legs with the intend to cross wide gaps in the locomotor surface." [] {source="MBP:GVG"} synonym: "saltation" EXACT [] is_a: NBO:0000366 ! aerial locomotion behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T09:47:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000361 name: gait namespace: behavior_ontology def: "\"The pattern of movement of the limbs of animals, characterized by elements of progression, stability, speed and length over the ground.\" [MP:0001406]" [] is_a: NBO:0000342 ! limb coordination property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T10:07:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000362 name: stride namespace: behavior_ontology def: "A behavioral pattern characterized by the distance covered by as many steps as there are legs." [] {source="NBO:GVG"} is_a: NBO:0000361 ! gait property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T10:08:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000363 name: crawling behavior namespace: behavior_ontology def: "Behavior related to the movement resulting by dragging the body close to the ground." [] {source="NBO:GVG"} synonym: "crawl" EXACT [] is_a: NBO:0000359 ! terrestrial locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T11:39:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000364 name: arboreal locomotion behavior namespace: behavior_ontology def: "\"Behavior related to the locomotion of animals in trees.\" [wikipedia:Arboreal_locomotion]" [] is_a: NBO:0000368 ! climbing behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T11:40:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000365 name: brachiation namespace: behavior_ontology def: "arm over arm swinging movement through arboreal environment [NBO:AC]" [] comment: Arguably the epitome of arboreal locomotion, it involves swinging with the arms from one handhold to another. is_a: NBO:0000364 ! arboreal locomotion behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T11:42:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000366 name: aerial locomotion behavior namespace: behavior_ontology def: "Behavior related to the movement of an organism from one location to another through the air." [] {source="NBO:GVG"} is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T11:44:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000367 name: flight behavior namespace: behavior_ontology alt_id: NBO:0000072 def: "Behavior related to the self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement." [] {source="NBO:GVG"} synonym: "fly" EXACT [] synonym: "flying" EXACT [] xref: GO:0007629 is_a: NBO:0000366 ! aerial locomotion behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T11:45:51Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000368 name: climbing behavior namespace: behavior_ontology def: "Behavior related to the ascending a steep object." [] {source="NBO:GVG"} is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T11:46:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000369 name: gliding behavior namespace: behavior_ontology def: "Behavior related to the expansion lateral surface of the body with the intention of increasing the wind resistance against the body and hence reducing the speed of falling." [] {source="NBO:GVG"} is_a: NBO:0000366 ! aerial locomotion behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T12:20:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000370 name: saltation namespace: behavior_ontology def: "Behavior related to the upward thrust produced by the rapid, simultaneous extension of the hind legs with the intend to rise in the air." [] {source="NBO:GVG"} synonym: "hopping" EXACT [] is_a: NBO:0000016 ! jumping behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T12:25:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000371 name: aquatic locomotion namespace: behavior_ontology def: "Behavior related to the movement of an organism from one location to another through a liquid medium." [] {source="NBO:GVG"} synonym: "swim" EXACT [] synonym: "swimming" EXACT [] is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T12:33:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000372 name: directional control of locomotion namespace: behavior_ontology def: "Behavior related to the control of the direction of locomotion." [] {source="NBO:GVG"} is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:15:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000373 name: locomotory orientation behavior namespace: behavior_ontology def: "Behavior related to the ability of an animal to determine and to alter its position in the environment." [] {source="NBO:GVG"} is_a: NBO:0000372 ! directional control of locomotion property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:16:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000374 name: kinesis namespace: behavior_ontology def: "Alteration of speed or direction of movement in response to a sensory stimulus." [] {source="NBO:GVG"} xref: GO:0042465 is_a: NBO:0000373 ! locomotory orientation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:17:18Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000375 name: taxis namespace: behavior_ontology def: "Locomotory orientation in a specific spatial relationship to a stimulus." [] {source="NBO:GVG"} xref: GO:0042330 is_a: NBO:0000373 ! locomotory orientation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:17:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000376 name: steering behavior namespace: behavior_ontology def: "Behavior related to the mechanical alteration of the locomotor pattern through which the animal adjusts its position." [] {source="NBO:GVG"} is_a: NBO:0000372 ! directional control of locomotion property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:18:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000377 name: chemotactic behavior namespace: behavior_ontology def: "\"Locomotory orientation in response to specific chemical concentration gradient.\" [GO:0006935]" [] synonym: "chemotaxis" EXACT [] xref: GO:0006935 is_a: NBO:0000375 ! taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:23:34Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000378 name: gravitactic behavior namespace: behavior_ontology def: "\"Locomotory orientation in response to gravity.\" [GO:0048062]" [] synonym: "geotactic behaviour" EXACT [] synonym: "gravitaxis" EXACT [] xref: GO:0042332 is_a: NBO:0000375 ! taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:27:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000379 name: negative gravitactic behavior namespace: behavior_ontology def: "\"Locomotory orientation away from the source of gravity.\" [GO:0048060]" [] synonym: "negative geotactic behaviour" EXACT [] synonym: "negative gravitaxis" EXACT [] xref: GO:0048060 is_a: NBO:0000378 ! gravitactic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:32:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000380 name: positive gravitactic behavior namespace: behavior_ontology def: "\"Locomotory orientation towards the source of gravity.\" [GO:0048061]" [] synonym: "positive geotactic behaviour" EXACT [] synonym: "positive gravitaxis" EXACT [] xref: GO:0048061 is_a: NBO:0000378 ! gravitactic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:34:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000381 name: thigmotaxis namespace: behavior_ontology def: "\"Locomotory orientation in response to touch.\" [GO:0001966]" [] synonym: "stereotaxis" EXACT [] is_a: NBO:0000386 ! mechanical stimulus taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:45:18Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000382 name: energy taxis namespace: behavior_ontology def: "\"Locomotory orientation in response to physical parameters involved in energy generation.\" [GO:0009453]" [] xref: GO:0009453 is_a: NBO:0000375 ! taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:47:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000383 name: phototactic behavior namespace: behavior_ontology def: "\"Locomotory orientation in response to light.\" [GO:0042331]" [] synonym: "phototaxis" EXACT [] xref: GO:0042331 is_a: NBO:0000382 ! energy taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:48:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000384 name: thermotaxis namespace: behavior_ontology def: "\"Locomotory orientation in response to a temperature gradient.\" [GO:0043052]" [] xref: GO:0043052 is_a: NBO:0000382 ! energy taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:50:19Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000385 name: phonotaxis namespace: behavior_ontology def: "Locomotory orientation in response to sound." [] {source="NBO:GVG"} is_a: NBO:0000386 ! mechanical stimulus taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:58:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000386 name: mechanical stimulus taxis namespace: behavior_ontology def: "Locomotory orientation in response to mechanical stimulus." [] {source="NBO:GVG"} is_a: NBO:0000375 ! taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T01:59:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000387 name: barotaxis namespace: behavior_ontology def: "Locomotory orientation in response to pressure." [] {source="NBO:GVG"} is_a: NBO:0000386 ! mechanical stimulus taxis property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T02:01:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000388 name: involuntary movement behavior namespace: behavior_ontology def: "Behavior related to movements that occur independent of planning." [] {source="NBO:GVG"} comment: Movevents listed here are involuntary, but may be also generated by free will, like blinking of the eyelids and respiratory movements. is_a: NBO:0000001 ! body part movement disjoint_from: NBO:0000403 ! voluntary movement behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T02:35:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000389 name: reflexive behavior namespace: behavior_ontology alt_id: NBO:0000004 def: "Behavior related to involuntary movement in response to a stimulus." [] {source="NBO:GVG"} synonym: "reflex behaviour" EXACT [] is_a: NBO:0000388 ! involuntary movement behavior intersection_of: NBO:0000388 ! involuntary movement behavior intersection_of: by_means GO:0060004 ! reflex relationship: by_means GO:0060004 ! reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T02:36:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000390 name: primitive reflex namespace: behavior_ontology def: "\"Reflex actions originating in the central nervous system that are exhibited by normal infants in response to particular stimuli.\" [wikipedia:Primitive_reflexes]" [] synonym: "infant reflex" EXACT [] synonym: "infantile reflex" EXACT [] synonym: "newborn reflex" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T02:44:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000391 name: startle reflex namespace: behavior_ontology def: "\"An action or movement due to the application of a sudden unexpected stimulus.\" [wikipedia:Startle_reflex]" [] synonym: "alarm reaction" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T02:55:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000392 name: tonic labyrinthine reflex namespace: behavior_ontology def: "\"A reflex that arises when tilting the head back while lying on the back causes the back to stiffen and even arch backwards, the legs to straighten, stiffen, and push together, the toes to point, the arms to bend at the elbows and wrists, and the hands to become fisted or the fingers to curl.\" [wikipedia:Tonic_labyrinthine_reflex]" [] synonym: "TLR" EXACT [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:03:51Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000393 name: asymmetrical tonic neck reflex namespace: behavior_ontology def: "\"A reflex that assists in the birthing process and helps to develop muscle tone, kicking and stimulates vestibular function in utero.\" [wikipedia:Asymmetrical_tonic_neck_reflex]" [] synonym: "ATNR" EXACT [] synonym: "fencing reflex" EXACT [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:05:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000394 name: symmetrical tonic neck reflex namespace: behavior_ontology def: "A reflex that causes the eyes to alternately fixate at far and near, expanding vision development from arms length to far away." [] {source="MBP:GVG"} is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:10:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000395 name: galant reflex namespace: behavior_ontology def: "\"It is elicited by holding the newborn in ventral suspension (face down) and stroking along the one side of the spine. A reflex that caused the laterally flex toward the stimulated side when a newborn is held in ventral suspension (face down) and stroking along the one side of the spine.\" [NBO:Galant_reflex]" [] synonym: "spinal galant" EXACT [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:11:13Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000396 name: babkin reflex namespace: behavior_ontology def: "\"A reflex elicited by the application of pressure to both palms resulting varying responses such as head flexion, head rotation or opening of the mouth, or a combination of these responses.\" [wikipedia:Primitive_reflexes]" [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:14:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000397 name: swimming reflex namespace: behavior_ontology def: "\"A reflex that causes the infant to begin to paddle and kick in a swimming motion upon its placement face down in a pool of water.\" [NBO:Primitive_reflexes]" [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:15:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000398 name: plantar reflex namespace: behavior_ontology def: "\"A reflex elicited when the sole of the foot is stimulated with a blunt instrument.\" [wikipedia:Plantar_reflex]" [] is_a: NBO:0000390 ! primitive reflex is_a: NBO:0000404 ! stretch reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:18:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000399 name: palmar grasp reflex namespace: behavior_ontology def: "\"A reflex elicited by the placement of an object in the infant's hand and strokes their palm, causing its fingers to close and grasp it.\" [wikipedia:Primitive_reflexes]" [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:20:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000400 name: rooting reflex namespace: behavior_ontology def: "\"A reflex that causes a newborn infant to turn his head toward anything that strokes his cheek or mouth, searching for the object by moving his head in steadily decreasing arcs until the object is found.\" [wikipedia:Primitive_reflexes]" [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:22:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000401 name: sucking reflex namespace: behavior_ontology def: "\"A reflex that causes the infant to instinctively suck at anything that touches the roof of their mouth and suddenly starts to suck simulating the way they naturally eat.\" [wikipedia:Primitive_reflexes]" [] is_a: NBO:0000054 ! suckling behavior is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:25:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000402 name: walking reflex namespace: behavior_ontology def: "\"A reflex that causes the infant to attempt to 'walk' by placing one foot in front of the other when the soles of their feet touch a flat surface.\" [wikipedia:Primitive_reflexes]" [] synonym: "stepping reflex" EXACT [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:26:47Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000403 name: voluntary movement behavior namespace: behavior_ontology def: "Behavior related to movements executed with intent." [] {source="NBO:GVG"} is_a: GO:0050882 ! voluntary musculoskeletal movement is_a: NBO:0000001 ! body part movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T03:32:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000404 name: stretch reflex namespace: behavior_ontology def: "\"A muscle contraction in response to stretching within the muscle.\" [wikipedia:Stretch_reflex]" [] synonym: "deep tendon reflex" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:02:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000405 name: biceps reflex namespace: behavior_ontology def: "A deep tendon reflex that elicits involuntary contraction of the biceps brachii muscle." [] {source="NBO:GVG"} is_a: NBO:0000404 ! stretch reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:06:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000406 name: brachioradialis reflex namespace: behavior_ontology def: "\"A deep tendon reflex elicited by striking the lateral surface of the forearm proximal to the distal head of the radius, characterized by normal slight elbow flexion and forearm supination.\" [Medical disctionary:http\\://medical-dictionary.thefreedictionary.com/brachioradialis+reflex]" [] synonym: "supinator reflex" EXACT [] is_a: NBO:0000404 ! stretch reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:07:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000407 name: extensor digitorum reflex namespace: behavior_ontology def: "A reflex that elicits involuntary contraction of the extensor digitorum muscle." [] {source="NBO:GVG"} synonym: "BER" EXACT [] synonym: "Braunecker-Effenberg reflex" EXACT [] is_a: NBO:0000404 ! stretch reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:09:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000408 name: triceps reflex namespace: behavior_ontology def: "\"A deep tendon reflex that elicits involuntary contraction of the triceps brachii muscle.\" [wikipedia:Triceps_reflex]" [] is_a: NBO:0000404 ! stretch reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:12:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000409 name: patellar reflex namespace: behavior_ontology def: "A deep tendon reflex that elicits extension of the leg resulting from a sharp tap on the patellar tendon." [] {source="NBO:GVG"} synonym: "knee-jerk reflex" EXACT [] is_a: NBO:0000404 ! stretch reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:18:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000410 name: ankle jerk reflex namespace: behavior_ontology def: "\"A reflex bending of the foot resulting from contraction of the calf muscles when the Achilles tendon is sharply struck.\" [Medical Dictionary:http\\://medical-dictionary.thefreedictionary.com/Achilles+reflex]" [] synonym: "Achilles reflex" EXACT [] synonym: "Achilles tendon reflex" EXACT [] synonym: "ankle reflex" EXACT [] synonym: "triceps surae reflex" EXACT [] is_a: NBO:0000404 ! stretch reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:20:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000411 name: cranial nerve related reflex namespace: behavior_ontology def: "A reflex that involves cranial nerves." [] {source="wikipedia:Reflex"} is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:28:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000412 name: pupillary light reflex namespace: behavior_ontology def: "\"A reflex that controls the diameter of the pupil, in response to the intensity (luminance) of light that falls on the retina of the eye, thereby assisting in adaptation to various levels of darkness and light, in addition to retinal sensitivity.\" [wikipedia:Pupillary_light_reflex]" [] synonym: "pupillary reflex" EXACT [] is_a: NBO:0000411 ! cranial nerve related reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:28:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000413 name: accommodation reflex namespace: behavior_ontology def: "\"A reflex action of the eye, in response to focusing on a near object, then looking at distant object (and vice versa), comprising coordinated changes in vergence, lens shape and pupil size.\" [wikipedia:Accommodation_reflex]" [] is_a: NBO:0000411 ! cranial nerve related reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:29:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000414 name: jaw jerk reflex namespace: behavior_ontology synonym: "masseter reflex" EXACT [] is_a: NBO:0000411 ! cranial nerve related reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T04:30:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000415 name: corneal reflex namespace: behavior_ontology def: "\"An involuntary blinking of the eyelids elicited by stimulation of the cornea.\" [wikipedia:Corneal_reflex]" [] synonym: "blink reflex" EXACT [] synonym: "blinking" EXACT [] xref: GO:0060082 {http://purl.org/dc/elements/1.1/contributor="http://orcid.org/0000-0002-4277-2151"} is_a: NBO:0000411 ! cranial nerve related reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T06:08:06Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000416 name: vestibulo-ocular reflex namespace: behavior_ontology def: "\"A reflex eye movement that stabilizes images on the retina during head movement by producing an eye movement in the direction opposite to head movement, thus preserving the image on the center of the visual field.\" [wikipedia:Vestibulo-ocular_reflex]" [] synonym: "oculovestibular reflex" EXACT [] synonym: "vestibuloocular reflex" EXACT [] synonym: "VOR" EXACT [] is_a: NBO:0000411 ! cranial nerve related reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T06:11:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000417 name: physiologic nystagmus namespace: behavior_ontology def: "\"A form of involuntary eye movement that is part of the vestibulo-ocular reflex (VOR). It is characterized by alternating smooth pursuit in one direction and saccadic movement in the other direction.\" [wikipedia:Physiologic_nystagmus]" [] is_a: NBO:0000416 ! vestibulo-ocular reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T06:16:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000418 name: pharyngeal reflex namespace: behavior_ontology def: "\"A reflex contraction of the back of the throat, evoked by touching the soft palate.\" [wikipedia:Gag_reflex]" [] synonym: "gag reflex" EXACT [] synonym: "swallowing reflex" EXACT [] is_a: NBO:0000411 ! cranial nerve related reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-06T06:17:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000419 name: sleeping behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals." [] {source="NBO:GVG"} is_a: NBO:0000473 ! rhythmic behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T01:19:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000420 name: bruxism namespace: behavior_ontology def: "A NREM parasomnia characterised by Involuntarily grinding of teeth while sleeping." [] {source="MBP:GVG"} synonym: "" EXACT [] synonym: "teeth grinding" EXACT [] xref: HP:0003763 is_a: NBO:0000499 ! NREM parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T01:20:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000421 name: delayed sleep phase syndrome namespace: behavior_ontology def: "\"A circadian rhythm sleep disorder characterized by a much later than normal timing of sleep onset and offset and a period of peak alertness in the middle of the night.\" [wikipedia:Delayed_sleep_phase_syndrome]" [] synonym: "delayed sleep-phase disorder (DSPD)" EXACT [] synonym: "delayed sleep-phase type (DSPT)" EXACT [] synonym: "DSPS" EXACT [] is_a: NBO:0000487 ! intrinsic circadian rhythm sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T01:22:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000422 name: insomnia namespace: behavior_ontology def: "Inability to fall asleep and/or remain asleep for a reasonable amount of time." [] {source="NBO:GVG"} is_a: NBO:0000475 ! dyssomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T01:23:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000423 name: narcolepsy namespace: behavior_ontology def: "A dyssomnia characterised by excessive daytime sleepiness (EDS) in which a person experiences extreme fatigue and possibly falls asleep at inappropriate times." [] {source="wikipedia:Narcolepsy"} xref: MP:0005279 is_a: NBO:0000476 ! intrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T01:24:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000424 name: sleep terror namespace: behavior_ontology def: "A NREM parasomnia characterised by abrupt awakening from sleep with behavior consistent with terror and a temporary inability to regain full consciousness." [] {source="NBO:GVG"} synonym: "night terror" EXACT [] synonym: "Pavor nocturnus" EXACT [] is_a: NBO:0000499 ! NREM parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T01:25:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000425 name: abdominal reflex namespace: behavior_ontology def: "\"A reflex that results in the contraction of the muscles of the abdominal wall in response to stimulation of the overlying skin.\" [web:http\\://www.merriam-webster.com/medical/abdominal%20reflex]" [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:12:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000426 name: anocutaneous reflex namespace: behavior_ontology def: "\"Reflexive contraction of the external anal sphincter upon stroking of the skin around the anus.\" [wikipedia:Anal_wink]" [] synonym: "anal reflex" EXACT [] synonym: "anal wink" EXACT [] synonym: "perineal reflex" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:12:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000427 name: cremasteric reflex namespace: behavior_ontology def: "\"A reflex is elicited by lightly stroking the superior and medial (inner) part of the thigh resulting in a contraction of the cremaster muscle that pulls up the scrotum and testis on the side stroked.\" [wikipedia:Cremasteric_reflex]" [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:15:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000428 name: mammalian diving reflex namespace: behavior_ontology def: "\"A reflex in mammals which optimises respiration to allow staying underwater for extended periods of time.\" [wikipedia:Mammalian_diving_reflex]" [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:16:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000429 name: visceromotor reflex namespace: behavior_ontology def: "\"An increase in tonus (normal tension) of the tissues of the abdominal muscles resulting from painful stimuli originating in a viscus.\" [:http\\://www.wordinfo.info/words/index/inf]" [] is_a: NBO:0000425 ! abdominal reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:18:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000430 name: muscular defense namespace: behavior_ontology def: "\"A reflex of the abdominal muscles to contract upon mechanical force to the abdomen, and serves as protection.\" [wikipedia:Muscular_defense]" [] is_a: NBO:0000429 ! visceromotor reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:20:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000431 name: scratch reflex namespace: behavior_ontology alt_id: NBO:0000021 def: "\"A response to activation of sensory neurons whose peripheral terminals are located on the surface of the body.\" [wikipedia:Scratch_reflex]" [] synonym: "self-scratching" EXACT [] is_a: NBO:0000057 ! scratching is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:21:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000432 name: acoustic startle reflex namespace: behavior_ontology def: "An action or movement due to the application of a sudden unexpected loud noise." [] {source="NBO:GVG"} is_a: NBO:0000391 ! startle reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:31:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000433 name: withdrawal reflex namespace: behavior_ontology def: "A reflex where the body reacts to pain or unpleasant stimuli by trying to move itself away from the source." [] {source="NBO:GVG"} synonym: "flexor withdrawal reflex" EXACT [] synonym: "nociceptive reflex" EXACT [] is_a: NBO:0000404 ! stretch reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:35:05Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000434 name: crossed extensor reflex namespace: behavior_ontology def: "\"A reflex where the flexors in the withdrawing limb contract and the extensors relax, while in the other limb, the opposite occurs.\" [wikipedia:Crossed_extensor_reflex]" [] is_a: NBO:0000433 ! withdrawal reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:39:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000435 name: acoustic reflex namespace: behavior_ontology def: "\"An involuntary muscle contraction that occurs in the middle ear of mammals in response to high-intensity sound stimuli.\" [wikipedia:Acoustic_reflex]" [] synonym: "attenuation reflex" EXACT [] synonym: "auditory reflex" EXACT [] synonym: "stapedius reflex" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:41:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000436 name: arthrokinetic reflex namespace: behavior_ontology def: "\"A reflex in which joint movement can reflexively cause muscle activation or inhibition.\" [wikpedia:Arthrokinetic_reflex]" [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:42:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000437 name: cough reflex namespace: behavior_ontology def: "\"A reflex by which the body rids the lower respiratory tract of any irritant that enters through the air and less frequently any fluids (drinks) and solids (food) that may spill into the respiratory tract.\" [XX:http\\://www.healthhype.com/cough-reflex-physiology-process-ear-cough-reflexes.html]" [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:45:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000438 name: snout reflex namespace: behavior_ontology def: "\"A pouting or pursing of the lips that is elicited by light tapping of the closed lips near the midline.\" [wikipedia:Snout_reflex]" [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:47:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000439 name: glabellar reflex namespace: behavior_ontology def: "\"A reflex elicited by repetitive tapping on the forehead which result in blinking to the first several taps.\" [wikipedia:Glabellar_reflex]" [] synonym: "glabellar tap sign" EXACT [] is_a: NBO:0000390 ! primitive reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-07T05:48:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000440 name: Golgi tendon reflex namespace: behavior_ontology def: "\"A skeletal muscle contraction causes the muscle to simultaneously lengthen and relax.\" [wikipedia:Golgi_tendon_reflex]" [] synonym: "inverse myotatic reflex" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:01:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000441 name: shivering reflex namespace: behavior_ontology def: "A reflex in which muscle groups around the vital organs begin to shake in small movements in an attempt to create warmth by expending energy." [] {source="wikipedia:Shivering"} comment: The shivering reflex is triggered to maintain homeostasis. is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:05:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000442 name: sternutation namespace: behavior_ontology def: "A reflex in which mucus containing foreign particles or irritants is expelled and the nasal cavity is cleanses." [] {source="wikipedia:Sneeze"} synonym: "sneeze" EXACT [] synonym: "sneezing" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:08:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000443 name: vagovagal reflex namespace: behavior_ontology def: "\"A contraction of muscles in the gastrointestinal tract in response to distension of the tract following consumption of food and drink.\" [wikipedia:Vagus_reflex]" [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:10:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000444 name: eye movement namespace: behavior_ontology is_a: NBO:0000001 ! body part movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:22:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000445 name: tail movement namespace: behavior_ontology is_a: NBO:0000001 ! body part movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:22:13Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000446 name: visual pursuit namespace: behavior_ontology def: "Selective tracking that follows a moving object by eye." [] comment: Original definition: Selectively track a moving object (Source: NBO:GVG). is_a: GO:0007601 ! visual perception is_a: NBO:0000314 ! visual behavior property_value: http://purl.org/dc/elements/1.1/contributor https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:25:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000447 name: locomotor activation behavior namespace: behavior_ontology def: "Activation of locomotory behavior." [] is_a: NBO:0000338 ! kinesthetic behavior relationship: BFO:0000050 NBO:0000013 ! part of locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:27:51Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000448 name: vertical activity namespace: behavior_ontology is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:28:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000449 name: spontaneous movement behavior namespace: behavior_ontology def: "Kinesthetic behavior initiated in the absence of specific sensory input." [] is_a: NBO:0000338 ! kinesthetic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:28:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000450 name: social grooming namespace: behavior_ontology def: "\"Behavior related to the activity in which individuals in a group clean or maintain one another's body or appearance.\" [wikipedia:Social_grooming]" [] synonym: "allo-hygiene behavior" EXACT [] synonym: "allogrooming" EXACT [] synonym: "allohygiene" EXACT [] is_a: NBO:0000011 ! social behavior is_a: NBO:0000027 ! grooming behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:35:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000451 name: personal grooming namespace: behavior_ontology alt_id: NBO:0000058 def: "\"Behavior related to the promotion of personal hygiene.\" [wikipedia:Social_grooming]" [] synonym: "auto-grooming" EXACT [] synonym: "autohygiene" EXACT [] synonym: "preening" EXACT [] synonym: "self-grooming" EXACT [] is_a: NBO:0000027 ! grooming behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:35:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000452 name: awareness namespace: behavior_ontology def: "Behavior related to the state or ability to perceive, to feel, or to be conscious of events, objects or sensory patterns." [] {source="wikipedia:Awareness"} is_a: NBO:0000065 ! consciousness behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:50:34Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000453 name: obsolete behavior related to feelings experiencing namespace: behavior_ontology property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T12:52:15Z" xsd:string is_obsolete: true created_by: George Gkoutos [Term] id: NBO:0000455 name: attention behavior namespace: behavior_ontology def: "The sustained focus of cognitive resources on information while filtering or ignoring extraneous information. Intended to encompass only attention to perceptual stimuli. " [] {source="wikipedia:Attention"} is_a: NBO:0000308 ! sensation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:02:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000456 name: focused attention behavior namespace: behavior_ontology def: "Behavior involving responding discretely to specific visual, auditory or tactile stimuli." [] {source="wikipedia:Attention"} is_a: NBO:0000455 ! attention behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:04:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000457 name: selective attention behavior namespace: behavior_ontology def: "Behavior involving maintaining a behavioral or cognitive set in the face of distracting or competing stimuli." [] {source="wikipedia:Attention"} is_a: NBO:0000455 ! attention behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:05:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000458 name: alternating attention behavior namespace: behavior_ontology def: "Behavior involving mental flexibility that allows individuals to shift their focus of attention and move between tasks having different cognitive requirements." [] {source="wikipedia:Attention"} is_a: NBO:0000455 ! attention behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:05:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000459 name: sustained attention behavior namespace: behavior_ontology def: "Behavior involving maintaining a consistent behavioral response during continuous and repetitive activity." [] {source="wikipedia:Attention"} synonym: "vigilance" EXACT [] is_a: NBO:0000455 ! attention behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:06:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000460 name: divided attention behavior namespace: behavior_ontology def: "Behavior involving responding simultaneously to multiple tasks or multiple task demands." [] {source="wikipedia:Attention"} is_a: NBO:0000455 ! attention behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:08:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000461 name: size constancy behavior namespace: behavior_ontology def: "\"The perception of familiar objects as approximately the same size regardless of their distance from the observer.\" [Jrank:http\\://science.jrank.org/pages/5094/Perception.html]" [] is_a: NBO:0000225 ! perceptual constancy behavior is_a: NBO:0000746 ! spatial perception intersection_of: NBO:0000225 ! perceptual constancy behavior intersection_of: is_about PATO:0000117 ! size property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:15:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000462 name: colour constancy behavior namespace: behavior_ontology def: "\"The perception of a color as constant under changing conditions of illumination.\" [wikipedia:Color_constancy]" [] is_a: NBO:0000225 ! perceptual constancy behavior intersection_of: NBO:0000225 ! perceptual constancy behavior intersection_of: is_about PATO:0000014 ! color relationship: is_about PATO:0000014 ! color property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:16:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000463 name: shape constancy behavior namespace: behavior_ontology def: "The perception of familiar objects as approximately the same shape regardless of their distance or angle of view from the observer." [] {source="NBO:GVG"} is_a: NBO:0000225 ! perceptual constancy behavior is_a: NBO:0000465 ! form perception behavior intersection_of: NBO:0000225 ! perceptual constancy behavior intersection_of: is_about PATO:0000052 ! shape property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:18:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000464 name: perception of motion behavior namespace: behavior_ontology def: "\"Perception relating to the process of inferring the speed and direction of elements in a scene based on visual, vestibular and proprioceptive inputs.\" [wikipedia:Motion_perception]" [] is_a: NBO:0000308 ! sensation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:23:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000465 name: form perception behavior namespace: behavior_ontology def: "\"Perception related to the identification of objects and their distinction from each other.\" [:http\\://science.jrank.org/pages/5094/Perception.html]" [] is_a: NBO:0000308 ! sensation behavior intersection_of: NBO:0000308 ! sensation behavior intersection_of: is_about PATO:0000052 ! shape relationship: is_about PATO:0000052 ! shape property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:25:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000466 name: depth perception behavior namespace: behavior_ontology def: "\"Behavior involving an active reception and coordination of information relating to depth received through the sensory systems in order to perceive the three-dimensionality of the world and objects within it.\" [:erceiving the three-dimensionality of the world and objects Read more\\: Perception - Perceptual Systems\\, Historical Background\\, Innate And Learned - Classical perceptual phenomena\\, Broad theoretical approaches\\, Current research/future developments http\\://science.jrank.org/pages/5094/Perception.html#ixzz1It3oOobp]" [] is_a: NBO:0000746 ! spatial perception intersection_of: NBO:0000308 ! sensation behavior intersection_of: is_about PATO:0001595 ! depth relationship: is_about PATO:0001595 ! depth property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:29:05Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000467 name: distance perception behavior namespace: behavior_ontology def: "Perception of the distance of an object." [] {source="NBO:GVG"} is_a: NBO:0000746 ! spatial perception intersection_of: NBO:0000746 ! spatial perception intersection_of: is_about PATO:0000040 ! distance relationship: is_about PATO:0000040 ! distance property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:31:08Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000468 name: perceptual illusion behavior namespace: behavior_ontology def: "\"Misperception of stimuli, where what is perceived does not correspond to the actual dimensions or qualities of the physical stimulus.\" [jrank:http\\://science.jrank.org/pages/5094/Perception.html]" [] is_a: NBO:0000308 ! sensation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:32:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000469 name: stress related behavior namespace: behavior_ontology def: "\"Behavior related to how the body reacts to a stressor ( a stimulus that causes stress), real or imagined.\" [wikipedia:Stress_(biological)]" [] comment: It refers to the consequence of the failure of an organism to respond adequately to mental, emotional or physical demands, whether actual or imagined. is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:52:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000470 name: behavioral alarm namespace: behavior_ontology def: "\"Behavior related to the identification or realization of a threat or a stressor.\" [wikipedia:Stress_(biological)]" [] is_a: NBO:0000469 ! stress related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T01:55:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000471 name: predator avoidance behavior namespace: behavior_ontology is_a: NBO:0000088 ! acute stress response is_a: NBO:0000127 ! retreat behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:00:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000472 name: behavioral exhaustion namespace: behavior_ontology def: "Behavior related to the depletion of the body resources for coping to stress." [] {source="NBO:GVG"} is_a: NBO:0000469 ! stress related behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:06:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000473 name: rhythmic behavior phenotype namespace: behavior_ontology is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:18:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000474 name: circadian behavior phenotype namespace: behavior_ontology synonym: "pathological circadian behaviour" EXACT [] is_a: NBO:0000473 ! rhythmic behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:19:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000475 name: dyssomnia namespace: behavior_ontology def: "A pathological sleeping behavior related to the initiating or maintaining sleep or of excessive sleepiness and are characterized by a disturbance in the amount, quality, or timing of sleep." [] {source="wikipedia:Dyssomnia"} is_a: NBO:0000419 ! sleeping behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:20:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000476 name: intrinsic sleep disorder namespace: behavior_ontology is_a: NBO:0000475 ! dyssomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:21:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000477 name: hypersomnia namespace: behavior_ontology def: "A dyssomnia characterized by excessive amounts of sleepiness." [] {source="wikipedia:Hypersomnia"} is_a: NBO:0000476 ! intrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:26:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000478 name: periodic limb movement disorder namespace: behavior_ontology def: "\"A dyssomnia where the patient moves limbs involuntarily during sleep, and has symptoms or problems related to the movement.\" [wikipedia:Periodic_limb_movement_disorder]" [] synonym: "nocturnal myoclonus" EXACT [] synonym: "PLMD" EXACT [] is_a: NBO:0000476 ! intrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:27:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000479 name: restless legs syndrome namespace: behavior_ontology def: "\"A dyssomnia characterized by an irresistible urge to move one's body to stop uncomfortable or odd sensations.\" [wikipedia:Restless_legs_syndrome]" [] synonym: "RLS" EXACT [] synonym: "Wittmaack Ekbom syndrome" EXACT [] is_a: NBO:0000476 ! intrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:28:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000480 name: sleep apnea namespace: behavior_ontology def: "\"A sleep breathing disorder characterized by abnormal pauses in breathing or instances of abnormally low breathing, during sleep.\" [wikipedia:Sleep_apnea]" [] synonym: "sleep apnoea" EXACT [] is_a: NBO:0000494 ! sleep breathing disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:30:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000481 name: sleep state misperception namespace: behavior_ontology def: "\"A dyssomnia characterized by a mistakenly perception of one's sleep as wakefulness.\" [wikipedia:Sleep_state_misperception]" [] synonym: "paradoxical insomnia" EXACT [] synonym: "pseudo-insomnia" EXACT [] synonym: "sleep hypochondriasis" EXACT [] synonym: "SSM" EXACT [] synonym: "subjective insomnia" EXACT [] synonym: "subjective sleepiness" EXACT [] is_a: NBO:0000476 ! intrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:31:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000482 name: extrinsic sleep disorder namespace: behavior_ontology is_a: NBO:0000475 ! dyssomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:35:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000483 name: alcohol-dependent sleep disorder namespace: behavior_ontology def: "A dyssomnia associated with alcohol intake." [] {source="NBO:GVG"} is_a: NBO:0000482 ! extrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:36:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000484 name: food allergy insomnia namespace: behavior_ontology def: "A insomnia associated with food allergies." [] {source="NBO:GVG"} is_a: NBO:0000482 ! extrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:37:51Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000485 name: circadian rhythm sleep disorder namespace: behavior_ontology def: "\"A pathological circadian behavior primarily related to the timing of sleep.\" [wikipedia:Circadian_rhythm_sleep_disorder]" [] is_a: NBO:0000474 ! circadian behavior phenotype is_a: NBO:0000475 ! dyssomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:38:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000486 name: extrinsic circadian rhythm sleep disorder namespace: behavior_ontology def: "\"An extrinsic circadian rhythm sleep disorder characterized by insomnia and excessive sleepiness affecting people whose work hours are scheduled during the typical sleep period.\" [wikipedia:Shift_work_sleep_disorder]" [] is_a: NBO:0000485 ! circadian rhythm sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:54:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000487 name: intrinsic circadian rhythm sleep disorder namespace: behavior_ontology is_a: NBO:0000485 ! circadian rhythm sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:54:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000488 name: jet lag namespace: behavior_ontology def: "\"An extrinsic circadian rhythm sleep disorder resulting from rapid long distance transmeridian (east west or west east) travel.\" [wikipedia:Jet_lag]" [] is_a: NBO:0000486 ! extrinsic circadian rhythm sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:55:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000489 name: shift work sleep disorder namespace: behavior_ontology synonym: "SWSD" EXACT [] is_a: NBO:0000486 ! extrinsic circadian rhythm sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T02:57:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000490 name: advanced sleep phase syndrome namespace: behavior_ontology def: "\"A circadian rhythm sleep disorder characterized by difficulty staying awake in the evening and staying asleep in the morning.\" [wikipedia:Advanced_sleep_phase_syndrome]" [] synonym: "advanced sleep-phase type" EXACT [] synonym: "ASPS" EXACT [] synonym: "ASPT" EXACT [] is_a: NBO:0000487 ! intrinsic circadian rhythm sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:00:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000491 name: non-24-hour sleep-wake syndrome namespace: behavior_ontology def: "\"A circadian rhythm sleep disorder which the affected individual's sleep occurs later and later each day, with the period of peak alertness also continuously moving around the clock from day to day.\" [wikipedia:Circadian_rhythm_sleep_disorder]" [] synonym: "circadian rhythm sleep disorder, free running type" EXACT [] synonym: "circadian rhythm sleep disorder, nonentrained type" EXACT [] synonym: "free running disorder (FRD)" EXACT [] synonym: "hypernychthemeral syndrome" EXACT [] synonym: "non-24" EXACT [] synonym: "non-24-hour circadian rhythm disorder" EXACT [] synonym: "non-24-hour sleep-wake disorder" EXACT [] is_a: NBO:0000487 ! intrinsic circadian rhythm sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:11:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000492 name: irregular sleep-wake rhythm namespace: behavior_ontology def: "\"A circadian rhythm sleep disorder characterized by numerous naps throughout the 24-hour period, no main night time sleep episode and irregularity from day to day.\" [wikipedia:Irregular_sleep-wake_rhythm]" [] is_a: NBO:0000487 ! intrinsic circadian rhythm sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:16:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000493 name: parasomnia namespace: behavior_ontology def: "A sleeping behavior phenotype that involve abnormal and unnatural movements, emotions, perceptions, and dreams that occur while falling asleep, sleeping, between sleep stages, or during arousal from sleep." [] {source="wikipedia:Parasomnia"} is_a: NBO:0000419 ! sleeping behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:20:06Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000494 name: sleep breathing disorder namespace: behavior_ontology def: "An intrinsic sleep disorder characterised by breathing abnormalities." [] {source="NBO:GVG"} synonym: "SBD" EXACT [] is_a: NBO:0000476 ! intrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:27:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000495 name: snoring namespace: behavior_ontology def: "A sleeping behavior characterised by vibration of respiratory structures and the resulting sound, due to obstructed air movement during breathing while sleeping." [] {source="wikipedia:Snoring"} is_a: NBO:0000024 ! sleeping behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:28:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000496 name: upper airway resistance syndrome namespace: behavior_ontology def: "\"A sleep breathing disorder characterized by airway resistance to breathing during sleep.\" [wikipedia:Upper_airway_resistance_syndrome]" [] is_a: NBO:0000494 ! sleep breathing disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:30:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000497 name: recurrent hypersomnia namespace: behavior_ontology def: "A hypersomnia characterized by recurrent episodes." [] {source="NBO:GVG"} is_a: NBO:0000477 ! hypersomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:32:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000498 name: posttraumatic hypersomnia namespace: behavior_ontology def: "A hypersomnia that occurs as a result of a traumatic event involving the central nervous system." [] {source="NBO:GVG"} is_a: NBO:0000477 ! hypersomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:32:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000499 name: NREM parasomnia namespace: behavior_ontology def: "A type of parasomnia that occurs during NREM sleep." [] {source="NBO:GVG"} is_a: NBO:0000493 ! parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-08T03:37:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000500 name: sleepwalking namespace: behavior_ontology def: "A NREM parasomnia characterised by the risef rom the slow wave sleep stage in a state of low consciousness and perform activities that are usually performed during a state of full consciousness." [] {source="wikipedia:Sleepwalking"} synonym: "somnambulism" EXACT [] is_a: NBO:0000499 ! NREM parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T09:32:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000501 name: nocturnal enuresis namespace: behavior_ontology def: "A NREM parasomnia characterised by involuntary urination while asleep after the age at which bladder control usually occurs." [] {source="wikipedia:Bedwetting"} synonym: "bedwetting" EXACT [] is_a: NBO:0000499 ! NREM parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T09:39:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000502 name: somniloquy namespace: behavior_ontology def: "A NREM parasomnia characterised by talking during sleep." [] {source="NBO:GVG"} synonym: "sleep-talking" EXACT [] is_a: NBO:0000499 ! NREM parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:02:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000503 name: REM sleep behavior disorder namespace: behavior_ontology def: "\"A REM parasomnia characterised by the lack of muscle atonia during sleep.\" [wikipedia:REM_Sleep_Behavior_Disorder]" [] synonym: "RBD" EXACT [] is_a: NBO:0000504 ! REM parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:06:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000504 name: REM parasomnia namespace: behavior_ontology def: "A type of parasomnia that occurs during REM sleep." [] {source="NBO:GVG"} is_a: NBO:0000493 ! parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:07:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000505 name: acute RBD namespace: behavior_ontology def: "A RBD that occurs mostly as a result of a side-effect in prescribed medication- usually antidepressants." [] {source="wikipedia:Parasomnia"} is_a: NBO:0000503 ! REM sleep behavior disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:10:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000506 name: chronic RBD namespace: behavior_ontology def: "Idiopathic or associated with neurological disorders REM sleep behavior disorder." [] {source="wikipedia:Parasomnia"} is_a: NBO:0000503 ! REM sleep behavior disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:11:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000507 name: catathrenia namespace: behavior_ontology def: "A REM parasomnia consisting of breath holding and expiratory groaning during sleep that is distinct from both somniloquy and obstructive sleep apnea." [] {source="wikipedia:Catathrenia"} is_a: NBO:0000504 ! REM parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:13:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000508 name: recurrent isolated sleep paralysis namespace: behavior_ontology def: "\"An isolted sleep paralysis that is characterized by frequent episodes or a complex of sequential episodes whose total duration may exceed one hour, and particularly by the range and sense of perceived reality of the subjective phenomena experienced during episodes.\" [web:http\\://www.theconsciousdreamer.org/SSE.HTM]" [] synonym: "RISP" EXACT [] is_a: NBO:0000509 ! isolated sleep paralysis property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:14:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000509 name: isolated sleep paralysis namespace: behavior_ontology def: "\"A sleep paralaysis characterised by the absence of narcolepsy.\" [wikipedia:Sleep_paralysis]" [] synonym: "ISP" EXACT [] is_a: NBO:0000510 ! sleep paralysis property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:20:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000510 name: sleep paralysis namespace: behavior_ontology def: "\"A REM parasomnia characterised by periods of inability to perform voluntary movements either when going to sleep or when waking up.\" [wikipedia:Sleep_paralysis]" [] is_a: NBO:0000032 ! paralysis is_a: NBO:0000504 ! REM parasomnia property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:24:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000511 name: hypnagogic sleep paralysis namespace: behavior_ontology def: "\"A sleep paralysis which upon falling asleep the person remains aware while the body shuts down for REM sleep.\" [wikipedia:Sleep_paralysis]" [] synonym: "predormital sleep paralysis" EXACT [] is_a: NBO:0000510 ! sleep paralysis property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:25:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000512 name: hypnopompic sleep paralysis namespace: behavior_ontology def: "\"A sleep paralysis which upon awakening, the person becomes aware before the REM cycle is complete,.\" [wikipedia:Sleep_paralysis]" [] synonym: "postdormital sleep paralysis" EXACT [] is_a: NBO:0000510 ! sleep paralysis property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:28:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000513 name: climbing stairs namespace: behavior_ontology def: "Behavior related to the ascending stairs." [] {source="NBO:GVG"} is_a: NBO:0000368 ! climbing behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T10:51:13Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000514 name: hypnophobia namespace: behavior_ontology def: "A dyssomnia characterised by fear of sleep." [] {source="NBO:GVG"} synonym: "somniphobia" EXACT [] is_a: NBO:0000476 ! intrinsic sleep disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T11:20:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000515 name: depressive disorder namespace: behavior_ontology alt_id: NBO:0000523 synonym: "DD-NOS" EXACT [] synonym: "depressive disorder not otherwise specified" EXACT [] xref: HP:0000716 is_a: NBO:0000256 ! mood disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-09T12:28:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000516 name: atypical depression namespace: behavior_ontology def: "\"A major depressive disorder characterized by mood reactivity (paradoxical anhedonia) and positivity, significant weight gain or increased appetite (\\\"comfort eating\\\"), excessive sleep or somnolence (hypersomnia), a sensation of heaviness in limbs known as leaden paralysis, and significant social impairment as a consequence of hypersensitivity to perceived interpersonal rejection.\" [wikipedia:Atypical_depression]" [] synonym: "AD" EXACT [] is_a: NBO:0000257 ! major depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T12:55:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000517 name: melancholic depression namespace: behavior_ontology def: "\"A major depressive disorder characterized by a loss of pleasure (anhedonia) in most or all activities, a failure of reactivity to pleasurable stimuli, a quality of depressed mood more pronounced than that of grief or loss, a worsening of symptoms in the morning hours, early morning waking, psychomotor retardation, excessive weight loss (not to be confused with anorexia nervosa), or excessive guilt.\" [wikipedia:Melancholic_depression]" [] is_a: NBO:0000257 ! major depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T12:57:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000518 name: psychotic major depression namespace: behavior_ontology def: "\"A major depressive disorder characterized by a major depressive episode, particularly of melancholic nature, where the patient experiences psychotic symptoms such as delusions or, less commonly, hallucinations.\" [wikipedia:Psychotic_major_depression]" [] synonym: "PMD" EXACT [] is_a: NBO:0000257 ! major depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T12:58:44Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000519 name: catatonic depression namespace: behavior_ontology def: "A major depressive disorder characterized by psychological and motorological disturbances." [] {source="wikipedia:Catatonia"} is_a: NBO:0000257 ! major depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:01:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000520 name: postpartum depression namespace: behavior_ontology def: "\"A major depressive disorder characterized by a intense, sustained and sometimes disabling depression experienced by women after giving birth.\" [wikipedia:Postpartum_depression]" [] synonym: "PDD" EXACT [] synonym: "postnatal depression" EXACT [] is_a: NBO:0000257 ! major depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:03:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000521 name: seasonal affective disorder namespace: behavior_ontology def: "\"A major depressive disorder usually characterized seasonal pattern with depressive episodes coming on in the winter or summer, spring or autumn, repeatedly, year after year.\" [wikipedia:Seasonal_affective_disorder]" [] synonym: "winter blues" EXACT [] synonym: "winter depression" EXACT [] is_a: NBO:0000257 ! major depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:10:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000522 name: dysthymia namespace: behavior_ontology def: "A depressive disorder characterized by chronic, different mood disturbance." [] {source="wikipedia:Dysthymia"} comment: For humans: where a person reports a low mood almost daily over a span of at least two years. is_a: NBO:0000515 ! depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:13:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000524 name: recurrent brief depression namespace: behavior_ontology def: "\"A depressive disorder characterized by intermittent depressive episodes, in women not related to menstrual cycles, occurring at least once a month over at least one year or more fulfilling the diagnostic criteria for major depressive episodes except for duration which in RBD is less than 14 days, typically 2 to 4 days.\" [wikipedia:Recurrent_brief_depression]" [] synonym: "RBD" EXACT [] is_a: NBO:0000515 ! depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:17:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000525 name: minor depressive disorder namespace: behavior_ontology def: "\"A depressive disorder that does not meet full criteria for Major depressive disorder but in which at least two depressive symptoms are present for two weeks.\" [wikipedia:Minor_Depressive_Disorder]" [] synonym: "minor depression" EXACT [] is_a: NBO:0000515 ! depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:19:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000526 name: bipolar I namespace: behavior_ontology def: "\"A type of bipolar disorder distinguished by the presence or history of one or more manic episodes or mixed episodes with or without major depressive episodes.\" [wikipedia:Bipolar_I]" [] is_a: NBO:0000258 ! bipolar disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:25:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000527 name: bipolar II namespace: behavior_ontology def: "\"A bipolar disorder characterised by recurrent intermittent hypomanic and depressive episodes.\" [wikipedia:Mood_disorder]" [] is_a: NBO:0000258 ! bipolar disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:26:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000528 name: cyclothymia namespace: behavior_ontology def: "A bipolar disorder characterised by recurrent hypomanic and dysthymic episodes, but no full manic episodes or full major depressive episodes." [] {source="wikipedia:Cyclothymia"} is_a: NBO:0000258 ! bipolar disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:27:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000529 name: bipolar disorder not otherwise specified namespace: behavior_ontology def: "\"A bipolar disorder characterised by symptoms in the bipolar spectrum (e.g. manic and depressive symptoms) but does not fully qualify for any of the three types of bipolar disorder.\" [wikipedia:Bipolar_Disorder_Not_Otherwise_Specified]" [] synonym: "BD-NOS" EXACT [] is_a: NBO:0000258 ! bipolar disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:28:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000530 name: substance induced mood disorder namespace: behavior_ontology is_a: NBO:0000256 ! mood disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:33:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000531 name: alcohol induced mood disorder namespace: behavior_ontology is_a: NBO:0000530 ! substance induced mood disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:34:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000532 name: benzodiazepine induced mood disorder namespace: behavior_ontology is_a: NBO:0000530 ! substance induced mood disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:34:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000533 name: Interferon-alpha induced mood disorder namespace: behavior_ontology is_a: NBO:0000530 ! substance induced mood disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:34:41Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000534 name: post-traumatic stress namespace: behavior_ontology def: "\"A pathological anxiety which results from a traumatic experience.\" [wikipedia:Post-traumatic_stress_disorder]" [] synonym: "post-traumatic stress disorder" EXACT [] synonym: "PTSD" EXACT [] is_a: NBO:0000244 ! pathological anxiety property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:42:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000535 name: separation anxiety namespace: behavior_ontology def: "\"A pathological anxiety characterized by feeling of excessive and inappropriate levels of anxiety over being separated from a person or place.\" [wikipedia:Separation_anxiety_disorder]" [] synonym: "SepAD" EXACT [] is_a: NBO:0000244 ! pathological anxiety property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T01:44:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000536 name: circadian regulation of heart rate namespace: behavior_ontology def: "Any process in which an organism modulates its heart rate at different values with a regularity of approximately 24 hours." [] {source="GOC:rl"} xref: GO:0003053 is_a: NBO:0000084 ! circadian behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T02:18:47Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000537 name: circadian regulation of systemic arterial blood pressure namespace: behavior_ontology def: "\"Any process in which an organism modulates its blood pressure at different values with a regularity of approximately 24 hours.\" [GO:GO\\:0003052]" [] is_a: NBO:0000084 ! circadian behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T02:21:01Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000538 name: circadian temperature homeostasis namespace: behavior_ontology def: "Any homeostatic process in which an organism modulates its internal body temperature at different values with a regularity of approximately 24 hours." [] {source="GOC:dbh"} synonym: "circadian thermoregulation" EXACT [] is_a: NBO:0000051 ! thermoregulation behavior is_a: NBO:0000084 ! circadian behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T02:22:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000539 name: eating behavior phenotype namespace: behavior_ontology def: "Observable characteristic of feeding behavior that relates to eating." [] {source="NBO:GVG"} synonym: "eating disorder" EXACT [] is_a: NBO:0000270 ! feeding behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:39:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000540 name: drinking behavior phenotype namespace: behavior_ontology def: "Observable characteristic of feeding behavior that relates to drinking." [] {source="NBO:GVG"} synonym: "drinking disorder" EXACT [] synonym: "pathological drinking behaviour" EXACT [] is_a: NBO:0000270 ! feeding behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:40:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000541 name: dipsosis namespace: behavior_ontology def: "A pathological drinking behavior characterised by an excessive desire to drink." [] {source="NBO:GVG"} xref: MP:0002119 is_a: NBO:0000961 ! increased frequency of drinking property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:41:10Z" xsd:string property_value: note "'participates in' some \n('regulation of drinking behavior' and (has_quality some \n('increased frequency' and towards some 'liquid consumption' and owl:qualifier some chronic)))" xsd:string created_by: George Gkoutos [Term] id: NBO:0000542 name: polydipsia namespace: behavior_ontology def: "A pathological drinking behavior characterised by large intake of fluids by mouth, usually due to excessive thirst that is relatively prolonged." [] {source="NBO:GVG"} xref: HP:0001959 xref: MP:0001426 is_a: NBO:0000540 ! drinking behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:41:10Z" xsd:string property_value: note "'participates in' some (\n'regulation of drinking behavior' and regulates some \n ('liquid consumption' and has-input some ('liquid substance' and has_quality some 'increased mass')) \nand \nowl:qualifier some 'temporally extended')" xsd:string created_by: George Gkoutos [Term] id: NBO:0000543 name: hyperdipsia namespace: behavior_ontology def: "A pathological drinking behavior characterised by an excessive relative temporal desire to drink." [] {source="NBO:GVG"} xref: MP:0005111 is_a: NBO:0000961 ! increased frequency of drinking property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:41:10Z" xsd:string property_value: note "'participates in' some \n('regulation of drinking behavior' and (has_quality some \n('increased frequency' and (towards some 'liquid consumption') and (owl:qualifier some 'temporally extended'))))" xsd:string created_by: George Gkoutos [Term] id: NBO:0000544 name: aphagia namespace: behavior_ontology def: "A pathological feeding behavior characterised by failure to eat." [] {source="NBO:GVG"} xref: MP:0001438 is_a: NBO:0000539 ! eating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:41:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000545 name: swallowing namespace: behavior_ontology def: "The act of moving food from the mouth cavity to the esophagus through coordinated muscular movements [NBO:AC]" [] synonym: "swallow" EXACT [] is_a: NBO:0000079 ! feeding behavior relationship: BFO:0000050 GO:0007631 ! part of feeding behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:39:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000546 name: polyphagia namespace: behavior_ontology def: "A pathological eating behavior characterised by an abnormally large intake of food by mouth, usually due to excessive hunger that is relatively prolonged." [] {source="NBO:GVG"} synonym: "hyperphagia" EXACT [] xref: HP:0000724 xref: MP:0001433 is_a: NBO:0000539 ! eating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:41:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000547 name: anhedonia namespace: behavior_ontology def: "Lack of ability to enjoy a sense of pleasure." [] {source="NBO:GVG"} xref: MP:0009710 is_a: NBO:0000522 ! dysthymia property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:41:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000548 name: male sexual activity namespace: behavior_ontology def: "Behaviour related to the male activity which primary purpose is the sexual reproduction." [] {source="NBO:GVG"} is_a: NBO:0000034 ! sexual activity property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:41:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000549 name: female sexual activity namespace: behavior_ontology def: "Behaviour related to the female activity which primary purpose is the sexual reproduction." [] {source="NBO:GVG"} is_a: NBO:0000034 ! sexual activity property_value: http://purl.org/dc/elements/1.1/date "2011-04-10T10:41:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000550 name: recognition memory namespace: behavior_ontology def: "\"Ability to correctly remember something that has been encountered before.\" [wikipedia:Recognition_memory]" [] is_a: NBO:0000185 ! declarative memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:53:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000551 name: visual object recognition namespace: behavior_ontology def: "\"Ability to perceive the physical properties of an object (such as shape, colour and texture) and apply semantic attributes to the object, which includes the understanding of its use, previous experience with the object and how it relates to others.\" [wikipedia:Cognitive_Neuroscience_of_Visual_Object_Recognition]" [] is_a: NBO:0000550 ! recognition memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:56:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000552 name: long term object recognition memory namespace: behavior_ontology def: "A visual object recognition that lasts hours to months and critically depends on a transfer of the information from short term object recognition memory using repeated rehearsals." [] {source="NBO:GVG"} is_a: NBO:0000551 ! visual object recognition property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T02:02:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000553 name: short term object recognition memory namespace: behavior_ontology is_a: NBO:0000554 ! visual short term memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T02:03:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000554 name: visual short term memory namespace: behavior_ontology is_a: NBO:0000180 ! short-term memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T02:09:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000555 name: spatial working memory namespace: behavior_ontology is_a: NBO:0000180 ! short-term memory is_a: NBO:0000556 ! spatial memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T02:10:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000556 name: spatial memory namespace: behavior_ontology def: "\"A type of memory responsible for recording information about one's environment and its spatial orientation.\" [wikipedia:Spatial_memory]" [] is_a: NBO:0000306 ! memory storage behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T02:14:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000557 name: short term spatial memory namespace: behavior_ontology def: "\"A type of memory that allows one to temporarily store and manage information about one's environment and its spatial orientation.\" [wikipedia:Spatial_memory]" [] is_a: NBO:0000556 ! spatial memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T02:17:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000558 name: long term spatial memory namespace: behavior_ontology is_a: NBO:0000185 ! declarative memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T02:19:43Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000559 name: maternal grooming namespace: behavior_ontology def: "Behavior related to the activity in which a mother cleans or maintains the body or the appearance of her offsprings." [] {source="NBO:GVG"} is_a: NBO:0000152 ! maternal nurturing behavior is_a: NBO:0000450 ! social grooming property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T07:58:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000560 name: barbering behavior namespace: behavior_ontology def: "Behavior relating to the plucking of fur/hair or whiskers/vibrissae." [] {source="NBO:GVG"} is_a: NBO:0000027 ! grooming behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:03:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000561 name: hetero-barbering namespace: behavior_ontology alt_id: NBO:0000083 def: "Behavior related to the barbering of other individuals of a cohort." [] {source="NBO:GVG"} synonym: "whisker trimming" EXACT [] xref: MP:0001446 is_a: NBO:0000560 ! barbering behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:04:13Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000562 name: self-barbering namespace: behavior_ontology def: "Behavior related to the barbering of oneself." [] {source="NBO:GVG"} is_a: NBO:0000560 ! barbering behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:05:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000563 name: catalepsy namespace: behavior_ontology def: "A pathological behavior characterized by muscular rigidity and fixation of posture regardless of external stimuli, as well as decreased sensitivity to pain." [] {source="wikipedia:Catalepsy"} xref: MP:0002822 is_a: NBO:0000595 ! posture phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:14:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000564 name: social behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior that occurs predominantly or only, in individuals that are part of a group." [] {source="NBO:GVG"} synonym: "pathological social behaviour" EXACT [] is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:24:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000565 name: social withdrawal namespace: behavior_ontology xref: MP:0001361 is_a: NBO:0000564 ! social behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:24:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000566 name: social withdrawal in childhood namespace: behavior_ontology is_a: NBO:0000565 ! social withdrawal property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:25:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000567 name: stereotypic behavior namespace: behavior_ontology def: "A pathological behavior associated with repetitive or ritualistic movement, posture, or utterance." [] {source="wikipedia:Stereotypy"} synonym: "stereotypic behaviour" EXACT [] synonym: "stereotypy" EXACT [] xref: HP:0000733 xref: MP:0001408 is_a: NBO:0000644 ! voluntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:28:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000568 name: kinesthetic behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the movement of the body's muscles, tendons, and joints." [] {source="NBO:GVG"} is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:31:34Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000569 name: fatigue namespace: behavior_ontology def: "Exhibiting abnormal exhaustion due to mental or physical exertion." [] {source="NBO:GVG"} xref: MP:0002899 is_a: NBO:0000644 ! voluntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:32:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000570 name: head bobbing namespace: behavior_ontology def: "Movement of the head in the vertical plane. [NBO:GVG]" [] synonym: "head nodding" EXACT [] synonym: "nod head" EXACT [] is_a: NBO:0000020 ! head movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:39:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000571 name: multidirectional head movement namespace: behavior_ontology def: "Movement of the head in multiple directions." [] {source="NBO:GVG"} is_a: NBO:0000020 ! head movement property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T08:43:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000572 name: senility namespace: behavior_ontology def: "\"A degenerative state of the brain resulting in impairment of memory, judgment, attention span, problem solving skills, the inability to perform previously learned skills that cannot be attributed to deficits of motor or sensory function, and a global loss of cognitive abilities.\" [MeSH:National Library of Medicine_Medical Subject Headings]" [] xref: MP:0002571 is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T09:01:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000573 name: behavioral despair namespace: behavior_ontology xref: MP:0002573 is_a: NBO:0000515 ! depressive disorder property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T09:04:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000574 name: optokinetic reflex namespace: behavior_ontology def: "\"A reflex allows the eye to follow objects in motion when the head remains stationary.\" [wikipedia:Optokinetic_reflex]" [] is_a: NBO:0000411 ! cranial nerve related reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T09:20:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000575 name: pilomotor reflex namespace: behavior_ontology def: "\"A reflex that elucidates goose bumps (bumps on a person's skin at the base of body hairs) which may involuntarily develop when a person is cold or experiences strong emotions such as fear, awe, admiration or sexual arousal\" [wikipedia:Goose_bumps]" [] synonym: "horripilation" EXACT [] synonym: "piloerection" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:15:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000576 name: pinna reflex namespace: behavior_ontology def: "A reflex that elucidates a characteristic ear twitch in response to an auditory stimulus." [] {source="NBO:GVG"} synonym: "Preyer's reflex" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:19:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000577 name: postural reflex namespace: behavior_ontology def: "A reflex that maintains body position and equilibrium either during rest or during movement." [] {source="NBO:GVG"} is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:24:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000578 name: righting reflex namespace: behavior_ontology def: "A reflex process in which an animal immediately tries to turn over after being placed in a supine position." [] {source="NBO:GVG"} synonym: "righting response" EXACT [] is_a: NBO:0000577 ! postural reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:28:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000579 name: hyperekplexia namespace: behavior_ontology def: "A pathological behavior characterised by pronounced startle responses to tactile or acoustic stimuli and hypertonia." [] {source="wikipedia:Hyperekplexia"} is_a: NBO:0000005 ! reflexive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:37:34Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000580 name: tonic neck reflex namespace: behavior_ontology def: "\"A reflex that elucidates an automatic positioning of the limbs in response to a movement of the head on trunk (neck).\" [web:http\\://www.dizziness-and-balance.com/anatomy/vspine.htm]" [] synonym: "cervicospinal reflex" EXACT [] synonym: "TNR" EXACT [] is_a: NBO:0000577 ! postural reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:42:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000581 name: vestibulocollic reflex namespace: behavior_ontology def: "A reflex which results from activation of afferents from the vestibular organs and uses neck movements to stabilize the head position in space." [] {source="JAX:"} synonym: "VCR" EXACT [] is_a: NBO:0000577 ! postural reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:44:18Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000582 name: vestibulospinal reflex namespace: behavior_ontology def: "A reflex that originates with vestibular stimulation and control body posture." [] {source="NBO:GVG"} is_a: NBO:0000577 ! postural reflex property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:47:03Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000583 name: vibrissae reflex namespace: behavior_ontology def: "\"Change position in response to stimulation of the whiskers.\" [JAX:]" [] synonym: "vibrissa reflex" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:52:19Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000584 name: clutching reflex namespace: behavior_ontology def: "A mouse reflex that elicidated the clasping of front and/or hind feet almost immediately upon being lifted by tail." [] {source="EUROPHENOME:"} synonym: "hindlimb extension reflex" EXACT [] synonym: "limb clasping" EXACT [] synonym: "limb grasping" EXACT [] is_a: NBO:0000389 ! reflexive behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T10:55:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000585 name: emprosthotonos namespace: behavior_ontology def: "A form of tetanic spasm in which the head and feet are drawn forward and the spine arches backward." [] {source="JAX:"} xref: MP:0009354 is_a: NBO:0000587 ! tetanic spasm property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:05:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000586 name: opisthotonus namespace: behavior_ontology def: "A form of tetanic spasm in which the head, neck and spine are bent backward and the body is bowed forward." [] {source="JAX:"} xref: HP:0002179 xref: MP:0002880 is_a: NBO:0000587 ! tetanic spasm property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:08:01Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000587 name: tetanic spasm namespace: behavior_ontology def: "A sudden, involuntary contraction of a muscle or group of muscles associated with strychnine poisoning and tetanus." [] {source="NBO:GVG"} is_a: NBO:0000588 ! spasm property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:09:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000588 name: spasm namespace: behavior_ontology def: "A sudden, involuntary contraction of a muscle or group of muscles." [] {source="NBO:GVG"} is_a: NBO:0000643 ! involuntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:10:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000589 name: tremor namespace: behavior_ontology def: "An involuntary rhythmical, oscillatory movement of a body part." [] {source="NBO:GVG"} synonym: "quivering" EXACT [] synonym: "shivering" EXACT [] synonym: "trembling" EXACT [] xref: HP:0001337 xref: MP:0000745 is_a: NBO:0000643 ! involuntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:13:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000590 name: ataxia namespace: behavior_ontology def: "Inability to coordinate voluntary muscular movements." [] {source="NBO:GVG"} xref: HP:0001251 xref: MP:0001393 is_a: NBO:0000591 ! motor coordination phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:25:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000591 name: motor coordination phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the coordination of combinations of body movements created with the kinematic (such as spatial direction) and kinetic (force) parameters that result in intended actions." [] {source="NBO:GVG"} is_a: NBO:0000229 ! vestibular behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:32:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000592 name: dysmetria namespace: behavior_ontology def: "Lack of coordination of movement typified by the undershoot or overshoot of intended position with the hand, arm, leg, or eye." [] {source="wikipedia:Dysmetria"} xref: MP:0003314 is_a: NBO:0000591 ! motor coordination phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:33:13Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000593 name: hypermetria namespace: behavior_ontology def: "Overshooting the intended position." [] {source="wikipedia:Dysmetria"} is_a: NBO:0000592 ! dysmetria property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:34:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000594 name: hypometria namespace: behavior_ontology def: "Undershooting the intended position." [] {source="wikipedia:Dysmetria"} is_a: NBO:0000592 ! dysmetria property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:34:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000595 name: posture phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related with the Intentionally or habitually assumed arrangement of the body and its limbs." [] {source="NBO:GVG"} is_a: NBO:0000229 ! vestibular behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:37:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000596 name: titubation namespace: behavior_ontology def: "\"Posture distinguished by a faltering gait while walking and/or a swaying motion of the trunk or head while resting.\" [JAX:]" [] xref: MP:0009514 is_a: NBO:0000595 ! posture phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T11:37:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000597 name: hindlimb paralysis namespace: behavior_ontology def: "Loss of power of voluntary movement in the muscles of the hindlimb through injury or disease of it or its nerve supply." [] {source="JAX:"} xref: MP:0000755 is_a: NBO:0000032 ! paralysis property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:20:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000598 name: dystonia namespace: behavior_ontology def: "A locomotory disorder in which sustained muscle contractions cause twisting and repetitive movements or abnormal postures." [] {source="wikipedia:Dystonia"} xref: HP:0001332 xref: MP:0005323 is_a: NBO:0000009 ! locomotory behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:24:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000599 name: long-term spatial memory namespace: behavior_ontology def: "A type of memory that allows one to store and manage information about one's environment and its spatial orientation lasting hours to months." [] {source="NBO:GVG"} is_a: NBO:0000556 ! spatial memory property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T01:43:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000600 name: psychomotor agitation behavior namespace: behavior_ontology def: "\"Agitation characterised by a series of unintentional and purposeless motions that stem from mental tension and anxiety of an individual.\" [wikipedia:Psychomotor_agitation]" [] is_a: NBO:0000129 ! agitation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:03:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000601 name: emotional behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the complex psychophysiological experience of an individual's state of mind as interacting with biochemical (internal) and environmental (external) influences." [] {source="NBO:GVG"} is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:07:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000602 name: apathy namespace: behavior_ontology def: "\"Exhibiting indifference, or suppression of emotions such as concern, excitement, motivation and passion.\" [wikipedia:Indifference_(emotion)]" [] synonym: "impassivity" EXACT [] synonym: "perfunctoriness" EXACT [] xref: HP:0000741 is_a: NBO:0000601 ! emotional behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:07:51Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000603 name: delusion namespace: behavior_ontology def: "A belief that is either mistaken or not substantiated that is held with vehemence." [] {source="wikipedia:Delusion"} xref: HP:0000746 is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:20:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000604 name: social inhibition namespace: behavior_ontology def: "\"A social behavior characterised by conscious or unconscious constraint of a behavior that might be considered objectionable in a social setting.\" [wikipedia:Social_inhibition]" [] is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:33:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000605 name: sexual inhibition namespace: behavior_ontology def: "\"A social behavior characterised by conscious or unconscious constraint or curtailment of behavior relating to specific sexual matters or practices.\" [wikipedia:Sexual_inhibition]" [] is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:34:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000606 name: forgetfulness namespace: behavior_ontology def: "Loss of information already encoded and stored in an individual's long term memory." [] {source="wikipedia:Forgetting"} synonym: "pathological forgetting" EXACT [] synonym: "retention loss" EXACT [] xref: HP:0000747 is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:42:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000607 name: cognitive behavior namespace: behavior_ontology def: "Behaviour related to cognitive processes." [] {source="NBO:JH"} is_a: NBO:0000313 ! behavior process property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:51:13Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000608 name: hallucination namespace: behavior_ontology def: "Perception in the absence of a stimulus." [] {source="wikipedia:Hallucination"} xref: HP:0000738 is_a: NBO:0000308 ! sensation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:52:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000609 name: visual hallucination namespace: behavior_ontology def: "A form of hallucination that involves perceiving images without visual stimulus." [] {source="NBO:GVG"} synonym: "paracusia" EXACT [] xref: HP:0008765 is_a: NBO:0000608 ! hallucination intersection_of: NBO:0000608 ! hallucination intersection_of: by_means UBERON:0002104 ! visual system relationship: by_means UBERON:0002104 ! visual system property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:54:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000610 name: auditory hallucination namespace: behavior_ontology def: "\"A form of hallucination that involves perceiving sounds without auditory stimulus.\" [wikipedia:Auditory_hallucination]" [] xref: HP:0002367 is_a: NBO:0000608 ! hallucination intersection_of: NBO:0000608 ! hallucination intersection_of: by_means UBERON:0002105 ! vestibulo-auditory system relationship: by_means UBERON:0002105 ! vestibulo-auditory system property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:56:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000611 name: olfactory hallucination namespace: behavior_ontology def: "A form of hallucination that involves perceiving odors without odor stimulus." [] {source="NBO:GVG"} synonym: "phantosmia" EXACT [] is_a: NBO:0000608 ! hallucination intersection_of: NBO:0000608 ! hallucination intersection_of: by_means UBERON:0005725 ! olfactory system relationship: by_means UBERON:0005725 ! olfactory system property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T03:58:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000612 name: communication behavior namespace: behavior_ontology def: "A social behavior related to the activity of conveying information." [] {source="wikipedia:Communication"} synonym: "communicating" EXACT [] synonym: "signal exchange" NARROW [] is_a: NBO:0000011 ! social behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T04:39:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000613 name: nonverbal communication behavior namespace: behavior_ontology def: "\"Communication behavior related to the process of conveying meaning in the form of non-word messages through for example gesture, body language or posture; facial expression and eye contact etc.\" [wikipedia:.wikipedia.org/wiki/Nonverbal_communication]" [] synonym: "non-verbal communication behaviour" EXACT [] synonym: "nonverbal communication behaviour" EXACT [] is_a: NBO:0000612 ! communication behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T04:40:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000614 name: visual communication behavior namespace: behavior_ontology def: "\"Communication behavior related to the conveyance of ideas and information through creation of visual representations.\" [wikipedia:Visual_communication]" [] is_a: NBO:0000612 ! communication behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T04:42:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000615 name: oral communication behavior namespace: behavior_ontology def: "\"Communication behavior related to the process of conveying meaning in the form of word messages.\" [wikipedia:Oral_communication#Oral_communication]" [] is_a: NBO:0000612 ! communication behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T04:44:04Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000616 name: eye contact namespace: behavior_ontology def: "\"A nonverbal communication behavior that is characterised by the meeting the eyes between two individuals.\" [wikipedia:Eye_contact]" [] is_a: NBO:0000613 ! nonverbal communication behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T04:46:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000617 name: laughing behavior namespace: behavior_ontology is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T04:51:05Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000618 name: crying behavior namespace: behavior_ontology def: "The behavior in which an organism sheds tears, often accompanied by non-verbal vocalizations and in response to external or internal stimuli." [] {source="NBO:GVG"} synonym: "crying behaviour" EXACT [] xref: GO:0060273 is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T04:52:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000619 name: behavior stemming from insight namespace: behavior_ontology def: "Behavior stemming from understanding of a specific cause and effect in a specific context." [] {source="wikipedia:Insight"} is_a: NBO:0000293 ! behavior stemming from intelligence property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T04:57:19Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000620 name: frustration behavior namespace: behavior_ontology def: "An emotional behavior that arises from the perceived resistance to the fulfillment of individual will." [] {source="wikipedia:Frustration"} is_a: NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T05:00:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000621 name: selective mutism namespace: behavior_ontology def: "\"A communication disorder in which a person, most often a child, who is normally capable of speech is unable to speak in given situations, or to specific people.\" [wikipedia:Selective_mutism]" [] xref: HP:0002300 is_a: NBO:0000564 ! social behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T05:06:03Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000622 name: stereotypic motor behavior namespace: behavior_ontology def: "Any highly repetitive behavior, where the repetition is unusual, difficult to disrupt, and neither the behavior nor repetition serve an obvious function [NBO:AC]" [] xref: HP:0008758 is_a: NBO:0000567 ! stereotypic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T05:18:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000623 name: echolalia namespace: behavior_ontology def: "Stereotypic behavior characterised by a tendency to repeat vocalizations." [] {source="NBO:GVG"} xref: HP:0010529 is_a: NBO:0000567 ! stereotypic behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-14T05:20:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000624 name: object play namespace: behavior_ontology def: "Play behavior associated with the manipulation of objects." [] {source="NBO:GVG"} comment: Object play is important in developing skills important in adulthood, especially hunting. is_a: NBO:0000075 ! playing behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T10:51:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000626 name: sexual play namespace: behavior_ontology def: "\"Behavior associated with interactions which resemble sexual behavior but do not lead to copulation.\" [web:http\\://www.bio.davidson.edu/people/vecase/behavior/Spring2009/Sacco/Pages/Sex%20Play.html]" [] synonym: "love play" EXACT [] is_a: NBO:0000049 ! social play property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T10:52:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000627 name: play fight namespace: behavior_ontology def: "\"Play behavior associated to fighting simulation, although fighting is much slower and gentler with no intention of actual hurt.\" [web:http\\://www.bio.davidson.edu/people/vecase/behavior/Spring2009/Sacco/Pages/Play%20Fighting.html]" [] comment: Play fighting helps learning to evaluate oneself and an opponent. This skill is crucial for serious adult situations. Being able to size up an opponent quickly is very important in knowing when to give up or fight for a resource (food, mate, territory, etc. ). Play fighting is one of the most important categories of play because it prepares animals for actual fighting. is_a: NBO:0000049 ! social play property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T10:53:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000628 name: play chasing namespace: behavior_ontology def: "Play behavior that is associated with the pursuit of an individual." [] {source="NBO:GVG"} is_a: NBO:0000049 ! social play property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T10:54:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000629 name: nursing play namespace: behavior_ontology def: "Play behavior associated with the exhibition of parenting behavior by non-parents." [] {source="NBO:GVG"} is_a: NBO:0000049 ! social play property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T11:03:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000630 name: imitative play namespace: behavior_ontology def: "\"Play behavior related to the copying the actions of another.\" [web:http\\://www.bio.davidson.edu/people/vecase/behavior/Spring2009/Sacco/Pages/Imitative%20Play.html]" [] comment: Imitative play is an excellent means of learning how to perform a task that an adult has perfected. Therefore, imitative play is one of the best ways for animals to learn from the adults in the group. is_a: NBO:0000075 ! playing behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T11:07:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000631 name: mobbing behavior namespace: behavior_ontology def: "Harassment of and-or attack of a presumed predator or intruder by multiple individuals at once [NBO:SMAC]" [] synonym: "mobbing" EXACT [] is_a: NBO:0000087 ! antipredation behavior is_a: NBO:0000741 ! aggressive behavior by means property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T01:44:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000632 name: mobbing calling namespace: behavior_ontology def: "\"Behavior associated with signals made by the mobbing species while harassing a predator.\" [wikipedia:Mobbing_(animal_behavior)]" [] is_a: NBO:0000036 ! behavioral control of production of sound is_a: NBO:0000631 ! mobbing behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T01:46:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000633 name: territorial aggressive behavior namespace: behavior_ontology def: "Aggressive behavior related to the defence of a fixed area against intruders, typically conspecifics." [] {source="GOC:hjd"} synonym: "territorial aggression" EXACT [] synonym: "territorial aggressive behaviour" EXACT [] xref: GO:0002124 is_a: NBO:0000105 ! aggressive behavior towards animals property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T02:02:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000634 name: irritable aggressive behavior namespace: behavior_ontology is_a: GO:0002118 ! aggressive behavior is_a: NBO:0000741 ! aggressive behavior by means intersection_of: GO:0002118 ! aggressive behavior intersection_of: by_means NBO:0000128 ! irritability behavior relationship: by_means NBO:0000128 ! irritability behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T02:05:35Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000635 name: avoidance behavior namespace: behavior_ontology def: "\"Behavior related to the activity seen in animals exposed to adverse stimuli, in which the tendency to act defensively is stronger than the tendency to attack.\" [web:http\\://www.britannica.com/EBchecked/topic/45916/avoidance-behavior]" [] is_a: NBO:0000233 ! motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T03:36:00Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000636 name: protective behavior namespace: behavior_ontology def: "Behavior related to the activity seen in animals exposed to potential danger in which they exhibit the tendency to act defensively." [] {source="NBO:SD"} synonym: "defense" EXACT [] synonym: "defensive behaviour" EXACT [] is_a: NBO:0000635 ! avoidance behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-19T03:49:55Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000637 name: male courtship behavior namespace: behavior_ontology def: "The actions or reactions of a male, for the purpose of attracting a sexual partner." [] {source="GOC:bf"} synonym: "male courtship behaviour" EXACT [] xref: GO:0008049 is_a: NBO:0000077 ! courtship behavior disjoint_from: NBO:0000638 ! female courtship behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-21T08:40:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000638 name: female courtship behavior namespace: behavior_ontology def: "The actions or reactions of a female, for the purpose of attracting a sexual partner." [] {source="GOC:bf"} synonym: "female courtship behaviour" EXACT [] xref: GO:0008050 is_a: NBO:0000077 ! courtship behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-21T08:42:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000639 name: long term thirst regulation namespace: behavior_ontology def: "Any process which modulates the physical craving for water over long term water deprivation." [] {source="NBO:GVG"} is_a: NBO:0000234 ! thirst motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-21T09:06:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000640 name: short term thirst regulation namespace: behavior_ontology def: "Any process which modulates the physical craving for water over short term water deprivation." [] {source="NBO:GVG"} is_a: NBO:0000234 ! thirst motivation behavior property_value: http://purl.org/dc/elements/1.1/date "2011-04-21T09:06:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000641 name: discrimination learning namespace: behavior_ontology is_a: NBO:0000171 ! associative learning behavior property_value: http://purl.org/dc/elements/1.1/date "2011-05-06T03:56:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000642 name: epilepsy namespace: behavior_ontology def: "Two or more unprovoked recurrent seizures." [] {source="NBO:GVG"} synonym: "unprovoked seizure" EXACT [] xref: HP:0001275 is_a: NBO:0000012 ! seizures/epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T11:42:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000643 name: involuntary movement behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to movements that occur independent of planning." [] {source="NBO:GVG"} is_a: NBO:0000568 ! kinesthetic behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T11:56:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000644 name: voluntary movement behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to movements executed with intent." [] {source="NBO:GVG"} is_a: NBO:0000568 ! kinesthetic behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T11:57:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000645 name: convulsion namespace: behavior_ontology def: "A rapid and repeated body muscle contract that results in an uncontrolled shaking of the body." [] {source="NBO:GVG"} synonym: "fit" EXACT [] is_a: NBO:0000643 ! involuntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T11:59:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000646 name: partial seizure namespace: behavior_ontology def: "\"A seizure which affect only a part of the brain at onset.\" [wikipedia:http\\://en.wikipedia.org/wiki/Focal_seizures]" [] comment: Partial seizures begin with an electrical discharge in one limited area of the brain. synonym: "focal seizure" EXACT [] synonym: "localized seizure" EXACT [] xref: HP:0007359 is_a: NBO:0000025 ! seizures property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T12:49:09Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000647 name: simple partial seizure namespace: behavior_ontology def: "\"A partial seizure which affect only a small region of the brain, often the temporal lobes and/or hippocampi whilst consciousness is unaffected.\" [wikipedia:http\\://en.wikipedia.org/wiki/Simple_partial_seizure]" [] comment: Depending on the area of cerebral cortex involved, symptoms may be motor, cognitive, sensory, autonomic, or affective. Consciousness is not impaired. xref: HP:0002349 is_a: NBO:0000646 ! partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T12:51:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000648 name: complex partial seizure namespace: behavior_ontology def: "\"A seizure that is associated with bilateral cerebral hemisphere involvement and causes impairment of awareness or responsiveness, i.e. loss of consciousness.\" [wikipedia:http\\://en.wikipedia.org/wiki/Complex_partial_seizures]" [] synonym: "psychomotor seizure" EXACT [] synonym: "temporal lobe seizure" EXACT [] xref: HP:0002384 xref: MP:0002195 is_a: NBO:0000646 ! partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T12:59:01Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000649 name: being conscious namespace: behavior_ontology is_a: NBO:0000065 ! consciousness behavior property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T01:51:38Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000650 name: temporal lobe epilepsy namespace: behavior_ontology def: "\"A type of focal epilepsy characterized by recurrent seizures.\" [NBO:http\\://en.wikipedia.org/wiki/Temporal_lobe_epilepsy]" [] synonym: "psychomotor epilepsy" EXACT [] is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T02:42:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000651 name: simple partial seizure with motor signs namespace: behavior_ontology def: "A simple partial seizure affecting the kinesthetic behavior." [] {source="NBO:GVG"} synonym: "focal clonic seizure" EXACT [] synonym: "motor seizure" EXACT [] xref: HP:0002266 is_a: NBO:0000647 ! simple partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T02:50:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000652 name: simple partial seizure with sensory symptoms namespace: behavior_ontology def: "A simple partial seizure affecting any of the five senses -- vision, touch, smell, taste, and hearing." [] {source="NBO:GVG"} comment: Some simple partial seizures consist of a sensory experience. The person may see lights, hear a buzzing sound, or feel tingling or numbness in a part of the body. synonym: "Jacksonian sensory seizure" EXACT [] synonym: "sensory seizure" EXACT [] is_a: NBO:0000647 ! simple partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T02:51:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000653 name: simple partial seizure with autonomic symptoms or signs namespace: behavior_ontology def: "A simple partial seizure affecting the part of the nervous system that automatically controls bodily functions." [] {source="NBO:GVG"} comment: These seizures are accompanied by autonomic symptoms or signs, such as abdominal discomfort or nausea which may rise into the throat (epigastric rising), stomach pain, the rumbling sounds of gas moving in the intestines (borborygmi), belching, flatulence and vomiting. Other symptoms may include pallor, flushing, sweating, hair standing on end (piloerection), dilation of the pupils, alterations in heart rate and respiration, and urination. A few people may experience sexual arousal, penile erection, and orgasm. synonym: "abdominal epilepsy" EXACT [] synonym: "autonomic seizure" EXACT [] is_a: NBO:0000647 ! simple partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T02:51:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000654 name: simple partial seizure with psychic symptoms namespace: behavior_ontology def: "A simple partial seizure affecting the emotional behavior." [] {source="NBO:GVG"} comment: Simple partial seizures which arise in or near the temporal lobes often take the form of an odd experience. One may see or hear things that are not there. One feels emotions, often fear, but sometimes sadness, anger, or joy. There may be a bad smell or a bad taste, a funny feeling in the pit of the stomach or a choking sensation. synonym: "psychic seizure" EXACT [] synonym: "simple partial seizures of temporal lobe origin" EXACT [] synonym: "temporal lobe auras" EXACT [] is_a: NBO:0000647 ! simple partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T02:51:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000655 name: sensation behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related any of the five senses -- vision, touch, smell, taste, and hearing." [] {source="NBO:GVG"} is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:06:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000656 name: somatic sensation related behavior phenotype namespace: behavior_ontology def: "A phenotype manifested by a behavior related to the sensations arising from the skin and from the muscles, tendons, and joints." [] {source="NBO:GVG"} is_a: NBO:0000655 ! sensation behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:20:39Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000657 name: cutaneous sensation behavior phenotype namespace: behavior_ontology is_a: NBO:0000656 ! somatic sensation related behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:21:20Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000658 name: auditory behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the actions or reactions of an organism in response to a sound." [] {source="NBO:GVG"} is_a: NBO:0000655 ! sensation behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:22:16Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000659 name: visual behavior phenotype namespace: behavior_ontology def: "A phenotype manifested by a behavior related to the actions or reactions of an organism in response to a visual stimulus." [] {source="NBO:GVG"} is_a: NBO:0000655 ! sensation behavior phenotype is_a: NBO:0000755 ! reproductive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:22:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000660 name: chemosensory behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the sensation of chemicals." [] {source="NBO:GVG"} is_a: NBO:0000655 ! sensation behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:26:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000661 name: olfactory behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the sensation of odors." [] {source="NBO:GVG"} is_a: NBO:0000660 ! chemosensory behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:28:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000662 name: generalized seizure namespace: behavior_ontology def: "A seizure which affect the whole of the brain at onset." [] {source="NBO:GVG"} comment: Primary generalized seizures begin with a widespread electrical discharge that involves both sides of the brain at once. synonym: "primarily generalized seizure" EXACT [] xref: HP:0002197 is_a: NBO:0000025 ! seizures property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:46:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000663 name: partial seizure evolving to secondarily generalized seizure namespace: behavior_ontology xref: HP:0007334 is_a: NBO:0000646 ! partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:49:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000664 name: simple partial seizure evolving to generalized seizure namespace: behavior_ontology is_a: NBO:0000663 ! partial seizure evolving to secondarily generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:50:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000665 name: complex partial seizure evolving to generalized seizure namespace: behavior_ontology is_a: NBO:0000663 ! partial seizure evolving to secondarily generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:50:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000666 name: simple partial seizure evolving to complex partial seizure evolving to generalized seizure namespace: behavior_ontology is_a: NBO:0000663 ! partial seizure evolving to secondarily generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:50:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000667 name: simple partial onset, followed by impairment of consciousness namespace: behavior_ontology is_a: NBO:0000648 ! complex partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:51:50Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000668 name: with impairment of consciousness at onset namespace: behavior_ontology is_a: NBO:0000648 ! complex partial seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:52:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000669 name: absence seizures namespace: behavior_ontology def: "\"An absence seizure is a brief (usually less that 20 seconds), generalized epileptic seizure of sudden onset and termination.\" [wikipedia:http\\://en.wikipedia.org/wiki/Absence_seizure]" [] synonym: "petit mal seizure" EXACT [] xref: HP:0002121 xref: MP:0003216 is_a: NBO:0000662 ! generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:54:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000670 name: atonic seizure namespace: behavior_ontology def: "\"A type of generalized seizure that consist of a brief lapse in muscle tone that are caused by temporary alterations in brain function.\" [wikipedia:http\\://en.wikipedia.org/wiki/Atonic_seizure]" [] synonym: "akinetic seizure" EXACT [] synonym: "drop attack" EXACT [] synonym: "drop seizure" EXACT [] xref: HP:0010819 is_a: NBO:0000662 ! generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T03:57:35Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000671 name: myoclonic seizure namespace: behavior_ontology def: "A type of seizure that is characterised by a very brief symmetric alternating contraction and relaxation of a muscle or a group of muscles." [] {source="NBO:GVG"} comment: Symmetric jerking of the extremities. synonym: "myoclonus" EXACT [] xref: HP:0001336 xref: HP:0002123 xref: MP:0000243 is_a: NBO:0000662 ! generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T04:52:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000672 name: clonic seizure namespace: behavior_ontology def: "A type of seizure that is characterised by rhythmic symmetric alternating contraction and relaxation of a muscle or a group of muscles." [] {source="NBO:GVG"} comment: Rapid, repetitive motor activity. xref: MP:0003996 is_a: NBO:0000662 ! generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T04:54:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000673 name: juvenile myoclonic epilepsy namespace: behavior_ontology def: "A type of epilepsy characterised by myoclonic seizures usually involving the neck, shoulders, and upper arms." [] {source="NBO:GVG"} synonym: "Janz syndrome" EXACT [] is_a: NBO:0000688 ! myoclonic epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T04:55:32Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000674 name: Lennox-Gastaut syndrome namespace: behavior_ontology def: "A type of epilepsy characterised by multiple different types of seizures, particularly including tonic (stiffening) and atonic (drop) types of seizures." [] {source="NBO:GVG"} is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T04:56:28Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000675 name: reflex seizure namespace: behavior_ontology def: "A type of seizure generated by sudden sensor stimulation caused by the environment." [] {source="NBO:GVG"} synonym: "environmental epilepsy" EXACT [] synonym: "reflex epilepsy" EXACT [] xref: MP:0009358 is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T11:07:41Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000676 name: tonic clonic seizure namespace: behavior_ontology def: "A type of generalized seizure characterised by a combination of tonic stiffening (extensions) followed by clonic flexion motions." [] {source="NBO:GVG"} comment: The seizures are divided into two phases, the tonic phase and the clonic phase, hence the name of the seizure, though a tonic clonic seizure will often be preceded by an aura. synonym: "gran mal seizure" EXACT [] synonym: "grand mal seizure" EXACT [] xref: HP:0002069 xref: MP:0003997 is_a: NBO:0000662 ! generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:03:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000677 name: tonic seizure namespace: behavior_ontology def: "A type of seizure characterised by muscle rigidity." [] {source="NBO:GVG"} xref: HP:0010818 xref: MP:0002826 is_a: NBO:0000662 ! generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:09:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000678 name: febrile seizure namespace: behavior_ontology def: "\"A type of seizure associated with a significant rise in body temperature.\" [wikpedia:http\\://en.wikipedia.org/wiki/Febrile_seizure]" [] synonym: "febrile convulsion" EXACT [] synonym: "fever fit" EXACT [] xref: HP:0002373 is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:13:26Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000679 name: simple febrile seizure namespace: behavior_ontology def: "\"A febrile seizure that lasts less than 15 minutes , does not recur in 24 hours, and involves the entire body.\" [wikipedia:http\\://en.wikipedia.org/wiki/Febrile_seizure]" [] is_a: NBO:0000678 ! febrile seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:16:07Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000680 name: complex febrile seizure namespace: behavior_ontology def: "\"A febrile seizure characterized by longer duration, recurrence, or focus on only part of the body.\" [wikipedia:http\\://en.wikipedia.org/wiki/Febrile_seizure]" [] is_a: NBO:0000678 ! febrile seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:19:54Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000681 name: benign rolandic epilepsy namespace: behavior_ontology def: "\"Benign rolandic epilepsy is characterized by either simple partial seizures involving the mouth and face or generalized tonic-clonic seizures.\" [wikipedia:http\\://en.wikipedia.org/wiki/Rolandic_epilepsy]" [] synonym: "benign (childhood) epilepsy with centrotemporal (EEG) spikes" EXACT [] is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:24:49Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000682 name: medial temporal lobe epilepsy namespace: behavior_ontology def: "\"A temporal lobe epilepsy arises in the hippocampus, parahippocampal gyrus and amygdala which are located in the inner aspect of the temporal lobe.\" [wikipedia:http\\://en.wikipedia.org/wiki/Temporal_lobe_epilepsy]" [] synonym: "MTLE" EXACT [] is_a: NBO:0000650 ! temporal lobe epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:30:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000683 name: lateral temporal lobe epilepsy namespace: behavior_ontology def: "\"A temporal lobe epilepsy arises in the neocortex on the outer surface of the temporal lobe of the brain.\" [wikipedia:http\\://en.wikipedia.org/wiki/Temporal_lobe_epilepsy]" [] synonym: "LTLE" EXACT [] is_a: NBO:0000650 ! temporal lobe epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:31:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000684 name: childhood absence epilepsy namespace: behavior_ontology synonym: "pyknolepsy" EXACT [] is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:32:59Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000685 name: continuous seizure namespace: behavior_ontology is_a: NBO:0000025 ! seizures property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:39:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000686 name: provoked seizure namespace: behavior_ontology def: "\"Paroxysmal events that mimic an epileptic seizure but do not involve abnormal, rhythmic discharges of cortical neurons.\" [wikipedia:http\\://en.wikipedia.org/wiki/Non-epileptic_seizure]" [] synonym: "non-epileptic seizure" EXACT [] is_a: NBO:0000012 ! seizures/epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:47:13Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000687 name: psychogenic non-epileptic seizure namespace: behavior_ontology def: "\"A type of seizure of psychological origin that superficially resembles an epileptic seizure, but without the characteristic electrical discharges associated with epilepsy.\" [wikipedia:http\\://en.wikipedia.org/wiki/Psychogenic_non-epileptic_seizures]" [] synonym: "non-epileptic attack disorder" EXACT [] synonym: "PNES" EXACT [] is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:50:08Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000688 name: myoclonic epilepsy namespace: behavior_ontology def: "A type of epilepsy that is characterised by myoclonic seizures." [] {source="NBO:GVG"} is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:53:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000689 name: progressive myoclonic epilepsy namespace: behavior_ontology def: "\"A myoclonic epilepsy characterised by a combination of myoclonic and tonic-clonic seizures.\" [wikipedia:http\\://en.wikipedia.org/wiki/Progressive_myoclonic_epilepsy]" [] is_a: NBO:0000688 ! myoclonic epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:55:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000690 name: status epilepticus namespace: behavior_ontology def: "\"Continuous unremitting seizure lasting longer than 30 minutes or recurrent seizures without regaining consciousness between seizures for greater than 30 minutes.\" [wikipedia:http\\://en.wikipedia.org/wiki/Status_epilepticus]" [] xref: HP:0002133 is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T05:59:47Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000691 name: non-convulsive status epilepticus namespace: behavior_ontology is_a: NBO:0000690 ! status epilepticus property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T06:42:06Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000692 name: generalised convulsive status epilepticus namespace: behavior_ontology is_a: NBO:0000690 ! status epilepticus property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T06:42:29Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000693 name: complex partial status epilepticus namespace: behavior_ontology def: "\"A convulsive status epilepticus characterized by seizures involving long-lasting stupor, staring and unresponsiveness.\" [wikipedia:http\\://en.wikipedia.org/wiki/Complex_partial_status_epilepticus]" [] is_a: NBO:0000691 ! non-convulsive status epilepticus property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T07:20:21Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000694 name: absence status epilepticus namespace: behavior_ontology is_a: NBO:0000691 ! non-convulsive status epilepticus property_value: http://purl.org/dc/elements/1.1/date "2011-05-27T07:21:27Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000695 name: subtle status epilepticus namespace: behavior_ontology def: "\"Subtle status epilepticus consists of electrical seizure activity in the brain that endures when the associated motor responses are fragmentary or even absent.\" [web:http\\://emedicine.medscape.com/article/1164462-overview]" [] is_a: NBO:0000690 ! status epilepticus property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T10:08:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000696 name: simple partial status epilepticus namespace: behavior_ontology def: "\"Simple partial SE consists of seizures that are localized to a discrete area of cerebral cortex and produce no alteration in consciousness.\" [web:http\\://emedicine.medscape.com/article/1164462-overview]" [] is_a: NBO:0000690 ! status epilepticus property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T10:10:13Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000697 name: frontal lobe epilepsy namespace: behavior_ontology def: "\"A type of epilepsy characterized by brief, recurring seizures that arise in the frontal lobes of the brain, often while the patient is sleeping.\" [wikipedia:http\\://en.wikipedia.org/wiki/Frontal_lobe_epilepsy]" [] is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T10:14:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000698 name: nocturnal epilepsy namespace: behavior_ontology def: "A type of epilepsy characterised by seizure, usually tonic clonic, that occur only during sleep." [] {source="NBO:GVG"} is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T10:17:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000699 name: photosensitive seizure namespace: behavior_ontology def: "\"A type of reflex seizure caused by visual stimuli that form patterns in time or space, such as flashing lights, bold, regular patterns, or regular moving patterns.\" [wikipedia:http\\://en.wikipedia.org/wiki/Photosensitive_epilepsy]" [] synonym: "photosensitive epilepsy" EXACT [] is_a: NBO:0000675 ! reflex seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T11:11:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000700 name: audiogenic seizure namespace: behavior_ontology alt_id: NBO:0000725 def: "A type of seizure induced by exposure to an auditory stimulus." [] {source="NBO:GVG"} synonym: "auditory stimulation induced seizure" EXACT [] xref: MP:0001496 is_a: NBO:0000675 ! reflex seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T11:12:23Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000701 name: typical absence seizure namespace: behavior_ontology def: "An absence seizure induced by hyperventilation." [] {source="NBO:GVG"} is_a: NBO:0000669 ! absence seizures property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T11:59:14Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000702 name: atypical absence seizure namespace: behavior_ontology def: "An absence seizure not induced by hyperventilation." [] {source="NBO:GVG"} xref: HP:0007270 is_a: NBO:0000669 ! absence seizures property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T11:59:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000703 name: secondary generalized seizure namespace: behavior_ontology def: "A generalized seizure that was initiated as a partial seizure." [] {source="NBO:GVG"} xref: HP:0002434 is_a: NBO:0000662 ! generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:08:24Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000704 name: rapid secondary generalization namespace: behavior_ontology def: "A generalized seizure that was initiated as a partial seizure but very rapidly spread to both hemispheres." [] {source="NBO:GVG"} is_a: NBO:0000703 ! secondary generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:11:05Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000705 name: automatism namespace: behavior_ontology def: "Purposeless repetitive motor activities that often occur during a seizure." [] {source="NBO:GVG"} comment: Automatisms may occur during complex partial or absence seizures. is_a: NBO:0000643 ! involuntary movement behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:14:35Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000706 name: oral automatism namespace: behavior_ontology def: "An automatism characterised by involuntary oral activity such as lip smacking and swallowing." [] {source="NBO:GVG"} is_a: NBO:0000705 ! automatism property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:15:48Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000707 name: gestural automatism namespace: behavior_ontology def: "An automatism characterised by involuntary movement of the limbs or body such as fumbling, picking and rubbing." [] {source="NBO:GVG"} is_a: NBO:0000705 ! automatism property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:17:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000708 name: complex motor automatism namespace: behavior_ontology def: "An automatism characterised by stereotyped series of motor actions usually involving the limbs bilaterally such as swimming \\nmovements, kicking movements and bicycling movements." [] {source="NBO:GVG"} is_a: NBO:0000705 ! automatism property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:20:03Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000709 name: drug induced seizure namespace: behavior_ontology def: "A type of seizure induced by the administration of a drug." [] {source="NBO:GVG"} is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:32:11Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000710 name: drug overdose induced seizure namespace: behavior_ontology def: "A type of seizure induced by accidental or intentional ingestion or application of a drug in quantities greater than recommended." [] {source="NBO:GVG"} is_a: NBO:0000709 ! drug induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:34:37Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000711 name: drug withdrawal induced seizure namespace: behavior_ontology def: "A type of seizure induced by termination of drug administration." [] {source="NBO:GVG"} is_a: NBO:0000709 ! drug induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:35:22Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000712 name: hypoglycemia induced seizure namespace: behavior_ontology def: "A type of seizure induced by lower than normal level of blood glucose levels." [] {source="GVG:NBO"} xref: HP:0002173 is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:35:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000713 name: cocaine overdose induced seizure namespace: behavior_ontology def: "A type of seizure induced by the administration of cocaine." [] {source="NBO:GVG"} is_a: NBO:0000710 ! drug overdose induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:36:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000714 name: isoniazide overdose induced seizure namespace: behavior_ontology def: "A type of seizure induced by the administration of isoniazide." [] {source="NBO:GVG"} is_a: NBO:0000710 ! drug overdose induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:36:46Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000715 name: amphetamine overdose induced seizure namespace: behavior_ontology def: "A type of seizure induced by the administration of amphetamine." [] {source="NBO:GVG"} is_a: NBO:0000710 ! drug overdose induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T12:37:01Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000716 name: antidepressant overdose induced seizure namespace: behavior_ontology def: "A type of seizure induced by the administration of antidepressant." [] {source="NBO:GVG"} is_a: NBO:0000710 ! drug overdose induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:14:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000717 name: theophylline overdose induced seizure namespace: behavior_ontology def: "A type of seizure induced by the administration of theophylline." [] {source="NBO:GVG"} is_a: NBO:0000710 ! drug overdose induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:15:33Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000718 name: penicillin overdose induced seizure namespace: behavior_ontology def: "A type of seizure induced by the administration of penicillin." [] {source="NBO:GVG"} is_a: NBO:0000710 ! drug overdose induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:16:56Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000719 name: alcohol withdrawal induced seizure namespace: behavior_ontology def: "A type of seizure induced by termination of alcohol administration." [] {source="NBO:GVG"} is_a: NBO:0000711 ! drug withdrawal induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:19:06Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000720 name: benzodiazepine withdrawal induced seizure namespace: behavior_ontology def: "A type of seizure induced by termination of benzodiazepine administration." [] {source="NBO:GVG"} is_a: NBO:0000711 ! drug withdrawal induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:22:57Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000721 name: barbiturates withdrawal induced seizure namespace: behavior_ontology def: "A type of seizure induced by termination of barbiturates administration." [] {source="NBO:GVG"} is_a: NBO:0000711 ! drug withdrawal induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:24:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000722 name: heroin withdrawal induced seizure namespace: behavior_ontology def: "A type of seizure induced by termination of heroin administration." [] {source="NBO:GVG"} is_a: NBO:0000711 ! drug withdrawal induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:26:05Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000723 name: hypomagnesemia induced seizure namespace: behavior_ontology def: "A type of seizure induced by lower than normal level of blood magnesium levels." [] {source="NBO:GVG"} is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:34:40Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000724 name: electrical stimulation induced seizure namespace: behavior_ontology def: "A type of seizure induced by exposure to an electrical stimulus." [] {source="NBO:GVG"} is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T01:42:36Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000726 name: trauma induced seizure namespace: behavior_ontology def: "A type of seizure induced by the administration of a brain trauma." [] {source="NBO:GVG"} is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T03:39:02Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000727 name: kindling induced seizure namespace: behavior_ontology def: "A type of seizure induced by kindling, a repeated administration of seizure invoking stimulus which eventually results changes in the brain." [] {source="NBO:GVG"} is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T03:46:52Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000728 name: electrical kindling induced seizure namespace: behavior_ontology def: "A type of seizure induced by kindling, a repeated administration of electrical stimulus which eventually results changes in the brain." [] {source="NBO:GVG"} is_a: NBO:0000727 ! kindling induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T03:50:30Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000729 name: chemical kindling induced seizure namespace: behavior_ontology def: "A type of seizure induced by kindling, a repeated administration of chemical stimulus which eventually results changes in the brain." [] {source="NBO:GVG"} is_a: NBO:0000727 ! kindling induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T03:51:25Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000730 name: auditory kindling induced seizure namespace: behavior_ontology def: "A type of seizure induced by kindling, a repeated administration of auditory stimulus which eventually results changes in the brain." [] {source="NBO:GVG"} is_a: NBO:0000727 ! kindling induced seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T03:52:15Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000731 name: hemiclonic seizure namespace: behavior_ontology def: "A simple partial seizure affecting the kinesthetic behavior of one side of the body." [] {source="NBO:GVG"} synonym: "unilateral clonic seizure" EXACT [] xref: HP:0006813 is_a: NBO:0000651 ! simple partial seizure with motor signs property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T05:51:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000732 name: left side clonic seizure namespace: behavior_ontology def: "A simple partial seizure affecting the kinesthetic behavior of left side of the body." [] {source="NBO:GVG"} is_a: NBO:0000731 ! hemiclonic seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T06:01:58Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000733 name: right side clonic seizure namespace: behavior_ontology def: "A simple partial seizure affecting the kinesthetic behavior of right side of the body." [] {source="NBO:GVG"} is_a: NBO:0000731 ! hemiclonic seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T06:03:17Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000734 name: infantile spasm namespace: behavior_ontology def: "A type of epileptic seizures occurring in infants and characterised by clusters of myoclonic spasms." [] {source="NBO:GVG"} synonym: "Generalized Flexion Epilepsy" EXACT [] synonym: "Infantile Epileptic Encephalopathy" EXACT [] synonym: "Infantile Myoclonic Encephalopathy" EXACT [] synonym: "jackknife convulsions" EXACT [] synonym: "Massive Myoclonia" EXACT [] synonym: "Salaam spasms" EXACT [] synonym: "West syndrome" EXACT [] xref: HP:0002391 xref: HP:0011097 is_a: NBO:0000588 ! spasm is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T06:47:31Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000735 name: hypocalcemia induced seizure namespace: behavior_ontology def: "A type of seizure induced by lower than normal level of blood calcium levels." [] {source="NBO:GVG"} xref: HP:0002199 is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T08:04:53Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000736 name: secondary generalized tonic clonic seizure namespace: behavior_ontology def: "A generalized tonic clonic seizure that was initiated as a partial seizure." [] {source="NBO:GVG"} xref: HP:0002602 is_a: NBO:0000703 ! secondary generalized seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T08:28:12Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000737 name: photostimulation induced seizure namespace: behavior_ontology def: "A type of seizure induced by exposure to a light stimulus." [] {source="NBO:GVG"} xref: HP:0001327 is_a: NBO:0000686 ! provoked seizure property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T08:34:10Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000738 name: gelastic epilepsy namespace: behavior_ontology def: "A type of epilepsy that is characterised a sudden burst of energy, usually in the form of laughing." [] {source="NBO:GVG"} synonym: "gelastic seizure" EXACT [] xref: HP:0010821 is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T11:12:42Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000739 name: dacrystic epilepsy namespace: behavior_ontology def: "\"A type of epilepsy that is characterised a sudden paroxysmal crying.\" [NBO:, NBO:GVG]" [] synonym: "dacrystic seizure" EXACT [] xref: HP:0010820 is_a: NBO:0000642 ! epilepsy property_value: http://purl.org/dc/elements/1.1/date "2011-05-28T11:18:45Z" xsd:string created_by: George Gkoutos [Term] id: NBO:0000740 name: aggressive behavior by intent namespace: behavior_ontology is_a: NBO:0000015 ! aggressive behavior property_value: http://purl.org/dc/elements/1.1/date "2012-02-16T01:16:13Z" xsd:string created_by: gkoutos [Term] id: NBO:0000741 name: aggressive behavior by means namespace: behavior_ontology is_a: NBO:0000015 ! aggressive behavior property_value: http://purl.org/dc/elements/1.1/date "2012-02-16T01:16:31Z" xsd:string created_by: gkoutos [Term] id: NBO:0000742 name: autoaggressive behavior namespace: behavior_ontology def: "Agressive behavior towards oneself." [] {source="NBO:GVG"} is_a: NBO:0000105 ! aggressive behavior towards animals property_value: http://purl.org/dc/elements/1.1/date "2012-02-16T01:16:55Z" xsd:string created_by: gkoutos [Term] id: NBO:0000743 name: social aggression behavior namespace: behavior_ontology def: "An aggressive behavior towards other members of the society." [] {source="NBO:RH"} is_a: NBO:0000105 ! aggressive behavior towards animals is_a: NBO:0000121 ! agonistic behavior property_value: http://purl.org/dc/elements/1.1/date "2012-02-16T02:27:08Z" xsd:string created_by: gkoutos [Term] id: NBO:0000744 name: perception behavior phenotype namespace: behavior_ontology is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-16T04:51:23Z" xsd:string created_by: gkoutos [Term] id: NBO:0000745 name: language communication behavior namespace: behavior_ontology def: "A social behavior related to the activity of conveying information by means of a system of arbitrary signals, such as voice sounds, gestures, or written symbols." [] {source="NBO:GVG"} is_a: NBO:0000612 ! communication behavior property_value: http://purl.org/dc/elements/1.1/date "2012-03-16T05:13:17Z" xsd:string created_by: gkoutos [Term] id: NBO:0000746 name: spatial perception namespace: behavior_ontology is_a: NBO:0000308 ! sensation behavior intersection_of: NBO:0000308 ! sensation behavior intersection_of: is_about PATO:0000117 ! size relationship: is_about PATO:0000117 ! size property_value: http://purl.org/dc/elements/1.1/date "2012-03-16T05:57:42Z" xsd:string created_by: gkoutos [Term] id: NBO:0000747 name: jaw movement namespace: behavior_ontology is_a: NBO:0000007 ! mouth movement property_value: http://purl.org/dc/elements/1.1/date "2012-03-17T09:51:17Z" xsd:string created_by: gkoutos [Term] id: NBO:0000748 name: tongue movement namespace: behavior_ontology def: "The act of displacing part or all of the tongue from its current position [NBO:SMAC]" [] is_a: NBO:0000007 ! mouth movement property_value: http://purl.org/dc/elements/1.1/date "2012-03-17T09:52:25Z" xsd:string created_by: gkoutos [Term] id: NBO:0000749 name: blinking namespace: behavior_ontology is_a: NBO:0000750 ! eyelid movement property_value: http://purl.org/dc/elements/1.1/date "2012-03-17T09:53:29Z" xsd:string created_by: gkoutos [Term] id: NBO:0000750 name: eyelid movement namespace: behavior_ontology is_a: NBO:0000001 ! body part movement property_value: http://purl.org/dc/elements/1.1/date "2012-03-17T09:54:30Z" xsd:string created_by: gkoutos [Term] id: NBO:0000751 name: perception behavior by means namespace: behavior_ontology is_a: NBO:0000308 ! sensation behavior property_value: http://purl.org/dc/elements/1.1/date "2012-03-16T05:23:06Z" xsd:string created_by: gkoutos [Term] id: NBO:0000752 name: electrical nociceptive behavior namespace: behavior_ontology is_a: NBO:0000331 ! nociceptive behavior intersection_of: NBO:0000331 ! nociceptive behavior intersection_of: in_response_to GO:0050967 ! detection of electrical stimulus involved in sensory perception of pain relationship: in_response_to GO:0050967 ! detection of electrical stimulus involved in sensory perception of pain property_value: http://purl.org/dc/elements/1.1/date "2012-03-17T03:59:12Z" xsd:string created_by: gkoutos [Term] id: NBO:0000753 name: non-rapid eye movement sleep behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to all sleep stages in the circadian sleep/wake cycle other than REM sleep." [] {source="NBO:GVG"} is_a: NBO:0000419 ! sleeping behavior phenotype is_a: NBO:0000474 ! circadian behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T10:59:20Z" xsd:string created_by: gkoutos [Term] id: NBO:0000754 name: rapid eye movement sleep phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the stage in the circadian sleep cycle during which dreams occur and the body undergoes marked changes including rapid eye movement, loss of reflexes, and increased pulse rate and brain activity." [] {source="NBO:GVG"} is_a: NBO:0000419 ! sleeping behavior phenotype is_a: NBO:0000474 ! circadian behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T11:08:01Z" xsd:string created_by: gkoutos [Term] id: NBO:0000755 name: reproductive behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the actions or interactions of an organism that are associated with reproduction." [] {source="NBO:GVG"} is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:08:56Z" xsd:string created_by: gkoutos [Term] id: NBO:0000756 name: mating behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the interactions between organisms for the purpose of mating." [] {source="NBO:GVG"} is_a: NBO:0000755 ! reproductive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:10:16Z" xsd:string created_by: gkoutos [Term] id: NBO:0000757 name: post-mating behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the specific actions or reactions of an organism following mating." [] {source="NBO:GVG"} is_a: NBO:0000755 ! reproductive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:10:27Z" xsd:string created_by: gkoutos [Term] id: NBO:0000758 name: sexual activity phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the activity which primary purpose is the sexual reproduction." [] {source="NBO:GVG"} is_a: NBO:0000755 ! reproductive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:10:54Z" xsd:string created_by: gkoutos [Term] id: NBO:0000759 name: courtship behavior phenotype namespace: behavior_ontology def: "Observable characteristic related to the behavioral interactions between organisms for the purpose of attracting sexual partners." [] {source="NBO:GVG"} is_a: NBO:0000756 ! mating behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:13:54Z" xsd:string created_by: gkoutos [Term] id: NBO:0000760 name: female courtship behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the actions or reactions of a female, for the purpose of attracting a sexual partner." [] {source="NBO:GVG"} is_a: NBO:0000759 ! courtship behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:16:31Z" xsd:string created_by: gkoutos [Term] id: NBO:0000761 name: male courtship behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the actions or reactions of a male, for the purpose of attracting a sexual partner." [] {source="NBO:GVG"} is_a: NBO:0000759 ! courtship behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:16:49Z" xsd:string created_by: gkoutos [Term] id: NBO:0000762 name: copulation phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the act of sexual union between male and female, involving the transfer of sperm." [] {source="NBO:GVG"} is_a: NBO:0000756 ! mating behavior phenotype is_a: NBO:0000758 ! sexual activity phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:22:41Z" xsd:string created_by: gkoutos [Term] id: NBO:0000763 name: female sexual activity phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the female activity which primary purpose is the sexual reproduction." [] {source="NBO:GVG"} is_a: NBO:0000758 ! sexual activity phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:22:53Z" xsd:string created_by: gkoutos [Term] id: NBO:0000764 name: male sexual activity phenotype namespace: behavior_ontology def: "Observable characteristic of behavior related to the male activity which primary purpose is the sexual reproduction." [] {source="NBO:GVG"} is_a: NBO:0000758 ! sexual activity phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:23:03Z" xsd:string created_by: gkoutos [Term] id: NBO:0000765 name: learning and/or memory behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour related to the acquisition and processing of information and/or the storage and retrieval of this information over time." [] {source="NBO:GVG"} is_a: NBO:0000266 ! cognitive behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:33:56Z" xsd:string created_by: gkoutos [Term] id: NBO:0000766 name: learning behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour associated with any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience." [] {source="NBO:GVG"} is_a: NBO:0000765 ! learning and/or memory behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:34:12Z" xsd:string created_by: gkoutos [Term] id: NBO:0000767 name: memory behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour related to the ability of an organism's ability to store, retain, and recall information and experiences." [] {source="NBO:GVG"} is_a: NBO:0000765 ! learning and/or memory behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T02:34:26Z" xsd:string created_by: gkoutos [Term] id: NBO:0000768 name: emission behavior phenotype namespace: behavior_ontology is_a: NBO:0000243 ! behavioral phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T03:46:31Z" xsd:string created_by: gkoutos [Term] id: NBO:0000769 name: behavioral control of excretion phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour related to the elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds." [] {source="NBO:GVG"} is_a: NBO:0000768 ! emission behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T03:46:55Z" xsd:string created_by: gkoutos [Term] id: NBO:0000770 name: behavioral control of defecation phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour related to the expulsion of feces from the rectum." [] {source="NBO:GVG"} is_a: NBO:0000769 ! behavioral control of excretion phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T03:47:09Z" xsd:string created_by: gkoutos [Term] id: NBO:0000771 name: behavioral control of urination phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour related to the regulation of body fluids process by which parasympathetic nerves stimulate the bladder wall muscle to contract and expel urine from the body." [] {source="NBO:GVG"} is_a: NBO:0000769 ! behavioral control of excretion phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-19T03:48:16Z" xsd:string created_by: gkoutos [Term] id: NBO:0000772 name: behavioral control of production of sound phenotype namespace: behavior_ontology is_a: NBO:0000768 ! emission behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-20T05:24:59Z" xsd:string created_by: gkoutos [Term] id: NBO:0000773 name: behavioral control of external secretion phenotype namespace: behavior_ontology is_a: NBO:0000768 ! emission behavior phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-20T05:25:03Z" xsd:string created_by: gkoutos [Term] id: NBO:0000774 name: behavioral control of lacrimation phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour related to the regulated release of the aqueous layer of the tear film from the lacrimal glands." [] {source="NBO:GVG"} is_a: NBO:0000773 ! behavioral control of external secretion phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-20T05:28:58Z" xsd:string created_by: gkoutos [Term] id: NBO:0000775 name: crying behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour in which an organism sheds tears, often accompanied by non-verbal vocalizations and in response to external or internal stimuli." [] {source="NBO:GVG"} is_a: NBO:0000601 ! emotional behavior phenotype is_a: NBO:0000772 ! behavioral control of production of sound phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-20T05:30:38Z" xsd:string created_by: gkoutos [Term] id: NBO:0000776 name: mobbing calling phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour associated with signals made by the mobbing species while harassing a predator." [] {source="NBO:GVG"} is_a: NBO:0000601 ! emotional behavior phenotype is_a: NBO:0000772 ! behavioral control of production of sound phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-20T05:32:31Z" xsd:string created_by: gkoutos [Term] id: NBO:0000777 name: vocalization behavior phenotype namespace: behavior_ontology def: "Observable characteristic of behaviour in which an organism produces sounds by a mechanism involving its respiratory system." [] {source="NBO:GVG"} is_a: NBO:0000772 ! behavioral control of production of sound phenotype property_value: http://purl.org/dc/elements/1.1/date "2012-03-20T05:34:04Z" xsd:string created_by: gkoutos [Term] id: NBO:0000778 name: emotional conditioning namespace: behavior_ontology is_a: NBO:0000208 ! classical conditioning intersection_of: NBO:0000208 ! classical conditioning intersection_of: is_about NBO:0000003 ! emotional behavior relationship: is_about NBO:0000003 ! emotional behavior property_value: http://purl.org/dc/elements/1.1/date "2012-03-23T10:05:56Z" xsd:string created_by: gkoutos [Term] id: NBO:0000851 name: increased amount of liquid in a single drinking act is_a: NBO:0000540 ! drinking behavior phenotype [Term] id: NBO:0000886 name: increased amount of liquid in drinking regulation is_a: NBO:0000540 ! drinking behavior phenotype [Term] id: NBO:0000929 name: frequency of drinking is_a: NBO:0000133 ! liquid preference/aversion property_value: note "'participates in' some \n('regulation of drinking behavior' and (has_quality some \n(frequency and (towards some 'liquid consumption'))))" xsd:string [Term] id: NBO:0000961 name: increased frequency of drinking is_a: NBO:0000929 ! frequency of drinking [Term] id: NBO:0000993 name: decreased frequency of drinking is_a: NBO:0000929 ! frequency of drinking [Term] id: NBO:0001536 name: behavioral response to radiation def: "Behavior as a result of an electromagnetic radiation stimulus." [] {source="NBO:GVG"} is_a: GO:0009314 ! response to radiation is_a: NBO:0000308 ! sensation behavior created_by: George Gkoutos [Term] id: NBO:0001571 name: behavioral response to light def: "Behavior as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light." [] {source="NBO:GVG"} is_a: GO:0009416 ! response to light stimulus is_a: NBO:0001536 ! behavioral response to radiation created_by: George Gkoutos [Term] id: NBO:0001632 name: behavioral response to chemical stimulus def: "Behavior as a result of a chemical stimulus." [] {source="NBO:GVG"} is_a: NBO:0000308 ! sensation behavior created_by: George Gkoutos [Term] id: NBO:0001679 name: behavioral response to xenobiotics def: "Behavior as a result of a xenobiotic compound (compound foreign to living organisms) stimulus." [] {source="NBOC:GVG"} is_a: NBO:0001632 ! behavioral response to chemical stimulus created_by: George Gkoutos [Term] id: NBO:0001728 name: behavioral response to addictive substance def: "Behavior as a result of sensitivity to an addictive substance intake." [] {source="NBOC:GVG"} is_a: NBO:0001679 ! behavioral response to xenobiotics created_by: George Gkoutos [Term] id: NBO:0001763 name: behavioral response to alcohol def: "Behavior as a result of sensitivity to cocaine alcohol." [] {source="NBOC:GVG"} is_a: NBO:0001728 ! behavioral response to addictive substance intersection_of: NBO:0001728 ! behavioral response to addictive substance intersection_of: in_response_to NBO:0000131 ! alcohol consumption relationship: in_response_to NBO:0000131 ! alcohol consumption [Term] id: NBO:0001786 name: regulation of behavior def: "\"Any process that modulates the frequency, rate or extent of behavior, the specific actions or reactions of an organism in response to external or internal stimuli.\" [GO:0050795]" [] xref: GO:0050795 is_a: NBO:0000313 ! behavior process relationship: RO:0002211 NBO:0000313 ! regulates behavior process created_by: George Gkoutos [Term] id: NBO:0001824 name: regulation of alcohol consumption def: "Any process that modulates the frequency, rate or extent of alcohol consumption, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0000064 ! regulation of drinking behavior relationship: RO:0002211 NBO:0000131 ! regulates alcohol consumption created_by: George Gkoutos [Term] id: NBO:0001845 name: consumption behavior def: "Behavior related to the intake of substances." [] {source="NBOC:GVG"} synonym: "ingest" BROAD [] is_a: NBO:0000313 ! behavior process created_by: George Gkoutos [Term] id: NBO:0001884 name: consumption of an addictive substance def: "Behavior related to the intake of addictive substances." [] {source="NBOC:GVG"} is_a: NBO:0001845 ! consumption behavior created_by: George Gkoutos [Term] id: NBO:0001915 name: cocaine consumption def: "Behavior related to the intake of cocaine." [] {source="NBOC:GVG"} is_a: NBO:0001884 ! consumption of an addictive substance intersection_of: NBO:0001884 ! consumption of an addictive substance intersection_of: has_participant CHEBI:27958 ! cocaine relationship: has_participant CHEBI:27958 ! cocaine created_by: George Gkoutos [Term] id: NBO:0001952 name: morphine consumption def: "Behavior related to the intake of morphine." [] {source="NBOC:GVG"} is_a: NBO:0001884 ! consumption of an addictive substance intersection_of: NBO:0001884 ! consumption of an addictive substance intersection_of: has_participant CHEBI:17303 ! morphine relationship: has_participant CHEBI:17303 ! morphine created_by: George Gkoutos [Term] id: NBO:0001987 name: behavioral response to cocaine def: "Behavior as a result of sensitivity to cocaine intake." [] {source="NBOC:GVG"} xref: GO:0048148 is_a: NBO:0001728 ! behavioral response to addictive substance intersection_of: NBO:0001728 ! behavioral response to addictive substance intersection_of: in_response_to NBO:0001915 ! cocaine consumption relationship: in_response_to NBO:0001915 ! cocaine consumption [Term] id: NBO:0002021 name: behavioral response to morphine def: "Behavior as a result of sensitivity to morphine" [] {source="NBOC:GVG"} is_a: NBO:0001728 ! behavioral response to addictive substance intersection_of: NBO:0001728 ! behavioral response to addictive substance intersection_of: in_response_to NBO:0001952 ! morphine consumption relationship: in_response_to NBO:0001952 ! morphine consumption created_by: George Gkoutos [Term] id: NBO:0002065 name: behavioral response to nicotine def: "Behavior as a result of sensitivity to nicotine intake." [] {source="NBOC:GVG"} xref: GO:0035095 is_a: NBO:0001728 ! behavioral response to addictive substance intersection_of: NBO:0001728 ! behavioral response to addictive substance intersection_of: in_response_to NBO:0002086 ! nicotine consumption relationship: in_response_to NBO:0002086 ! nicotine consumption created_by: George Gkoutos [Term] id: NBO:0002086 name: nicotine consumption def: "Behavior related to the intake of nicotine." [] {source="NBOC:GVG"} is_a: NBO:0001884 ! consumption of an addictive substance intersection_of: NBO:0001884 ! consumption of an addictive substance intersection_of: has_participant CHEBI:18723 ! nicotine relationship: has_participant CHEBI:18723 ! nicotine created_by: George Gkoutos [Term] id: NBO:0002132 name: regulation of cocaine consumption def: "Any process that modulates the frequency, rate or extent of cocaine consumption, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0002234 ! regulation of consumption of an addictive substance relationship: RO:0002211 NBO:0001915 ! regulates cocaine consumption created_by: George Gkoutos [Term] id: NBO:0002169 name: regulation of consumption behavior def: "Any process that modulates the frequency, rate or extent of consumption behavior, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0001786 ! regulation of behavior relationship: RO:0002211 NBO:0001845 ! regulates consumption behavior created_by: George Gkoutos [Term] id: NBO:0002234 name: regulation of consumption of an addictive substance def: "Any process that modulates the frequency, rate or extent of consumption of an addictive substance, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0002169 ! regulation of consumption behavior relationship: RO:0002211 NBO:0001884 ! regulates consumption of an addictive substance created_by: George Gkoutos [Term] id: NBO:0002273 name: regulation of nicotine consumption def: "Any process that modulates the frequency, rate or extent of nicotine consumption, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0002234 ! regulation of consumption of an addictive substance relationship: RO:0002211 NBO:0002086 ! regulates nicotine consumption created_by: George Gkoutos [Term] id: NBO:0002308 name: regulation of morphine consumption def: "Any process that modulates the frequency, rate or extent of morphine consumption, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0002234 ! regulation of consumption of an addictive substance relationship: RO:0002211 NBO:0001952 ! regulates morphine consumption created_by: George Gkoutos [Term] id: NBO:0002362 name: behavioral response to anesthetic def: "Behavior as a result of sensitivity to an anasthetic intake." [] {source="NBOC:GVG"} is_a: NBO:0001679 ! behavioral response to xenobiotics created_by: George Gkoutos [Term] id: NBO:0002379 name: nursing behavior def: "Maternal behavior related to the nursing offspring." [] {source="NBOC:GVG"} is_a: NBO:0000152 ! maternal nurturing behavior [Term] id: NBO:0002436 name: regulation of feeding behavior def: "Any process that modulates the frequency, rate or extent of consumption of food or liquid" [] {source="NBOC:GVG"} is_a: NBO:0002169 ! regulation of consumption behavior created_by: George Gkoutos [Term] id: NBO:0002468 name: regulation of water consumption def: "Any process that modulates the frequency, rate or extent of water consumption, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0000064 ! regulation of drinking behavior relationship: RO:0002211 NBO:0000132 ! regulates water consumption created_by: George Gkoutos [Term] id: NBO:0002511 name: regulation of saccharin consumption def: "Any process that modulates the frequency, rate or extent of saccharin consumption, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0000063 ! regulation of eating behavior relationship: RO:0002211 NBO:0000136 ! regulates saccharin consumption created_by: George Gkoutos [Term] id: NBO:0002519 name: adipsia def: "A pathological drinking behavior characterised by a lack of desire to drink." [] {source="NBO:GVG"} xref: MP:0001428 is_a: NBO:0000993 ! decreased frequency of drinking created_by: George Gkoutos [Term] id: NBO:0002569 name: stress-induced hypothermia def: "Increase in core body termperature in response to stress or anticipatory anxiety." [] {source="NBOC:GVG"} is_a: NBO:0000469 ! stress related behavior relationship: in_response_to PATO:0001305 ! increased temperature created_by: George Gkoutos [Term] id: NBO:0002603 name: regulation of sexual activity def: "Any process that modulates the frequency, rate or extent of sexual activity, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0001786 ! regulation of behavior relationship: RO:0002211 NBO:0000034 ! regulates sexual activity created_by: George Gkoutos [Term] id: NBO:0002660 name: regulation of drinking preference behavior def: "A regulation of drinking behavior process associated with the preference over the type of liquids that are consumed. " [] {source="NBO:GVG"} is_a: NBO:0000064 ! regulation of drinking behavior created_by: George Gkoutos [Term] id: NBO:0002702 name: regulation of alcohol preference behavior def: "A regulation of drinking behavior process associated with the preference over alchohol consumption. " [] {source="NBO:GVG"} is_a: NBO:0002660 ! regulation of drinking preference behavior intersection_of: NBO:0002660 ! regulation of drinking preference behavior intersection_of: has_participant CHEBI:16236 ! ethanol relationship: has_participant CHEBI:16236 ! ethanol created_by: George Gkoutos [Term] id: NBO:0002743 name: regulation of eating preference behavior def: "A regulation of drinking behavior process associated with the preference over the type of food that is consumed. " [] {source="NBO:GVG"} is_a: NBO:0000063 ! regulation of eating behavior created_by: George Gkoutos [Term] id: NBO:0002794 name: regulation of saccharin preference behavior def: "A regulation of drinking behavior process associated with the preference over saccharing consumption. " [] {source="NBO:GVG"} is_a: NBO:0002743 ! regulation of eating preference behavior intersection_of: NBO:0002743 ! regulation of eating preference behavior intersection_of: has_participant CHEBI:32111 ! saccharin relationship: has_participant CHEBI:32111 ! saccharin created_by: George Gkoutos [Term] id: NBO:0002869 name: regulation of addictive substance consumption preference def: "A regulation of consumption of an addictive sustance behavior process associated with the preference over the type of addictive sustance that is consumed. " [] {source="NBO:GVG"} is_a: NBO:0002234 ! regulation of consumption of an addictive substance created_by: George Gkoutos [Term] id: NBO:0002916 name: regulation of cocaine consumption preference def: "A regulation of consumption of an addictive sustance behavior process associated with the preference over cocaine consumption. " [] {source="NBO:GVG"} is_a: NBO:0002132 ! regulation of cocaine consumption is_a: NBO:0002869 ! regulation of addictive substance consumption preference relationship: has_participant CHEBI:27958 ! cocaine created_by: George Gkoutos [Term] id: NBO:0002948 name: regulation of mating preference def: "A regulation of sexual activity process associated with the preference over a males or females." [] {source="NBO:GVG"} is_a: NBO:0002603 ! regulation of sexual activity [Term] id: NBO:0002950 name: angular vestibuloocular reflex def: "A vestibular reflex by which a response to an angular acceleration stimulus begins with an afferent nerve impulse from a receptor in the semi-circular canal and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness. [GOC:dph]" [] xref: GO:0060006 is_a: NBO:0000416 ! vestibulo-ocular reflex [Term] id: NBO:0002952 name: linear vestibuloocular reflex def: "A vestibular reflex by which a response to a linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the otolith and ends with the compensatory action of eye muscles. [GOC:dph]" [] xref: GO:0060007 is_a: NBO:0000416 ! vestibulo-ocular reflex [Term] id: NBO:0002986 name: withdrawal response def: "Behavior response to addictive substance resulting from the discontinuation of an addictive substance. [NBOC:GVG]" [] is_a: NBO:0001728 ! behavioral response to addictive substance [Term] id: NBO:0003047 name: regulation of behavioral response to chemical stimulus def: "Any process that modulates the frequency, rate or extent of behavioral response to chemical stimulus." [] {source="NBOC:GVG"} is_a: NBO:0001786 ! regulation of behavior relationship: RO:0002211 NBO:0001632 ! regulates behavioral response to chemical stimulus created_by: George Gkoutos [Term] id: NBO:0003104 name: regulation of behavioral response to addictive substance def: "Any process that modulates the frequency, rate or extent of behavioral response to addictive substance." [] {source="NBOC:GVG", http://purl.org/dc/elements/1.1/contributor="https://orcid.org/0000-0002-4277-2151"} is_a: NBO:0003047 ! regulation of behavioral response to chemical stimulus relationship: RO:0002211 NBO:0001728 ! regulates behavioral response to addictive substance created_by: George Gkoutos [Term] id: NBO:0003142 name: regulation of withdrawal response def: "Any process that modulates the frequency, rate or extent of withdrawal response." [] {source="NBOC:GVG"} is_a: NBO:0003104 ! regulation of behavioral response to addictive substance relationship: RO:0002211 NBO:0002986 ! regulates withdrawal response created_by: George Gkoutos [Term] id: NBO:0003161 name: addiction response def: "Behavior response to an addictive substance resulting from dependence of that addictive substance as well as unctronllable cravings of that substance. [NBOC:GVG]" [] is_a: NBO:0001728 ! behavioral response to addictive substance is_a: NBO:0002234 ! regulation of consumption of an addictive substance [Term] id: NBO:0003194 name: regulation of addiction response def: "Any process that modulates the frequency, rate or extent of addiction response." [] {source="NBOC:GVG", http://purl.org/dc/elements/1.1/contributor="https://orcid.org/0000-0002-4277-2151"} is_a: NBO:0002234 ! regulation of consumption of an addictive substance is_a: NBO:0003104 ! regulation of behavioral response to addictive substance relationship: RO:0002211 NBO:0003161 ! regulates addiction response created_by: George Gkoutos [Term] id: NBO:0009001 name: rotation behavior is_a: NBO:0000002 ! whole body movement [Term] id: NBO:0009002 name: locomotor inactivation behavior def: "Deactiviation of locomotory behavior." [] is_a: NBO:0000338 ! kinesthetic behavior [Term] id: NBO:0009003 name: hunting behavior def: "A predator behavior involving actively stalking prey over a distance." [] is_a: NBO:0000089 ! predator behavior is_a: NBO:0015003 ! active foraging behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-03-11T13:51:02Z" xsd:string created_by: Nicolas Matentzoglu [Term] id: NBO:0015000 name: ambush behavior def: "A predator behavior involving a surprise attack on unsuspecting prey. The predator remains in one place and waits for prey to come near. The predator conceals itself and then subdues its prey with its own body or body parts." [] is_a: NBO:0000089 ! predator behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-03-11T13:51:02Z" xsd:string created_by: Nicolas Matentzoglu [Term] id: NBO:0015001 name: predator avoidance behavior def: "An avoidance behavior engaged in by prey that reduces the success of a predator without the prey actually attacking the predator." [] is_a: NBO:0000635 ! avoidance behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-03-11T13:51:02Z" xsd:string created_by: Nicolas Matentzoglu [Term] id: NBO:0015002 name: trapping behavior def: "A predator behavior involving subduing prey using a structure or modification of the environment created by the predator for that purpose." [] is_a: NBO:0000089 ! predator behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-03-11T13:51:02Z" xsd:string created_by: Nicolas Matentzoglu [Term] id: NBO:0015003 name: active foraging behavior def: "Feeding behavior during which a living entity acquires food and energy by actively searching for food resources." [] is_a: NBO:0000079 ! feeding behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-08-04T13:51:02Z" xsd:string created_by: https://orcid.org/0000-0002-7356-1779 [Term] id: NBO:0015004 name: obsolete active foraging behavior def: "OBSOLETE. Feeding behavior during which a living entity acquires food and energy by actively searching for food resources." [] comment: A duplicate of NBO:0015003 {http://purl.org/dc/elements/1.1/contributor="0000-0002-4277-2151"} property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-08-04T13:51:02Z" xsd:string is_obsolete: true replaced_by: NBO:0015003 created_by: https://orcid.org/0000-0002-7356-1779 [Term] id: NBO:0015005 name: smoking behavior def: "Consumption behavior that involves burning a substance and inhaling the particulate and gas suspension emitted." [] {http://purl.org/spar/cito/citesAsAuthority="https://en.wikipedia.org/wiki/Smoking", http://purl.org/dc/elements/1.1/contributor="0000-0002-4277-2151"} is_a: NBO:0001845 ! consumption behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-09-06T10:51:02Z" xsd:string created_by: https://orcid.org/0000-0002-7356-1779 [Term] id: NBO:0015006 name: pipe smoking behavior def: "Smoking behavior that involves burning a substance such as tobacco and tasting or inhaling the smoke through a pipe." [] is_a: NBO:0015005 ! smoking behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-09-06T10:51:02Z" xsd:string created_by: https://orcid.org/0000-0002-7356-1779 [Term] id: NBO:0015007 name: cigarette smoking behavior def: "Smoking behavior that involves burning a substance such as tobacco wrapped in paper and inhaling the smoke." [] is_a: NBO:0015005 ! smoking behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-09-06T10:51:02Z" xsd:string created_by: https://orcid.org/0000-0002-7356-1779 [Term] id: NBO:0015008 name: cigar smoking behavior def: "Smoking behavior that involves burning a substance such as tobacco wrapped in tobacco leaf and inhaling the smoke." [] is_a: NBO:0015005 ! smoking behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-09-06T10:51:02Z" xsd:string created_by: https://orcid.org/0000-0002-7356-1779 [Term] id: NBO:0015009 name: snuffing behavior def: "Consumption behavior that involves inhaling a material (such as finely ground tobacco leaves) through the nose." [] is_a: NBO:0001845 ! consumption behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-2908-3327" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2019-09-06T10:51:02Z" xsd:string created_by: https://orcid.org/0000-0002-7356-1779 [Term] id: NBO:0020007 name: aiding digestion def: "Consumption of specific compounds that facilitate processing of food items." [] is_a: NBO:0020282 ! nutrient acquisition disjoint_from: NBO:0020068 ! food storage created_by: Luke Slater [Term] id: NBO:0020010 name: reproductive status assessment def: "Assessment of cues and signals from encountered individual to determine reproductive condition." [] is_a: NBO:0020084 ! mate finding behavior disjoint_from: NBO:0020272 ! hunt for mate created_by: Luke Slater [Term] id: NBO:0020015 name: warn other prey def: "Postures or signals that alert other animals to presence or approach of a predator." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020018 name: kill def: "Behavior in which one animal causes the death of another." [] synonym: "killing" EXACT [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020023 name: broadcast advertisement def: "Signal or behavior that reveals presence of the signaller directed to multiple receivers and not limited to particular receivers." [] is_a: NBO:0000147 ! sexual display behavior disjoint_from: NBO:0020242 ! build display structure created_by: Luke Slater [Term] id: NBO:0020031 name: bluff def: "Threat that will not be acted upon." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020033 name: contact aggression def: "Agonistic behavior involving direct physical contact including (but not limited to) biting, kicking, grabbing." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020034 name: beg food def: "Perform behaviors that may induce one or more other animals to share food with the performer." [] is_a: NBO:0020177 ! social acquisition of food disjoint_from: NBO:0020173 ! share food created_by: Luke Slater [Term] id: NBO:0020037 name: vigilance def: "Surveillance for presence or approach of predators." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020040 name: chase prey def: "Active pursuit of fleeing prey." [] is_a: NBO:0020292 ! capturing behaviour disjoint_from: NBO:0020045 ! flush prey created_by: Luke Slater [Term] id: NBO:0020045 name: flush prey def: "Behaviors in which predator forces potential prey to emerge from cover." [] is_a: NBO:0020292 ! capturing behaviour created_by: Luke Slater [Term] id: NBO:0020047 name: insert genital plug def: "Behavior associated with deposition of material by male following ejaculation to block access to female's reproductive tract during her future matings." [] is_a: NBO:0020298 ! sexual interference disjoint_from: NBO:0020109 ! sperm scraping created_by: Luke Slater [Term] id: NBO:0020048 name: facilitating oviposition def: "Deposition of eggs either into the medium, or onto a substrate." [] is_a: NBO:0000034 ! sexual activity created_by: Luke Slater [Term] id: NBO:0020054 name: mate guarding def: "One member of a recently mating pair prevents the other from subsequent matings with other individuals." [] is_a: NBO:0000078 ! post-mating behavior disjoint_from: NBO:0020071 ! pair affirmation created_by: Luke Slater [Term] id: NBO:0020059 name: occupy refuge def: "Currently reside in constructed or existing structure that provides reduced predator and/or environmental risk." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020063 name: coercion def: "Forcible alteration of behavior of one animal by another." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020066 name: gamete release function def: "Facilitating release or transfer of gametes." [] is_a: NBO:0000034 ! sexual activity created_by: Luke Slater [Term] id: NBO:0020068 name: food storage def: "Caching or hoarding of food for later use and for protection from competitors, or use of specific substrates for cultivation." [] is_a: NBO:0020282 ! nutrient acquisition created_by: Luke Slater [Term] id: NBO:0020071 name: pair affirmation def: "Displays or other behaviors performed by pairs in longer term pair bonds to advertise relationship to each other and to other animals nearby." [] is_a: NBO:0000078 ! post-mating behavior created_by: Luke Slater [Term] id: NBO:0020077 name: display condition (to predator) def: "Performance of behaviors that demonstrate physical condition of performer to a detected predator." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020079 name: jamming def: "Emission of signals in such a way as to prevent effective use of signals emitted by other parties." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020084 name: mate finding behavior def: "Active search for possible mates." [] is_a: NBO:0000010 ! reproductive behavior created_by: Luke Slater [Term] id: NBO:0020088 name: resource advertisement def: "Postures or signals performed to other animals to indicate the presence, and in some cases, the location, quantity, and quality, of a resource." [] is_a: NBO:0000235 ! hunger motivation behavior created_by: Luke Slater [Term] id: NBO:0020091 name: suitability assessment def: "Sensory assessment of a resource (usually using olfaction or taste), for suitability of subsequent usage." [] is_a: NBO:0020291 ! nutrient preparation disjoint_from: NBO:0020286 ! food extraction created_by: Luke Slater [Term] id: NBO:0020093 name: assessment behavior def: "A behavior on the part of one individual associated with evaluating the fighting ability or correlates of fighting ability of a potential opponent." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020096 name: trail following to resource def: "Locomotion to a resource guided by visual or olfactory cues created by a prior finder and/or user of that resource." [] is_a: NBO:0020188 ! nutrient locating disjoint_from: NBO:0020144 ! recovery from cache created_by: Luke Slater [Term] id: NBO:0020098 name: courtship begging def: "Behavior by one animals soliciting food provision by a potential mate." [] is_a: NBO:0000077 ! courtship behavior created_by: Luke Slater [Term] id: NBO:0020101 name: sexual cannibalism def: "Consumption of one member of a mating pair, usually the male, usually after the mating." [] is_a: NBO:0000077 ! courtship behavior created_by: Luke Slater [Term] id: NBO:0020102 name: mouth brooding def: "Process of retaining developing eggs in the mouth cavity." [] is_a: NBO:0000078 ! post-mating behavior created_by: Luke Slater [Term] id: NBO:0020105 name: create refuge def: "Construction of a structure in which builder can benefit from reduced predation risk and/or environmental stress." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020108 name: threat def: "Behavior that signifies hostility and predicts an increased probability of attack." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020109 name: sperm scraping def: "Use of specialized male organs to remove sperm already deposited in female's reproductive tract." [] is_a: NBO:0020298 ! sexual interference created_by: Luke Slater [Term] id: NBO:0020111 name: injure def: "Behavior in which one animal causes bodily damage to another." [] synonym: "injuring" EXACT [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020112 name: agonistic buffering def: "Carrying or manipulation of infants or equivalent items to reduce chances of aggression on carrier by other animals." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020117 name: deploy defense def: "Use of behavioral tactics or chemical weapons to deter predation. Example: flashing eye spots (behavioral tactic) or expulsion of noxious liquid (chemical)." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020121 name: insemination def: "Insertion of sperm not in a spermatophore into female body." [] is_a: NBO:0000060 ! copulation created_by: Luke Slater [Term] id: NBO:0020137 name: construct capturing device def: "Building of a trap, web, net, or other structure to help ensnare potential food items." [] is_a: NBO:0020292 ! capturing behaviour created_by: Luke Slater [Term] id: NBO:0020139 name: enhance crypsis def: "Behaviors that reduce detectability of performer against background." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020141 name: agonistic chase def: "Chasing of one animal by another during an agonistic conflict." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020142 name: dealing with toxins def: "The identification, avoidance, or neutralization of toxic substances in food." [] is_a: NBO:0020282 ! nutrient acquisition created_by: Luke Slater [Term] id: NBO:0020144 name: recovery from cache def: "Removal of food resource from previously-stored supply of food." [] is_a: NBO:0020188 ! nutrient locating created_by: Luke Slater [Term] id: NBO:0020145 name: agonistic alarm def: "Alarm behavior triggered by agonistic actions or postures." [] is_a: NBO:0000121 ! agonistic behavior is_a: NBO:0000470 ! behavioral alarm property_value: http://purl.org/dc/elements/1.1/contributor "0000-0002-4277-2151" xsd:string created_by: Luke Slater [Term] id: NBO:0020149 name: distress signaling def: "Signals emitted by an animal trapped or captured by a presumed predator." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020159 name: cooling behaviour def: "Behaviors that serve to reduce body temperature as by moving to shade or panting." [] is_a: NBO:0000051 ! thermoregulation behavior created_by: Luke Slater [Term] id: NBO:0020160 name: stalk prey def: "Approach to prey in manner designed to avoid early detection by prey." [] is_a: NBO:0020292 ! capturing behaviour created_by: Luke Slater [Term] id: NBO:0020170 name: food exposure def: "Behaviors that reveal a hidden food resource, such as digging, cracking, or breaking." [] is_a: NBO:0020188 ! nutrient locating created_by: Luke Slater [Term] id: NBO:0020173 name: share food def: "Behaviors in which animals solicit or allow other animals to utilize a resource they currently control." [] is_a: NBO:0020177 ! social acquisition of food created_by: Luke Slater [Term] id: NBO:0020174 name: spawning def: "Release of gametes one or both sexes into the ambient medium." [] is_a: NBO:0020066 ! gamete release function disjoint_from: NBO:0020204 ! mating amplexus created_by: Luke Slater [Term] id: NBO:0020175 name: reduce activity def: "Halting or diminution of activity to minimize detection by predator." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020177 name: social acquisition of food def: "Obtaining food that has been procured by other conspecifics or heterospecifics." [] is_a: NBO:0000235 ! hunger motivation behavior created_by: Luke Slater [Term] id: NBO:0020182 name: escalation def: "Increasing intensity of directed agonistic behavior." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020188 name: nutrient locating def: "Movement directed to the detection of new resources." [] is_a: NBO:0000235 ! hunger motivation behavior created_by: Luke Slater [Term] id: NBO:0020199 name: feign death def: "Become immobile and reduce other evidence of living state." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020204 name: mating amplexus def: "Spawning in which male and female are clasped or attached to ensure close proximity of released gametes" [] is_a: NBO:0020066 ! gamete release function created_by: Luke Slater [Term] id: NBO:0020219 name: misdirect predator def: "Behaviors directed towards presumed predators to redirect their attention away from a location of importance to the performer." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020220 name: exclusion def: "Behavior that serves to exlude an animal from a group." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020223 name: inspect predator def: "Conspicuous orientation towards and/or approach to detected predator." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020230 name: attack predator def: "Perform physically violent acts on a presumed predator." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020239 name: triumph def: "Display behavior by the winner of a prior agonistic contest." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020241 name: mating solicitation def: "Performance of a behavior that indicates the performer's willingness to mate or bond" [] is_a: NBO:0000146 ! mating receptivity created_by: Luke Slater [Term] id: NBO:0020242 name: build display structure def: "Creation of or modification of a structure or area that is used in attraction of mates." [] is_a: NBO:0000147 ! sexual display behavior created_by: Luke Slater [Term] id: NBO:0020245 name: mimicry enhancement def: "Behaviors, anatomical structures, or signals that imitate aposematic animals, plants, or inanimate objects that are undesirable to predators of performer." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020251 name: promote confusion def: "Erratic movements or similar behaviors that would confuse a predator." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020253 name: mating appeasement def: "Behavior that serves to demonstrate non-aggressive intent by one member of a courting or potentially mating pair to the other." [] is_a: NBO:0000077 ! courtship behavior created_by: Luke Slater [Term] id: NBO:0020254 name: sexual harassment def: "Any of several behaviors directed towards one animal unwilling to mate by another eager to do so." [] is_a: NBO:0000010 ! reproductive behavior created_by: Luke Slater [Term] id: NBO:0020255 name: displacement behavior def: "An acitvity that seems irrelevant to its behavioral context to a human observer and often occurs when its performer is in a conflict situation." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020264 name: courtship feeding def: "Provision of food to a potential mate" [] is_a: NBO:0000077 ! courtship behavior created_by: Luke Slater [Term] id: NBO:0020266 name: spermatophore deposition def: "Deposition of spermatophore either on substrate or in body of female." [] is_a: NBO:0020066 ! gamete release function created_by: Luke Slater [Term] id: NBO:0020268 name: flee def: "Depart [from] current location of predator." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020272 name: hunt for mate def: "Active searching of potential mate" [] is_a: NBO:0020084 ! mate finding behavior created_by: Luke Slater [Term] id: NBO:0020273 name: breeding site selection def: "Actions resulting in establishment or use of one locale for reproductive activity." [] is_a: NBO:0000014 ! mating behavior created_by: Luke Slater [Term] id: NBO:0020279 name: appeasement def: "Behaviors that appear to signifiy lack of hostility and to reduce chances of attack." [] is_a: NBO:0000121 ! agonistic behavior created_by: Luke Slater [Term] id: NBO:0020281 name: mate sampling def: "General category of behaviors including sampling of medium to detect presence of possible mates, and sampling of encountered individuals to determine mate suitability." [] is_a: NBO:0020084 ! mate finding behavior created_by: Luke Slater [Term] id: NBO:0020282 name: nutrient acquisition def: "Behaviors related to acquisition and utilization of external resources." [] is_a: NBO:0000235 ! hunger motivation behavior created_by: Luke Slater [Term] id: NBO:0020286 name: food extraction def: "Removal of food items from location by use of appendage or tool." [] is_a: NBO:0020291 ! nutrient preparation created_by: Luke Slater [Term] id: NBO:0020287 name: aposematism def: "Conspicuous postures or signals (often coloration) that potential predators learn to associate with strong defense mechanisms of performer" [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020289 name: (predator) detection notification def: "Postures or signals that can communicate to predator that it has been detected by performer." [] is_a: NBO:0000636 ! protective behavior created_by: Luke Slater [Term] id: NBO:0020291 name: nutrient preparation def: "Behavior that precedes and facilitates attaining food." [] is_a: NBO:0000235 ! hunger motivation behavior created_by: Luke Slater [Term] id: NBO:0020292 name: capturing behaviour def: "Suite of behaviors involved in securing a prey item once it has been located." [] is_a: NBO:0000089 ! predator behavior created_by: Luke Slater [Term] id: NBO:0020293 name: capturing prey def: "Behaviors that result in ending flight of prey with successful predation." [] is_a: NBO:0020292 ! capturing behaviour created_by: Luke Slater [Term] id: NBO:0020294 name: caching behavior def: "The act of putting a food resource in a location in which it can be stored or protected until a future time." [] is_a: NBO:0020068 ! food storage created_by: Luke Slater [Term] id: NBO:0020295 name: food processing def: "Behaviors that prepare food for consumption, such as nut-cracking or peeling." [] is_a: NBO:0020291 ! nutrient preparation created_by: Luke Slater [Term] id: NBO:0020296 name: scrounge def: "Uninvited taking of food from another animal." [] is_a: NBO:0020177 ! social acquisition of food created_by: Luke Slater [Term] id: NBO:0020297 name: scavenge def: "Behavior associated with locating and acquiring food that has been killed or procured by another animal." [] is_a: NBO:0020177 ! social acquisition of food created_by: Luke Slater [Term] id: NBO:0020298 name: sexual interference def: "Usually interference by members of one sex in the completion of courtship or mating activities by one or more members of the same sex." [] is_a: NBO:0000010 ! reproductive behavior created_by: Luke Slater [Term] id: NBO:0020299 name: mate rejection def: "Behavior associated with refusing courtship or solicitation behaviors by avoidance, retreat, or other active repulsion of suitor." [] is_a: NBO:0000010 ! reproductive behavior created_by: Luke Slater [Term] id: NBO:0040000 name: aggregation behavior def: "A behavior associated with the gathering of organisms together in some locality. [Wikipedia:Aggregation_(ethology)]" [] is_a: NBO:0000011 ! social behavior created_by: https://orcid.org/0000-0002-9611-1279 [Term] id: NBO:0040001 name: shoaling behavior def: "A type of aggregation behavior in which organisms (especially fish or tadpoles) come together in an interactive way, aware of the other members of the group as shown by the way they adjust their behavior. [Wikipedia:Shoaling_and_schooling]" [] is_a: NBO:0040000 ! aggregation behavior created_by: https://orcid.org/0000-0002-9611-1279 [Term] id: NBO:0040002 name: schooling behavior def: "A type of shoaling behavior in which organisms (especially fish or tadpoles) are tightly organized and move in the same direction in a coordinated manner. [Wikipedia:Shoaling_and_schooling]" [] is_a: NBO:0040001 ! shoaling behavior created_by: https://orcid.org/0000-0002-9611-1279 [Term] id: NBO:0040003 name: escape behavior def: "A behavior in which action is rapidly taken by an organism in response to possible predation, examples of which include camouflage, freezing behavior, and fleeing. [Wikipedia:Escape_response]" [] synonym: "escape reaction" EXACT [] synonym: "escape response" EXACT [] is_a: NBO:0000087 ! antipredation behavior is_a: NBO:0000121 ! agonistic behavior created_by: https://orcid.org/0000-0002-9611-1279 [Term] id: NBO:0040004 name: surface breathing def: "A behavior involving an organism (especially fish or tadpoles) breathing at or near the surface of water where the concentration of dissolved oxygen is highest. [NBO:EJS]" [] is_a: NBO:0000008 ! rhythmic behavior is_a: NBO:0000469 ! stress related behavior created_by: https://orcid.org/0000-0002-9611-1279 [Term] id: NBO:0040005 name: visually guided collision avoidance behavior def: "A behavior involving avoidance of or escape from approaching visual stimuli, threats, or objects which are on a collision course. [PMID:23364572]" [] is_a: NBO:0000635 ! avoidance behavior created_by: https://orcid.org/0000-0002-9611-1279 [Term] id: NBO:0045000 name: tobacco consumption def: "Any habitual use of the tobacco plant leaf and its products." [] is_a: NBO:0001845 ! consumption behavior property_value: http://purl.org/dc/elements/1.1/date "2020-01-27T20:46:57Z" xsd:dateTime created_by: http://orcid.org/0000-0001-7941-2961 [Term] id: NBO:0045001 name: tobacco chewing behavior def: "A behavior of chewing a type of smokeless tobacco maked from cured tobacco leaves. Often the tobacco is left in the mouth and chewed but the leaves are not swallowed." [] synonym: "spit tobacco consumption" EXACT [] is_a: NBO:0045000 ! tobacco consumption property_value: http://purl.org/dc/elements/1.1/date "2020-01-27T20:51:17Z" xsd:dateTime created_by: http://orcid.org/0000-0001-7941-2961 [Term] id: NBO:0045002 name: tobacco smoking behavior def: "The inhalation and exhalation of tobacco smoke." [] is_a: NBO:0015005 ! smoking behavior is_a: NBO:0045000 ! tobacco consumption property_value: http://purl.org/dc/elements/1.1/date "2020-01-27T20:51:34Z" xsd:dateTime created_by: http://orcid.org/0000-0001-7941-2961 [Term] id: NBO:0045003 name: tobacco vaping behavior def: "The inhalation and exhalation of tobacco aerosol, referred to as vapor, which is produced by an e-cigarette or other device." [] is_a: NBO:0045000 ! tobacco consumption property_value: http://purl.org/dc/elements/1.1/date "2020-01-27T20:51:58Z" xsd:dateTime created_by: http://orcid.org/0000-0001-7941-2961 [Term] id: NBO:0045004 name: cannabis consumption is_a: NBO:0001845 ! consumption behavior property_value: http://purl.org/dc/elements/1.1/date "2020-01-27T21:03:19Z" xsd:dateTime created_by: http://orcid.org/0000-0001-7941-2961 [Term] id: NBO:0045005 name: cannabis smoking behavior def: "The inhalation and exhalation of marijuana smoke." [] synonym: "marijuana smoking behavior" EXACT [] synonym: "pot smoking behavior" EXACT [] synonym: "weed smoking behavior" EXACT [] is_a: NBO:0015005 ! smoking behavior is_a: NBO:0045004 ! cannabis consumption property_value: http://purl.org/dc/elements/1.1/date "2020-01-27T21:04:14Z" xsd:dateTime created_by: http://orcid.org/0000-0001-7941-2961 [Term] id: NBO:0045006 name: cannabis vaping behavior def: "The inhalation and exhalation of cannabis aerosol, referred to as vapor, which is produced by an e-cigarette or other device." [] synonym: "marijuana vaping behavior" EXACT [] synonym: "pot vaping behavior" EXACT [] synonym: "weed vaping behavior" EXACT [] is_a: NBO:0045004 ! cannabis consumption property_value: http://purl.org/dc/elements/1.1/date "2020-01-27T21:04:28Z" xsd:dateTime created_by: http://orcid.org/0000-0001-7941-2961 [Term] id: NBO:0045007 name: cannabis oil consumption def: "The consuming of cannabis through eating or applying the oil sublingually." [] synonym: "marijuana oil consumption" EXACT [] is_a: NBO:0045004 ! cannabis consumption property_value: http://purl.org/dc/elements/1.1/date "2020-01-27T21:04:49Z" xsd:dateTime created_by: http://orcid.org/0000-0001-7941-2961 [Term] id: NBO:0050000 name: grazing behaviour namespace: behavior_ontology def: "A feeding behavior during which an animal ingests biomass produced by a plant or other primary producer" [] xref: https://en.wikipedia.org/wiki/Grazing is_a: NBO:0000079 ! feeding behavior property_value: http://purl.org/dc/elements/1.1/date "2017-09-14T19:12:10+09:00" xsd:dateTime created_by: http://orcid.org/0000-0002-1816-4260 created_by: http://orcid.org/0000-0002-4366-3088 [Term] id: NBO:0050001 name: inchworming behavior namespace: behavior_ontology def: "Behavior related to the movement of an organism from one location to another using an inchworm like motion. This motion consists of extending the front part of the body and pulling the rear along the surface to meet the front." [] synonym: "inchworm-like locomotion" EXACT [] synonym: "inchworming" EXACT [] is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-3528-5267" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2020-02-05T20:14:32Z" xsd:string created_by: Sofia Robb [Term] id: NBO:0050002 name: circling behavior namespace: behavior_ontology def: "Behavior related to the repeating or looping movement of the whole organism along a circular or round path." [] synonym: "circling" EXACT [] synonym: "circling locomotion" EXACT [] is_a: NBO:0000013 ! locomotory behavior property_value: http://purl.org/dc/elements/1.1/contributor "http://orcid.org/0000-0002-3528-5267" xsd:string property_value: http://purl.org/dc/elements/1.1/date "2020-02-05T20:14:32Z" xsd:string created_by: Sofia Robb [Term] id: NBO:0070000 name: autotomy namespace: behavior_ontology def: "Protective behavior that sheds or discards an animal's body part." [DOI:10.1093/beheco/arl010] comment: This is most often understood to mean an appendage such as a lizard's tail, or an insect's leg, which may already be in the clutches of a predator, fouled in a portion of molted cuticle, or caught in a spider's web. Some animals can even shed a body part spontaneously, perhaps to distract a predator. But some echinoderms can autotomize part of their digestive tract whilst some mammals can slough off some skin, which are not so much appendages as organs, yet with the same effects. is_a: NBO:0000636 ! protective behavior property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/elements/1.1/date "2023-04-23" xsd:string property_value: source "Tara Lynne Maginnis, The costs of autotomy and regeneration in animals: a review and framework for future research, Behavioral Ecology, Volume 17, Issue 5, September/October 2006, Pages 857–872" xsd:string [Term] id: NBO:0070001 name: migration namespace: behavior_ontology def: "Rhythmic behavior that involves cue-initiated, persistent, direct, focused movement between habitats." [ISBN:0199640394] synonym: "Movement ecology" RELATED [] is_a: NBO:0000008 ! rhythmic behavior property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/terms/date "2023-04-22T14:17:43Z" xsd:dateTime property_value: source "Dingle H. Migration: the biology of life on the move. Oxford University Press, USA; 2014." xsd:string [Term] id: NBO:0070002 name: diel vertical migration namespace: behavior_ontology def: "Migration that involves regular movement up and down in the water column." [DOI:10.1111/brv.12715] is_a: NBO:0070001 ! migration property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2908-3327 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/terms/date "2023-04-22T14:41:53Z" xsd:dateTime property_value: source "Bandara K, Varpe Ø, Wijewardene L, Tverberg V, Eiane K. Two hundred years of zooplankton vertical migration research. Biological Reviews. 2021 Aug;96(4):1547-89." xsd:string [Term] id: NBO:0070003 name: geographical migration namespace: behavior_ontology def: "Migration that involves regular movement laterally between distant ranges in seasonal cycles." [DOI:10.1146/annurev-ecolsys-012021-031035] is_a: NBO:0070001 ! migration property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/elements/1.1/date "2023-05-01T14:41:27Z" xsd:dateTime property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2908-3327 [Term] id: NBO:0070004 name: stotting namespace: behavior_ontology def: "Display that involves taking all four legs off the ground simultaneously and holding the legs stiff and straight." [DOI:10.1016/S0003-3472(86)80051-3] synonym: "pronking" EXACT [] is_a: NBO:0020077 ! display condition (to predator) property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-2908-332 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-4277-2151 property_value: http://purl.org/dc/terms/date "2023-04-24T19:52:42Z" xsd:dateTime property_value: source "Caro TM. The functions of stotting: a review of the hypotheses. Animal Behaviour. 1986 Jun 1;34(3):649-62." xsd:string [Term] id: NCBITaxon:1 name: root [Term] id: NCBITaxon:10066 name: Muridae is_a: NCBITaxon:337687 ! Muroidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:10114 name: Rattus is_a: NCBITaxon:39107 ! Murinae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:105389 name: Sedentaria is_a: NCBITaxon:6341 ! Polychaeta property_value: has_rank NCBITaxon:subclass [Term] id: NCBITaxon:105391 name: Canalipalpata is_a: NCBITaxon:105389 ! Sedentaria property_value: has_rank NCBITaxon:infraclass [Term] id: NCBITaxon:110814 name: Xenoturbellida is_a: NCBITaxon:1312402 ! Xenacoelomorpha property_value: has_rank NCBITaxon:subphylum [Term] id: NCBITaxon:110815 name: Xenoturbella is_a: NCBITaxon:1547233 ! Xenoturbellidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:117570 name: Teleostomi is_a: NCBITaxon:7776 ! Gnathostomata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:117571 name: Euteleostomi is_a: NCBITaxon:117570 ! Teleostomi property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:119089 name: Chromadorea is_a: NCBITaxon:6231 ! Nematoda property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:1206794 name: Ecdysozoa is_a: NCBITaxon:33317 ! Protostomia property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1206795 name: Lophotrochozoa is_a: NCBITaxon:2697495 ! Spiralia property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:123365 name: Neoteleostei is_a: NCBITaxon:1489388 ! Euteleosteomorpha property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:123366 name: Eurypterygia is_a: NCBITaxon:123365 ! Neoteleostei property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:123367 name: Ctenosquamata is_a: NCBITaxon:123366 ! Eurypterygia property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:123368 name: Acanthomorphata is_a: NCBITaxon:123367 ! Ctenosquamata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:123369 name: Euacanthomorphacea is_a: NCBITaxon:123368 ! Acanthomorphata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1312402 name: Xenacoelomorpha is_a: NCBITaxon:33213 ! Bilateria property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:131567 name: cellular organisms is_a: NCBITaxon:1 ! root [Term] id: NCBITaxon:1329799 name: Archelosauria is_a: NCBITaxon:32561 ! Sauria property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1329911 name: Toxicofera is_a: NCBITaxon:1329912 ! Episquamata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1329912 name: Episquamata is_a: NCBITaxon:1329950 ! Unidentata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1329950 name: Unidentata is_a: NCBITaxon:1329961 ! Bifurcata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1329961 name: Bifurcata is_a: NCBITaxon:8509 ! Squamata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1338369 name: Dipnotetrapodomorpha is_a: NCBITaxon:8287 ! Sarcopterygii property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1437010 name: Boreoeutheria is_a: NCBITaxon:9347 ! Eutheria property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:147099 name: Acoelomorpha is_a: NCBITaxon:1312402 ! Xenacoelomorpha property_value: has_rank NCBITaxon:subphylum [Term] id: NCBITaxon:1489341 name: Osteoglossocephalai is_a: NCBITaxon:32443 ! Teleostei property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1489388 name: Euteleosteomorpha is_a: NCBITaxon:186625 ! Clupeocephala property_value: has_rank NCBITaxon:cohort [Term] id: NCBITaxon:1489872 name: Percomorphaceae is_a: NCBITaxon:123369 ! Euacanthomorphacea property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1489922 name: Eupercaria is_a: NCBITaxon:1489872 ! Percomorphaceae property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:1547233 name: Xenoturbellidae is_a: NCBITaxon:110814 ! Xenoturbellida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:186623 name: Actinopteri is_a: NCBITaxon:7898 ! Actinopterygii property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:186625 name: Clupeocephala is_a: NCBITaxon:1489341 ! Osteoglossocephalai [Term] id: NCBITaxon:186626 name: Otophysi is_a: NCBITaxon:32519 ! Ostariophysi property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:186627 name: Cypriniphysae is_a: NCBITaxon:186626 ! Otophysi property_value: has_rank NCBITaxon:superorder [Term] id: NCBITaxon:186634 name: Otomorpha is_a: NCBITaxon:186625 ! Clupeocephala property_value: has_rank NCBITaxon:cohort [Term] id: NCBITaxon:1963758 name: Myomorpha is_a: NCBITaxon:9989 ! Rodentia property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:197562 name: Pancrustacea is_a: NCBITaxon:197563 ! Mandibulata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:197563 name: Mandibulata is_a: NCBITaxon:6656 ! Arthropoda property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:207598 name: Homininae is_a: NCBITaxon:9604 ! Hominidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:2301116 name: Rhabditina is_a: NCBITaxon:6236 ! Rhabditida property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:2301119 name: Rhabditomorpha is_a: NCBITaxon:2301116 ! Rhabditina property_value: has_rank NCBITaxon:infraorder [Term] id: NCBITaxon:262014 name: Xenopus is_a: NCBITaxon:8353 ! Xenopus property_value: has_rank NCBITaxon:subgenus [Term] id: NCBITaxon:2697495 name: Spiralia is_a: NCBITaxon:33317 ! Protostomia property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:2743709 name: Danionidae is_a: NCBITaxon:30727 ! Cyprinoidei property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:2743711 name: Danioninae is_a: NCBITaxon:2743709 ! Danionidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:2759 name: Eukaryota is_a: NCBITaxon:131567 ! cellular organisms property_value: has_rank NCBITaxon:superkingdom [Term] id: NCBITaxon:30319 name: Pipoidea is_a: NCBITaxon:8342 ! Anura property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:30727 name: Cyprinoidei is_a: NCBITaxon:7952 ! Cypriniformes property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:31022 name: Tetraodontiformes is_a: NCBITaxon:1489922 ! Eupercaria property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:31028 name: Tetraodontoidei is_a: NCBITaxon:31022 ! Tetraodontiformes property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:31031 name: Tetraodontidae is_a: NCBITaxon:32517 ! Tetradontoidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:31032 name: Takifugu is_a: NCBITaxon:31031 ! Tetraodontidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:31033 name: Takifugu rubripes is_a: NCBITaxon:31032 ! Takifugu property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:314146 name: Euarchontoglires is_a: NCBITaxon:1437010 ! Boreoeutheria property_value: has_rank NCBITaxon:superorder [Term] id: NCBITaxon:314147 name: Glires is_a: NCBITaxon:314146 ! Euarchontoglires property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:314293 name: Simiiformes is_a: NCBITaxon:376913 ! Haplorrhini property_value: has_rank NCBITaxon:infraorder [Term] id: NCBITaxon:314295 name: Hominoidea is_a: NCBITaxon:9526 ! Catarrhini property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:32341 name: Sophophora is_a: NCBITaxon:7215 ! Drosophila property_value: has_rank NCBITaxon:subgenus [Term] id: NCBITaxon:32346 name: melanogaster group is_a: NCBITaxon:32341 ! Sophophora property_value: has_rank NCBITaxon:species_group [Term] id: NCBITaxon:32351 name: melanogaster subgroup is_a: NCBITaxon:32346 ! melanogaster group property_value: has_rank NCBITaxon:species_subgroup [Term] id: NCBITaxon:32443 name: Teleostei is_a: NCBITaxon:41665 ! Neopterygii property_value: has_rank NCBITaxon:infraclass [Term] id: NCBITaxon:32517 name: Tetradontoidea is_a: NCBITaxon:31028 ! Tetraodontoidei property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:32519 name: Ostariophysi is_a: NCBITaxon:186634 ! Otomorpha property_value: has_rank NCBITaxon:subcohort [Term] id: NCBITaxon:32523 name: Tetrapoda is_a: NCBITaxon:1338369 ! Dipnotetrapodomorpha property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:32524 name: Amniota is_a: NCBITaxon:32523 ! Tetrapoda property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:32525 name: Theria is_a: NCBITaxon:40674 ! Mammalia property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:32561 name: Sauria is_a: NCBITaxon:8457 ! Sauropsida property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:33154 name: Opisthokonta is_a: NCBITaxon:2759 ! Eukaryota property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:33208 name: Metazoa is_a: NCBITaxon:33154 ! Opisthokonta property_value: has_rank NCBITaxon:kingdom [Term] id: NCBITaxon:33213 name: Bilateria is_a: NCBITaxon:6072 ! Eumetazoa property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:33317 name: Protostomia is_a: NCBITaxon:33213 ! Bilateria property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:33340 name: Neoptera is_a: NCBITaxon:7496 ! Pterygota property_value: has_rank NCBITaxon:infraclass [Term] id: NCBITaxon:33392 name: Endopterygota is_a: NCBITaxon:33340 ! Neoptera property_value: has_rank NCBITaxon:cohort [Term] id: NCBITaxon:33511 name: Deuterostomia is_a: NCBITaxon:33213 ! Bilateria property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:337687 name: Muroidea is_a: NCBITaxon:1963758 ! Myomorpha property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:376913 name: Haplorrhini is_a: NCBITaxon:9443 ! Primates property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:39107 name: Murinae is_a: NCBITaxon:10066 ! Muridae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:40674 name: Mammalia is_a: NCBITaxon:32524 ! Amniota property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:41324 name: Siboglinidae is_a: NCBITaxon:6362 ! Sabellida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:41665 name: Neopterygii is_a: NCBITaxon:186623 ! Actinopteri property_value: has_rank NCBITaxon:subclass [Term] id: NCBITaxon:41666 name: Batrachia is_a: NCBITaxon:8292 ! Amphibia property_value: has_rank NCBITaxon:superorder [Term] id: NCBITaxon:436486 name: Dinosauria is_a: NCBITaxon:8492 ! Archosauria property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:436489 name: Saurischia is_a: NCBITaxon:436486 ! Dinosauria property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:436491 name: Theropoda is_a: NCBITaxon:436489 ! Saurischia property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:436492 name: Coelurosauria is_a: NCBITaxon:436491 ! Theropoda property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:43733 name: Muscomorpha is_a: NCBITaxon:7203 ! Brachycera property_value: has_rank NCBITaxon:infraorder [Term] id: NCBITaxon:43738 name: Schizophora is_a: NCBITaxon:480117 ! Cyclorrhapha [Term] id: NCBITaxon:43741 name: Acalyptratae is_a: NCBITaxon:43738 ! Schizophora [Term] id: NCBITaxon:43746 name: Ephydroidea is_a: NCBITaxon:43741 ! Acalyptratae property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:43845 name: Drosophilinae is_a: NCBITaxon:7214 ! Drosophilidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:46877 name: Drosophilini is_a: NCBITaxon:43845 ! Drosophilinae property_value: has_rank NCBITaxon:tribe [Term] id: NCBITaxon:480117 name: Cyclorrhapha is_a: NCBITaxon:480118 ! Eremoneura property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:480118 name: Eremoneura is_a: NCBITaxon:43733 ! Muscomorpha property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:50557 name: Insecta is_a: NCBITaxon:6960 ! Hexapoda property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:55879 name: Rhabditoidea is_a: NCBITaxon:2301119 ! Rhabditomorpha property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:55885 name: Peloderinae is_a: NCBITaxon:6243 ! Rhabditidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:6040 name: Porifera is_a: NCBITaxon:33208 ! Metazoa property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:6072 name: Eumetazoa is_a: NCBITaxon:33208 ! Metazoa property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:6073 name: Cnidaria is_a: NCBITaxon:6072 ! Eumetazoa property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:6157 name: Platyhelminthes is_a: NCBITaxon:1206795 ! Lophotrochozoa property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:6231 name: Nematoda is_a: NCBITaxon:1206794 ! Ecdysozoa property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:6236 name: Rhabditida is_a: NCBITaxon:119089 ! Chromadorea property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:6237 name: Caenorhabditis is_a: NCBITaxon:55885 ! Peloderinae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:6239 name: Caenorhabditis elegans is_a: NCBITaxon:6237 ! Caenorhabditis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:6243 name: Rhabditidae is_a: NCBITaxon:55879 ! Rhabditoidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:6340 name: Annelida is_a: NCBITaxon:1206795 ! Lophotrochozoa property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:6341 name: Polychaeta is_a: NCBITaxon:6340 ! Annelida property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:6362 name: Sabellida is_a: NCBITaxon:105391 ! Canalipalpata property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:6656 name: Arthropoda is_a: NCBITaxon:88770 ! Panarthropoda property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:6960 name: Hexapoda is_a: NCBITaxon:197562 ! Pancrustacea property_value: has_rank NCBITaxon:subphylum [Term] id: NCBITaxon:7147 name: Diptera is_a: NCBITaxon:33392 ! Endopterygota property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:7203 name: Brachycera is_a: NCBITaxon:7147 ! Diptera property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:7214 name: Drosophilidae is_a: NCBITaxon:43746 ! Ephydroidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:7215 name: Drosophila is_a: NCBITaxon:46877 ! Drosophilini property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:7227 name: Drosophila melanogaster is_a: NCBITaxon:32351 ! melanogaster subgroup property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:7496 name: Pterygota is_a: NCBITaxon:85512 ! Dicondylia property_value: has_rank NCBITaxon:subclass [Term] id: NCBITaxon:7711 name: Chordata is_a: NCBITaxon:33511 ! Deuterostomia property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:7712 name: Tunicata is_a: NCBITaxon:7711 ! Chordata property_value: has_rank NCBITaxon:subphylum [Term] id: NCBITaxon:7742 name: Vertebrata is_a: NCBITaxon:89593 ! Craniata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:7776 name: Gnathostomata is_a: NCBITaxon:7742 ! Vertebrata property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:7777 name: Chondrichthyes is_a: NCBITaxon:7776 ! Gnathostomata property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:7863 name: Holocephali is_a: NCBITaxon:7777 ! Chondrichthyes property_value: has_rank NCBITaxon:subclass [Term] id: NCBITaxon:7864 name: Chimaeriformes is_a: NCBITaxon:7863 ! Holocephali property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:7878 name: Dipnomorpha is_a: NCBITaxon:1338369 ! Dipnotetrapodomorpha property_value: has_rank NCBITaxon:subclass [Term] id: NCBITaxon:7898 name: Actinopterygii is_a: NCBITaxon:117571 ! Euteleostomi property_value: has_rank NCBITaxon:superclass [Term] id: NCBITaxon:7952 name: Cypriniformes is_a: NCBITaxon:186627 ! Cypriniphysae property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:7954 name: Danio is_a: NCBITaxon:2743711 ! Danioninae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:7955 name: Danio rerio is_a: NCBITaxon:7954 ! Danio property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:8287 name: Sarcopterygii is_a: NCBITaxon:117571 ! Euteleostomi property_value: has_rank NCBITaxon:superclass [Term] id: NCBITaxon:8292 name: Amphibia is_a: NCBITaxon:32523 ! Tetrapoda property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:8342 name: Anura is_a: NCBITaxon:41666 ! Batrachia property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:8352 name: Pipidae is_a: NCBITaxon:30319 ! Pipoidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:8353 name: Xenopus is_a: NCBITaxon:8360 ! Xenopodinae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:8355 name: Xenopus laevis is_a: NCBITaxon:262014 ! Xenopus property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:8360 name: Xenopodinae is_a: NCBITaxon:8352 ! Pipidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:8457 name: Sauropsida is_a: NCBITaxon:32524 ! Amniota property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:8492 name: Archosauria is_a: NCBITaxon:1329799 ! Archelosauria property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:8504 name: Lepidosauria is_a: NCBITaxon:32561 ! Sauria property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:8505 name: Sphenodontia is_a: NCBITaxon:8504 ! Lepidosauria property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:8506 name: Sphenodontidae is_a: NCBITaxon:8505 ! Sphenodontia property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:8507 name: Sphenodon is_a: NCBITaxon:8506 ! Sphenodontidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:8509 name: Squamata is_a: NCBITaxon:8504 ! Lepidosauria property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:85512 name: Dicondylia is_a: NCBITaxon:50557 ! Insecta property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:8570 name: Serpentes is_a: NCBITaxon:1329911 ! Toxicofera property_value: has_rank NCBITaxon:infraorder [Term] id: NCBITaxon:8782 name: Aves is_a: NCBITaxon:436492 ! Coelurosauria property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:8783 name: Palaeognathae is_a: NCBITaxon:8782 ! Aves property_value: has_rank NCBITaxon:superorder [Term] id: NCBITaxon:8798 name: Struthioniformes is_a: NCBITaxon:8783 ! Palaeognathae property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:8799 name: Struthionidae is_a: NCBITaxon:8798 ! Struthioniformes property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:8800 name: Struthio is_a: NCBITaxon:8799 ! Struthionidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:8801 name: Struthio camelus is_a: NCBITaxon:8800 ! Struthio property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:8825 name: Neognathae is_a: NCBITaxon:8782 ! Aves property_value: has_rank NCBITaxon:infraclass [Term] id: NCBITaxon:88770 name: Panarthropoda is_a: NCBITaxon:1206794 ! Ecdysozoa property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:8929 name: Columbiformes is_a: NCBITaxon:8825 ! Neognathae property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:8930 name: Columbidae is_a: NCBITaxon:8929 ! Columbiformes property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:89593 name: Craniata is_a: NCBITaxon:7711 ! Chordata property_value: has_rank NCBITaxon:subphylum [Term] id: NCBITaxon:9254 name: Prototheria is_a: NCBITaxon:40674 ! Mammalia property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:9255 name: Monotremata is_a: NCBITaxon:9254 ! Prototheria property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:9259 name: Tachyglossidae is_a: NCBITaxon:9255 ! Monotremata property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:9347 name: Eutheria is_a: NCBITaxon:32525 ! Theria property_value: has_rank NCBITaxon:clade [Term] id: NCBITaxon:9443 name: Primates is_a: NCBITaxon:314146 ! Euarchontoglires property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:9526 name: Catarrhini is_a: NCBITaxon:314293 ! Simiiformes property_value: has_rank NCBITaxon:parvorder [Term] id: NCBITaxon:9604 name: Hominidae is_a: NCBITaxon:314295 ! Hominoidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:9605 name: Homo is_a: NCBITaxon:207598 ! Homininae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:9606 name: Homo sapiens is_a: NCBITaxon:9605 ! Homo property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:9989 name: Rodentia is_a: NCBITaxon:314147 ! Glires property_value: has_rank NCBITaxon:order [Term] id: PATO:0000001 name: characteristic name: quality relationship: BFO:0000051 PATO:0000001 {all_only="true"} ! has part characteristic property_value: seeAlso "https://github.com/OBOFoundry/COB/issues/65" xsd:string property_value: seeAlso "https://github.com/oborel/obo-relations/pull/284" xsd:string [Term] id: PATO:0000014 name: color is_a: PATO:0000051 ! morphology is_a: PATO:0001300 ! optical quality [Term] id: PATO:0000025 name: composition comment: For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood). is_a: PATO:0000141 ! structure [Term] id: PATO:0000040 name: distance is_a: PATO:0001018 ! physical quality [Term] id: PATO:0000044 name: frequency is_a: PATO:0050000 ! rate of occurence [Term] id: PATO:0000051 name: morphology is_a: PATO:0001241 ! physical object quality [Term] id: PATO:0000052 name: shape comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. is_a: PATO:0000051 ! morphology [Term] id: PATO:0000068 name: qualitative comment: TODO: define this or obsolete it and move children somewhere else. is_a: PATO:0000001 ! characteristic [Term] id: PATO:0000069 name: deviation (from_normal) is_a: PATO:0000068 ! qualitative [Term] id: PATO:0000070 name: amount comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. is_a: PATO:0000068 ! qualitative relationship: RO:0015012 PATO:0001555 ! reciprocal of has number of [Term] id: PATO:0000117 name: size is_a: PATO:0000051 ! morphology [Term] id: PATO:0000125 name: mass comment: For any biological use of PATO, the concept that should be used is 'mass' and not 'weight'. For example, increased weight of an organism. is_a: PATO:0001018 ! physical quality relationship: RO:0000052 BFO:0000040 ! characteristic of material entity [Term] id: PATO:0000136 name: closure is_a: PATO:0000051 ! morphology [Term] id: PATO:0000141 name: structure is_a: PATO:0000051 ! morphology [Term] id: PATO:0000146 name: temperature is_a: PATO:0001018 ! physical quality [Term] id: PATO:0000150 name: texture is_a: PATO:0000051 ! morphology [Term] id: PATO:0000161 name: rate is_a: PATO:0002062 ! physical quality of a process [Term] id: PATO:0000186 name: behavioral quality is_a: PATO:0001995 ! organismal quality [Term] id: PATO:0000188 name: coordination is_a: PATO:0000186 ! behavioral quality [Term] id: PATO:0000261 name: maturity is_a: PATO:0001995 ! organismal quality [Term] id: PATO:0000374 name: increased distance is_a: PATO:0000040 ! distance is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0000040 ! distance intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0000375 [Term] id: PATO:0000375 name: decreased distance is_a: PATO:0000040 ! distance is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0000040 ! distance intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0000374 [Term] id: PATO:0000380 name: increased frequency is_a: PATO:0000044 ! frequency is_a: PATO:0055003 ! increased rate of occurrence intersection_of: PATO:0000044 ! frequency intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0000381 [Term] id: PATO:0000381 name: decreased frequency is_a: PATO:0000044 ! frequency is_a: PATO:0055004 ! decreased rate of occurrence intersection_of: PATO:0000044 ! frequency intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0000380 [Term] id: PATO:0000402 name: branched is_a: PATO:0002009 ! branchiness property_value: RO:0002604 PATO:0000414 [Term] id: PATO:0000407 name: flat is_a: PATO:0002254 ! flattened [Term] id: PATO:0000411 name: circular is_a: PATO:0000947 ! elliptic [Term] id: PATO:0000461 name: normal is_a: PATO:0000068 ! qualitative property_value: RO:0002604 PATO:0000460 [Term] id: PATO:0000462 name: absent comment: We recommend using the new absent terms (physical absence, absent anatomical entity, or absent process) instead of this class. This is a legacy term and will ultimately be obsoleted.\nSee https://github.com/pato-ontology/pato/issues/331. is_a: PATO:0000070 ! amount disjoint_from: PATO:0000467 ! present relationship: RO:0015012 PATO:0001558 ! reciprocal of lacking processual parts relationship: RO:0015012 PATO:0002000 ! reciprocal of lacks all parts of type property_value: RO:0002604 PATO:0000467 [Term] id: PATO:0000467 name: present is_a: PATO:0000070 ! amount property_value: RO:0002604 PATO:0000462 [Term] id: PATO:0000470 name: increased amount is_a: PATO:0000467 ! present is_a: PATO:0002300 ! increased quality intersection_of: PATO:0000070 ! amount intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0001997 [Term] id: PATO:0000498 name: increased duration is_a: PATO:0001309 ! duration is_a: PATO:0002304 ! increased process quality intersection_of: PATO:0001309 ! duration intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0000499 [Term] id: PATO:0000499 name: decreased duration is_a: PATO:0001309 ! duration is_a: PATO:0002302 ! decreased process quality intersection_of: PATO:0001309 ! duration intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0000498 [Term] id: PATO:0000586 name: increased size is_a: PATO:0000117 ! size is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0000117 ! size intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0000587 [Term] id: PATO:0000587 name: decreased size is_a: PATO:0000117 ! size is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0000117 ! size intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0000586 [Term] id: PATO:0000608 name: closed is_a: PATO:0000136 ! closure property_value: RO:0002604 PATO:0000610 [Term] id: PATO:0000770 name: uncoordinated is_a: PATO:0000188 ! coordination property_value: RO:0002604 PATO:0000769 [Term] id: PATO:0000911 name: decreased rate is_a: PATO:0000161 ! rate is_a: PATO:0002302 ! decreased process quality intersection_of: PATO:0000161 ! rate intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0000912 [Term] id: PATO:0000912 name: increased rate is_a: PATO:0000161 ! rate is_a: PATO:0002304 ! increased process quality intersection_of: PATO:0000161 ! rate intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0000911 [Term] id: PATO:0000947 name: elliptic is_a: PATO:0002318 ! superelliptic [Term] id: PATO:0000957 name: opacity is_a: PATO:0001300 ! optical quality [Term] id: PATO:0000963 name: opaque is_a: PATO:0000957 ! opacity property_value: RO:0002604 PATO:0000964 [Term] id: PATO:0000964 name: transparent is_a: PATO:0000957 ! opacity property_value: RO:0002604 PATO:0000963 [Term] id: PATO:0000992 name: viscosity is_a: PATO:0001548 ! quality of a liquid [Term] id: PATO:0000998 name: viscous is_a: PATO:0000992 ! viscosity [Term] id: PATO:0001018 name: physical quality is_a: PATO:0001241 ! physical object quality [Term] id: PATO:0001031 name: elasticity is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001171 name: elastic is_a: PATO:0001031 ! elasticity property_value: RO:0002604 PATO:0001172 [Term] id: PATO:0001185 name: larval is_a: PATO:0000261 ! maturity [Term] id: PATO:0001236 name: process quality comment: See comments of relational quality of a physical entity. is_a: PATO:0000001 ! characteristic disjoint_from: PATO:0001241 ! physical object quality [Term] id: PATO:0001241 name: physical object quality comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. is_a: PATO:0000001 ! characteristic [Term] id: PATO:0001300 name: optical quality is_a: PATO:0070060 ! quality of interaction of a substance with electromagnetic radiation [Term] id: PATO:0001305 name: increased temperature is_a: PATO:0000146 ! temperature is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0000146 ! temperature intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0001306 [Term] id: PATO:0001306 name: decreased temperature is_a: PATO:0000146 ! temperature is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0000146 ! temperature intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0001305 [Term] id: PATO:0001309 name: duration is_a: PATO:0002062 ! physical quality of a process [Term] id: PATO:0001333 name: temporally extended is_a: PATO:0002304 ! increased process quality is_a: PATO:0002324 ! offset quality [Term] id: PATO:0001472 name: decreased depth is_a: PATO:0000587 ! decreased size is_a: PATO:0001595 ! depth intersection_of: PATO:0001595 ! depth intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0001596 [Term] id: PATO:0001547 name: quality of a gas is_a: PATO:0002198 ! quality of a substance [Term] id: PATO:0001548 name: quality of a liquid is_a: PATO:0002198 ! quality of a substance [Term] id: PATO:0001555 name: has number of is_a: PATO:0001241 ! physical object quality relationship: RO:0015012 PATO:0000070 ! reciprocal of amount [Term] id: PATO:0001558 name: lacking processual parts is_a: PATO:0001564 ! extra or missing processual parts relationship: RO:0015012 PATO:0000462 ! reciprocal of absent [Term] id: PATO:0001562 name: decreased mass is_a: PATO:0000125 ! mass is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0000125 ! mass intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0001563 [Term] id: PATO:0001563 name: increased mass is_a: PATO:0000125 ! mass is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0000125 ! mass intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0001562 [Term] id: PATO:0001564 name: extra or missing processual parts is_a: PATO:0001236 ! process quality [Term] id: PATO:0001579 name: contractility is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001580 name: increased contractility is_a: PATO:0001690 ! contractile is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001690 ! contractile intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0001581 [Term] id: PATO:0001581 name: decreased contractility is_a: PATO:0001690 ! contractile is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001690 ! contractile intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0001580 [Term] id: PATO:0001591 name: curvature is_a: PATO:0000052 ! shape [Term] id: PATO:0001595 name: depth is_a: PATO:0001708 ! 1-D extent [Term] id: PATO:0001596 name: increased depth is_a: PATO:0000586 ! increased size is_a: PATO:0001595 ! depth intersection_of: PATO:0001595 ! depth intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0001472 [Term] id: PATO:0001690 name: contractile comment: This refers to the disposition of the bearer. is_a: PATO:0001579 ! contractility property_value: RO:0002604 PATO:0001691 [Term] id: PATO:0001693 name: increased viscosity is_a: PATO:0000998 ! viscous is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0000998 ! viscous intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0001694 [Term] id: PATO:0001694 name: decreased viscosity is_a: PATO:0000998 ! viscous is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0000998 ! viscous intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0001693 [Term] id: PATO:0001708 name: 1-D extent is_a: PATO:0000117 ! size [Term] id: PATO:0001727 name: disposition is_a: PATO:0001241 ! physical object quality [Term] id: PATO:0001735 name: liquid configuration is_a: PATO:0001548 ! quality of a liquid [Term] id: PATO:0001863 name: chronic is_a: PATO:0001309 ! duration property_value: RO:0002604 PATO:0000389 [Term] id: PATO:0001873 name: cylindrical is_a: PATO:0002007 ! convex 3-D shape relationship: RO:0015011 PATO:0000411 ! has cross section circular [Term] id: PATO:0001987 name: saccular is_a: PATO:0002014 ! structure, cavities [Term] id: PATO:0001992 name: cellularity is_a: PATO:0001995 ! organismal quality [Term] id: PATO:0001993 name: multicellular is_a: PATO:0001992 ! cellularity [Term] id: PATO:0001995 name: organismal quality is_a: PATO:0001241 ! physical object quality [Term] id: PATO:0001997 name: decreased amount is_a: PATO:0000467 ! present is_a: PATO:0002301 ! decreased quality intersection_of: PATO:0000070 ! amount intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0000470 [Term] id: PATO:0001999 name: lacks parts or has fewer parts of type is_a: PATO:0002083 ! altered number of [Term] id: PATO:0002000 name: lacks all parts of type comment: Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. is_a: PATO:0001999 ! lacks parts or has fewer parts of type relationship: RO:0015012 PATO:0000462 ! reciprocal of absent [Term] id: PATO:0002001 name: has fewer parts of type comment: Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. is_a: PATO:0001999 ! lacks parts or has fewer parts of type is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001999 ! lacks parts or has fewer parts of type intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0002002 [Term] id: PATO:0002002 name: has extra parts of type comment: In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q= E2=finger. is_a: PATO:0002083 ! altered number of is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0002083 ! altered number of intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0002001 [Term] id: PATO:0002006 name: 2-D shape is_a: PATO:0000052 ! shape [Term] id: PATO:0002007 name: convex 3-D shape comment: Use this term or an is_a child of this term when the entire shape of the object is known. is_a: PATO:0002266 ! 3-D shape relationship: RO:0015011 PATO:0002006 ! has cross section 2-D shape property_value: RO:0002604 PATO:0002008 [Term] id: PATO:0002009 name: branchiness is_a: PATO:0000052 ! shape [Term] id: PATO:0002014 name: structure, cavities is_a: PATO:0000141 ! structure [Term] id: PATO:0002045 name: dendritic is_a: PATO:0000402 ! branched [Term] id: PATO:0002062 name: physical quality of a process is_a: PATO:0001236 ! process quality [Term] id: PATO:0002078 name: hollow is_a: PATO:0002014 ! structure, cavities [Term] id: PATO:0002083 name: altered number of is_a: PATO:0000051 ! morphology is_a: PATO:0001555 ! has number of [Term] id: PATO:0002124 name: laminar is_a: PATO:0000141 ! structure [Term] id: PATO:0002198 name: quality of a substance is_a: PATO:0001018 ! physical quality [Term] id: PATO:0002254 name: flattened comment: Becoming flat but not necessarily completely flat. is_a: PATO:0001591 ! curvature [Term] id: PATO:0002255 name: grooved is_a: PATO:0000150 ! texture [Term] id: PATO:0002266 name: 3-D shape is_a: PATO:0000052 ! shape [Term] id: PATO:0002287 name: increased elasticity is_a: PATO:0001171 ! elastic is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001171 ! elastic intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0002288 [Term] id: PATO:0002288 name: decreased elasticity is_a: PATO:0001171 ! elastic is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001171 ! elastic intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0002287 [Term] id: PATO:0002299 name: tubular is_a: PATO:0001873 ! cylindrical is_a: PATO:0002078 ! hollow [Term] id: PATO:0002300 name: increased quality is_a: PATO:0000069 ! deviation (from_normal) intersection_of: PATO:0000001 ! characteristic intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal relationship: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0002301 [Term] id: PATO:0002301 name: decreased quality is_a: PATO:0000069 ! deviation (from_normal) intersection_of: PATO:0000001 ! characteristic intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal relationship: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0002300 [Term] id: PATO:0002302 name: decreased process quality is_a: PATO:0001236 ! process quality is_a: PATO:0002301 ! decreased quality intersection_of: PATO:0001236 ! process quality intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0002304 [Term] id: PATO:0002303 name: decreased object quality is_a: PATO:0001241 ! physical object quality is_a: PATO:0002301 ! decreased quality intersection_of: PATO:0001241 ! physical object quality intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0002305 [Term] id: PATO:0002304 name: increased process quality is_a: PATO:0001236 ! process quality is_a: PATO:0002300 ! increased quality intersection_of: PATO:0001236 ! process quality intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0002302 [Term] id: PATO:0002305 name: increased object quality is_a: PATO:0001241 ! physical object quality is_a: PATO:0002300 ! increased quality intersection_of: PATO:0001241 ! physical object quality intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0002303 [Term] id: PATO:0002318 name: superelliptic is_a: PATO:0002006 ! 2-D shape [Term] id: PATO:0002323 name: temporal distribution quality is_a: PATO:0002062 ! physical quality of a process [Term] id: PATO:0002324 name: offset quality is_a: PATO:0002323 ! temporal distribution quality [Term] id: PATO:0002360 name: tendency is_a: PATO:0001727 ! disposition [Term] id: PATO:0002361 name: increased tendency is_a: PATO:0002305 ! increased object quality is_a: PATO:0002360 ! tendency intersection_of: PATO:0002360 ! tendency intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal property_value: RO:0002604 PATO:0002362 [Term] id: PATO:0002362 name: decreased tendency is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002360 ! tendency intersection_of: PATO:0002360 ! tendency intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal property_value: RO:0002604 PATO:0002361 [Term] id: PATO:0002422 name: acinar comment: Acinus is Latin for berry. is_a: PATO:0000141 ! structure [Term] id: PATO:0002462 name: collagenous is_a: PATO:0000025 ! composition [Term] id: PATO:0002468 name: distensible is_a: PATO:0015008 ! distensibility [Term] id: PATO:0010001 name: disconnected is_a: PATO:0000141 ! structure [Term] id: PATO:0015008 name: distensibility is_a: PATO:0000141 ! structure [Term] id: PATO:0050000 name: rate of occurence is_a: PATO:0000161 ! rate [Term] id: PATO:0055003 name: increased rate of occurrence is_a: PATO:0000912 ! increased rate is_a: PATO:0050000 ! rate of occurence intersection_of: PATO:0050000 ! rate of occurence intersection_of: RO:0015007 PATO:0000461 ! increased in magnitude relative to normal [Term] id: PATO:0055004 name: decreased rate of occurrence is_a: PATO:0000911 ! decreased rate is_a: PATO:0050000 ! rate of occurence intersection_of: PATO:0050000 ! rate of occurence intersection_of: RO:0015008 PATO:0000461 ! decreased in magnitude relative to normal [Term] id: PATO:0070060 name: quality of interaction of a substance with electromagnetic radiation is_a: PATO:0002198 ! quality of a substance [Term] id: RO:0002577 name: system def: "A material entity consisting of multiple components that are causally integrated." [] is_a: BFO:0000040 ! material entity property_value: IAO:0000116 "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "http://www.jbiomedsem.com/content/4/1/43" xsd:string [Term] id: UBERON:0000000 name: processual entity is_a: BFO:0000003 ! occurrent disjoint_from: UBERON:0001062 ! anatomical entity property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000005 name: chemosensory organ is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: RO:0002215 GO:0007606 ! capable of sensory perception of chemical stimulus relationship: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: BFO:0000050 UBERON:0005726 ! part of chemosensory system relationship: RO:0002215 GO:0007606 ! capable of sensory perception of chemical stimulus [Term] id: UBERON:0000006 name: islet of Langerhans is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034922 ! cell cluster relationship: BFO:0000050 UBERON:0000016 ! part of endocrine pancreas relationship: RO:0002433 UBERON:0000016 ! contributes to morphology of endocrine pancreas property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000202 FMA:76489 [Term] id: UBERON:0000009 name: submucosa is_a: UBERON:0004923 ! organ component layer relationship: BSPO:0001107 UBERON:0000344 ! mucosa relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002473 UBERON:0002384 ! composed primarily of connective tissue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png" xsd:anyURI property_value: UBPROP:0000007 "submucosal" xsd:string [Term] id: UBERON:0000010 name: peripheral nervous system is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0001016 ! part of nervous system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000012 name: somatic nervous system is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system relationship: RO:0002433 UBERON:0001016 ! contributes to morphology of nervous system [Term] id: UBERON:0000013 name: sympathetic nervous system is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system relationship: RO:0002433 UBERON:0002410 ! contributes to morphology of autonomic nervous system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: UBPROP:0000011 "has developmental contribution from NC in verteberates (https://github.com/obophenotype/uberon/wiki/The-neural-crest)" xsd:string [Term] id: UBERON:0000014 name: zone of skin is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: BFO:0000050 UBERON:0002097 ! part of skin of body relationship: BFO:0000051 UBERON:0001003 ! has part skin epidermis relationship: BFO:0000051 UBERON:0002067 ! has part dermis property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg" xsd:anyURI property_value: IAO:0000232 "Note the distinction between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" xsd:string property_value: UBPROP:0000012 "we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive" xsd:string [Term] id: UBERON:0000015 name: non-material anatomical boundary comment: Except in the case of abstracted fiat boundaries such as the midline plane of an organism, all 2D anatomical entities have a 3 dimensional projection. For example, the surface of the shell of a muscle has a distinct shape that projects into the third dimension. Note that boundaries are 2D structures. They have no thickness - and so can not be sites of gene expression or gene product localisation. For this, use boundary region terms. is_a: UBERON:0000466 ! immaterial anatomical entity property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000016 name: endocrine pancreas is_a: UBERON:0000471 ! compound organ component is_a: UBERON:0004119 ! endoderm-derived structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system relationship: BFO:0000050 UBERON:0001264 ! part of pancreas relationship: RO:0002202 UBERON:0003923 ! develops from dorsal pancreatic bud relationship: RO:0002215 GO:0030073 ! capable of insulin secretion relationship: RO:0002215 GO:0070091 ! capable of glucagon secretion relationship: RO:0002215 GO:0070253 ! capable of somatostatin secretion relationship: RO:0002433 UBERON:0001264 ! contributes to morphology of pancreas relationship: RO:0002473 UBERON:0000006 ! composed primarily of islet of Langerhans property_value: IAO:0000116 "create a separate class for distributed pancreas, eg cyclostomes?" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000017 name: exocrine pancreas is_a: UBERON:0000409 ! serous gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element relationship: BFO:0000050 UBERON:0001264 ! part of pancreas relationship: BFO:0000051 UBERON:0001263 ! has part pancreatic acinus relationship: BFO:0000051 UBERON:0007329 ! has part pancreatic duct relationship: RO:0002202 UBERON:0003924 ! develops from ventral pancreatic bud relationship: RO:0002216 GO:0007586 ! capable of part of digestion relationship: RO:0002433 UBERON:0001264 ! contributes to morphology of pancreas property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000018 name: compound eye is_a: UBERON:0015165 ! multi-unit eye intersection_of: UBERON:0000970 ! eye intersection_of: RO:0002473 UBERON:0000971 ! composed primarily of ommatidium relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda relationship: RO:0002473 UBERON:0000971 ! composed primarily of ommatidium property_value: seeAlso "https://github.com/obophenotype/uberon/issues/457" xsd:anyURI [Term] id: UBERON:0000019 name: camera-type eye is_a: UBERON:0000047 ! simple eye is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 UBERON:0004088 ! part of orbital region relationship: BFO:0000051 UBERON:0000965 ! has part lens of camera-type eye relationship: BFO:0000051 UBERON:0000966 ! has part retina relationship: BSPO:0000126 UBERON:0000033 ! head relationship: RO:0002202 UBERON:0003072 ! develops from optic cup relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage [Term] id: UBERON:0000020 name: sense organ is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: RO:0002215 GO:0050906 ! capable of detection of stimulus involved in sensory perception relationship: BFO:0000050 UBERON:0001032 ! part of sensory system relationship: RO:0002215 GO:0050906 ! capable of detection of stimulus involved in sensory perception property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI [Term] id: UBERON:0000025 name: tube is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: RO:0000086 PATO:0002299 ! has quality tubular relationship: BFO:0000051 UBERON:0013522 ! has part subdivision of tube relationship: RO:0000086 PATO:0002299 ! has quality tubular property_value: IAO:0000232 "not every anatomical conduit is a tube - for example, a bone foramen is an opening in the bone, and there is no distinct separate tube structure. Tubes may transport large mixed objects (for example, a bolus of food in the digestive tube) or they may transport the secretions of a single gland (for example, gland ducts)" xsd:string property_value: UBPROP:0000007 "tubular" xsd:string [Term] id: UBERON:0000026 name: appendage is_a: UBERON:0000475 ! organism subdivision relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: UBPROP:0000007 "appendicular" xsd:string property_value: UBPROP:0000008 "this is currently a subtype of organism subdivision - which would exclude feathers" xsd:string [Term] id: UBERON:0000030 name: lamina propria is_a: UBERON:0004923 ! organ component layer relationship: BFO:0000050 UBERON:0000344 ! part of mucosa relationship: BSPO:0001107 UBERON:0000483 ! epithelium relationship: RO:0002473 UBERON:0011825 ! composed primarily of loose connective tissue property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/f/fb/GI_Organization.svg" xsd:anyURI [Term] id: UBERON:0000031 name: lamina propria of trachea is_a: UBERON:0004779 ! respiratory system lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0001005 ! part of respiratory airway relationship: BFO:0000050 UBERON:0000379 ! part of tracheal mucosa [Term] id: UBERON:0000033 name: head is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria relationship: RO:0002551 UBERON:0003129 {gci_filler="NCBITaxon:7776", gci_relation="BFO:0000050"} ! has skeleton skull property_value: RO:0002171 UBERON:0000948 [Term] id: UBERON:0000042 name: serous membrane is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0000060 ! part of anatomical wall relationship: BFO:0000051 UBERON:0001136 ! has part mesothelium relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png" xsd:anyURI [Term] id: UBERON:0000043 name: tendon is_a: UBERON:0007846 ! dense regular connective tissue relationship: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002176 UBERON:0001474 ! connects bone element relationship: RO:0002176 UBERON:0001630 ! connects muscle organ property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg" xsd:anyURI [Term] id: UBERON:0000045 name: ganglion is_a: UBERON:0000061 ! anatomical structure relationship: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: RO:0002202 UBERON:0003869 ! develops from presumptive ganglion relationship: RO:0002473 UBERON:0003714 ! composed primarily of neural tissue relationship: RO:0002495 UBERON:0003869 ! immediate transformation of presumptive ganglion property_value: IAO:0000116 "TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system." xsd:string property_value: UBPROP:0000007 "ganglionic" xsd:string [Term] id: UBERON:0000047 name: simple eye is_a: UBERON:0000970 ! eye [Term] id: UBERON:0000055 name: vessel is_a: UBERON:0004111 ! anatomical conduit relationship: channel_for UBERON:0006314 ! bodily fluid property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000056 name: ureter is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0006555 ! excretory tube is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 UBERON:0036295 ! part of renal pelvis/ureter relationship: BSPO:0000126 UBERON:0000468 ! multicellular organism relationship: channel_for UBERON:0001088 ! urine relationship: channels_from UBERON:0001224 ! renal pelvis relationship: channels_into UBERON:0001255 ! urinary bladder relationship: RO:0002202 UBERON:0005081 ! develops from ureter ureteric bud property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "ureteral" xsd:string property_value: UBPROP:0000007 "ureteric" xsd:string property_value: UBPROP:0000010 "in humans, consists of adventitial, muscular and mucoa layers" xsd:string [Term] id: UBERON:0000057 name: urethra is_a: UBERON:0000062 ! organ is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: BFO:0000050 UBERON:0001556 ! part of lower urinary tract relationship: channel_for UBERON:0001088 ! urine relationship: channels_from UBERON:0001255 ! urinary bladder relationship: RO:0002150 UBERON:0001255 ! continuous with urinary bladder relationship: RO:0002202 UBERON:0000164 ! develops from primitive urogenital sinus relationship: RO:0002202 UBERON:0013241 ! develops from embryonic urethral groove relationship: RO:0002216 GO:0060073 ! capable of part of micturition property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI property_value: UBPROP:0000007 "urethral" xsd:string property_value: UBPROP:0000008 "In human males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening." xsd:string [Term] id: UBERON:0000058 name: duct is_a: UBERON:0000063 ! organ subunit relationship: BFO:0000051 UBERON:0034969 ! has part epithelial layer of duct relationship: RO:0000086 PATO:0002299 ! has quality tubular relationship: RO:0002570 UBERON:0000463 ! conduit for organism substance property_value: UBPROP:0000012 "Most ducts, but not all, are exocrine gland ducts. Some ontologies classify structures such as the oviduct here." xsd:string [Term] id: UBERON:0000059 name: large intestine is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0013765 ! digestive system element relationship: BFO:0000050 UBERON:0000160 ! part of intestine relationship: BFO:0000050 UBERON:0004907 ! part of lower digestive tract relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002433 UBERON:0000160 ! contributes to morphology of intestine property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000060 name: anatomical wall is_a: UBERON:0000064 ! organ part relationship: BFO:0000051 UBERON:0004923 ! has part organ component layer relationship: RO:0002220 UBERON:0002553 ! adjacent to anatomical cavity [Term] id: UBERON:0000061 name: anatomical structure is_a: UBERON:0000465 ! material anatomical entity relationship: RO:0002496 UBERON:0000106 {gci_filler="NCBITaxon:33208", gci_relation="RO:0002162"} ! existence starts during or after zygote stage relationship: RO:0002497 UBERON:0000071 ! existence ends during or before death stage property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000062 name: organ is_a: UBERON:0010000 ! multicellular anatomical structure disjoint_from: UBERON:0034921 ! multi organ part structure relationship: BFO:0000050 UBERON:0000467 ! part of anatomical system relationship: RO:0002002 UBERON:0006984 ! has 2D boundary anatomical surface relationship: RO:0002215 GO:0008150 ! capable of biological_process relationship: RO:0002496 UBERON:0000111 {gci_filler="NCBITaxon:6072", gci_relation="RO:0002162"} ! existence starts during or after organogenesis stage property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 property_value: UBPROP:0000012 "CARO v1 does not include a generic 'organ' class, only simple and compound organ. CARO v2 may include organ, see https://github.com/obophenotype/caro/issues/4" xsd:string [Term] id: UBERON:0000063 name: organ subunit is_a: UBERON:0000064 ! organ part property_value: IAO:0000116 "FMA distinguishes segment from zone by whether the fiat boundaries are fixed/anchored (segments) or floating (zone). It's not completely clear how to apply this distinction" xsd:string [Term] id: UBERON:0000064 name: organ part is_a: UBERON:0010000 ! multicellular anatomical structure relationship: BFO:0000050 UBERON:0000062 ! part of organ property_value: IAO:0000232 "currently defined in a very broad sense, may be replaced by more specific classes in the future" xsd:string property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000065 name: respiratory tract is_a: UBERON:0001005 ! respiratory airway is_a: UBERON:0004119 ! endoderm-derived structure relationship: RO:0002202 UBERON:0007026 ! develops from presumptive gut relationship: RO:0002202 UBERON:0008947 ! develops from respiratory primordium property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000066 name: fully formed stage is_a: UBERON:0000105 ! life cycle stage relationship: BFO:0000050 UBERON:0000092 ! part of post-embryonic stage relationship: BFO:0000062 UBERON:0000111 ! preceded by organogenesis stage relationship: BFO:0000062 UBERON:0004729 {gci_relation="BFO:0000050", gci_filler="NCBITaxon:6239"} ! preceded by nematode larval stage relationship: BFO:0000063 UBERON:0000071 ! precedes death stage property_value: seeAlso "https://github.com/obophenotype/uberon/issues/566" xsd:anyURI [Term] id: UBERON:0000068 name: embryo stage is_a: UBERON:0000105 ! life cycle stage disjoint_from: UBERON:0000092 ! post-embryonic stage relationship: BFO:0000063 UBERON:0000066 ! precedes fully formed stage relationship: BFO:0000063 UBERON:0000092 ! precedes post-embryonic stage relationship: RO:0002082 GO:0009790 ! simultaneous with embryo development [Term] id: UBERON:0000069 name: larval stage is_a: UBERON:0000105 ! life cycle stage relationship: BFO:0000050 UBERON:0000092 ! part of post-embryonic stage relationship: RO:0002082 GO:0002164 ! simultaneous with larval development relationship: RO:0002087 UBERON:0000068 ! immediately preceded by embryo stage property_value: IAO:0000232 "Uberon includes clade-specific subclasses, e.g. nematod larva" xsd:string property_value: RO:0002161 NCBITaxon:32524 [Term] id: UBERON:0000071 name: death stage is_a: UBERON:0000105 ! life cycle stage relationship: RO:0002229 UBERON:0000104 ! ends life cycle property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000072 name: proximo-distal subdivision of respiratory tract is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: BFO:0000050 UBERON:0000065 ! part of respiratory tract relationship: BFO:0000050 UBERON:0000065 ! part of respiratory tract [Term] id: UBERON:0000073 name: regional part of nervous system is_a: UBERON:0000481 ! multi-tissue structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0000075 name: subdivision of skeletal system is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002473 UBERON:0004765 ! composed primarily of skeletal element [Term] id: UBERON:0000076 name: external ectoderm is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1d/Ectoderm.png" xsd:anyURI property_value: IAO:0000116 "merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube)" xsd:string property_value: RO:0002171 UBERON:0002346 property_value: UBPROP:0000011 "(or external ectoderm) forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis" xsd:string [Term] id: UBERON:0000077 name: mixed endoderm/mesoderm-derived structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm intersection_of: RO:0002202 UBERON:0000926 ! develops from mesoderm property_value: IAO:0000232 "Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple" xsd:string [Term] id: UBERON:0000078 name: mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0002202 UBERON:0000924 ! develops from ectoderm intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm intersection_of: RO:0002202 UBERON:0000926 ! develops from mesoderm property_value: IAO:0000232 "Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple" xsd:string [Term] id: UBERON:0000080 name: mesonephros is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure relationship: RO:0002202 UBERON:0002120 ! develops from pronephros property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray986.png" xsd:anyURI property_value: UBPROP:0000007 "mesonephric" xsd:string property_value: UBPROP:0000008 "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In fish and amphibians, the mesonephros will form the mature kidney" xsd:string property_value: UBPROP:0000009 "By contrast to the pronephros, the histological features of the mammalian mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP, modified]" xsd:string [Term] id: UBERON:0000081 name: metanephros is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure relationship: RO:0002202 UBERON:0003220 ! develops from metanephric mesenchyme relationship: RO:0002202 UBERON:0005080 ! develops from metanephric ureteric bud relationship: RO:0002202 UBERON:0005753 ! develops from caudal part of nephrogenic cord relationship: RO:0002285 UBERON:0000080 ! developmentally replaces mesonephros relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: IAO:0000116 "TODO check developmental relationships" xsd:string property_value: UBPROP:0000007 "metanephric" xsd:string property_value: UBPROP:0000011 "During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis" xsd:string [Term] id: UBERON:0000083 name: mesonephric tubule is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005103 ! mesonephric epithelium is_a: UBERON:0006555 ! excretory tube intersection_of: UBERON:0003914 ! epithelial tube intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros property_value: IAO:0000116 "TODO check" xsd:string [Term] id: UBERON:0000084 name: ureteric bud is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0034969 ! epithelial layer of duct relationship: BFO:0000050 UBERON:0003074 ! part of mesonephric duct relationship: RO:0002202 UBERON:0003074 ! develops from mesonephric duct relationship: RO:0002256 UBERON:0003220 ! developmentally induced by metanephric mesenchyme [Term] id: UBERON:0000085 name: morula is_a: UBERON:0000922 ! embryo relationship: BFO:0000050 UBERON:0004716 ! part of conceptus relationship: RO:0002219 UBERON:0000086 ! surrounded by zona pellucida relationship: RO:0002488 UBERON:0000107 ! existence starts during cleavage stage relationship: RO:0002492 UBERON:0000107 ! existence ends during cleavage stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png" xsd:anyURI [Term] id: UBERON:0000086 name: zona pellucida is_a: UBERON:0005764 ! acellular membrane relationship: BFO:0000050 UBERON:0000992 ! part of ovary relationship: BFO:0000051 CHEBI:17089 ! has part glycoprotein property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000087 name: inner cell mass is_a: UBERON:0002050 ! embryonic structure relationship: RO:0002202 UBERON:0000358 ! develops from blastocyst relationship: RO:0002219 UBERON:0000088 ! surrounded by trophoblast property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg" xsd:anyURI property_value: UBPROP:0000011 "This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred.The ICM lies within the blastocyst cavity and is entirely surrounded by the single layer of cells called trophoblast. [Wikipedia:Inner_cell_mass]" xsd:string [Term] id: UBERON:0000088 name: trophoblast comment: Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg. [Wikipedia:Trophoblast] is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000358 ! part of blastocyst relationship: RO:0002202 UBERON:0004345 ! develops from trophectoderm property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "trophoblastic" xsd:string [Term] id: UBERON:0000091 name: bilaminar disc is_a: UBERON:0002050 ! embryonic structure relationship: RO:0002202 UBERON:0000087 ! develops from inner cell mass property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png" xsd:anyURI [Term] id: UBERON:0000092 name: post-embryonic stage is_a: UBERON:0000105 ! life cycle stage relationship: BFO:0000062 UBERON:0000068 ! preceded by embryo stage relationship: RO:0002082 GO:0009791 ! simultaneous with post-embryonic development property_value: seeAlso "https://github.com/obophenotype/uberon/issues/344" xsd:anyURI property_value: UBPROP:0000008 "In birds, the postnatal stage begins when the beak penetrates the shell (i.e., external pipping) (Brown et al. 1997)" xsd:string [Term] id: UBERON:0000094 name: membrane organ is_a: UBERON:0000062 ! organ relationship: RO:0002473 UBERON:0011823 ! composed primarily of dense connective tissue [Term] id: UBERON:0000095 name: cardiac neural crest is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0002342 ! part of neural crest relationship: RO:0002131 UBERON:0005428 ! overlaps vagal neural crest [Term] id: UBERON:0000102 name: lung vasculature is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0000104 name: life cycle is_a: UBERON:0000000 ! processual entity relationship: BFO:0000051 UBERON:0000105 ! has part life cycle stage relationship: RO:0002224 UBERON:0000106 {gci_filler="NCBITaxon:33208", gci_relation="RO:0002162"} ! starts with zygote stage relationship: RO:0002230 UBERON:0000071 ! ends with death stage property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/532" xsd:anyURI [Term] id: UBERON:0000105 name: life cycle stage is_a: UBERON:0000000 ! processual entity relationship: BFO:0000050 UBERON:0000104 ! part of life cycle property_value: IAO:0000116 "this class represents a proper part of the life cycle of an organism. The class 'life cycle' should not be placed here" xsd:string property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 property_value: UBPROP:0000012 "the WBls class 'all stages' belongs here as it is the superclass of other WBls stages" xsd:string property_value: UBPROP:0000012 "we map the ZFS unknown stage here as it is logically equivalent to saying *some* life cycle stage" xsd:string [Term] id: UBERON:0000106 name: zygote stage is_a: UBERON:0000105 ! life cycle stage relationship: BFO:0000050 UBERON:0000068 ! part of embryo stage relationship: RO:0002223 UBERON:0000104 ! starts life cycle property_value: seeAlso EMAPA:16033 [Term] id: UBERON:0000107 name: cleavage stage is_a: UBERON:0000105 ! life cycle stage intersection_of: UBERON:0000105 ! life cycle stage intersection_of: RO:0002082 GO:0040016 ! simultaneous with embryonic cleavage relationship: BFO:0000050 UBERON:0000068 ! part of embryo stage relationship: RO:0002082 GO:0040016 ! simultaneous with embryonic cleavage relationship: RO:0002087 UBERON:0000106 ! immediately preceded by zygote stage [Term] id: UBERON:0000108 name: blastula stage is_a: UBERON:0000105 ! life cycle stage relationship: BFO:0000050 UBERON:0000068 ! part of embryo stage relationship: BFO:0000062 UBERON:0000107 ! preceded by cleavage stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png" xsd:anyURI property_value: IAO:0000116 "consider adding a preceding stage 'morula stage' as part of cleavage" xsd:string [Term] id: UBERON:0000109 name: gastrula stage is_a: UBERON:0000105 ! life cycle stage relationship: BFO:0000050 UBERON:0000068 ! part of embryo stage relationship: BFO:0000062 UBERON:0000108 ! preceded by blastula stage relationship: RO:0002082 GO:0007369 ! simultaneous with gastrulation relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: UBERON:0000110 name: neurula stage is_a: UBERON:0000105 ! life cycle stage relationship: BFO:0000050 UBERON:0000068 ! part of embryo stage relationship: BFO:0000062 UBERON:0000109 ! preceded by gastrula stage relationship: RO:0002082 GO:0001841 ! simultaneous with neural tube formation relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: seeAlso "https://github.com/obophenotype/uberon/issues/343" xsd:anyURI [Term] id: UBERON:0000111 name: organogenesis stage is_a: UBERON:0000105 ! life cycle stage relationship: BFO:0000050 UBERON:0000068 ! part of embryo stage relationship: BFO:0000062 UBERON:0000110 ! preceded by neurula stage relationship: RO:0002082 GO:0048513 ! simultaneous with animal organ development relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: seeAlso "https://github.com/obophenotype/uberon/issues/533" xsd:anyURI [Term] id: UBERON:0000114 name: lung connective tissue is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003580 ! lower respiratory tract connective tissue is_a: UBERON:0003837 ! thoracic segment connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung relationship: RO:0002202 UBERON:0004883 ! develops from lung mesenchyme relationship: RO:0002433 UBERON:0002048 ! contributes to morphology of lung relationship: RO:0002494 UBERON:0004883 ! transformation of lung mesenchyme property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000009 "it functions in the mechanical behavior of the lung, and forms a barrier to regulate the flow of plasma constituents from the capillaries to the airway and alveolar spaces" xsd:string [Term] id: UBERON:0000115 name: lung epithelium is_a: UBERON:0004815 ! lower respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung relationship: RO:0002202 UBERON:0001041 ! develops from foregut relationship: RO:0002433 UBERON:0002048 ! contributes to morphology of lung property_value: UBPROP:0000008 "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string [Term] id: UBERON:0000117 name: respiratory tube is_a: UBERON:0000025 ! tube is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000025 ! tube intersection_of: BFO:0000050 UBERON:0000065 ! part of respiratory tract relationship: BFO:0000050 UBERON:0000065 ! part of respiratory tract relationship: BFO:0000051 UBERON:0000483 ! has part epithelium [Term] id: UBERON:0000118 name: lung bud is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0005911 ! endo-epithelium relationship: RO:0002202 UBERON:0005597 ! develops from lung primordium relationship: RO:0002202 UBERON:0008947 ! develops from respiratory primordium relationship: RO:0002220 UBERON:0004872 ! adjacent to splanchnic layer of lateral plate mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/71/Gray948.png" xsd:anyURI property_value: IAO:0000116 "clarify successors - include bronchi?" xsd:string [Term] id: UBERON:0000122 name: neuron projection bundle is_a: UBERON:0005162 ! multi cell part structure relationship: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: BFO:0000051 GO:0043005 ! has part neuron projection [Term] id: UBERON:0000125 name: neural nucleus is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002473 UBERON:0002020 ! composed primarily of gray matter property_value: UBPROP:0000012 "Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in 'subcortical' because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in 'relatively compact' and 'distiguishable by histology' because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate." xsd:string [Term] id: UBERON:0000126 name: cranial nerve nucleus is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: extends_fibers_into UBERON:0001785 ! cranial nerve relationship: BFO:0000050 RO:0002577 ! part of system relationship: extends_fibers_into UBERON:0001785 ! cranial nerve property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI [Term] id: UBERON:0000153 name: anterior region of body is_a: UBERON:0000475 ! organism subdivision relationship: BSPO:0000096 UBERON:0000154 ! posterior region of body relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria [Term] id: UBERON:0000154 name: posterior region of body is_a: UBERON:0000475 ! organism subdivision relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria [Term] id: UBERON:0000158 name: membranous layer is_a: UBERON:0004923 ! organ component layer relationship: RO:0002007 UBERON:0000064 ! bounding layer of organ part [Term] id: UBERON:0000159 name: anal canal is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0001353 ! part of anal region relationship: channel_for UBERON:0001988 ! feces relationship: RO:0002150 UBERON:0001052 ! continuous with rectum relationship: RO:0002150 UBERON:0001245 ! continuous with anus relationship: RO:0002202 UBERON:0011272 ! develops from embryonic skin basal layer property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png" xsd:anyURI property_value: IAO:0000116 "requires alignment with EHDAA2 and complete developmental relationships" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000160 name: intestine is_a: UBERON:0004921 ! subdivision of digestive tract relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: RO:0002433 UBERON:0001007 ! contributes to morphology of digestive system property_value: IAO:0000116 "This class is probably too inclusive" xsd:string property_value: UBPROP:0000007 "intestinal" xsd:string property_value: UBPROP:0000008 "In zebrafish, No stomach, small intestine, or large intestine can be distinguished. However, differences can be found in the morphology of the mucosa columnar epithelial cells and the number of goblet cells, suggesting functional differentiation. The intestine has numerous folds that become progressively shorter in a rostral-to-caudal direction. Proportionally, these folds are significantly larger than the finger-like intestinal villi of mammals and other amniotes (Wallace et al. 2005). Columnar-shaped absorptive enterocytes are the most numerous in the zebrafish intestinal epithelium. Goblet cells are the second most populous epithelial cell type." xsd:string [Term] id: UBERON:0000161 name: orifice is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000162 name: cloaca is_a: UBERON:0013522 ! subdivision of tube relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BFO:0000050 UBERON:0004122 ! part of genitourinary system relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata property_value: IAO:0000116 "adding df link to embryonic cloaca leads to a cycle in uberon-simple, as cloaca is a suberclass of embryonic cloaca" xsd:string property_value: UBPROP:0000007 "cloacal" xsd:string property_value: UBPROP:0000008 "Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs" xsd:string [Term] id: UBERON:0000163 name: embryonic cloaca is_a: UBERON:0000162 ! cloaca relationship: BFO:0000050 UBERON:0000922 ! part of embryo relationship: BFO:0000050 UBERON:0001008 ! part of renal system relationship: BFO:0000050 UBERON:0012361 ! part of internal anal region relationship: RO:0002254 UBERON:0003064 ! has developmental contribution from intermediate mesoderm property_value: IAO:0000232 "this class represents the embryonic form of the cloaca, as found in both mammals and non-mammals." xsd:string [Term] id: UBERON:0000164 name: primitive urogenital sinus is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000163 ! part of embryonic cloaca relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002202 UBERON:0003064 ! develops from intermediate mesoderm relationship: RO:0002433 UBERON:0000163 ! contributes to morphology of embryonic cloaca property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png" xsd:anyURI [Term] id: UBERON:0000165 name: mouth is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: BSPO:0001106 UBERON:0001555 ! digestive tract relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: BSPO:0001106 UBERON:0001555 ! digestive tract relationship: RO:0002131 UBERON:0001004 ! overlaps respiratory system relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002202 UBERON:0035804 ! develops from future mouth property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/0/06/Mouth_illustration-Otis_Archives.jpg" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/661" xsd:anyURI property_value: UBPROP:0000007 "oral" xsd:string property_value: UBPROP:0000011 "some AOs place this as developing from the stomodeum but we weaken this to developmental contribution, as the mouth includes non-ectodermal derivatives" xsd:string [Term] id: UBERON:0000166 name: oral opening is_a: UBERON:0000161 ! orifice relationship: BFO:0000050 UBERON:0000165 ! part of mouth relationship: RO:0002131 UBERON:0001004 {gci_filler="NCBITaxon:32523", gci_relation="BFO:0000050"} ! overlaps respiratory system [Term] id: UBERON:0000167 name: oral cavity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000165 ! luminal space of mouth relationship: BFO:0000050 UBERON:0000165 ! part of mouth relationship: RO:0002433 UBERON:0000165 ! contributes to morphology of mouth relationship: RO:0002572 UBERON:0000165 ! luminal space of mouth [Term] id: UBERON:0000168 name: proximal-distal subdivision of colon is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: subdivision_of UBERON:0001155 ! colon relationship: BFO:0000050 UBERON:0001155 ! part of colon relationship: subdivision_of UBERON:0001155 ! colon [Term] id: UBERON:0000170 name: pair of lungs is_a: UBERON:0034925 ! anatomical collection intersection_of: UBERON:0034925 ! anatomical collection intersection_of: RO:0002351 UBERON:0002167 ! has member right lung intersection_of: RO:0002351 UBERON:0002168 ! has member left lung relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract relationship: RO:0001025 UBERON:0002224 ! located in thoracic cavity relationship: RO:0002351 UBERON:0002167 ! has member right lung relationship: RO:0002351 UBERON:0002167 {cardinality="1"} ! has member right lung relationship: RO:0002351 UBERON:0002168 ! has member left lung relationship: RO:0002351 UBERON:0002168 {cardinality="1"} ! has member left lung property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000171 name: respiration organ is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: RO:0002215 GO:0007585 ! capable of respiratory gaseous exchange by respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: RO:0002215 GO:0007585 ! capable of respiratory gaseous exchange by respiratory system [Term] id: UBERON:0000174 name: excreta is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0002353 GO:0007588 ! output of excretion relationship: RO:0002353 GO:0007588 ! output of excretion [Term] id: UBERON:0000178 name: blood is_a: UBERON:0000179 ! haemolymphatic fluid relationship: BFO:0000050 UBERON:0002390 ! part of hematopoietic system relationship: BFO:0000051 UBERON:0001969 ! has part blood plasma relationship: RO:0001025 UBERON:0002049 ! located in vasculature relationship: RO:0002202 UBERON:0006596 ! develops from presumptive blood relationship: RO:0002495 UBERON:0006596 ! immediate transformation of presumptive blood property_value: IAO:0000232 "This class excludes blood analogues, such as the insect analog of blood. See UBERON:0000179 haemolymphatic fluid." xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000179 name: haemolymphatic fluid is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0000463 ! organism substance intersection_of: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system relationship: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: UBERON:0000304 name: tendon sheath is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: RO:0002007 UBERON:0000043 ! bounding layer of tendon relationship: BFO:0000050 UBERON:0000043 ! part of tendon relationship: BFO:0000051 UBERON:0011233 ! has part synovial membrane of synovial tendon sheath relationship: BFO:0000051 UBERON:0011234 ! has part fibrous membrane of synovial tendon sheath relationship: RO:0002007 UBERON:0000043 ! bounding layer of tendon property_value: IAO:0000116 "TODO - add layer relations. 'tendon sheath' GAT in FMA." xsd:string [Term] id: UBERON:0000307 name: blastula is_a: UBERON:0000922 ! embryo intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002491 UBERON:0000108 ! existence starts and ends during blastula stage relationship: RO:0002202 UBERON:0007010 ! develops from cleaving embryo relationship: RO:0002491 UBERON:0000108 ! existence starts and ends during blastula stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png" xsd:anyURI property_value: IAO:0000116 "TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula" xsd:string [Term] id: UBERON:0000309 name: body wall is_a: UBERON:0000475 ! organism subdivision property_value: UBPROP:0000008 "defined generically to encompass both vertebrates and invertebrates" xsd:string [Term] id: UBERON:0000317 name: colonic mucosa is_a: UBERON:0001207 ! mucosa of large intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001155 ! part of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000320 name: duodenal mucosa is_a: UBERON:0001204 ! mucosa of small intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0002114 ! part of duodenum property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000325 name: gastric gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003294 ! gland of foregut relationship: BFO:0000050 UBERON:0006924 ! part of stomach glandular epithelium [Term] id: UBERON:0000326 name: pancreatic juice is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: RO:0003001 UBERON:0001264 ! produced by pancreas relationship: RO:0003001 UBERON:0001264 ! produced by pancreas [Term] id: UBERON:0000328 name: gut wall is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract property_value: IAO:0000232 "We model the digestive tract as consisting of two parts: the wall and the lumen." xsd:string [Term] id: UBERON:0000333 name: intestinal gland is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa relationship: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa property_value: UBPROP:0000012 "Note that some sources treat 'intestinal gland' as synonymous with crypts" xsd:string [Term] id: UBERON:0000344 name: mucosa is_a: UBERON:0004923 ! organ component layer relationship: BFO:0000051 UBERON:0000483 ! has part epithelium relationship: BFO:0000051 UBERON:0002384 ! has part connective tissue relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png" xsd:anyURI property_value: RO:0002171 UBERON:0000009 property_value: UBPROP:0000007 "mucosal" xsd:string [Term] id: UBERON:0000348 name: ophthalmic nerve comment: Terminology notes. This nerve is known by a ridiculous number of names[http://palaeos.com/vertebrates/glossary/glossaryPo.html] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region relationship: BFO:0000050 UBERON:0001645 ! part of trigeminal nerve relationship: RO:0002134 UBERON:1000021 ! innervates skin of face relationship: RO:0002202 UBERON:0035597 ! develops from profundal placode relationship: RO:0002380 UBERON:0001645 ! branching part of trigeminal nerve property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000353 name: parenchyma is_a: UBERON:0000064 ! organ part disjoint_from: UBERON:0003891 ! stroma relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002215 GO:0032501 ! capable of multicellular organismal process property_value: UBPROP:0000007 "parenchymal" xsd:string [Term] id: UBERON:0000355 name: pharyngeal mucosa is_a: UBERON:0004785 ! respiratory system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0000358 name: blastocyst is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000307 ! part of blastula relationship: BFO:0000051 UBERON:0000087 ! has part inner cell mass relationship: BFO:0000051 UBERON:0000088 ! has part trophoblast relationship: RO:0002160 NCBITaxon:32525 ! only in taxon Theria relationship: RO:0002202 UBERON:0000085 ! develops from morula relationship: RO:0002491 UBERON:0000108 ! existence starts and ends during blastula stage property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg" xsd:anyURI property_value: IAO:0000116 "Gilbert fig11.32 has blastocyst has giving rise to ICM and trophoblast (which in this source is a synonym for trophectoderm)" xsd:string [Term] id: UBERON:0000375 name: mandibular nerve is_a: UBERON:0011779 ! nerve of head region relationship: BFO:0000050 UBERON:0001645 ! part of trigeminal nerve relationship: RO:0002380 UBERON:0001645 ! branching part of trigeminal nerve property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000377 name: maxillary nerve is_a: UBERON:0011779 ! nerve of head region relationship: BFO:0000050 UBERON:0001645 ! part of trigeminal nerve relationship: RO:0002380 UBERON:0001645 ! branching part of trigeminal nerve property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000378 name: tongue muscle is_a: UBERON:0010959 ! craniocervical muscle is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: RO:0002177 UBERON:0001723 ! attached to part of tongue union_of: UBERON:0001575 ! extrinsic muscle of tongue union_of: UBERON:0001576 ! intrinsic muscle of tongue relationship: BFO:0000050 UBERON:0000165 ! part of mouth relationship: RO:0002177 UBERON:0001723 ! attached to part of tongue relationship: RO:0002202 UBERON:0005594 ! develops from head somite relationship: RO:0002433 UBERON:0001723 ! contributes to morphology of tongue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray1019.png" xsd:anyURI [Term] id: UBERON:0000379 name: tracheal mucosa is_a: UBERON:0004785 ! respiratory system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001005 ! part of respiratory airway relationship: BFO:0000050 UBERON:0001005 ! part of respiratory airway [Term] id: UBERON:0000383 name: musculature of body is_a: UBERON:0011216 ! organ system subdivision intersection_of: UBERON:0011216 ! organ system subdivision intersection_of: RO:0002473 UBERON:0001015 ! composed primarily of musculature relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002215 GO:0003012 ! capable of muscle system process relationship: RO:0002473 UBERON:0001015 ! composed primarily of musculature property_value: IAO:0000116 "consider whether this should be restricted to skeletal musculature. See https://github.com/obophenotype/uberon/issues/77" xsd:string property_value: RO:0002161 NCBITaxon:6040 [Term] id: UBERON:0000389 name: lens cortex is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000479 ! tissue intersection_of: RO:0002221 UBERON:0000390 ! surrounds lens nucleus relationship: BFO:0000050 UBERON:0000965 ! part of lens of camera-type eye relationship: RO:0002202 UBERON:0005614 ! develops from lens anterior epithelium relationship: RO:0002221 UBERON:0000390 ! surrounds lens nucleus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000390 name: lens nucleus is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: RO:0002219 UBERON:0000389 ! surrounded by lens cortex relationship: BFO:0000050 UBERON:0000965 ! part of lens of camera-type eye relationship: RO:0002202 UBERON:0005614 ! develops from lens anterior epithelium relationship: RO:0002219 UBERON:0000389 ! surrounded by lens cortex property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000397 name: colonic epithelium is_a: UBERON:0001278 ! epithelium of large intestine intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001155 ! part of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000409 name: serous gland is_a: UBERON:0002365 ! exocrine gland relationship: BFO:0000051 UBERON:0013232 ! has part serous acinus relationship: RO:0003000 UBERON:0007794 ! produces secretion of serous gland property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png" xsd:anyURI [Term] id: UBERON:0000410 name: bronchial mucosa is_a: UBERON:0000379 ! tracheal mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0000414 name: mucous gland is_a: UBERON:0002365 ! exocrine gland relationship: RO:0002215 GO:0070254 ! capable of mucus secretion relationship: RO:0003000 UBERON:0000912 ! produces mucus property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png" xsd:anyURI [Term] id: UBERON:0000415 name: artery wall is_a: UBERON:0035965 ! wall of blood vessel intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001637 ! part of artery relationship: BFO:0000050 UBERON:0001637 ! part of artery [Term] id: UBERON:0000456 name: secretion of exocrine gland is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0003001 UBERON:0002365 ! produced by exocrine gland relationship: RO:0003001 UBERON:0002365 ! produced by exocrine gland [Term] id: UBERON:0000457 name: cavernous artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001675 ! supplies trigeminal ganglion intersection_of: RO:0002380 UBERON:0001532 ! branching part of internal carotid artery relationship: BFO:0000050 UBERON:0001532 ! part of internal carotid artery relationship: RO:0002178 UBERON:0001675 ! supplies trigeminal ganglion relationship: RO:0002380 UBERON:0001532 ! branching part of internal carotid artery [Term] id: UBERON:0000463 name: organism substance is_a: UBERON:0000465 ! material anatomical entity relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism relationship: RO:0000086 PATO:0002198 ! has quality quality of a substance property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000464 name: anatomical space is_a: UBERON:0000466 ! immaterial anatomical entity relationship: RO:0002219 UBERON:0000061 ! surrounded by anatomical structure property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000465 name: material anatomical entity is_a: BFO:0000040 ! material entity is_a: UBERON:0001062 ! anatomical entity disjoint_from: UBERON:0000466 ! immaterial anatomical entity property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000466 name: immaterial anatomical entity is_a: BFO:0000141 ! immaterial entity is_a: UBERON:0001062 ! anatomical entity property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000467 name: anatomical system is_a: UBERON:0000061 ! anatomical structure relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism relationship: BFO:0000051 UBERON:0000062 ! has part organ relationship: RO:0002496 UBERON:0000111 {gci_filler="NCBITaxon:6072", gci_relation="RO:0002162"} ! existence starts during or after organogenesis stage property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 property_value: seeAlso EHDAA2:0001330 [Term] id: UBERON:0000468 name: multicellular organism is_a: UBERON:0010000 ! multicellular anatomical structure property_value: IAO:0000116 "TODO - split body and mc organism? body continues after death stage" xsd:string property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 property_value: UBPROP:0000007 "organismal" xsd:string [Term] id: UBERON:0000471 name: compound organ component is_a: UBERON:0000481 ! multi-tissue structure relationship: BFO:0000050 UBERON:0003103 ! part of compound organ property_value: IAO:0000232 "this class was introduced for consistency with CARO, however, it has yet to be used in this or other ontologies. It may be retired in the future" xsd:string [Term] id: UBERON:0000474 name: female reproductive system is_a: UBERON:0000990 ! reproductive system intersection_of: UBERON:0000990 ! reproductive system intersection_of: BFO:0000050 UBERON:0003100 ! part of female organism relationship: BFO:0000050 UBERON:0003100 ! part of female organism property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg" xsd:anyURI [Term] id: UBERON:0000475 name: organism subdivision is_a: UBERON:0010000 ! multicellular anatomical structure relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism relationship: BFO:0000051 UBERON:0000075 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! has part subdivision of skeletal system relationship: BFO:0000051 UBERON:0034929 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! has part external soft tissue zone relationship: RO:0002131 UBERON:0001009 {gci_filler="NCBITaxon:33213", gci_relation="RO:0002162"} ! overlaps circulatory system relationship: RO:0002131 UBERON:0001015 {gci_filler="NCBITaxon:6072", gci_relation="RO:0002162"} ! overlaps musculature relationship: RO:0002131 UBERON:0001016 {gci_filler="NCBITaxon:6072", gci_relation="RO:0002162"} ! overlaps nervous system relationship: RO:0002131 UBERON:0001434 {gci_filler="NCBITaxon:33213", gci_relation="RO:0002162"} ! overlaps skeletal system relationship: RO:0002131 UBERON:0002416 {gci_filler="NCBITaxon:6072", gci_relation="RO:0002162"} ! overlaps integumental system property_value: IAO:0000116 "Reflects CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency" xsd:string property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000476 name: acellular anatomical structure is_a: UBERON:0000061 ! anatomical structure property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000477 name: anatomical cluster is_a: UBERON:0034923 ! disconnected anatomical group property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000478 name: extraembryonic structure comment: see also conceptus extraembryonic component in EHDAA2. is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component relationship: RO:0002491 UBERON:0000068 {gci_filler="NCBITaxon:6072", gci_relation="RO:0002162"} ! existence starts and ends during embryo stage [Term] id: UBERON:0000479 name: tissue is_a: UBERON:0010000 ! multicellular anatomical structure relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism relationship: BFO:0000051 GO:0031012 ! has part extracellular matrix property_value: IAO:0000116 "changed label and definition to reflect CARO2" xsd:string property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000481 name: multi-tissue structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: BFO:0000050 NCBITaxon:6072 {gci_filler="NCBITaxon:6072", gci_relation="RO:0002162"} ! part of Eumetazoa relationship: BFO:0000051 UBERON:0000479 ! has part tissue property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0000483 name: epithelium comment: Editor note: surface epithelium may contain non-epithelial cells, such as melanocytes, lymphocytes and dendritic cells, within the sheet of epithelial cells. Do we consider these part of the epithelium, or located-in it? is_a: UBERON:0000479 ! tissue union_of: UBERON:0000486 ! multilaminar epithelium union_of: UBERON:0000490 ! unilaminar epithelium relationship: BFO:0000051 GO:0005911 ! has part cell-cell junction relationship: BFO:0000051 UBERON:0005769 ! has part basement membrane of epithelium relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg" xsd:anyURI property_value: UBPROP:0000007 "epithelial" xsd:string [Term] id: UBERON:0000484 name: simple cuboidal epithelium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010077 ! cuboidal epithelium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray1133.png" xsd:anyURI property_value: IAO:0000116 "needs to be synchronized with CL - there is no distinct cuboidal cell in CL" xsd:string [Term] id: UBERON:0000485 name: simple columnar epithelium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0012274 ! columnar epithelium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray1059.png" xsd:anyURI [Term] id: UBERON:0000486 name: multilaminar epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000487 name: simple squamous epithelium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0006914 ! squamous epithelium property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg" xsd:anyURI [Term] id: UBERON:0000488 name: atypical epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000489 name: cavitated compound organ is_a: UBERON:0003103 ! compound organ intersection_of: UBERON:0003103 ! compound organ intersection_of: BFO:0000051 UBERON:0002553 ! has part anatomical cavity relationship: BFO:0000051 UBERON:0002553 ! has part anatomical cavity property_value: IAO:0000232 "this class was introduced for consistency with CARO, however, it has yet to be used in this or other ontologies. It may be retired in the future" xsd:string [Term] id: UBERON:0000490 name: unilaminar epithelium is_a: UBERON:0000483 ! epithelium property_value: IAO:0000116 "consider adding disjointness axiom between unilaminar and multilaminar - but note that this will render EHDAA2:0003244 (chorionic trophoblast) unsatisfiable" xsd:string [Term] id: UBERON:0000912 name: mucus is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid relationship: BFO:0000051 CHEBI:37395 ! has part mucopolysaccharide relationship: RO:0000086 PATO:0000998 ! has quality viscous relationship: RO:0003001 UBERON:0000344 ! produced by mucosa property_value: UBPROP:0000007 "mucoid" xsd:string property_value: UBPROP:0000007 "mucous" xsd:string [Term] id: UBERON:0000915 name: thoracic segment of trunk is_a: UBERON:0009569 ! subdivision of trunk is_a: UBERON:0011676 ! subdivision of organism along main body axis intersection_of: UBERON:0011676 ! subdivision of organism along main body axis intersection_of: RO:0002551 UBERON:0014477 ! has skeleton thoracic skeleton relationship: RO:0002551 UBERON:0014477 ! has skeleton thoracic skeleton property_value: IAO:0000232 "note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest" xsd:string property_value: RO:0002171 UBERON:0000026 property_value: RO:0002171 UBERON:0000033 property_value: RO:0002171 UBERON:0002417 [Term] id: UBERON:0000916 name: abdomen is_a: UBERON:0009569 ! subdivision of trunk relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata property_value: IAO:0000116 "Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class" xsd:string property_value: UBPROP:0000007 "abdominal" xsd:string property_value: UBPROP:0000007 "celiac" xsd:string [Term] id: UBERON:0000922 name: embryo is_a: UBERON:0000468 ! multicellular organism intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002489 UBERON:0000068 ! existence starts with embryo stage intersection_of: RO:0002493 UBERON:0000068 ! existence ends with embryo stage relationship: RO:0002489 UBERON:0000068 ! existence starts with embryo stage relationship: RO:0002493 UBERON:0000068 ! existence ends with embryo stage property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/2/2d/Wrinkledfrog_embryos.jpg" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/503" xsd:anyURI property_value: UBPROP:0000007 "embryonic" xsd:string [Term] id: UBERON:0000923 name: germ layer comment: Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary = ectoderm, endoderm; secondary=mesoderm; tertiary=dorsal mesoderm, NC[https://github.com/obophenotype/uberon/wiki/The-neural-crest] is_a: UBERON:0010316 ! germ layer / neural crest relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: UBERON:0000924 name: ectoderm is_a: UBERON:0000923 ! germ layer relationship: RO:0002202 UBERON:0006601 ! develops from presumptive ectoderm relationship: RO:0002495 UBERON:0006601 ! immediate transformation of presumptive ectoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray32.png" xsd:anyURI property_value: UBPROP:0000007 "ectodermal" xsd:string [Term] id: UBERON:0000925 name: endoderm is_a: UBERON:0000923 ! germ layer relationship: RO:0002202 UBERON:0006595 ! develops from presumptive endoderm relationship: RO:0002495 UBERON:0006595 ! immediate transformation of presumptive endoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c0/Endoderm2.png" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/df/Gray10.png" xsd:anyURI property_value: UBPROP:0000007 "endodermal" xsd:string [Term] id: UBERON:0000926 name: mesoderm is_a: UBERON:0000923 ! germ layer relationship: RO:0002202 UBERON:0006603 ! develops from presumptive mesoderm relationship: RO:0002495 UBERON:0006603 ! immediate transformation of presumptive mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e8/Mesoderm.png" xsd:anyURI property_value: RO:0002161 NCBITaxon:6040 property_value: UBPROP:0000007 "mesodermal" xsd:string [Term] id: UBERON:0000930 name: stomodeum is_a: UBERON:0013522 ! subdivision of tube relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm relationship: BFO:0000050 UBERON:0035804 ! part of future mouth relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png" xsd:anyURI property_value: IAO:0000116 "consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence" xsd:string property_value: UBPROP:0000007 "stomodeal" xsd:string property_value: UBPROP:0000008 "This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity." xsd:string [Term] id: UBERON:0000931 name: proctodeum is_a: UBERON:0016566 ! pit relationship: BFO:0000050 UBERON:0007026 ! part of presumptive gut relationship: RO:0001025 UBERON:0012469 ! located in external anal region relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002202 UBERON:0000924 ! develops from ectoderm relationship: RO:0002387 UBERON:0001353 ! has potential to develop into anal region property_value: IAO:0000116 "removed WBbt:0006795 'proctodeum' - junction between the alimentary and genital tracts in the male." xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/685" xsd:anyURI property_value: UBPROP:0000007 "proctodeal" xsd:string [Term] id: UBERON:0000945 name: stomach is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0010039 ! food storage organ relationship: BFO:0000050 UBERON:0001041 ! part of foregut relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata relationship: RO:0002215 GO:0001696 ! capable of gastric acid secretion relationship: RO:0002433 UBERON:0001007 ! contributes to morphology of digestive system property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagram.svg" xsd:anyURI [Term] id: UBERON:0000947 name: aorta is_a: UBERON:0003509 ! arterial blood vessel is_a: UBERON:0003519 ! thoracic cavity blood vessel is_a: UBERON:0013768 ! great vessel of heart relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0010191 ! part of aortic system relationship: RO:0002170 UBERON:0002084 ! connected to heart left ventricle property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "aortic" xsd:string property_value: UBPROP:0000008 "All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches" xsd:string [Term] id: UBERON:0000948 name: heart comment: Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" DOI:10.1101/gad.1485706 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0007100 ! primary circulatory organ is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0007100 ! primary circulatory organ intersection_of: BFO:0000051 UBERON:0004151 ! has part cardiac chamber relationship: BFO:0000050 UBERON:0015410 ! part of heart plus pericardium relationship: BFO:0000051 UBERON:0004151 ! has part cardiac chamber relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002202 UBERON:0004141 ! develops from heart tube relationship: RO:0002433 UBERON:0004535 ! contributes to morphology of cardiovascular system property_value: RO:0002161 NCBITaxon:6239 property_value: RO:0002161 NCBITaxon:7227 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "cardiac" xsd:string [Term] id: UBERON:0000949 name: endocrine system is_a: UBERON:0015204 ! glandular system intersection_of: UBERON:0015203 ! non-connected functional system intersection_of: RO:0002215 GO:0050886 ! capable of endocrine process disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002215 GO:0050886 ! capable of endocrine process relationship: RO:0002473 UBERON:0002368 ! composed primarily of endocrine gland relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: UBPROP:0000007 "endocrine" xsd:string [Term] id: UBERON:0000955 name: brain is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: BSPO:0000123 UBERON:0000468 ! multicellular organism relationship: RO:0002202 UBERON:0001049 {gci_filler="NCBITaxon:7711", gci_relation="BFO:0000050"} ! develops from neural tube relationship: RO:0002202 UBERON:0006238 ! develops from future brain relationship: RO:0002215 GO:0050890 {gci_filler="NCBITaxon:9606", gci_relation="BFO:0000050"} ! capable of cognition relationship: RO:0002433 UBERON:0001016 ! contributes to morphology of nervous system relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage relationship: RO:0002495 UBERON:0006238 ! immediate transformation of future brain property_value: IAO:0000116 "requires review for applicability to invertebrate structures, e.g. synganglion" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000957 name: lamina is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue intersection_of: RO:0000086 PATO:0002124 ! has quality laminar relationship: RO:0000086 PATO:0002124 ! has quality laminar property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/80/Laminaarcusvertebrae.png" xsd:anyURI property_value: IAO:0000116 "TODO - merge with cell layer?" xsd:string property_value: UBPROP:0000007 "laminar" xsd:string [Term] id: UBERON:0000963 name: head sensillum is_a: UBERON:0002536 ! arthropod sensillum intersection_of: UBERON:0002536 ! arthropod sensillum intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0000033 ! part of head property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0000964 name: cornea is_a: UBERON:0010000 ! multicellular anatomical structure is_a: UBERON:0010313 ! neural crest-derived structure relationship: BFO:0000050 UBERON:0001801 ! part of anterior segment of eyeball relationship: BFO:0000050 UBERON:0010409 ! part of ocular surface region relationship: BFO:0000050 UBERON:0012430 ! part of tunica fibrosa of eyeball relationship: BFO:0000051 UBERON:0001772 ! has part corneal epithelium relationship: BFO:0000051 UBERON:0004370 ! has part anterior limiting lamina of cornea relationship: RO:0000086 PATO:0000964 ! has quality transparent relationship: RO:0002150 UBERON:0001773 ! continuous with sclera relationship: RO:0002202 UBERON:0004348 ! develops from optic eminence relationship: RO:0002202 UBERON:0005427 ! develops from corneal primordium relationship: RO:0002256 UBERON:0005426 ! developmentally induced by lens vesicle relationship: RO:0002433 UBERON:0001801 ! contributes to morphology of anterior segment of eyeball property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "corneal" xsd:string property_value: UBPROP:0000008 "Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals. In fish, and aquatic vertebrates in general, the cornea plays no role in focusing light, since it has virtually the same refractive index as water" xsd:string [Term] id: UBERON:0000965 name: lens of camera-type eye comment: The lens is avascular and nourished by diffusion from the aqueous and vitreous humors. is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005389 ! transparent eye structure relationship: BFO:0000050 UBERON:0001801 ! part of anterior segment of eyeball relationship: RO:0002202 UBERON:0005426 ! develops from lens vesicle relationship: RO:0002256 UBERON:0003902 ! developmentally induced by retinal neural layer relationship: RO:0002433 UBERON:0001801 ! contributes to morphology of anterior segment of eyeball property_value: RO:0002171 UBERON:0002049 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "This class excludes compound eye corneal lenses." xsd:string [Term] id: UBERON:0000966 name: retina comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005388 ! photoreceptor array relationship: BFO:0000050 UBERON:0001802 ! part of posterior segment of eyeball relationship: BFO:0000050 UBERON:0019207 ! part of chorioretinal region relationship: RO:0002202 UBERON:0003072 ! develops from optic cup property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png" xsd:anyURI property_value: RO:0002161 NCBITaxon:6656 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "retinal" xsd:string [Term] id: UBERON:0000970 name: eye is_a: UBERON:0000020 ! sense organ relationship: BFO:0000050 UBERON:0002104 ! part of visual system relationship: RO:0002215 GO:0009584 ! capable of detection of visible light property_value: IAO:0000232 "This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each)" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "ocular" xsd:string property_value: UBPROP:0000007 "optic" xsd:string property_value: UBPROP:0000010 "Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva," xsd:string [Term] id: UBERON:0000971 name: ommatidium is_a: UBERON:0000970 ! eye is_a: UBERON:0002536 ! arthropod sensillum relationship: BFO:0000050 UBERON:0000018 ! part of compound eye property_value: UBPROP:0000007 "ommatidial" xsd:string [Term] id: UBERON:0000974 name: neck is_a: UBERON:0000475 ! organism subdivision relationship: anteriorly_connected_to UBERON:0000033 ! head relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region relationship: posteriorly_connected_to UBERON:0002100 ! trunk relationship: RO:0002160 NCBITaxon:8287 ! only in taxon Sarcopterygii property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/9/99/Female_neck.jpg" xsd:anyURI property_value: IAO:0000232 "true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck." xsd:string property_value: UBPROP:0000007 "cervical" xsd:string [Term] id: UBERON:0000982 name: skeletal joint is_a: UBERON:0004905 ! articulation union_of: UBERON:0002217 ! synovial joint union_of: UBERON:0011134 ! nonsynovial joint disjoint_from: UBERON:0001474 ! bone element relationship: RO:0002176 UBERON:0004765 ! connects skeletal element relationship: RO:0002433 UBERON:0001434 ! contributes to morphology of skeletal system [Term] id: UBERON:0000988 name: pons is_a: UBERON:0002616 ! regional part of brain relationship: BFO:0000050 UBERON:0001895 ! part of metencephalon relationship: BFO:0000050 UBERON:0002298 ! part of brainstem relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002433 UBERON:0001895 ! contributes to morphology of metencephalon relationship: RO:0002433 UBERON:0002298 ! contributes to morphology of brainstem property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png" xsd:anyURI property_value: IAO:0000116 "The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved" xsd:string property_value: RO:0002174 NCBITaxon:7955 property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0000990 name: reproductive system is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: RO:0002216 GO:0000003 ! capable of part of reproduction disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: BFO:0000051 UBERON:0000991 ! has part gonad relationship: RO:0002216 GO:0000003 ! capable of part of reproduction relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/52/Penis.svg" xsd:anyURI property_value: IAO:0000116 "consider splitting genitalia from reproductive system" xsd:string property_value: UBPROP:0000202 FMA:75572 [Term] id: UBERON:0000991 name: gonad is_a: UBERON:0003133 ! reproductive organ relationship: BFO:0000067 GO:0007276 ! contains process gamete generation relationship: RO:0002202 UBERON:0005564 ! develops from gonad primordium property_value: UBPROP:0000007 "gonadal" xsd:string [Term] id: UBERON:0000992 name: ovary is_a: UBERON:0000991 ! gonad is_a: UBERON:0003134 ! female reproductive organ intersection_of: UBERON:0000991 ! gonad intersection_of: BFO:0000050 UBERON:0000474 ! part of female reproductive system disjoint_from: UBERON:0009117 ! indifferent gonad relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa relationship: RO:0002202 UBERON:0009117 ! develops from indifferent gonad property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png" xsd:anyURI property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "ovarian" xsd:string [Term] id: UBERON:0001003 name: skin epidermis is_a: UBERON:0007376 ! outer epithelium is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:0007376 ! outer epithelium intersection_of: BFO:0000050 UBERON:0002097 ! part of skin of body relationship: BFO:0000050 UBERON:0002097 ! part of skin of body relationship: RO:0002220 UBERON:0002067 ! adjacent to dermis relationship: RO:0002285 UBERON:0003055 ! developmentally replaces periderm property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "epidermal" xsd:string property_value: UBPROP:0000008 "Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. In terrestrial vertebrates the epidermis often forms an outer keratinized or cornified layer, the stratum corneum. Interaction between the epideris and dermis gives rise to feathers (birds), hair and mammary glands (mammals), teeth and scales (placoid: chondrichthyans; cosmoids, ganoid, cycloid in bony fishes)." xsd:string [Term] id: UBERON:0001004 name: respiratory system is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: RO:0002215 GO:0007585 ! capable of respiratory gaseous exchange by respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria relationship: RO:0002215 GO:0003016 ! capable of respiratory system process relationship: RO:0002215 GO:0007585 ! capable of respiratory gaseous exchange by respiratory system relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001005 name: respiratory airway is_a: UBERON:0003103 ! compound organ is_a: UBERON:0004111 ! anatomical conduit relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: channel_for UBERON:0034874 ! air in respiratory system property_value: IAO:0000232 "This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED). As a grouping class this is quite vague, as it is not clear where the airway begins and ends" xsd:string [Term] id: UBERON:0001007 name: digestive system is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: RO:0002215 GO:0022600 ! capable of digestive system process disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: RO:0002215 GO:0022600 ! capable of digestive system process relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: UBPROP:0000007 "digestive" xsd:string [Term] id: UBERON:0001008 name: renal system is_a: UBERON:8450002 ! excretory system intersection_of: UBERON:8450002 ! excretory system intersection_of: RO:0002215 GO:0097254 ! capable of renal tubular secretion relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002215 GO:0097254 ! capable of renal tubular secretion relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: IAO:0000116 "In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here" xsd:string [Term] id: UBERON:0001009 name: circulatory system is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria relationship: RO:0002215 GO:0003013 ! capable of circulatory system process relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg" xsd:anyURI property_value: IAO:0000232 "the cardiovascular system and the lymphatic system are parts of the circulatory system" xsd:string property_value: RO:0002161 NCBITaxon:6073 property_value: RO:0002161 NCBITaxon:6157 [Term] id: UBERON:0001013 name: adipose tissue is_a: UBERON:0011822 ! dense irregular connective tissue disjoint_from: UBERON:0003714 ! neural tissue property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "adipose" xsd:string property_value: UBPROP:0000008 "In humans, adipose tissue is located beneath the skin (subcutaneous fat), around internal organs (visceral fat), in bone marrow (yellow bone marrow) and in breast tissue. Adipose tissue is found in specific locations, which are referred to as adipose depots. Adipose tissue contains several cell types, with the highest percentage of cells being adipocytes, which contain fat droplets. Other cell types include fibroblasts, macrophages, and endothelial cells. Adipose tissue contains many small blood vessels.; Mice have eight major adipose depots, four of which are within the abdominal cavity. The paired gonadal depots are attached to the uterus and ovaries in females and the epididymis and testes in males; the paired retroperitoneal depots are found along the dorsal wall of the abdomen, surrounding the kidney, and, when massive, extend into the pelvis. The mesenteric depot forms a glue-like web that supports the intestines, and the omental depot, which originates near the stomach and spleen, and, when massive, extends into the ventral abdomen." xsd:string [Term] id: UBERON:0001015 name: musculature is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0000383 ! part of musculature of body relationship: RO:0002473 UBERON:0001630 ! composed primarily of muscle organ property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e5/Muscles_anterior_labeled.png" xsd:anyURI property_value: RO:0002171 UBERON:0001474 [Term] id: UBERON:0001016 name: nervous system is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002202 UBERON:0016880 ! develops from future nervous system relationship: RO:0002215 GO:0050877 ! capable of nervous system process relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage relationship: RO:0002495 UBERON:0016880 ! immediate transformation of future nervous system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png" xsd:anyURI property_value: RO:0002161 NCBITaxon:6040 property_value: UBPROP:0000007 "nervous" xsd:string property_value: UBPROP:0000007 "neural" xsd:string [Term] id: UBERON:0001017 name: central nervous system is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria relationship: RO:0002202 UBERON:0016879 ! develops from future central nervous system relationship: RO:0002495 UBERON:0016879 ! immediate transformation of future central nervous system [Term] id: UBERON:0001021 name: nerve is_a: UBERON:0000122 ! neuron projection bundle relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system relationship: RO:0000086 PATO:0002045 ! has quality dendritic property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "nervous" xsd:string [Term] id: UBERON:0001027 name: sensory nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0001032 name: sensory system is_a: UBERON:0015203 ! non-connected functional system relationship: BFO:0000050 UBERON:0004456 ! part of entire sense organ system relationship: RO:0002131 UBERON:0001016 ! overlaps nervous system relationship: RO:0002216 GO:0007600 ! capable of part of sensory perception property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI property_value: UBPROP:0000012 "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string [Term] id: UBERON:0001033 name: gustatory system is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: RO:0002216 GO:0050912 ! capable of part of detection of chemical stimulus involved in sensory perception of taste disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002216 GO:0050912 ! capable of part of detection of chemical stimulus involved in sensory perception of taste relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: UBPROP:0000007 "gustatory" xsd:string [Term] id: UBERON:0001040 name: yolk sac is_a: UBERON:0005292 ! extraembryonic tissue is_a: UBERON:0005631 ! extraembryonic membrane is_a: UBERON:0007499 ! epithelial sac relationship: RO:0002254 UBERON:0000925 ! has developmental contribution from endoderm relationship: RO:0002254 UBERON:0004872 ! has developmental contribution from splanchnic layer of lateral plate mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/17/Gray22.png" xsd:anyURI property_value: IAO:0000116 "consider splitting class" xsd:string property_value: UBPROP:0000008 "In therians, a structure homologous to the yolk sac is is present, but contains no yolk platelets. Instead it is filled with fluid [ISBN:0073040584 (Vertebrates, Kardong)]" xsd:string [Term] id: UBERON:0001041 name: foregut is_a: UBERON:0004921 ! subdivision of digestive tract property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray27.png" xsd:anyURI property_value: IAO:0000116 "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future. In vertebrates the term may refer to a developmental structure" xsd:string [Term] id: UBERON:0001042 name: chordate pharynx comment: Consider generalizing to deuterostome pharynx is_a: UBERON:0006562 ! pharynx relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: distally_connected_to UBERON:0001043 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! esophagus relationship: RO:0002150 UBERON:0001043 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! continuous with esophagus relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002202 UBERON:0009145 ! develops from pharyngeal region of foregut relationship: RO:0002551 UBERON:0008895 {gci_filler="NCBITaxon:89593", gci_relation="BFO:0000050"} ! has skeleton splanchnocranium [Term] id: UBERON:0001043 name: esophagus is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0013765 ! digestive system element relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0004908 ! part of upper digestive tract relationship: proximally_connected_to UBERON:0001042 ! chordate pharynx relationship: RO:0002202 UBERON:0001041 ! develops from foregut property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg" xsd:anyURI property_value: UBPROP:0000007 "esophageal" xsd:string [Term] id: UBERON:0001045 name: midgut is_a: UBERON:0004921 ! subdivision of digestive tract relationship: BFO:0000050 RO:0002577 ! part of system relationship: proximally_connected_to UBERON:0001041 ! foregut property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg" xsd:anyURI property_value: IAO:0000116 "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future. We may explicitly make this a developmental class" xsd:string [Term] id: UBERON:0001046 name: hindgut is_a: UBERON:0004921 ! subdivision of digestive tract relationship: BFO:0000050 RO:0002577 ! part of system relationship: proximally_connected_to UBERON:0001045 ! midgut relationship: RO:0002202 UBERON:0003104 ! develops from mesenchyme property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray472.png" xsd:anyURI property_value: IAO:0000116 "Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future (vertebrates have some contribution from NC - https://github.com/obophenotype/uberon/wiki/The-neural-crest). We may explicitly make this a developmental class" xsd:string [Term] id: UBERON:0001048 name: primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: BFO:0000050 UBERON:0000468 ! part of multicellular organism [Term] id: UBERON:0001049 name: neural tube is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0016879 ! future central nervous system relationship: RO:0002202 UBERON:0005068 ! develops from neural rod property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI [Term] id: UBERON:0001052 name: rectum is_a: UBERON:0004921 ! subdivision of digestive tract relationship: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract relationship: BFO:0000050 UBERON:0012361 ! part of internal anal region relationship: BSPO:0001108 UBERON:0000059 ! large intestine relationship: RO:0002150 UBERON:0001159 ! continuous with sigmoid colon relationship: RO:0002433 UBERON:0000059 ! contributes to morphology of large intestine property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "rectal" xsd:string property_value: UBPROP:0000008 "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html" xsd:string [Term] id: UBERON:0001062 name: anatomical entity is_a: BFO:0000004 ! independent continuant relationship: BFO:0000050 UBERON:0003942 {gci_relation="RO:0002216", gci_filler="GO:0050975"} ! part of somatosensory system relationship: BFO:0000050 UBERON:0003942 {gci_relation="RO:0002216", gci_filler="GO:0019233"} ! part of somatosensory system property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0001064 name: ventral pancreatic duct is_a: UBERON:0000025 ! tube is_a: UBERON:0007329 ! pancreatic duct relationship: channel_for UBERON:0001970 ! bile relationship: channels_into UBERON:0004913 ! hepatopancreatic ampulla relationship: RO:0002150 UBERON:0001174 ! continuous with common bile duct relationship: RO:0002202 UBERON:0003924 ! develops from ventral pancreatic bud property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png" xsd:anyURI property_value: IAO:0000116 "in EHDAA2 this is an epithelium, in FMA the wall consists of epithelium and connective tissue" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001068 name: skin of back is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum relationship: BFO:0000050 UBERON:0011270 ! part of dorsal trunk property_value: IAO:0000116 "TODO - distinguish between entire skin of region and arbitrary zone of skin on region" xsd:string [Term] id: UBERON:0001070 name: external carotid artery is_a: UBERON:0005396 ! carotid artery segment relationship: BFO:0000050 UBERON:0001530 ! part of common carotid artery plus branches relationship: RO:0002202 UBERON:0001530 ! develops from common carotid artery plus branches relationship: RO:0002380 UBERON:0001530 ! branching part of common carotid artery plus branches property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/13/External_carotid_a.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso "https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722" xsd:anyURI property_value: UBPROP:0000008 "not homologous to the external carotid of zebrafish (Goodrich, 1958) - http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html; check XAO" xsd:string [Term] id: UBERON:0001071 name: superficial cervical artery comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP] is_a: UBERON:0012320 ! cervical artery intersection_of: UBERON:0012320 ! cervical artery intersection_of: BFO:0000050 UBERON:0035549 ! part of vasculature of integument relationship: BFO:0000050 UBERON:0035549 ! part of vasculature of integument relationship: RO:0002170 UBERON:0012324 ! connected to transverse cervical artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001072 name: posterior vena cava is_a: UBERON:0004087 ! vena cava intersection_of: UBERON:0004087 ! vena cava intersection_of: RO:0002179 UBERON:0000154 ! drains posterior region of body relationship: BFO:0000050 RO:0002577 ! part of system relationship: channels_into UBERON:0002078 {gci_filler="NCBITaxon:40674", gci_relation="BFO:0000050"} ! right cardiac atrium relationship: RO:0002170 UBERON:0002078 ! connected to right cardiac atrium relationship: RO:0002179 UBERON:0000154 ! drains posterior region of body property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001073 name: ileocecal junction is_a: UBERON:8410024 ! intestinal junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0000059 ! connects large intestine intersection_of: RO:0002176 UBERON:0002108 ! connects small intestine relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002176 UBERON:0000059 ! connects large intestine relationship: RO:0002176 UBERON:0002108 ! connects small intestine [Term] id: UBERON:0001074 name: pericardial cavity is_a: UBERON:0002323 ! coelemic cavity lumen is_a: UBERON:0035809 ! serous cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0002406 ! luminal space of pericardial sac relationship: BFO:0000050 UBERON:0002406 ! part of pericardial sac relationship: RO:0001019 UBERON:0002409 ! contains pericardial fluid relationship: RO:0002202 UBERON:0003887 ! develops from intraembryonic coelom relationship: RO:0002219 UBERON:0002357 ! surrounded by serous pericardium relationship: RO:0002572 UBERON:0002406 ! luminal space of pericardial sac [Term] id: UBERON:0001081 name: endocardium of ventricle is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0002165 ! endocardium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0002165 ! endocardium intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle relationship: BFO:0000050 UBERON:0004784 ! part of heart ventricle wall relationship: RO:0002433 UBERON:0002082 ! contributes to morphology of cardiac ventricle [Term] id: UBERON:0001082 name: epicardium of ventricle is_a: UBERON:0002348 ! epicardium intersection_of: UBERON:0002348 ! epicardium intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle relationship: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle [Term] id: UBERON:0001083 name: myocardium of ventricle is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle relationship: BFO:0000050 UBERON:0004784 ! part of heart ventricle wall relationship: RO:0002433 UBERON:0002082 ! contributes to morphology of cardiac ventricle [Term] id: UBERON:0001084 name: skin of head is_a: UBERON:0012180 ! head or neck skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0000033 ! part of head property_value: IAO:0000116 "TODO - distinguish between entire skin of region and arbitrary zone of skin on region" xsd:string [Term] id: UBERON:0001085 name: skin of trunk is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk property_value: IAO:0000116 "TODO - distinguish between entire skin of region and arbitrary zone of skin on region" xsd:string [Term] id: UBERON:0001088 name: urine is_a: UBERON:0000174 ! excreta intersection_of: UBERON:0000174 ! excreta intersection_of: RO:0003001 UBERON:0002113 ! produced by kidney relationship: RO:0000086 PATO:0001548 {gci_filler="NCBITaxon:40674", gci_relation="BFO:0000050"} ! has quality quality of a liquid relationship: RO:0003001 UBERON:0002113 ! produced by kidney property_value: UBPROP:0000008 "kidney excreta from some taxa (e.g. in aves) may not be liquid" xsd:string [Term] id: UBERON:0001090 name: synovial fluid is_a: UBERON:0007779 ! transudate is_a: UBERON:0007794 ! secretion of serous gland relationship: BFO:0000051 CHEBI:16336 ! has part hyaluronic acid relationship: RO:0001025 UBERON:0007617 ! located in synovial cavity of joint property_value: UBPROP:0000009 "It provides nutrients and lubrication for articular cartilage" xsd:string property_value: UBPROP:0000010 "The fluid contains hyaluronan secreted by fibroblast-like cells in the synovial membrane, lubricin (proteoglycan 4; PRG4) secreted by the surface chondrocytes of the articular cartilage and interstitial fluid filtered from the blood plasma" xsd:string [Term] id: UBERON:0001096 name: wall of esophagus is_a: UBERON:0000328 ! gut wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0001113 name: lobe of liver is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009912 ! anatomical lobe relationship: BFO:0000050 UBERON:0002107 ! part of liver property_value: IAO:0000116 "some work needs to be done to ensure the child terms of this class have correct isa/partof placement. in MA they are subclasses, in FMA they are parts" xsd:string [Term] id: UBERON:0001114 name: right lobe of liver is_a: UBERON:0001113 ! lobe of liver property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI [Term] id: UBERON:0001115 name: left lobe of liver is_a: UBERON:0001113 ! lobe of liver property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI [Term] id: UBERON:0001133 name: cardiac muscle tissue is_a: UBERON:8600006 ! visceral striated muscle tissue disjoint_from: UBERON:0001134 ! skeletal muscle tissue relationship: BFO:0000050 UBERON:0000948 ! part of heart property_value: IAO:0000116 "check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'. Check ncit" xsd:string [Term] id: UBERON:0001134 name: skeletal muscle tissue is_a: UBERON:0002036 ! striated muscle tissue relationship: BFO:0000050 UBERON:0014892 ! part of skeletal muscle organ relationship: RO:0002202 UBERON:0003082 ! develops from myotome property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/c/c0/Skeletal_muscle.jpg" xsd:anyURI property_value: IAO:0000116 "TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Todo - group FBbt:00005073 - somatic muscle." xsd:string [Term] id: UBERON:0001135 name: smooth muscle tissue is_a: UBERON:0002385 ! muscle tissue disjoint_from: UBERON:0002036 ! striated muscle tissue relationship: BFO:0000051 GO:0071953 ! has part elastic fiber property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/3/3b/Glatte_Muskelzellen.jpg" xsd:anyURI property_value: UBPROP:0000013 "GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells." xsd:string [Term] id: UBERON:0001136 name: mesothelium is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000487 ! simple squamous epithelium intersection_of: BFO:0000050 UBERON:0000042 ! part of serous membrane intersection_of: RO:0002202 UBERON:0000926 ! develops from mesoderm relationship: BFO:0000050 UBERON:0000042 ! part of serous membrane property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg" xsd:anyURI [Term] id: UBERON:0001137 name: dorsum is_a: UBERON:0000475 ! organism subdivision relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/432px-Gray-back.PNG" xsd:anyURI property_value: UBPROP:0000007 "dorsal" xsd:string property_value: UBPROP:0000008 "In humans, called the back, a large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body" xsd:string [Term] id: UBERON:0001138 name: superior mesenteric vein is_a: UBERON:0005617 ! mesenteric vein intersection_of: UBERON:0005617 ! mesenteric vein intersection_of: RO:0002179 UBERON:0002108 ! drains small intestine relationship: BFO:0000050 UBERON:0005806 ! part of portal system relationship: RO:0002170 UBERON:0001639 ! connected to hepatic portal vein relationship: RO:0002179 UBERON:0002108 ! drains small intestine relationship: RO:0002202 UBERON:0005487 ! develops from vitelline vein property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001139 name: common iliac vein is_a: UBERON:0005610 ! iliac vein is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 UBERON:0001072 ! part of posterior vena cava relationship: BSPO:0000126 UBERON:0001072 ! posterior vena cava property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001140 name: renal vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0002113 ! drains kidney relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0002113 ! drains kidney relationship: RO:0002376 UBERON:0001072 ! tributary of posterior vena cava property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001141 name: right renal vein is_a: UBERON:0001140 ! renal vein intersection_of: UBERON:0001140 ! renal vein intersection_of: RO:0002179 UBERON:0004539 ! drains right kidney relationship: RO:0002179 UBERON:0004539 ! drains right kidney property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001142 name: left renal vein is_a: UBERON:0001140 ! renal vein intersection_of: UBERON:0001140 ! renal vein intersection_of: RO:0002179 UBERON:0004538 ! drains left kidney relationship: RO:0002179 UBERON:0004538 ! drains left kidney property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001143 name: hepatic vein is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0015796 ! liver blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0002107 ! drains liver disjoint_from: UBERON:0001639 ! hepatic portal vein relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0006877 ! part of vasculature of liver relationship: RO:0002179 UBERON:0002107 ! drains liver relationship: RO:0002376 UBERON:0001072 ! tributary of posterior vena cava property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png" xsd:anyURI property_value: IAO:0000116 "todo - add developmental relationships for other taxa" xsd:string [Term] id: UBERON:0001145 name: ovarian vein is_a: UBERON:0001638 ! vein is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0000992 ! drains ovary relationship: BFO:0000050 RO:0002577 ! part of system relationship: BSPO:0000126 UBERON:0000468 ! multicellular organism relationship: RO:0002179 UBERON:0000992 ! drains ovary property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/cf/Ovarschaf.jpg" xsd:anyURI [Term] id: UBERON:0001152 name: cystic duct is_a: UBERON:0003703 ! extrahepatic bile duct intersection_of: UBERON:0000058 ! duct intersection_of: RO:0002150 UBERON:0001174 ! continuous with common bile duct intersection_of: RO:0002150 UBERON:0002110 ! continuous with gallbladder disjoint_from: UBERON:0005171 ! hepatic duct relationship: channels_into UBERON:0001174 ! common bile duct relationship: RO:0002150 UBERON:0001174 ! continuous with common bile duct relationship: RO:0002150 UBERON:0002110 ! continuous with gallbladder relationship: RO:0002202 UBERON:0005604 ! develops from extrahepatic part of hepatic duct property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png" xsd:anyURI [Term] id: UBERON:0001155 name: colon is_a: UBERON:0004921 ! subdivision of digestive tract relationship: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002433 UBERON:0000059 ! contributes to morphology of large intestine property_value: IAO:0000116 "TODO - abstract this such that it legitimately covers all vertebrates" xsd:string property_value: UBPROP:0000007 "colonic" xsd:string property_value: UBPROP:0000008 "In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]" xsd:string property_value: UBPROP:0000008 "In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates[ZFIN]" xsd:string property_value: UBPROP:0000009 "it extracts water and salt from solid wastes before they are eliminated from the body[WP]" xsd:string [Term] id: UBERON:0001159 name: sigmoid colon is_a: UBERON:0000168 ! proximal-distal subdivision of colon relationship: RO:0002150 UBERON:0001052 ! continuous with rectum relationship: RO:0002202 UBERON:0001046 ! develops from hindgut property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001161 name: body of stomach is_a: UBERON:0009870 ! zone of stomach property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI property_value: IAO:0000116 "we include this as zone of stomach even though it is not distinguished by gland type" xsd:string [Term] id: UBERON:0001165 name: pyloric antrum is_a: UBERON:0009870 ! zone of stomach relationship: BFO:0000050 UBERON:0001166 ! part of pylorus relationship: RO:0002150 UBERON:0001161 ! continuous with body of stomach relationship: RO:0002433 UBERON:0001166 ! contributes to morphology of pylorus property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI [Term] id: UBERON:0001166 name: pylorus is_a: UBERON:0009870 ! zone of stomach intersection_of: UBERON:0009870 ! zone of stomach intersection_of: BFO:0000051 UBERON:0001165 ! has part pyloric antrum intersection_of: BFO:0000051 UBERON:0008858 ! has part pyloric canal intersection_of: BFO:0000051 UBERON:0008861 ! has part pyloric gastric gland relationship: BFO:0000051 UBERON:0001165 ! has part pyloric antrum relationship: BFO:0000051 UBERON:0008858 ! has part pyloric canal relationship: BFO:0000051 UBERON:0008861 ! has part pyloric gastric gland relationship: RO:0002433 UBERON:0000945 ! contributes to morphology of stomach property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg" xsd:anyURI property_value: IAO:0000116 "We follow Kardong in defining stomach regions by glands" xsd:string property_value: UBPROP:0000007 "pyloric" xsd:string [Term] id: UBERON:0001167 name: wall of stomach is_a: UBERON:0000328 ! gut wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0000945 ! part of stomach relationship: RO:0002433 UBERON:0000945 ! contributes to morphology of stomach [Term] id: UBERON:0001168 name: wall of small intestine is_a: UBERON:0001262 ! wall of intestine intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0002108 ! part of small intestine [Term] id: UBERON:0001169 name: wall of large intestine is_a: UBERON:0001262 ! wall of intestine intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0000059 ! part of large intestine [Term] id: UBERON:0001170 name: mesentery of small intestine is_a: UBERON:0001206 ! serosa of small intestine is_a: UBERON:0004854 ! gastrointestinal system mesentery is_a: UBERON:0007826 ! peritoneal mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine [Term] id: UBERON:0001171 name: portal lobule is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009911 ! lobule relationship: BFO:0000050 UBERON:0001280 ! part of liver parenchyma relationship: RO:0002433 UBERON:0001280 ! contributes to morphology of liver parenchyma [Term] id: UBERON:0001172 name: hepatic acinus is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland relationship: BFO:0000050 UBERON:0001280 ! part of liver parenchyma relationship: RO:0002131 UBERON:0001171 ! overlaps portal lobule relationship: RO:0002131 UBERON:0004647 ! overlaps liver lobule [Term] id: UBERON:0001173 name: biliary tree comment: The path in many species is as follows: Bile canaliculi -> Canals of Hering (intralobar bile duct) -> interlobular bile ducts -> intrahepatic bile ducts -> left and right hepatic ducts merge to form -> common hepatic duct *exits liver* and joins -> cystic duct (from gall bladder) forming -> common bile duct -> joins with pancreatic duct -> forming ampulla of Vater -> enters duodenum [WP] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0002294 ! part of biliary system intersection_of: RO:0002473 UBERON:0002394 ! composed primarily of bile duct relationship: BFO:0000050 UBERON:0002294 ! part of biliary system relationship: BFO:0000051 UBERON:0001246 ! has part interlobular bile duct relationship: BFO:0000051 UBERON:0001282 ! has part intralobular bile duct relationship: BFO:0000051 UBERON:0003703 ! has part extrahepatic bile duct relationship: RO:0002202 UBERON:0004912 ! develops from biliary bud relationship: RO:0002433 UBERON:0002423 ! contributes to morphology of hepatobiliary system relationship: RO:0002473 UBERON:0002394 ! composed primarily of bile duct property_value: RO:0002171 UBERON:0002110 [Term] id: UBERON:0001174 name: common bile duct is_a: UBERON:0003703 ! extrahepatic bile duct relationship: channels_into UBERON:0001064 ! ventral pancreatic duct relationship: RO:0002150 UBERON:0001152 ! continuous with cystic duct relationship: RO:0002150 UBERON:0001175 ! continuous with common hepatic duct property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001175 name: common hepatic duct is_a: UBERON:0003703 ! extrahepatic bile duct relationship: BFO:0000050 UBERON:0005604 ! part of extrahepatic part of hepatic duct relationship: channels_into UBERON:0001174 ! common bile duct relationship: RO:0002150 UBERON:0001176 ! continuous with right hepatic duct relationship: RO:0002150 UBERON:0001177 ! continuous with left hepatic duct relationship: RO:0002202 UBERON:0010081 ! develops from future common hepatic duct relationship: RO:0002495 UBERON:0010081 ! immediate transformation of future common hepatic duct property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg" xsd:anyURI property_value: IAO:0000116 "TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part" xsd:string [Term] id: UBERON:0001176 name: right hepatic duct is_a: UBERON:0003703 ! extrahepatic bile duct intersection_of: UBERON:0003703 ! extrahepatic bile duct intersection_of: RO:0002150 UBERON:0001114 ! continuous with right lobe of liver relationship: BFO:0000050 UBERON:0005171 ! part of hepatic duct relationship: RO:0002150 UBERON:0001114 ! continuous with right lobe of liver [Term] id: UBERON:0001177 name: left hepatic duct is_a: UBERON:0003703 ! extrahepatic bile duct intersection_of: UBERON:0003703 ! extrahepatic bile duct intersection_of: RO:0002150 UBERON:0001115 ! continuous with left lobe of liver relationship: BFO:0000050 UBERON:0005171 ! part of hepatic duct relationship: RO:0002150 UBERON:0001115 ! continuous with left lobe of liver [Term] id: UBERON:0001178 name: visceral peritoneum is_a: UBERON:0022350 ! visceral serous membrane intersection_of: UBERON:0022350 ! visceral serous membrane intersection_of: BFO:0000050 UBERON:0002358 ! part of peritoneum relationship: BFO:0000050 UBERON:0002358 ! part of peritoneum property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png" xsd:anyURI [Term] id: UBERON:0001179 name: peritoneal cavity is_a: UBERON:0035809 ! serous cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002220 UBERON:0001178 ! adjacent to visceral peritoneum intersection_of: RO:0002220 UBERON:0001366 ! adjacent to parietal peritoneum intersection_of: RO:0002572 UBERON:0035820 ! luminal space of peritoneal sac relationship: BFO:0000050 UBERON:0035820 ! part of peritoneal sac relationship: RO:0002202 UBERON:0003887 ! develops from intraembryonic coelom relationship: RO:0002220 UBERON:0001178 ! adjacent to visceral peritoneum relationship: RO:0002220 UBERON:0001366 ! adjacent to parietal peritoneum relationship: RO:0002572 UBERON:0035820 ! luminal space of peritoneal sac [Term] id: UBERON:0001184 name: renal artery is_a: UBERON:0012254 ! abdominal aorta artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0002113 ! supplies kidney relationship: RO:0002178 UBERON:0002113 ! supplies kidney property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI property_value: IAO:0000116 "renal arteries vary widely even in humans. Sub-structures should be checked for taxon variability." xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001185 name: right renal artery comment: The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP] is_a: UBERON:0001184 ! renal artery intersection_of: UBERON:0001184 ! renal artery intersection_of: RO:0002178 UBERON:0004539 ! supplies right kidney relationship: RO:0002178 UBERON:0004539 ! supplies right kidney property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001186 name: left renal artery comment: The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP] is_a: UBERON:0001184 ! renal artery intersection_of: UBERON:0001184 ! renal artery intersection_of: RO:0002178 UBERON:0004538 ! supplies left kidney relationship: RO:0002178 UBERON:0004538 ! supplies left kidney property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001190 name: ovarian artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0000992 ! supplies ovary relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0001516 ! connected to abdominal aorta relationship: RO:0002178 UBERON:0000992 ! supplies ovary property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001193 name: hepatic artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0002107 ! supplies liver relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0002107 ! supplies liver property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4c/Common_and_proper_hepatic_artery.png" xsd:anyURI property_value: IAO:0000232 "currently defined in a generic fashion." xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001194 name: splenic artery is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0002106 ! supplies spleen disjoint_from: UBERON:0001640 ! celiac artery relationship: BFO:0000050 UBERON:0001640 ! part of celiac artery relationship: RO:0002178 UBERON:0002106 ! supplies spleen relationship: RO:0002380 UBERON:0001640 ! branching part of celiac artery property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/268" xsd:anyURI [Term] id: UBERON:0001199 name: mucosa of stomach is_a: UBERON:0004786 ! gastrointestinal system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach relationship: RO:0002215 GO:0001696 ! capable of gastric acid secretion relationship: RO:0002433 UBERON:0001167 ! contributes to morphology of wall of stomach property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/1/1c/Normal_gastric_mucosa_intermed_mag.jpg" xsd:anyURI [Term] id: UBERON:0001200 name: submucosa of stomach is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach relationship: RO:0002433 UBERON:0001167 ! contributes to morphology of wall of stomach [Term] id: UBERON:0001201 name: serosa of stomach is_a: UBERON:0004782 ! gastrointestinal system serosa intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0001167 ! part of wall of stomach relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach relationship: RO:0002433 UBERON:0001167 ! contributes to morphology of wall of stomach property_value: IAO:0000116 "TODO - check serosa/peritoneum" xsd:string [Term] id: UBERON:0001202 name: pyloric sphincter is_a: UBERON:0011185 ! gastrointestinal sphincter intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus relationship: BFO:0000050 UBERON:0001166 ! part of pylorus relationship: RO:0002150 UBERON:0008858 ! continuous with pyloric canal relationship: RO:0002220 UBERON:0002114 ! adjacent to duodenum relationship: RO:0002433 UBERON:0001166 ! contributes to morphology of pylorus property_value: RO:0002161 NCBITaxon:8355 [Term] id: UBERON:0001204 name: mucosa of small intestine is_a: UBERON:0001242 ! intestinal mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine relationship: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa [Term] id: UBERON:0001205 name: submucosa of small intestine is_a: UBERON:0009566 ! intestinal submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine [Term] id: UBERON:0001206 name: serosa of small intestine is_a: UBERON:0001243 ! serosa of intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine relationship: BFO:0000050 UBERON:0001243 ! part of serosa of intestine property_value: UBPROP:0000010 "duodenum, 1st part serosa, 2nd - 4th adventitia" xsd:string [Term] id: UBERON:0001207 name: mucosa of large intestine is_a: UBERON:0001242 ! intestinal mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine relationship: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa [Term] id: UBERON:0001208 name: submucosa of large intestine is_a: UBERON:0009566 ! intestinal submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine [Term] id: UBERON:0001209 name: serosa of large intestine is_a: UBERON:0001243 ! serosa of intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine relationship: BFO:0000050 UBERON:0001243 ! part of serosa of intestine property_value: IAO:0000116 "TODO - check serosa/peritoneum" xsd:string [Term] id: UBERON:0001212 name: duodenal gland is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0011148 ! submucosal gland intersection_of: UBERON:0011148 ! submucosal gland intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: RO:0001025 UBERON:0003332 ! located in submucosa of duodenum relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia property_value: IAO:0000116 "currently defined as equivalent to any submucosal gland in the duodenum." xsd:string [Term] id: UBERON:0001213 name: intestinal villus is_a: UBERON:0004923 ! organ component layer relationship: BFO:0000050 UBERON:0001277 ! part of intestinal epithelium relationship: BFO:0000051 UBERON:0001981 ! has part blood vessel relationship: BFO:0000051 UBERON:0012425 ! has part striated border microvillus layer property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg" xsd:anyURI property_value: IAO:0000116 "in mammals, villi are (largely?) absent from the large intestine, so we treat this as equivalent to small intestinal villus. small/large subdivision may not make sense for all species for which this is present (see ZFA). Note that VHOG quotes ISBN:978-0030223693 as suggesting there are some villi in the large intestine" xsd:string [Term] id: UBERON:0001215 name: inferior mesenteric vein is_a: UBERON:0005617 ! mesenteric vein intersection_of: UBERON:0005617 ! mesenteric vein intersection_of: RO:0002179 UBERON:0000059 ! drains large intestine relationship: RO:0002179 UBERON:0000059 ! drains large intestine relationship: RO:0002376 UBERON:0003713 ! tributary of splenic vein property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001222 name: right ureter is_a: UBERON:0000056 ! ureter intersection_of: UBERON:0000056 ! ureter intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001223 name: left ureter is_a: UBERON:0000056 ! ureter intersection_of: UBERON:0000056 ! ureter intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0001224 name: renal pelvis comment: In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter is_a: UBERON:0000064 ! organ part is_a: UBERON:0004111 ! anatomical conduit disjoint_from: UBERON:0002355 ! pelvic region of trunk relationship: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0036295 ! part of renal pelvis/ureter relationship: channel_for UBERON:0001088 ! urine relationship: channels_from UBERON:0002113 ! kidney relationship: channels_into UBERON:0000056 ! ureter relationship: RO:0002150 UBERON:0000056 ! continuous with ureter relationship: RO:0002433 UBERON:0000056 ! contributes to morphology of ureter property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001225 name: cortex of kidney is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0008987 ! part of renal parenchyma relationship: RO:0002433 UBERON:0002113 ! contributes to morphology of kidney property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000010 "In the adult metanephros, it forms a continuous smooth outer zone with a number of projections that extend down between the pyramids. It contains the renal corpuscles and the renal tubules except for parts of the loop of Henle which descend into the renal medulla. It also contains blood vessels and cortical collecting ducts. The renal cortex is the part of the kidney where ultrafiltration occurs.[WP]" xsd:string [Term] id: UBERON:0001231 name: nephron tubule is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0009773 ! renal tubule relationship: RO:0002202 UBERON:0003918 ! develops from kidney mesenchyme relationship: RO:0002433 UBERON:0001285 ! contributes to morphology of nephron property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001232 name: collecting duct of renal tubule is_a: UBERON:0006555 ! excretory tube relationship: BFO:0000050 UBERON:0001285 ! part of nephron relationship: BFO:0000050 UBERON:0004100 ! part of renal collecting system relationship: RO:0002433 UBERON:0002113 ! contributes to morphology of kidney property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001238 name: lamina propria of small intestine is_a: UBERON:0004780 ! gastrointestinal system lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0001204 ! part of mucosa of small intestine [Term] id: UBERON:0001242 name: intestinal mucosa is_a: UBERON:0004786 ! gastrointestinal system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine [Term] id: UBERON:0001243 name: serosa of intestine is_a: UBERON:0004782 ! gastrointestinal system serosa intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine property_value: IAO:0000116 "TODO - check serosa/peritoneum" xsd:string [Term] id: UBERON:0001245 name: anus is_a: UBERON:0000161 ! orifice is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000161 ! orifice intersection_of: BSPO:0001108 UBERON:0001555 ! digestive tract relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BSPO:0001108 UBERON:0001555 ! digestive tract relationship: RO:0002202 UBERON:0000931 ! develops from proctodeum property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/65/Protovsdeuterostomes.svg" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "anal" xsd:string property_value: UBPROP:0000008 "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html" xsd:string [Term] id: UBERON:0001246 name: interlobular bile duct is_a: UBERON:0003704 ! intrahepatic bile duct relationship: BFO:0000050 UBERON:0001279 ! part of portal triad relationship: RO:0002176 UBERON:0004058 ! connects biliary ductule relationship: RO:0002176 UBERON:0014719 ! connects intralobular duct relationship: RO:0002433 UBERON:0001279 ! contributes to morphology of portal triad [Term] id: UBERON:0001252 name: adventitia of ureter is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000050 UBERON:0009916 ! part of wall of ureter [Term] id: UBERON:0001253 name: lamina propria of ureter is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000050 UBERON:0004980 ! part of mucosa of ureter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001255 name: urinary bladder is_a: UBERON:0002075 ! viscus is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018707 ! bladder organ relationship: BFO:0000050 UBERON:0001556 ! part of lower urinary tract relationship: RO:0002202 UBERON:0000164 ! develops from primitive urogenital sinus property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "vesical" xsd:string property_value: UBPROP:0000008 "The urinary bladder evolved in tetrapods. Birds to not possess a true urinary bladder, although Palaeognathae have an undifferentiated cloacal outpocketing that serves a similar function[https://github.com/obophenotype/uberon/issues/454]" xsd:string [Term] id: UBERON:0001256 name: wall of urinary bladder is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder relationship: BFO:0000050 UBERON:0001255 ! part of urinary bladder property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001259 name: mucosa of urinary bladder is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder relationship: RO:0002433 UBERON:0001255 ! contributes to morphology of urinary bladder property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001260 name: serosa of urinary bladder is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder property_value: IAO:0000116 "TODO - check serosa/peritoneum" xsd:string [Term] id: UBERON:0001261 name: lamina propria of urinary bladder is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder relationship: BFO:0000050 UBERON:0001259 ! part of mucosa of urinary bladder property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000010 "Contains loose to dense connective tissue, variably sized blood vessels that may be close to epithelium, lymphatics, variable adipose tissue" xsd:string [Term] id: UBERON:0001262 name: wall of intestine is_a: UBERON:0000328 ! gut wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine relationship: BFO:0000050 UBERON:0000160 ! part of intestine property_value: IAO:0000116 "we place two MA classes here due to the official ncit2ma mapping to intestinal wall tissue; not clear how bowel and intestine are different" xsd:string [Term] id: UBERON:0001263 name: pancreatic acinus is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013232 ! serous acinus intersection_of: UBERON:0009842 ! glandular acinus intersection_of: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas relationship: BFO:0000050 UBERON:0007324 ! part of pancreatic lobule relationship: RO:0002433 UBERON:0000017 ! contributes to morphology of exocrine pancreas property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001264 name: pancreas is_a: UBERON:0002075 ! viscus relationship: BFO:0000051 UBERON:0000016 ! has part endocrine pancreas relationship: BFO:0000051 UBERON:0000017 {gci_filler="NCBITaxon:89593", gci_relation="BFO:0000050"} ! has part exocrine pancreas relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002254 UBERON:0003923 ! has developmental contribution from dorsal pancreatic bud relationship: RO:0002254 UBERON:0003924 ! has developmental contribution from ventral pancreatic bud property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "pancreatic" xsd:string property_value: UBPROP:0000008 "The zebrafish does not have a discrete pancreas. Exocrine pancreatic tissue can be found scattered along the intestinal tract. The acinar structure of the exocrine pancreas is very similar to that of mammals and comprises cells with a very dark, basophilic cytoplasm" xsd:string [Term] id: UBERON:0001268 name: peritoneal fluid is_a: UBERON:0007779 ! transudate is_a: UBERON:0007794 ! secretion of serous gland is_a: UBERON:0036217 ! coelomic fluid intersection_of: UBERON:0007779 ! transudate intersection_of: RO:0001025 UBERON:0001179 ! located in peritoneal cavity relationship: RO:0001025 UBERON:0001179 ! located in peritoneal cavity [Term] id: UBERON:0001271 name: pelvic girdle region is_a: UBERON:0007823 ! appendage girdle region is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0007823 ! appendage girdle region intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex disjoint_from: UBERON:0007832 ! pelvic girdle skeleton relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex relationship: BSPO:0000126 UBERON:0002355 ! pelvic region of trunk relationship: RO:0002551 UBERON:0007832 ! has skeleton pelvic girdle skeleton property_value: IAO:0000232 "this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). See also comments on obo-anatomy mail list. Note that even though the class includes soft tissue it is more restrictive than 'pelvis' which also includes structures in cavities etc. TODO this needs to be better documented" xsd:string [Term] id: UBERON:0001276 name: epithelium of stomach is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0004808 ! gastrointestinal system epithelium is_a: UBERON:0015833 ! foregut epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0001199 ! part of mucosa of stomach relationship: RO:0002433 UBERON:0001199 ! contributes to morphology of mucosa of stomach [Term] id: UBERON:0001277 name: intestinal epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0004808 ! gastrointestinal system epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine relationship: BFO:0000050 UBERON:0001242 ! part of intestinal mucosa relationship: RO:0002433 UBERON:0000160 ! contributes to morphology of intestine [Term] id: UBERON:0001278 name: epithelium of large intestine is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0001207 ! part of mucosa of large intestine [Term] id: UBERON:0001279 name: portal triad is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: BFO:0000050 UBERON:0001172 ! part of hepatic acinus relationship: BFO:0000051 UBERON:0001193 ! has part hepatic artery relationship: BFO:0000051 UBERON:0002017 ! has part portal vein relationship: BFO:0000051 UBERON:0003704 ! has part intrahepatic bile duct relationship: RO:0002433 UBERON:0001171 ! contributes to morphology of portal lobule property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/6/62/Portal_triad.JPG" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000013 "The misnomer 'portal triad' traditionally has included only the first three structures, and was named before lymphatic vessels were discovered in the structure. It can refer both to the largest branch of each of these vessels running inside the hepatoduodenal ligament, and to the smaller branches of these vessels inside the liver." xsd:string [Term] id: UBERON:0001280 name: liver parenchyma is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: BFO:0000050 UBERON:0002107 ! part of liver relationship: BFO:0000050 UBERON:0002107 ! part of liver relationship: RO:0002202 UBERON:0008835 ! develops from hepatic diverticulum relationship: RO:0002433 UBERON:0002107 ! contributes to morphology of liver [Term] id: UBERON:0001282 name: intralobular bile duct is_a: UBERON:0003704 ! intrahepatic bile duct is_a: UBERON:0014716 ! interlobular duct relationship: BFO:0000050 UBERON:0001172 ! part of hepatic acinus relationship: BFO:0000050 UBERON:0004647 ! part of liver lobule relationship: RO:0002433 UBERON:0004647 ! contributes to morphology of liver lobule property_value: IAO:0000116 "Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct)" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001285 name: nephron is_a: UBERON:0000064 ! organ part relationship: BFO:0000050 UBERON:0007684 ! part of uriniferous tubule relationship: RO:0002202 UBERON:0010532 ! develops from primitive nephron relationship: RO:0002433 UBERON:0002113 ! contributes to morphology of kidney relationship: RO:0002495 UBERON:0010532 ! immediate transformation of primitive nephron property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png" xsd:anyURI property_value: IAO:0000116 "kidney terms require review for cross-vertebrate compatibility and developmental relationships." xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001312 name: superior vesical artery is_a: UBERON:0003468 ! ureteric segment of renal artery is_a: UBERON:0009027 ! vesical artery intersection_of: UBERON:0009027 ! vesical artery intersection_of: RO:0002178 UBERON:0000056 ! supplies ureter property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/0/02/Internal_iliac_branches.PNG" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000011 "The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery (fetal hypogastric artery)[WP]" xsd:string [Term] id: UBERON:0001317 name: internal iliac vein is_a: UBERON:0005610 ! iliac vein relationship: RO:0002170 UBERON:0001139 ! connected to common iliac vein relationship: RO:0002179 UBERON:0005179 ! drains pelvic region element property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001325 name: muscle of pelvis is_a: UBERON:0003833 ! abdominal segment muscle is_a: UBERON:0005179 ! pelvic region element [Term] id: UBERON:0001334 name: female urethra is_a: UBERON:0000057 ! urethra intersection_of: UBERON:0000057 ! urethra intersection_of: BFO:0000050 UBERON:0003100 ! part of female organism relationship: BFO:0000050 UBERON:0003100 ! part of female organism property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI [Term] id: UBERON:0001338 name: urethral gland is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia relationship: RO:0002433 UBERON:0000057 ! contributes to morphology of urethra [Term] id: UBERON:0001353 name: anal region is_a: UBERON:0000475 ! organism subdivision relationship: RO:0002131 UBERON:0006866 ! overlaps terminal part of digestive tract relationship: RO:0002254 UBERON:0000931 ! has developmental contribution from proctodeum property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/507" xsd:anyURI [Term] id: UBERON:0001366 name: parietal peritoneum is_a: UBERON:0022351 ! parietal serous membrane intersection_of: UBERON:0022351 ! parietal serous membrane intersection_of: BFO:0000050 UBERON:0002358 ! part of peritoneum relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0002358 ! part of peritoneum relationship: RO:0002371 UBERON:0003697 ! attached to abdominal wall property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png" xsd:anyURI [Term] id: UBERON:0001415 name: skin of pelvis is_a: UBERON:0003836 ! abdominal segment skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0001416 name: skin of abdomen is_a: UBERON:0003836 ! abdominal segment skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0001417 name: skin of neck is_a: UBERON:0012180 ! head or neck skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0000974 ! part of neck relationship: BFO:0000050 UBERON:0000974 ! part of neck [Term] id: UBERON:0001418 name: skin of thorax is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0001419 name: skin of limb is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0001421 name: pectoral girdle region is_a: UBERON:0007823 ! appendage girdle region is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0007823 ! appendage girdle region intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex disjoint_from: UBERON:0007831 ! pectoral girdle skeleton relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex relationship: BSPO:0000126 UBERON:0000468 ! multicellular organism relationship: RO:0002551 UBERON:0007831 ! has skeleton pectoral girdle skeleton property_value: IAO:0000232 "this class describes the organism subdivision, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831)." xsd:string property_value: RO:0002171 UBERON:0001271 [Term] id: UBERON:0001434 name: skeletal system is_a: UBERON:0011216 ! organ system subdivision intersection_of: UBERON:0011216 ! organ system subdivision intersection_of: BFO:0000051 UBERON:0004288 ! has part skeleton intersection_of: BFO:0000051 UBERON:0004770 ! has part articular system disjoint_from: UBERON:0001474 ! bone element disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system relationship: BFO:0000051 UBERON:0004288 ! has part skeleton relationship: BFO:0000051 UBERON:0004770 ! has part articular system relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: RO:0002171 UBERON:0001016 property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/The-skeletal-system" xsd:anyURI property_value: UBPROP:0000007 "skeletal" xsd:string [Term] id: UBERON:0001440 name: forelimb skeleton is_a: UBERON:0004381 ! skeleton of limb is_a: UBERON:0007272 ! pectoral appendage skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0002102 ! skeleton of forelimb relationship: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0012475 ! part of skeleton of pectoral complex relationship: proximally_connected_to UBERON:0007831 ! pectoral girdle skeleton relationship: RO:0002576 UBERON:0002102 ! skeleton of forelimb property_value: IAO:0000116 "TODO - find a home for: FMA:24139 ! skeleton of upper limb" xsd:string property_value: RO:0002475 UBERON:0001441 [Term] id: UBERON:0001441 name: hindlimb skeleton comment: TOOD - find a home for: FMA:24140 is_a: UBERON:0004381 ! skeleton of limb is_a: UBERON:0007273 ! pelvic appendage skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0002103 ! skeleton of hindlimb relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0012476 ! part of skeleton of pelvic complex relationship: proximally_connected_to UBERON:0007832 ! pelvic girdle skeleton relationship: RO:0002576 UBERON:0002103 ! skeleton of hindlimb [Term] id: UBERON:0001444 name: subdivision of head is_a: UBERON:0000475 ! organism subdivision relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0001456 name: face is_a: UBERON:0001444 ! subdivision of head relationship: BFO:0000051 UBERON:0000018 {gci_filler="NCBITaxon:50557", gci_relation="BFO:0000050"} ! has part compound eye relationship: BFO:0000051 UBERON:0000165 ! has part mouth relationship: BFO:0000051 UBERON:0011156 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! has part facial skeleton relationship: RO:0002433 UBERON:0000033 ! contributes to morphology of head relationship: RO:0002551 UBERON:0011156 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! has skeleton facial skeleton property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/55/Mona_Lisa_headcrop.jpg" xsd:anyURI property_value: UBPROP:0000007 "facial" xsd:string [Term] id: UBERON:0001458 name: skin of lip is_a: UBERON:0001084 ! skin of head intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0001833 ! part of lip relationship: BFO:0000050 UBERON:0001833 ! part of lip [Term] id: UBERON:0001474 name: bone element is_a: UBERON:0004765 ! skeletal element intersection_of: UBERON:0004765 ! skeletal element intersection_of: RO:0002473 UBERON:0002481 ! composed primarily of bone tissue disjoint_from: UBERON:0001630 ! muscle organ disjoint_from: UBERON:0005090 ! muscle structure relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002473 UBERON:0002481 ! composed primarily of bone tissue property_value: RO:0002171 UBERON:0001015 property_value: RO:0002171 UBERON:0001630 property_value: RO:0002171 UBERON:0002385 [Term] id: UBERON:0001484 name: articular capsule is_a: UBERON:0000094 ! membrane organ intersection_of: UBERON:0000094 ! membrane organ intersection_of: BFO:0000051 UBERON:0007616 ! has part layer of synovial tissue intersection_of: RO:0002221 UBERON:0002217 ! surrounds synovial joint relationship: BFO:0000051 UBERON:0007616 ! has part layer of synovial tissue relationship: RO:0002221 UBERON:0002217 ! surrounds synovial joint property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray299.png" xsd:anyURI [Term] id: UBERON:0001496 name: ascending aorta is_a: UBERON:0001515 ! thoracic aorta relationship: BFO:0000050 UBERON:0001515 ! part of thoracic aorta relationship: RO:0002202 UBERON:0005338 ! develops from outflow tract aortic component relationship: RO:0002254 UBERON:0002061 ! has developmental contribution from truncus arteriosus relationship: RO:0002254 UBERON:0005432 ! has developmental contribution from aortic sac relationship: RO:0002433 UBERON:0001515 ! contributes to morphology of thoracic aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001497 name: muscle of pelvic girdle is_a: UBERON:0001325 ! muscle of pelvis is_a: UBERON:0010890 ! pelvic complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region relationship: BFO:0000050 UBERON:0004470 ! part of musculature of pelvic girdle [Term] id: UBERON:0001508 name: arch of aorta is_a: UBERON:0001515 ! thoracic aorta relationship: BFO:0000050 UBERON:0001515 ! part of thoracic aorta relationship: RO:0002170 UBERON:0001496 ! connected to ascending aorta relationship: RO:0002202 UBERON:0003121 ! develops from pharyngeal arch artery 4 relationship: RO:0002254 UBERON:0005432 ! has developmental contribution from aortic sac relationship: RO:0002254 UBERON:0005613 ! has developmental contribution from left dorsal aorta relationship: RO:0002433 UBERON:0001515 ! contributes to morphology of thoracic aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: IAO:0000232 "Do not confuse with aortic arch" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "birds have right aortic arch, mammals left." xsd:string [Term] id: UBERON:0001514 name: descending aorta is_a: UBERON:0005800 ! section of aorta relationship: RO:0002170 UBERON:0001508 ! connected to arch of aorta relationship: RO:0002202 UBERON:0005805 ! develops from dorsal aorta relationship: RO:0002254 UBERON:0005613 ! has developmental contribution from left dorsal aorta relationship: RO:0002254 UBERON:0005622 ! has developmental contribution from right dorsal aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000011 "results from fusion of left and right dorsal aortae" xsd:string [Term] id: UBERON:0001515 name: thoracic aorta is_a: UBERON:0005800 ! section of aorta intersection_of: UBERON:0005800 ! section of aorta intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: RO:0002433 UBERON:0000947 ! contributes to morphology of aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png" xsd:anyURI [Term] id: UBERON:0001516 name: abdominal aorta is_a: UBERON:0005800 ! section of aorta relationship: BFO:0000050 UBERON:0001514 ! part of descending aorta relationship: RO:0002131 UBERON:0000916 ! overlaps abdomen relationship: RO:0002170 UBERON:0002345 ! connected to descending thoracic aorta relationship: RO:0002433 UBERON:0001514 ! contributes to morphology of descending aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png" xsd:anyURI property_value: IAO:0000116 "Many of the branches of the abdominal aorta in mammals may be branches of the dorsal aorta in other vertebrates" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001529 name: brachiocephalic artery is_a: UBERON:0004573 ! systemic artery relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0007204 ! part of brachiocephalic vasculature relationship: channels_from UBERON:0001508 ! arch of aorta relationship: RO:0002170 UBERON:0001508 ! connected to arch of aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001530 name: common carotid artery plus branches is_a: UBERON:0004573 ! systemic artery relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0001508 ! connected to arch of aorta relationship: RO:0002202 UBERON:0004363 ! develops from pharyngeal arch artery relationship: RO:0002488 UBERON:0000068 ! existence starts during embryo stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: IAO:0000116 "we follow the FMA and treat the artery as a tree-structure - here we include the internal and external as parts. For the part that excludes the branches, see 'trunk of common carotid artery'" xsd:string property_value: IAO:0000232 "This class represents the adult and developing structures'" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000011 "in birds and reptiles, develops from arch III and parts of ventral and dorsal aortae" xsd:string [Term] id: UBERON:0001532 name: internal carotid artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005396 ! carotid artery segment relationship: BFO:0000050 UBERON:0001530 ! part of common carotid artery plus branches relationship: RO:0002178 UBERON:0000955 ! supplies brain relationship: RO:0002178 UBERON:0000970 ! supplies eye relationship: RO:0002202 UBERON:2001053 ! develops from future internal carotid artery relationship: RO:0002380 UBERON:0001530 ! branching part of common carotid artery plus branches property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001533 name: subclavian artery is_a: UBERON:0004573 ! systemic artery relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002131 UBERON:0000915 ! overlaps thoracic segment of trunk relationship: RO:0002170 UBERON:0001508 ! connected to arch of aorta relationship: RO:0002178 UBERON:0004710 ! supplies pectoral appendage relationship: RO:0002202 UBERON:0002457 ! develops from intersomitic artery relationship: RO:0002202 UBERON:0005622 ! develops from right dorsal aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: IAO:0000116 "Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO)" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001534 name: right subclavian artery is_a: UBERON:0001533 ! subclavian artery is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001533 ! subclavian artery intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: RO:0002170 UBERON:0001529 ! connected to brachiocephalic artery property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "in humans, arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery" xsd:string property_value: UBPROP:0000011 "proximal part arises from right 4th aortic arch in humans" xsd:string [Term] id: UBERON:0001555 name: digestive tract is_a: UBERON:0000025 ! tube relationship: BFO:0000050 UBERON:0001007 ! part of digestive system relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002176 UBERON:0000165 ! connects mouth relationship: RO:0002202 UBERON:0007026 ! develops from presumptive gut relationship: RO:0002495 UBERON:0007026 ! immediate transformation of presumptive gut property_value: UBPROP:0000013 "we following Kardong in naming the entire tube from mouth to anus the alimentary canal. Kardong calls the portion of this tract that excludes buccal cavity and pharynx the 'alimentary canal', consider adding an extra class for this" xsd:string [Term] id: UBERON:0001556 name: lower urinary tract is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0001008 ! part of renal system relationship: BFO:0000051 UBERON:0000057 ! has part urethra relationship: BFO:0000051 UBERON:0001255 ! has part urinary bladder [Term] id: UBERON:0001558 name: lower respiratory tract is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: BFO:0000051 UBERON:0000170 ! has part pair of lungs property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001568 name: muscle of larynx is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0004478 ! part of musculature of larynx relationship: RO:0002433 UBERON:0001015 ! contributes to morphology of musculature relationship: RO:0002433 UBERON:0001737 ! contributes to morphology of larynx [Term] id: UBERON:0001571 name: genioglossus muscle is_a: UBERON:0001575 ! extrinsic muscle of tongue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: RO:0002202 UBERON:0010059 ! develops from hypoglossal cord relationship: RO:0002372 UBERON:0006606 ! has muscle origin mandibular symphysis relationship: RO:0002373 UBERON:0009471 ! has muscle insertion dorsum of tongue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7e/Genioglossus.png" xsd:anyURI [Term] id: UBERON:0001572 name: hyoglossus muscle is_a: UBERON:0001575 ! extrinsic muscle of tongue intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: RO:0002005 UBERON:0001650 ! innervated_by hypoglossal nerve intersection_of: RO:0002371 UBERON:0001685 ! attached to hyoid bone intersection_of: RO:0002371 UBERON:0001723 ! attached to tongue relationship: RO:0002371 UBERON:0001685 ! attached to hyoid bone relationship: RO:0002371 UBERON:0001723 ! attached to tongue relationship: RO:0002372 UBERON:0001685 ! has muscle origin hyoid bone relationship: RO:0002373 UBERON:0001723 ! has muscle insertion tongue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7e/Hyoglossus.png" xsd:anyURI [Term] id: UBERON:0001575 name: extrinsic muscle of tongue is_a: UBERON:0000378 ! tongue muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: RO:0002005 UBERON:0001650 ! innervated_by hypoglossal nerve intersection_of: RO:0002177 UBERON:0001723 ! attached to part of tongue intersection_of: RO:0002371 UBERON:0004765 ! attached to skeletal element relationship: RO:0002005 UBERON:0001650 ! innervated_by hypoglossal nerve relationship: RO:0002202 UBERON:0011332 ! develops from extrinsic tongue pre-muscle mass relationship: RO:0002371 UBERON:0004765 ! attached to skeletal element relationship: RO:0002495 UBERON:0011332 ! immediate transformation of extrinsic tongue pre-muscle mass [Term] id: UBERON:0001576 name: intrinsic muscle of tongue is_a: UBERON:0000378 ! tongue muscle is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue intersection_of: RO:0002005 UBERON:0001650 ! innervated_by hypoglossal nerve intersection_of: RO:0002177 UBERON:0001723 ! attached to part of tongue relationship: BFO:0000050 UBERON:0001723 ! part of tongue relationship: RO:0002005 UBERON:0001650 ! innervated_by hypoglossal nerve relationship: RO:0002202 UBERON:0010059 ! develops from hypoglossal cord [Term] id: UBERON:0001584 name: left subclavian artery is_a: UBERON:0001533 ! subclavian artery is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001533 ! subclavian artery intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: channels_from UBERON:0001508 ! arch of aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "in humans, branches off the arch of aorta" xsd:string property_value: UBPROP:0000011 "arises from left intersegmental 6th artery in the region of the 6th -7th cervical segment in humans" xsd:string [Term] id: UBERON:0001585 name: anterior vena cava is_a: UBERON:0004087 ! vena cava intersection_of: UBERON:0004087 ! vena cava intersection_of: RO:0002179 UBERON:0000153 ! drains anterior region of body relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0002078 ! connected to right cardiac atrium relationship: RO:0002179 UBERON:0000153 ! drains anterior region of body property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b4/Venenwinkel.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). In the mouse, The right pulmonary vein passes dorsal to the right superior vena cava, the left pulmonary dorsal to the left superior vena cava (Biology of the Laboratory Mouse, Green)." xsd:string [Term] id: UBERON:0001586 name: internal jugular vein is_a: UBERON:0004711 ! jugular vein relationship: RO:0002170 UBERON:0003711 ! connected to brachiocephalic vein relationship: RO:0002179 UBERON:0000955 ! drains brain relationship: RO:0002179 UBERON:0001456 ! drains face property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray562.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001592 name: bronchial vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0002185 ! drains bronchus relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0002185 ! drains bronchus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001605 name: ciliary muscle is_a: UBERON:0003386 ! smooth muscle of eye is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011222 ! intra-ocular muscle relationship: BFO:0000050 UBERON:0001775 ! part of ciliary body property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png" xsd:anyURI [Term] id: UBERON:0001606 name: muscle of iris is_a: UBERON:0011222 ! intra-ocular muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: BFO:0000050 UBERON:0001769 ! part of iris relationship: BFO:0000050 UBERON:0001769 ! part of iris property_value: IAO:0000116 "revisit this, see issue #331" xsd:string property_value: UBPROP:0000008 "in aves, stromal mesenchymal cells may migrate to the iris and become skeletal" xsd:string property_value: UBPROP:0000008 "The muscle cells of the iris are smooth muscle in mammals and amphibians, but are striated muscle in birds and reptiles. Many fish have neither, and, as a result, their irides are unable to dilate and contract, so that the pupil always remains of a fixed size[Romer, via WP]" xsd:string [Term] id: UBERON:0001607 name: sphincter pupillae is_a: UBERON:0001606 ! muscle of iris is_a: UBERON:0004234 ! iris smooth muscle is_a: UBERON:0007521 ! smooth muscle sphincter intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: BFO:0000050 UBERON:0001769 ! part of iris relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002202 UBERON:0002346 ! develops from neurectoderm relationship: RO:0002372 UBERON:0001769 ! has muscle origin iris relationship: RO:0002373 UBERON:0001769 ! has muscle insertion iris relationship: RO:0002568 UBERON:0001608 ! has muscle antagonist dilatator pupillae property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png" xsd:anyURI property_value: UBPROP:0000008 "In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]" xsd:string property_value: UBPROP:0000008 "WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure" xsd:string property_value: UBPROP:0000009 "constricts iris" xsd:string [Term] id: UBERON:0001608 name: dilatator pupillae is_a: UBERON:0004234 ! iris smooth muscle relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002202 UBERON:0002346 ! develops from neurectoderm relationship: RO:0002372 UBERON:0001769 ! has muscle origin iris relationship: RO:0002373 UBERON:0001769 ! has muscle insertion iris relationship: RO:0002568 UBERON:0001607 ! has muscle antagonist sphincter pupillae property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png" xsd:anyURI property_value: UBPROP:0000009 "It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina" xsd:string [Term] id: UBERON:0001610 name: lingual artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035398 ! branch of external carotid artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001723 ! supplies tongue relationship: BFO:0000050 UBERON:0001723 ! part of tongue relationship: BSPO:0000126 UBERON:0001723 ! tongue relationship: RO:0002178 UBERON:0001723 ! supplies tongue property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001612 name: facial artery is_a: UBERON:0035398 ! branch of external carotid artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001456 ! supplies face intersection_of: RO:0002380 UBERON:0001070 ! branching part of external carotid artery relationship: RO:0002178 UBERON:0001456 ! supplies face property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001616 name: maxillary artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002207 UBERON:0003118 ! directly develops from pharyngeal arch artery 1 relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0001070 ! connected to external carotid artery relationship: RO:0002202 UBERON:0003118 ! develops from pharyngeal arch artery 1 relationship: RO:0002207 UBERON:0003118 ! directly develops from pharyngeal arch artery 1 property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/39/Gray510.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001619 name: ophthalmic artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: BFO:0000050 UBERON:0001532 ! part of internal carotid artery relationship: RO:0002380 UBERON:0001532 ! branching part of internal carotid artery property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001622 name: lacrimal artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001817 ! supplies lacrimal gland relationship: BFO:0000050 UBERON:0001619 ! part of ophthalmic artery relationship: RO:0002178 UBERON:0001817 ! supplies lacrimal gland relationship: RO:0002380 UBERON:0001619 ! branching part of ophthalmic artery property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001630 name: muscle organ is_a: UBERON:0000062 ! organ is_a: UBERON:0005090 ! muscle structure intersection_of: UBERON:0000062 ! organ intersection_of: RO:0002473 UBERON:0002385 ! composed primarily of muscle tissue relationship: BFO:0000050 UBERON:0001015 ! part of musculature relationship: RO:0002473 UBERON:0002385 ! composed primarily of muscle tissue property_value: UBPROP:0000007 "muscular" xsd:string [Term] id: UBERON:0001637 name: artery is_a: UBERON:0003509 ! arterial blood vessel relationship: channels_from UBERON:0000948 ! heart property_value: IAO:0000116 "Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme." xsd:string property_value: UBPROP:0000007 "arterial" xsd:string property_value: UBPROP:0000012 "Some arthropods have primitive arterial systems but this term refers to arteries in a true closed circulatory system." xsd:string property_value: UBPROP:0000202 FMA:63812 [Term] id: UBERON:0001638 name: vein is_a: UBERON:0003920 ! venous blood vessel intersection_of: UBERON:0003920 ! venous blood vessel intersection_of: channel_for UBERON:0013756 ! venous blood relationship: channel_for UBERON:0013756 ! venous blood relationship: channels_from UBERON:0001982 ! capillary property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg" xsd:anyURI property_value: IAO:0000116 "TODO - check with MA - vein vs venous blood vessel" xsd:string property_value: UBPROP:0000007 "venous" xsd:string property_value: UBPROP:0000202 FMA:63814 [Term] id: UBERON:0001639 name: hepatic portal vein is_a: UBERON:0002017 ! portal vein relationship: BFO:0000050 UBERON:0010194 ! part of hepatic portal system relationship: channels_into UBERON:0002107 ! liver relationship: RO:0002131 UBERON:0002107 ! overlaps liver property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "In humans A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]" xsd:string [Term] id: UBERON:0001640 name: celiac artery comment: dorsal aorta in Kardong is_a: UBERON:0012254 ! abdominal aorta artery relationship: indirectly_supplies UBERON:0000160 ! intestine relationship: indirectly_supplies UBERON:0000945 ! stomach relationship: indirectly_supplies UBERON:0002106 ! spleen relationship: indirectly_supplies UBERON:0002107 ! liver property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001645 name: trigeminal nerve is_a: UBERON:0001785 ! cranial nerve intersection_of: UBERON:0001785 ! cranial nerve intersection_of: extends_fibers_into UBERON:0002925 ! trigeminal nucleus intersection_of: RO:0002134 UBERON:0000165 ! innervates mouth intersection_of: RO:0002134 UBERON:0011648 ! innervates jaw muscle intersection_of: RO:0002134 UBERON:1000021 ! innervates skin of face relationship: extends_fibers_into UBERON:0002925 ! trigeminal nucleus relationship: RO:0002134 UBERON:0000165 ! innervates mouth relationship: RO:0002134 UBERON:0011648 ! innervates jaw muscle relationship: RO:0002134 UBERON:1000021 ! innervates skin of face relationship: RO:0002254 UBERON:0005239 ! has developmental contribution from basal plate metencephalon property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001649 name: glossopharyngeal nerve is_a: UBERON:0001785 ! cranial nerve relationship: BFO:0000050 UBERON:0001033 ! part of gustatory system relationship: extends_fibers_into UBERON:0001896 ! medulla oblongata relationship: RO:0002134 UBERON:0001727 ! innervates taste bud relationship: RO:0002134 UBERON:0006562 ! innervates pharynx relationship: RO:0002254 UBERON:0005239 ! has developmental contribution from basal plate metencephalon property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001650 name: hypoglossal nerve is_a: UBERON:0001785 ! cranial nerve intersection_of: UBERON:0001785 ! cranial nerve intersection_of: extends_fibers_into UBERON:0002871 ! hypoglossal nucleus intersection_of: RO:0002134 UBERON:0000378 ! innervates tongue muscle relationship: extends_fibers_into UBERON:0002871 ! hypoglossal nucleus relationship: RO:0002134 UBERON:0001571 ! innervates genioglossus muscle relationship: RO:0002134 UBERON:0001572 ! innervates hyoglossus muscle relationship: RO:0002160 NCBITaxon:32523 ! only in taxon Tetrapoda property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray794.png" xsd:anyURI property_value: RO:0002174 NCBITaxon:8292 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "we use a broad definition of this cranial nerve that encompasses the amphibian predecessor of true amniote hypoglossal nerves" xsd:string [Term] id: UBERON:0001651 name: right pulmonary artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0002167 ! supplies right lung relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0002333 ! connected to pulmonary trunk relationship: RO:0002178 UBERON:0002167 ! supplies right lung property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png" xsd:anyURI property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: IAO:0000116 "TODO - add class 'pulmonary artery tree organ'" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001652 name: left pulmonary artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0002168 ! supplies left lung relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0002333 ! connected to pulmonary trunk relationship: RO:0002178 UBERON:0002168 ! supplies left lung property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png" xsd:anyURI property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: IAO:0000116 "TODO - add class 'pulmonary artery tree organ'" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001653 name: facial vein is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0001456 ! part of face relationship: RO:0002376 UBERON:0001586 ! tributary of internal jugular vein property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001675 name: trigeminal ganglion is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 ! sensory ganglion is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: extends_fibers_into UBERON:0001645 ! trigeminal nerve relationship: extends_fibers_into UBERON:0001645 ! trigeminal nerve relationship: RO:0002202 UBERON:0006304 ! develops from future trigeminal ganglion relationship: RO:0002495 UBERON:0006304 ! immediate transformation of future trigeminal ganglion property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png" xsd:anyURI property_value: IAO:0000116 "consider renaming this 'trigeminal ganglion complex'. The complex may be fused (amniotes) partially fused (xenopus) or separate (sharks)" xsd:string [Term] id: UBERON:0001676 name: occipital bone is_a: UBERON:0010428 ! flat bone is_a: UBERON:0011164 ! neurocranium bone relationship: BFO:0000050 UBERON:0005902 ! part of occipital region relationship: RO:0002131 UBERON:0002241 ! overlaps chondrocranium relationship: RO:0002131 UBERON:0003113 ! overlaps dermatocranium relationship: RO:0002160 NCBITaxon:117570 ! only in taxon Teleostomi relationship: RO:0002202 UBERON:0003089 ! develops from sclerotome relationship: RO:0002221 UBERON:0003687 ! surrounds foramen magnum property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png" xsd:anyURI [Term] id: UBERON:0001678 name: temporal bone is_a: UBERON:0008193 ! pneumatized bone relationship: RO:0002131 UBERON:0002241 ! overlaps chondrocranium relationship: RO:0002131 UBERON:0003113 ! overlaps dermatocranium relationship: RO:0002131 UBERON:0008895 ! overlaps splanchnocranium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg" xsd:anyURI property_value: UBPROP:0000008 "In many mammals, as in humans, the petrosal, ectotympanic and squamosal bones synostose to form the temporal bone + styloid process" xsd:string [Term] id: UBERON:0001685 name: hyoid bone is_a: UBERON:0008001 ! irregular bone relationship: BFO:0000050 UBERON:0010272 ! part of hyoid apparatus relationship: RO:0002254 UBERON:0003066 ! has developmental contribution from pharyngeal arch 2 relationship: RO:0002254 UBERON:0003114 ! has developmental contribution from pharyngeal arch 3 property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png" xsd:anyURI [Term] id: UBERON:0001701 name: glossopharyngeal ganglion is_a: UBERON:0009127 ! epibranchial ganglion intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve relationship: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve relationship: RO:0002254 UBERON:0005491 ! has developmental contribution from glossopharyngeal neural crest relationship: RO:0002254 UBERON:0009125 ! has developmental contribution from petrosal placode [Term] id: UBERON:0001703 name: neurocranium is_a: UBERON:0011158 ! primary subdivision of skull relationship: BFO:0000050 UBERON:0003128 ! part of cranium relationship: protects UBERON:0000955 ! brain relationship: RO:0001015 UBERON:0000955 ! location of brain relationship: RO:0002202 UBERON:0004761 ! develops from cartilaginous neurocranium property_value: UBPROP:0000007 "neurocranial" xsd:string property_value: UBPROP:0000010 "It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton" xsd:string [Term] id: UBERON:0001708 name: jaw skeleton is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0011595 ! skeleton of jaw region relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton relationship: BFO:0000050 UBERON:0011595 ! part of jaw region relationship: RO:0002131 UBERON:0008895 ! overlaps splanchnocranium relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata relationship: RO:0002215 NBO:0000073 ! capable of chewing relationship: RO:0002576 UBERON:0011595 ! skeleton of jaw region property_value: IAO:0000116 "TODO - move ZFA:0001227 (it is the entire jaw skeleton)." xsd:string property_value: UBPROP:0000011 "There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983)." xsd:string [Term] id: UBERON:0001710 name: lower jaw region comment: See notes for jaw w.r.t skeletal element vs subdivision of head is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000475 ! organism subdivision intersection_of: RO:0002551 UBERON:0003278 ! has skeleton skeleton of lower jaw relationship: BFO:0000050 UBERON:0011595 ! part of jaw region relationship: RO:0002202 UBERON:0005867 ! develops from mandibular prominence relationship: RO:0002551 UBERON:0003278 ! has skeleton skeleton of lower jaw property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png" xsd:anyURI property_value: RO:0002171 UBERON:0001709 [Term] id: UBERON:0001714 name: cranial ganglion is_a: UBERON:0000045 ! ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: extends_fibers_into UBERON:0034713 ! cranial neuron projection bundle relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: extends_fibers_into UBERON:0034713 ! cranial neuron projection bundle [Term] id: UBERON:0001723 name: tongue is_a: UBERON:0000020 ! sense organ is_a: UBERON:0013765 ! digestive system element relationship: BFO:0000050 UBERON:0000165 ! part of mouth relationship: BFO:0000050 UBERON:0001033 ! part of gustatory system relationship: RO:0002202 UBERON:0008814 ! develops from pharyngeal arch system relationship: RO:0002202 UBERON:0010056 ! develops from future tongue relationship: RO:0002220 UBERON:0000166 ! adjacent to oral opening relationship: RO:0002254 UBERON:0006260 ! has developmental contribution from lingual swellings relationship: RO:0002254 UBERON:0006756 ! has developmental contribution from median lingual swelling relationship: RO:0002254 UBERON:0006757 ! has developmental contribution from lateral lingual swelling relationship: RO:0002433 UBERON:0001007 ! contributes to morphology of digestive system relationship: RO:0002495 UBERON:0010056 ! immediate transformation of future tongue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/a6/Tongue.agr.jpg" xsd:anyURI property_value: IAO:0000116 "in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence." xsd:string property_value: UBPROP:0000007 "glossal" xsd:string property_value: UBPROP:0000007 "lingual" xsd:string property_value: UBPROP:0000008 "Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods" xsd:string property_value: UBPROP:0000011 "The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions" xsd:string [Term] id: UBERON:0001725 name: cranial synchondrosis is_a: UBERON:0002215 ! synchondrosis intersection_of: UBERON:0002215 ! synchondrosis intersection_of: BFO:0000050 UBERON:0003129 ! part of skull relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:0001726 name: papilla of tongue is_a: UBERON:0000064 ! organ part relationship: BFO:0000050 UBERON:0005020 ! part of mucosa of tongue relationship: BFO:0000050 UBERON:0009471 ! part of dorsum of tongue [Term] id: UBERON:0001727 name: taste bud is_a: UBERON:0003212 ! gustatory organ is_a: UBERON:0004119 ! endoderm-derived structure relationship: BFO:0000050 UBERON:0002926 ! part of gustatory epithelium relationship: RO:0002202 UBERON:0007690 ! develops from early pharyngeal endoderm relationship: RO:0002215 GO:0050912 ! capable of detection of chemical stimulus involved in sensory perception of taste relationship: RO:0002433 UBERON:0001033 ! contributes to morphology of gustatory system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png" xsd:anyURI property_value: UBPROP:0000008 "In humans, saste buds may be found on the tongue, soft palatte, epiglottis and upper pharynx. In other species they may be found in more unusual places, such as the trunk, or on the barbels or fins of fish." xsd:string property_value: UBPROP:0000011 "arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN:1607950324 (todo - request cell terms from CL)" xsd:string [Term] id: UBERON:0001731 name: cavity of pharynx is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0006562 ! luminal space of pharynx relationship: BFO:0000050 UBERON:0006562 ! part of pharynx relationship: RO:0002202 UBERON:0001041 ! develops from foregut relationship: RO:0002572 UBERON:0006562 ! luminal space of pharynx property_value: UBPROP:0000008 "See notes for pharynx - as a grouping class this is probably too bad. We exclude WBbt:0005790 (pharyngeal lumen) because of the developmental relationship" xsd:string property_value: UBPROP:0000011 "TOODO check" xsd:string [Term] id: UBERON:0001737 name: larynx is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: RO:0002005 UBERON:0003716 ! innervated_by recurrent laryngeal nerve relationship: RO:0002202 UBERON:0008947 ! develops from respiratory primordium relationship: RO:0002433 UBERON:0001004 ! contributes to morphology of respiratory system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg" xsd:anyURI property_value: UBPROP:0000007 "laryngeal" xsd:string [Term] id: UBERON:0001739 name: laryngeal cartilage is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0010212 ! part of laryngeal apparatus relationship: RO:0002202 UBERON:0010213 ! develops from laryngeal pre-cartilage condensation property_value: UBPROP:0000202 FMA:64159 [Term] id: UBERON:0001750 name: lacrimal apparatus is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0010409 ! part of ocular surface region relationship: BFO:0000050 UBERON:0035639 ! part of ocular adnexa relationship: RO:0002160 NCBITaxon:32523 ! only in taxon Tetrapoda relationship: RO:0002202 UBERON:0000076 ! develops from external ectoderm relationship: RO:0002433 UBERON:0000019 ! contributes to morphology of camera-type eye property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png" xsd:anyURI property_value: IAO:0000116 "TODO - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal" xsd:string [Term] id: UBERON:0001759 name: vagus nerve is_a: UBERON:0001785 ! cranial nerve is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001785 ! cranial nerve intersection_of: extends_fibers_into UBERON:0011775 ! vagus nerve nucleus relationship: BFO:0000050 UBERON:0001033 ! part of gustatory system relationship: extends_fibers_into UBERON:0002075 ! viscus relationship: extends_fibers_into UBERON:0011775 ! vagus nerve nucleus relationship: RO:0002254 UBERON:0005239 ! has developmental contribution from basal plate metencephalon property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001766 name: anterior chamber of eyeball is_a: UBERON:0006311 ! chamber of eyeball relationship: BFO:0000050 UBERON:0001801 ! part of anterior segment of eyeball relationship: RO:0002433 UBERON:0001801 ! contributes to morphology of anterior segment of eyeball property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI [Term] id: UBERON:0001768 name: uvea is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 UBERON:0001801 ! part of anterior segment of eyeball relationship: BFO:0000051 UBERON:0001769 ! has part iris relationship: BFO:0000051 UBERON:0001775 ! has part ciliary body relationship: BFO:0000051 UBERON:0001776 ! has part optic choroid relationship: RO:0002433 UBERON:0000019 ! contributes to morphology of camera-type eye property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png" xsd:anyURI property_value: IAO:0000116 "TODO - check child terms, isa vs partof. See also MA:0001284 ! tunica vasculosa plexus" xsd:string property_value: UBPROP:0000007 "uveal" xsd:string [Term] id: UBERON:0001769 name: iris is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0011892 ! part of anterior uvea relationship: RO:0002202 UBERON:0004128 ! develops from optic vesicle relationship: RO:0002433 UBERON:0011892 ! contributes to morphology of anterior uvea property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "iridial" xsd:string property_value: UBPROP:0000008 "The avian iris and ciliary body undergoes a transition from smooth-to-striated muscle during embryonic development [DOI:dx.doi.org/10.1006/dbio.1998.9019]" xsd:string [Term] id: UBERON:0001772 name: corneal epithelium is_a: UBERON:0010304 {gci_relation="BFO:0000050", gci_filler="NCBITaxon:7955"} ! non-keratinized stratified squamous epithelium is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: RO:0002007 UBERON:0000964 ! bounding layer of cornea relationship: BFO:0000050 UBERON:0000964 ! part of cornea relationship: RO:0002007 UBERON:0000964 ! bounding layer of cornea relationship: RO:0002202 UBERON:0000076 ! develops from external ectoderm relationship: RO:0002433 UBERON:0000964 ! contributes to morphology of cornea property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "In Humans: It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei" xsd:string property_value: UBPROP:0000008 "In zebrafish: nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals" xsd:string [Term] id: UBERON:0001773 name: sclera comment: Disease notes: implicated in rheumatoid arthritis. is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: BFO:0000050 UBERON:0012430 ! part of tunica fibrosa of eyeball relationship: RO:0000086 PATO:0000963 ! has quality opaque relationship: RO:0002202 UBERON:0003314 ! develops from eye mesenchyme relationship: RO:0002433 UBERON:0000019 ! contributes to morphology of camera-type eye property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: UBPROP:0000007 "scleral" xsd:string property_value: UBPROP:0000008 "in fish, reptiles and monotremes the connective tissue of the sclera is skeletal" xsd:string property_value: UBPROP:0000010 "continuous with the dura mater and the cornea; The sclera forms the posterior five-sixths of the connective tissue coat of the globe." xsd:string property_value: UBPROP:0000011 "Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson]." xsd:string property_value: UBPROP:0000011 "Seko et al demonstrate chondrogenic potential and identify this as connective tissue[DOI:10.1371/journal.pone.0003709]." xsd:string [Term] id: UBERON:0001774 name: skeletal muscle of trunk is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0004479 ! part of musculature of trunk property_value: IAO:0000116 "Note that this class excludes smooth muscle elements in the trunk region, such as the internal anal sphincter. This appears to be consistent with other ontologies such as FMA and ZFA which appear to only include skeletal muscles here. In fact the MA class 'trunk muscle' is classified as a 'set of skeletal muscles'." xsd:string property_value: UBPROP:0000012 "Many ontologies do not appear to have a coherent distinction between an individual muscle and the musculature (i.e. the set of muscles in a region), so we group all together here." xsd:string [Term] id: UBERON:0001775 name: ciliary body is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0011892 ! part of anterior uvea relationship: BFO:0000051 UBERON:0001605 ! has part ciliary muscle relationship: BFO:0000051 UBERON:0010427 ! has part ciliary processes relationship: RO:0002202 UBERON:0002346 ! develops from neurectoderm relationship: RO:0002433 UBERON:0011892 ! contributes to morphology of anterior uvea property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001776 name: optic choroid is_a: UBERON:0002203 ! vasculature of eye relationship: BFO:0000050 UBERON:0001768 ! part of uvea relationship: BFO:0000050 UBERON:0019207 ! part of chorioretinal region relationship: RO:0002131 UBERON:0001802 ! overlaps posterior segment of eyeball relationship: RO:0002220 UBERON:0000966 ! adjacent to retina relationship: RO:0002220 UBERON:0001773 ! adjacent to sclera relationship: RO:0002220 UBERON:0011892 ! adjacent to anterior uvea relationship: RO:0002433 UBERON:0001768 ! contributes to morphology of uvea property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI property_value: IAO:0000116 "check choroid vs choroid layer; check ZFA/TAO placement - no homology assertion in VHOG. Note this is entirely in the posterior region of eyeball in ZFA" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "choroidal" xsd:string [Term] id: UBERON:0001777 name: substantia propria of cornea is_a: UBERON:0003891 ! stroma is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: BFO:0000050 UBERON:0000964 ! part of cornea relationship: BFO:0000050 UBERON:0000964 ! part of cornea relationship: RO:0002202 UBERON:0007213 ! develops from mesenchyme derived from head neural crest relationship: RO:0002220 UBERON:0004367 ! adjacent to Descemet's membrane relationship: RO:0002220 UBERON:0004370 ! adjacent to anterior limiting lamina of cornea relationship: RO:0002433 UBERON:0000964 ! contributes to morphology of cornea property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png" xsd:anyURI [Term] id: UBERON:0001778 name: ciliary epithelium is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001775 ! part of ciliary body relationship: BFO:0000050 UBERON:0001775 ! part of ciliary body relationship: BFO:0000051 GO:0048770 ! has part pigment granule relationship: RO:0003000 UBERON:0001796 ! produces aqueous humor of eyeball property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001779 name: iris stroma is_a: UBERON:0003891 ! stroma is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: BFO:0000050 UBERON:0001769 ! part of iris relationship: BFO:0000050 UBERON:0001769 ! part of iris relationship: RO:0002433 UBERON:0001769 ! contributes to morphology of iris property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png" xsd:anyURI [Term] id: UBERON:0001780 name: spinal nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: extends_fibers_into UBERON:0002240 ! spinal cord relationship: BFO:0000050 RO:0002577 ! part of system relationship: extends_fibers_into UBERON:0002240 ! spinal cord property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001781 name: layer of retina is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0022303 ! nervous system cell part layer relationship: BFO:0000050 UBERON:0000966 ! part of retina relationship: RO:0002433 UBERON:0000966 ! contributes to morphology of retina [Term] id: UBERON:0001785 name: cranial nerve is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0034713 ! cranial neuron projection bundle intersection_of: UBERON:0001021 ! nerve intersection_of: BSPO:0000096 UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0000955 ! brain relationship: BSPO:0000096 UBERON:0001780 ! spinal nerve relationship: RO:0002254 UBERON:0003099 ! has developmental contribution from cranial neural crest property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/18/Brain_human_normal_inferior_view_with_labels_en-2.svg" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/84/Brain_human_normal_inferior_view_with_labels_en.svg" xsd:anyURI property_value: IAO:0000116 "classified as neural tree organ, not nerve in FMA. CN II poses a challenge here as it is not strictly a nerve, yet is expected to be classified under CN." xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000012 "See https://github.com/obophenotype/mouse-anatomy-ontology/issues/6" xsd:string [Term] id: UBERON:0001796 name: aqueous humor of eyeball is_a: UBERON:0006312 ! ocular refractive media is_a: UBERON:0006314 ! bodily fluid relationship: BFO:0000050 UBERON:0001766 ! part of anterior chamber of eyeball relationship: RO:0002433 UBERON:0001766 ! contributes to morphology of anterior chamber of eyeball property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI [Term] id: UBERON:0001800 name: sensory ganglion is_a: UBERON:0000045 ! ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: extends_fibers_into UBERON:0001027 ! sensory nerve relationship: BFO:0000050 RO:0002577 ! part of system relationship: extends_fibers_into UBERON:0001027 ! sensory nerve [Term] id: UBERON:0001801 name: anterior segment of eyeball is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye relationship: BSPO:0000123 UBERON:0010230 ! eyeball of camera-type eye relationship: RO:0002433 UBERON:0000019 ! contributes to morphology of camera-type eye property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png" xsd:anyURI [Term] id: UBERON:0001802 name: posterior segment of eyeball is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye relationship: BSPO:0000122 UBERON:0010230 ! eyeball of camera-type eye relationship: RO:0002433 UBERON:0000019 ! contributes to morphology of camera-type eye property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg" xsd:anyURI [Term] id: UBERON:0001803 name: epithelium of lens is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000965 ! part of lens of camera-type eye relationship: BFO:0000050 UBERON:0000965 ! part of lens of camera-type eye relationship: RO:0002433 UBERON:0000965 ! contributes to morphology of lens of camera-type eye property_value: IAO:0000232 "this class is the superclass of the anterior epithelium and equatorial epithlium, although the term 'lens epithelium' may refer specifically to the former" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001804 name: capsule of lens is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: RO:0002007 UBERON:0000965 ! bounding layer of lens of camera-type eye relationship: BFO:0000050 UBERON:0000965 ! part of lens of camera-type eye relationship: BFO:0000051 CHEBI:35722 ! has part sulfated glycosaminoglycan relationship: BFO:0000051 GO:0005587 ! has part collagen type IV trimer relationship: RO:0000086 PATO:0000964 ! has quality transparent relationship: RO:0002007 UBERON:0000965 ! bounding layer of lens of camera-type eye relationship: RO:0002202 UBERON:0005614 ! develops from lens anterior epithelium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png" xsd:anyURI property_value: UBPROP:0000010 "synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs). [Wikipedia:Capsule_of_lens" xsd:string [Term] id: UBERON:0001805 name: autonomic ganglion is_a: UBERON:0003338 ! ganglion of peripheral nervous system intersection_of: UBERON:0000045 ! ganglion intersection_of: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system relationship: extends_fibers_into UBERON:0034728 ! autonomic nerve property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI [Term] id: UBERON:0001806 name: sympathetic ganglion is_a: UBERON:0001805 ! autonomic ganglion is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000045 ! ganglion intersection_of: BFO:0000050 UBERON:0000013 ! part of sympathetic nervous system relationship: BFO:0000050 UBERON:0000013 ! part of sympathetic nervous system relationship: extends_fibers_into UBERON:0034729 ! sympathetic nerve relationship: RO:0002202 UBERON:0003083 ! develops from trunk neural crest relationship: RO:0002433 UBERON:0000013 ! contributes to morphology of sympathetic nervous system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI [Term] id: UBERON:0001817 name: lacrimal gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015154 ! lateral gland of orbital region intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0001750 ! part of lacrimal apparatus relationship: BFO:0000050 UBERON:0001750 ! part of lacrimal apparatus relationship: RO:0002202 UBERON:0022284 ! develops from lacrimal gland bud relationship: RO:0002433 UBERON:0001750 ! contributes to morphology of lacrimal apparatus property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png" xsd:anyURI property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: UBPROP:0000008 "In humans, they are situated in the upper, outer portion of each orbit" xsd:string property_value: UBPROP:0000008 "Innervation is highly complex and species-specific" xsd:string [Term] id: UBERON:0001824 name: mucosa of larynx is_a: UBERON:0000379 ! tracheal mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0001737 ! part of larynx [Term] id: UBERON:0001827 name: secretion of lacrimal gland is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: RO:0003001 UBERON:0001817 ! produced by lacrimal gland relationship: RO:0003001 UBERON:0001817 ! produced by lacrimal gland [Term] id: UBERON:0001833 name: lip is_a: UBERON:0003102 ! surface structure relationship: BFO:0000050 UBERON:0000165 ! part of mouth relationship: RO:0002221 UBERON:0000166 ! surrounds oral opening relationship: RO:0002433 UBERON:0000165 ! contributes to morphology of mouth property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/90/Lips.JPG" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg" xsd:anyURI property_value: RO:0002161 NCBITaxon:8782 property_value: UBPROP:0000007 "labial" xsd:string [Term] id: UBERON:0001835 name: lower lip is_a: UBERON:0001833 ! lip intersection_of: UBERON:0001833 ! lip intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region relationship: RO:0002202 UBERON:0011596 ! develops from future lower lip property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg" xsd:anyURI [Term] id: UBERON:0001851 name: cortex is_a: UBERON:0000064 ! organ part relationship: RO:0002007 UBERON:0000062 ! bounding layer of organ property_value: UBPROP:0000007 "cortical" xsd:string [Term] id: UBERON:0001891 name: midbrain is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: RO:0002202 UBERON:0009616 ! develops from presumptive midbrain relationship: RO:0002254 UBERON:0003849 ! has developmental contribution from mesencephalic neural crest relationship: RO:0002433 UBERON:0000955 ! contributes to morphology of brain relationship: RO:0002495 UBERON:0009616 ! immediate transformation of presumptive midbrain property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG" xsd:anyURI property_value: IAO:0000116 "developmental relationships need revised" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "mesencephalic" xsd:string [Term] id: UBERON:0001892 name: rhombomere is_a: UBERON:0004731 ! neuromere intersection_of: UBERON:0004731 ! neuromere intersection_of: BFO:0000050 UBERON:0007277 ! part of presumptive hindbrain relationship: BFO:0000050 UBERON:0007277 ! part of presumptive hindbrain property_value: UBPROP:0000008 "In human embryonic development, the rhombomeres are present by day 29" xsd:string property_value: UBPROP:0000012 "DHBA divides this into A(1-3),B(4),C(5-7) and D(8)" xsd:string [Term] id: UBERON:0001895 name: metencephalon comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. is_a: UBERON:0004733 ! segmental subdivision of hindbrain relationship: RO:0002202 UBERON:0010092 ! develops from future metencephalon relationship: RO:0002433 UBERON:0002028 ! contributes to morphology of hindbrain relationship: RO:0002495 UBERON:0010092 ! immediate transformation of future metencephalon property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: RO:0002174 NCBITaxon:7955 [Term] id: UBERON:0001896 name: medulla oblongata is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0002298 ! part of brainstem relationship: BFO:0000050 UBERON:0005290 ! part of myelencephalon relationship: RO:0002215 GO:0002027 ! capable of regulation of heart rate relationship: RO:0002215 GO:0043576 ! capable of regulation of respiratory gaseous exchange relationship: RO:0002215 GO:0044058 ! capable of regulation of digestive system process property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001901 name: epithelium of trachea is_a: UBERON:0008397 ! tracheobronchial epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0003126 ! part of trachea relationship: RO:0002202 UBERON:0003258 ! develops from endoderm of foregut relationship: RO:0002433 UBERON:0003126 ! contributes to morphology of trachea property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001902 name: epithelium of small intestine is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0001204 ! part of mucosa of small intestine [Term] id: UBERON:0001915 name: endothelium of capillary is_a: UBERON:0008339 ! microvascular endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0001982 ! part of capillary relationship: BFO:0000050 UBERON:0001982 ! part of capillary [Term] id: UBERON:0001916 name: endothelium of arteriole is_a: UBERON:0004700 ! arterial system endothelium is_a: UBERON:0008339 ! microvascular endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0001980 ! part of arteriole relationship: BFO:0000050 UBERON:0001980 ! part of arteriole property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001917 name: endothelium of artery is_a: UBERON:0003915 ! endothelial tube is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0001637 ! part of artery relationship: BFO:0000050 UBERON:0001637 ! part of artery [Term] id: UBERON:0001918 name: endothelium of venule is_a: UBERON:0004701 ! venous system endothelium is_a: UBERON:0008339 ! microvascular endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0001979 ! part of venule relationship: BFO:0000050 UBERON:0001979 ! part of venule [Term] id: UBERON:0001919 name: endothelium of vein is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004701 ! venous system endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0001638 ! part of vein relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0001943 name: midbrain tegmentum comment: 'tegmentum' is used generically for the ventral part of the brainstem (ISBN:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum is_a: UBERON:0002616 ! regional part of brain relationship: BFO:0000050 UBERON:0001891 ! part of midbrain relationship: BFO:0000050 UBERON:0002298 ! part of brainstem relationship: RO:0002202 UBERON:0010285 ! develops from midbrain basal plate property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001948 name: regional part of spinal cord is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0001956 name: cartilage of bronchus is_a: UBERON:0003603 ! lower respiratory tract cartilage intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: RO:0002433 UBERON:0002185 ! contributes to morphology of bronchus relationship: RO:0002473 UBERON:0001994 ! composed primarily of hyaline cartilage tissue [Term] id: UBERON:0001957 name: submucosa of bronchus is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0002185 ! part of bronchus [Term] id: UBERON:0001958 name: terminal bronchiole epithelium is_a: UBERON:0002051 ! epithelium of bronchiole intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole relationship: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string [Term] id: UBERON:0001969 name: blood plasma is_a: UBERON:0000179 ! haemolymphatic fluid relationship: BFO:0000050 UBERON:0000178 ! part of blood relationship: BFO:0000051 GO:0005577 ! has part fibrinogen complex [Term] id: UBERON:0001970 name: bile is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: RO:0003001 UBERON:0002107 ! produced by liver relationship: BFO:0000051 CHEBI:16990 ! has part bilirubin IXalpha relationship: BFO:0000051 CHEBI:22868 ! has part bile salt relationship: BFO:0000051 CHEBI:36277 ! has part bile acid salt relationship: RO:0000086 PATO:0001735 ! has quality liquid configuration relationship: RO:0002216 GO:0007586 ! capable of part of digestion relationship: RO:0003001 UBERON:0002107 ! produced by liver property_value: UBPROP:0000008 "In many species, bile is stored in the gallbladder and upon eating is discharged into the duodenum." xsd:string property_value: UBPROP:0000009 "aids the process of digestion of lipids in the small intestine" xsd:string property_value: UBPROP:0000009 "bile salts function to emulsify dietary fats and facilitate their intestinal absorption" xsd:string property_value: UBPROP:0000009 "elimination of cholesterol" xsd:string property_value: UBPROP:0000009 "major excretory route for potentially harmful exogenous lipophilic substances" xsd:string property_value: UBPROP:0000009 "many hormones and pheromones are excreted in bile, and contribute to growth and development of the intestine in some species and provide attractants for the weaning of non-human vertebrates" xsd:string property_value: UBPROP:0000009 "protects the organism from enteric infections by excreting immune globulin A (IgA), inflammatory cytokines, and stimulating the innate immune system in the intestine" xsd:string [Term] id: UBERON:0001971 name: gastric juice is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: RO:0003001 UBERON:0011953 ! produced by stomach glandular region relationship: RO:0003001 UBERON:0011953 ! produced by stomach glandular region [Term] id: UBERON:0001972 name: submucosa of esophagus is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus [Term] id: UBERON:0001974 name: lamina propria of esophagus is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0002469 ! part of esophagus mucosa [Term] id: UBERON:0001975 name: serosa of esophagus is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus [Term] id: UBERON:0001976 name: epithelium of esophagus is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0002469 ! part of esophagus mucosa relationship: RO:0002433 UBERON:0001043 ! contributes to morphology of esophagus property_value: IAO:0000116 "TODO check epithelium types: in FMA: Nonkeratinizing stratified squamous epithelium; mouse has basal and squamous subtypes; in ZFA it is columnar" xsd:string [Term] id: UBERON:0001978 name: parenchyma of pancreas is_a: UBERON:0000353 ! parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas relationship: BFO:0000050 UBERON:0001264 ! part of pancreas property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001979 name: venule is_a: UBERON:0003920 ! venous blood vessel is_a: UBERON:8410081 ! blood microvessel relationship: RO:0002176 UBERON:0001638 ! connects vein relationship: RO:0002176 UBERON:0001982 ! connects capillary property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001980 name: arteriole is_a: UBERON:0003509 ! arterial blood vessel is_a: UBERON:8410081 ! blood microvessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: RO:0002176 UBERON:0001637 ! connects artery intersection_of: RO:0002176 UBERON:0001982 ! connects capillary relationship: RO:0002176 UBERON:0001637 ! connects artery relationship: RO:0002176 UBERON:0001982 ! connects capillary relationship: RO:0002433 UBERON:0001637 ! contributes to morphology of artery property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg" xsd:anyURI [Term] id: UBERON:0001981 name: blood vessel is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure relationship: BFO:0000050 UBERON:0004537 ! part of blood vasculature relationship: BFO:0000051 UBERON:0007500 ! has part epithelial tube open at both ends relationship: channel_for UBERON:0000178 ! blood relationship: RO:0000086 PATO:0002045 ! has quality dendritic relationship: RO:0002202 UBERON:0004872 ! develops from splanchnic layer of lateral plate mesoderm relationship: RO:0002202 UBERON:0006965 ! develops from vascular cord relationship: RO:0002216 GO:0008015 ! capable of part of blood circulation property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg" xsd:anyURI property_value: IAO:0000116 "consider adopting the EMAPA superclass 'vascular element', which includes microvasculature (e.g. capillaries), vascular plexus" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "annelids have blood vessels, but this class is not applicable to annelids." xsd:string [Term] id: UBERON:0001982 name: capillary is_a: UBERON:8410081 ! blood microvessel intersection_of: UBERON:8410081 ! blood microvessel intersection_of: RO:0002176 UBERON:0001979 ! connects venule intersection_of: RO:0002176 UBERON:0001980 ! connects arteriole relationship: RO:0002176 UBERON:0001979 ! connects venule relationship: RO:0002176 UBERON:0001980 ! connects arteriole property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/2f/A_red_blood_cell_in_a_capillary,_pancreatic_tissue_-_TEM.jpg" xsd:anyURI property_value: IAO:0000116 "not all sources agree capillary is a blood vessel - consider adopting EMAPA superclass of vascular element" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2186" xsd:string property_value: UBPROP:0000010 "capillaries lack tunica media and tunica adventitia; only the endothelial wall of the tunica intima belongs" xsd:string [Term] id: UBERON:0001985 name: corneal endothelium is_a: UBERON:0001986 ! endothelium is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0000964 ! part of cornea relationship: BFO:0000050 UBERON:0000964 ! part of cornea relationship: RO:0002220 UBERON:0001766 ! adjacent to anterior chamber of eyeball relationship: RO:0002433 UBERON:0000964 ! contributes to morphology of cornea property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0001986 name: endothelium comment: The term 'endothelium' has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980) is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0012275 ! meso-epithelium relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "endothelial" xsd:string [Term] id: UBERON:0001988 name: feces is_a: UBERON:0000174 ! excreta intersection_of: UBERON:0000174 ! excreta intersection_of: RO:0002353 GO:0030421 ! output of defecation relationship: RO:0002353 GO:0030421 ! output of defecation property_value: UBPROP:0000007 "fecal" xsd:string [Term] id: UBERON:0001994 name: hyaline cartilage tissue is_a: UBERON:0002418 ! cartilage tissue relationship: RO:0002473 GO:0005585 ! composed primarily of collagen type II trimer property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray292.png" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg" xsd:anyURI [Term] id: UBERON:0002012 name: pulmonary artery is_a: UBERON:0001637 ! artery is_a: UBERON:0013768 ! great vessel of heart intersection_of: UBERON:0001637 ! artery intersection_of: BFO:0000050 UBERON:0008886 ! part of pulmonary vascular system intersection_of: RO:0002178 UBERON:0002048 ! supplies lung disjoint_from: UBERON:0004573 ! systemic artery relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0008886 ! part of pulmonary vascular system relationship: RO:0002150 UBERON:0002333 ! continuous with pulmonary trunk relationship: RO:0002178 UBERON:0002048 ! supplies lung relationship: RO:0002202 UBERON:0002061 ! develops from truncus arteriosus relationship: RO:0002202 UBERON:0003123 ! develops from pharyngeal arch artery 6 relationship: RO:0002202 UBERON:0005339 ! develops from outflow tract pulmonary component property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung[WP]" xsd:string [Term] id: UBERON:0002015 name: kidney capsule is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0011824 ! fibrous connective tissue intersection_of: UBERON:0011824 ! fibrous connective tissue intersection_of: RO:0002007 UBERON:0002113 ! bounding layer of kidney relationship: BFO:0000050 UBERON:0002113 ! part of kidney relationship: RO:0002007 UBERON:0002113 ! bounding layer of kidney relationship: RO:0002433 UBERON:0002113 ! contributes to morphology of kidney property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000009 "provides some protection from trauma and damage." xsd:string property_value: UBPROP:0000010 "The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly).[Wikipedia:Kidney_capsule]" xsd:string [Term] id: UBERON:0002016 name: pulmonary vein is_a: UBERON:0001638 ! vein is_a: UBERON:0013768 ! great vessel of heart intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0002048 ! drains lung relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0008886 ! part of pulmonary vascular system relationship: RO:0002170 UBERON:0002079 ! connected to left cardiac atrium relationship: RO:0002179 UBERON:0002048 ! drains lung relationship: RO:0002202 UBERON:0002061 ! develops from truncus arteriosus property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000202 FMA:70827 [Term] id: UBERON:0002017 name: portal vein is_a: UBERON:0001638 ! vein relationship: BFO:0000050 UBERON:0005806 ! part of portal system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002019 name: accessory XI nerve is_a: UBERON:0035642 ! laryngeal nerve intersection_of: UBERON:0001021 ! nerve intersection_of: extends_fibers_into UBERON:0020358 ! accessory XI nerve nucleus relationship: BFO:0000050 RO:0002577 ! part of system relationship: extends_fibers_into UBERON:0020358 ! accessory XI nerve nucleus relationship: RO:0002160 NCBITaxon:32523 ! only in taxon Tetrapoda property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png" xsd:anyURI [Term] id: UBERON:0002020 name: gray matter is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: RO:0002473 GO:0043025 ! composed primarily of neuronal cell body property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI [Term] id: UBERON:0002028 name: hindbrain is_a: UBERON:0002616 ! regional part of brain relationship: RO:0002131 UBERON:0002298 ! overlaps brainstem relationship: RO:0002160 NCBITaxon:89593 ! only in taxon Craniata relationship: RO:0002202 UBERON:0007277 ! develops from presumptive hindbrain relationship: RO:0002433 UBERON:0000955 ! contributes to morphology of brain relationship: RO:0002495 UBERON:0007277 ! immediate transformation of presumptive hindbrain property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "rhombencephalic" xsd:string [Term] id: UBERON:0002029 name: epithelium of gall bladder is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0034932 ! epithelium of biliary system intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002110 ! part of gallbladder relationship: BFO:0000050 UBERON:0002110 ! part of gallbladder relationship: RO:0002433 UBERON:0002110 ! contributes to morphology of gallbladder [Term] id: UBERON:0002031 name: epithelium of bronchus is_a: UBERON:0008397 ! tracheobronchial epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: RO:0002433 UBERON:0002185 ! contributes to morphology of bronchus [Term] id: UBERON:0002036 name: striated muscle tissue is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:0002040 name: bronchial artery comment: Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0004573 ! systemic artery intersection_of: BFO:0000050 UBERON:0004571 ! part of systemic arterial system intersection_of: RO:0002178 UBERON:0002048 ! supplies lung relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0002048 ! supplies lung property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray1032.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002047 name: pontine raphe nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: BFO:0000050 UBERON:0003023 ! part of pontine tegmentum relationship: BFO:0000050 UBERON:0004684 ! part of raphe nuclei [Term] id: UBERON:0002048 name: lung comment: Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP] is_a: UBERON:0000171 ! respiration organ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 UBERON:0000170 ! part of pair of lungs relationship: BSPO:0000126 UBERON:0000170 ! pair of lungs relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata relationship: RO:0002202 UBERON:0000118 ! develops from lung bud relationship: RO:0002433 UBERON:0001004 ! contributes to morphology of respiratory system property_value: RO:0002175 NCBITaxon:9606 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/701" xsd:anyURI property_value: UBPROP:0000007 "pulmonary" xsd:string property_value: UBPROP:0000008 "respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi" xsd:string [Term] id: UBERON:0002049 name: vasculature is_a: UBERON:0000477 ! anatomical cluster relationship: BFO:0000050 UBERON:0007798 ! part of vascular system relationship: BFO:0000051 UBERON:0000179 ! has part haemolymphatic fluid relationship: RO:0002473 UBERON:0000055 ! composed primarily of vessel property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg" xsd:anyURI property_value: IAO:0000116 "see also: vascular system. Consider merging?" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "vascular" xsd:string [Term] id: UBERON:0002050 name: embryonic structure is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo relationship: BFO:0000050 UBERON:0000922 ! part of embryo [Term] id: UBERON:0002051 name: epithelium of bronchiole is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0008397 ! tracheobronchial epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002186 ! part of bronchiole relationship: BFO:0000050 UBERON:0005039 ! part of mucosa of bronchiole relationship: RO:0002433 UBERON:0002186 ! contributes to morphology of bronchiole property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002061 name: truncus arteriosus is_a: UBERON:0001637 ! artery is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003498 ! heart blood vessel relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract relationship: BFO:0000050 UBERON:0005498 ! part of primitive heart tube relationship: RO:0002202 UBERON:0005432 ! develops from aortic sac [Term] id: UBERON:0002062 name: endocardial cushion comment: GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt. JB: Patterning makes the cushions lay down connective tissue in three domains that force out the local endothelial lining and so the leaflets form is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0009751 ! cardiac mesenchyme is_a: UBERON:0014387 ! mesenchyme derived from neural crest relationship: BFO:0000050 UBERON:0002165 ! part of endocardium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png" xsd:anyURI [Term] id: UBERON:0002063 name: sinus venosus is_a: UBERON:0004151 ! cardiac chamber disjoint_from: UBERON:0006615 ! venous sinus relationship: BFO:0000050 UBERON:0002350 ! part of conducting system of heart relationship: RO:0002202 UBERON:0007278 ! develops from presumptive sinus venosus relationship: RO:0002495 UBERON:0007278 ! immediate transformation of presumptive sinus venosus property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png" xsd:anyURI property_value: UBPROP:0000008 "In fish, receives venous blood from the systemic circulation through paired hepatic veins, anterior jugular veins and Cuvierian ducts[PMID:20735616]" xsd:string property_value: UBPROP:0000008 "In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis. The sinus venosus also forms the SA node and the coronary sinus. In the embryo, the thin walls of the sinus venosus are connected below with the right ventricle, and medially with the left atrium, but are free in the rest of their extent. It receives blood from the vitelline vein, umbilical vein and common cardinal vein. It originally starts as a paired structure but shifts towards associating only with the right atrium as the embryonic heart develops. The left portion shrinks in size and eventually forms the coronary sinus and oblique vein of the left atrium, whereas the right part becomes incorporated into the right atrium to form the sinus venarmu" xsd:string [Term] id: UBERON:0002067 name: dermis is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013754 ! integumentary system layer relationship: BFO:0000050 UBERON:0002097 ! part of skin of body relationship: BFO:0000051 GO:0071953 ! has part elastic fiber relationship: BFO:0000051 UBERON:0011860 ! has part collection of collagen fibrils relationship: BSPO:0000107 UBERON:0001003 ! skin epidermis relationship: BSPO:0000108 UBERON:0002072 ! hypodermis relationship: RO:0002202 UBERON:0010083 ! develops from future dermis relationship: RO:0002473 UBERON:0002384 ! composed primarily of connective tissue relationship: RO:0002495 UBERON:0010083 ! immediate transformation of future dermis property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/23/EpidermisPainted.svg" xsd:anyURI property_value: IAO:0000116 "Consider adding a layer-of-skin grouping class for all skin layers" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "dermal" xsd:string [Term] id: UBERON:0002072 name: hypodermis is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: BFO:0000050 UBERON:0002199 ! part of integument relationship: BSPO:0000107 UBERON:0002067 ! dermis relationship: BSPO:0000108 UBERON:0001015 ! musculature relationship: RO:0002473 UBERON:0001013 ! composed primarily of adipose tissue relationship: RO:0002473 UBERON:0011825 ! composed primarily of loose connective tissue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "hypodermal" xsd:string property_value: UBPROP:0000007 "subcutaneous" xsd:string property_value: UBPROP:0000007 "subcutaneus" xsd:string [Term] id: UBERON:0002075 name: viscus is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0000062 ! organ intersection_of: RO:0001025 UBERON:0002323 ! located in coelemic cavity lumen relationship: RO:0001025 UBERON:0002323 ! located in coelemic cavity lumen [Term] id: UBERON:0002078 name: right cardiac atrium is_a: UBERON:0002081 ! cardiac atrium is_a: UBERON:0035554 ! right cardiac chamber intersection_of: UBERON:0002081 ! cardiac atrium intersection_of: BSPO:0000121 UBERON:0000948 ! heart relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0004537 ! connected to blood vasculature property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002079 name: left cardiac atrium is_a: UBERON:0002081 ! cardiac atrium is_a: UBERON:0035553 ! left cardiac chamber intersection_of: UBERON:0002081 ! cardiac atrium intersection_of: BSPO:0000120 UBERON:0000948 ! heart relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0004537 ! connected to blood vasculature property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002080 name: heart right ventricle is_a: UBERON:0002082 ! cardiac ventricle is_a: UBERON:0035554 ! right cardiac chamber intersection_of: UBERON:0002082 ! cardiac ventricle intersection_of: BSPO:0000121 UBERON:0000948 ! heart relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0004537 ! connected to blood vasculature relationship: RO:0002202 UBERON:0009889 ! develops from secondary heart field relationship: RO:0002254 UBERON:0004706 ! has developmental contribution from bulbus cordis property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: UBPROP:0000008 "In mammals continuous with the pulmonary arteries" xsd:string [Term] id: UBERON:0002081 name: cardiac atrium is_a: UBERON:0004151 ! cardiac chamber relationship: RO:0002202 UBERON:0010227 ! develops from future cardiac atrium relationship: RO:0002433 UBERON:0000948 ! contributes to morphology of heart relationship: RO:0002495 UBERON:0010227 ! immediate transformation of future cardiac atrium [Term] id: UBERON:0002082 name: cardiac ventricle is_a: UBERON:0004151 ! cardiac chamber relationship: RO:0002202 UBERON:0006283 ! develops from future cardiac ventricle relationship: RO:0002433 UBERON:0000948 ! contributes to morphology of heart relationship: RO:0002495 UBERON:0006283 ! immediate transformation of future cardiac ventricle [Term] id: UBERON:0002084 name: heart left ventricle is_a: UBERON:0002082 ! cardiac ventricle is_a: UBERON:0035553 ! left cardiac chamber intersection_of: UBERON:0002082 ! cardiac ventricle intersection_of: BSPO:0000120 UBERON:0000948 ! heart relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002150 UBERON:0000947 ! continuous with aorta relationship: RO:0002170 UBERON:0004537 ! connected to blood vasculature relationship: RO:0002202 UBERON:0004140 ! develops from primary heart field property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: UBPROP:0000008 "In mammals continuous with aorta" xsd:string [Term] id: UBERON:0002085 name: interatrial septum is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: RO:0002220 UBERON:0002078 ! adjacent to right cardiac atrium intersection_of: RO:0002220 UBERON:0002079 ! adjacent to left cardiac atrium relationship: RO:0002220 UBERON:0002078 ! adjacent to right cardiac atrium relationship: RO:0002220 UBERON:0002079 ! adjacent to left cardiac atrium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png" xsd:anyURI [Term] id: UBERON:0002090 name: postcranial axial skeleton comment: previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above). Status: MA - fixed. is_a: UBERON:0010912 ! subdivision of skeleton relationship: BFO:0000050 UBERON:0005944 ! part of axial skeleton plus cranial skeleton relationship: BFO:0000050 UBERON:0011138 ! part of postcranial axial skeletal system relationship: RO:0002202 UBERON:0003089 ! develops from sclerotome property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] id: UBERON:0002091 name: appendicular skeleton is_a: UBERON:0010912 ! subdivision of skeleton relationship: BFO:0000050 UBERON:0011249 ! part of appendicular skeletal system relationship: RO:0002131 UBERON:0000026 ! overlaps appendage relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata relationship: RO:0002433 UBERON:0001434 ! contributes to morphology of skeletal system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7c/Appendicular_skeleton_diagram.svg" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Appendages-and-the-appendicular-skeleton" xsd:anyURI [Term] id: UBERON:0002092 name: brain dura mater is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002363 ! dura mater intersection_of: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0002093 name: spinal dura mater is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003292 ! meninx of spinal cord intersection_of: UBERON:0002363 ! dura mater intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0002094 name: interventricular septum is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: RO:0002220 UBERON:0002080 ! adjacent to heart right ventricle intersection_of: RO:0002220 UBERON:0002084 ! adjacent to heart left ventricle relationship: RO:0002220 UBERON:0002080 ! adjacent to heart right ventricle relationship: RO:0002220 UBERON:0002084 ! adjacent to heart left ventricle property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002095 name: mesentery is_a: UBERON:0000042 ! serous membrane relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray1038.png" xsd:anyURI property_value: UBPROP:0000007 "mesenteric" xsd:string [Term] id: UBERON:0002097 name: skin of body is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0002199 ! part of integument relationship: RO:0002202 UBERON:0011272 ! develops from embryonic skin basal layer relationship: RO:0002473 UBERON:0000014 ! composed primarily of zone of skin property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg" xsd:anyURI property_value: IAO:0000232 "consider 'integumentary system' for invertebrates" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002099 name: cardiac septum is_a: UBERON:0003037 ! septum is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003037 ! septum intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0000948 ! part of heart relationship: RO:0002220 UBERON:0004151 ! adjacent to cardiac chamber relationship: RO:0002433 UBERON:0000948 ! contributes to morphology of heart property_value: UBPROP:0000008 "'Terrestrial vertebrates have divided hearts in which septae separate the oxygenated and deoxygenated blood within the pulmonary and systemic circulations'" xsd:string [Term] id: UBERON:0002100 name: trunk is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: BFO:0000050 UBERON:0013702 ! part of body proper relationship: BFO:0000051 UBERON:0000915 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! has part thoracic segment of trunk relationship: BFO:0000051 UBERON:0000916 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! has part abdomen property_value: RO:0002171 UBERON:0000033 [Term] id: UBERON:0002101 name: limb is_a: UBERON:0004708 ! paired limb/fin intersection_of: UBERON:0000475 ! organism subdivision intersection_of: RO:0002551 UBERON:0004381 ! has skeleton skeleton of limb relationship: RO:0002160 NCBITaxon:32523 ! only in taxon Tetrapoda relationship: RO:0002202 UBERON:0004347 ! develops from limb bud relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage relationship: RO:0002551 UBERON:0004381 ! has skeleton skeleton of limb [Term] id: UBERON:0002102 name: forelimb is_a: UBERON:0002101 ! limb is_a: UBERON:0004710 ! pectoral appendage intersection_of: UBERON:0002101 ! limb intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex relationship: BFO:0000050 UBERON:0000153 ! part of anterior region of body relationship: BSPO:0000096 UBERON:0002103 ! hindlimb relationship: RO:0002202 UBERON:0005417 ! develops from forelimb bud relationship: RO:0002551 UBERON:0001440 ! has skeleton forelimb skeleton property_value: IAO:0000232 "Note distinction between arm and forelimb. hand is part of forelimb, but not part of arm" xsd:string property_value: RO:0002171 UBERON:0002103 [Term] id: UBERON:0002103 name: hindlimb is_a: UBERON:0002101 ! limb is_a: UBERON:0004709 ! pelvic appendage intersection_of: UBERON:0002101 ! limb intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex relationship: BFO:0000050 UBERON:0000154 ! part of posterior region of body relationship: RO:0002202 UBERON:0005418 ! develops from hindlimb bud relationship: RO:0002551 UBERON:0001441 ! has skeleton hindlimb skeleton property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png" xsd:anyURI property_value: UBPROP:0000007 "crural" xsd:string [Term] id: UBERON:0002104 name: visual system is_a: UBERON:0001032 ! sensory system relationship: RO:0002216 GO:0007601 ! capable of part of visual perception [Term] id: UBERON:0002105 name: vestibulo-auditory system is_a: UBERON:0001032 ! sensory system relationship: RO:0002216 GO:0007605 ! capable of part of sensory perception of sound property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg" xsd:anyURI [Term] id: UBERON:0002106 name: spleen is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0017672 ! abdominal viscera relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata relationship: RO:0002202 UBERON:0006293 ! develops from spleen primordium property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "lienal" xsd:string property_value: UBPROP:0000007 "splenic" xsd:string property_value: UBPROP:0000008 "In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron" xsd:string property_value: UBPROP:0000009 "It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells" xsd:string [Term] id: UBERON:0002107 name: liver is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0006925 ! digestive system gland relationship: BFO:0000050 UBERON:0002423 ! part of hepatobiliary system relationship: BFO:0000051 UBERON:0004647 ! has part liver lobule relationship: RO:0002131 UBERON:0002405 ! overlaps immune system relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002202 UBERON:0004161 ! develops from septum transversum relationship: RO:0002202 UBERON:0008836 ! develops from liver bud relationship: RO:0002433 UBERON:0002423 ! contributes to morphology of hepatobiliary system relationship: RO:0003000 UBERON:0001970 ! produces bile relationship: site_of GO:0002384 ! hepatic immune response relationship: site_of GO:0005978 ! glycogen biosynthetic process relationship: site_of GO:0005980 ! glycogen catabolic process property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "hepatic" xsd:string property_value: UBPROP:0000008 "An organ sometimes referred to as a liver is found associated with the digestive tract of the primitive chordate Amphioxus. However, this is an enzyme secreting gland, not a metabolic organ, and it is unclear how truly homologous it is to the vertebrate liver. The zebrafish liver differs from the mammalian liver in that the hepatocytes are not clearly organized in cords or lobules and the typical portal triads are not apparent. In addition, the zebrafish liver does not have Kuppfer cells. Furthermore, a clear distinction can be made between the male and female liver in the adult zebrafish. The female hepatocytes are very basophilic (Figure 15c) as a result of the production of vitellogenin (Van der Ven et al. 2003)." xsd:string property_value: UBPROP:0000008 "The liver is found in all vertebrates, and is typically the largest visceral organ. Its form varies considerably in different species, and is largely determined by the shape and arrangement of the surrounding organs. Nonetheless, in most species it is divided into right and left lobes; exceptions to this general rule include snakes, where the shape of the body necessitates a simple cigar-like form. The internal structure of the liver is broadly similar in all vertebrates." xsd:string property_value: UBPROP:0000009 "secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]." xsd:string [Term] id: UBERON:0002108 name: small intestine is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0013765 ! digestive system element relationship: BFO:0000050 UBERON:0000160 ! part of intestine relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002433 UBERON:0000160 ! contributes to morphology of intestine property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002110 name: gallbladder comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0017672 ! abdominal viscera is_a: UBERON:0018707 ! bladder organ relationship: BFO:0000050 UBERON:0002294 ! part of biliary system relationship: RO:0002202 UBERON:0004912 ! develops from biliary bud relationship: RO:0002202 UBERON:0006242 ! develops from gallbladder primordium relationship: RO:0002433 UBERON:0001173 ! contributes to morphology of biliary tree property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/b/b1/GallbladderAnatomy-en.svg" xsd:anyURI property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/f/f4/Abdomal_organs.svg" xsd:anyURI [Term] id: UBERON:0002111 name: artery smooth muscle tissue is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001637 ! part of artery relationship: BFO:0000050 UBERON:0001637 ! part of artery [Term] id: UBERON:0002112 name: smooth muscle of esophagus is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0003832 ! part of esophagus muscle relationship: RO:0002433 UBERON:0001043 ! contributes to morphology of esophagus [Term] id: UBERON:0002113 name: kidney is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 UBERON:0011143 ! part of upper urinary tract relationship: BSPO:0000126 UBERON:0000468 ! multicellular organism relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002202 UBERON:0003918 ! develops from kidney mesenchyme relationship: RO:0002202 UBERON:0005095 ! develops from kidney rudiment relationship: RO:0002433 UBERON:0001008 ! contributes to morphology of renal system property_value: RO:0002171 UBERON:0000160 property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "renal" xsd:string property_value: UBPROP:0000202 FMA:264815 [Term] id: UBERON:0002114 name: duodenum is_a: UBERON:0004921 ! subdivision of digestive tract relationship: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BSPO:0001106 UBERON:0002108 ! small intestine relationship: RO:0002150 UBERON:0001166 ! continuous with pylorus relationship: RO:0002433 UBERON:0002108 ! contributes to morphology of small intestine property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "duodenal" xsd:string [Term] id: UBERON:0002118 name: right ovary is_a: UBERON:0000992 ! ovary is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000992 ! ovary intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002119 name: left ovary is_a: UBERON:0000992 ! ovary is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000992 ! ovary intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002120 name: pronephros comment: Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005423 ! developing anatomical structure relationship: RO:0001025 UBERON:0003887 ! located in intraembryonic coelom relationship: RO:0002202 UBERON:0005721 ! develops from pronephric mesoderm relationship: RO:0002202 UBERON:0005754 ! develops from rostral part of nephrogenic cord property_value: UBPROP:0000007 "pronephric" xsd:string [Term] id: UBERON:0002128 name: superior olivary complex is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: BFO:0000050 UBERON:0003023 ! part of pontine tegmentum relationship: BFO:0000050 UBERON:0016490 ! part of auditory system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png" xsd:anyURI property_value: UBPROP:0000008 "In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO:0021718]" xsd:string property_value: UBPROP:0000008 "The SOC displays a significant interspecies variation, being largest in bats and rodents and smaller in primates." xsd:string [Term] id: UBERON:0002148 name: locus ceruleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus is_a: UBERON:8440015 ! noradrenergic cell groups relationship: BFO:0000050 UBERON:0003023 ! part of pontine tegmentum relationship: RO:0002215 GO:0048243 ! capable of norepinephrine secretion property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png" xsd:anyURI property_value: IAO:0000116 "TODO - check ZFA/pons. also GO says part of dorsorostral pons" xsd:string [Term] id: UBERON:0002149 name: superior salivatory nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: BFO:0000050 UBERON:0003023 ! part of pontine tegmentum relationship: RO:0002202 UBERON:0010125 ! develops from future superior salivatory nucleus relationship: RO:0002495 UBERON:0010125 ! immediate transformation of future superior salivatory nucleus property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png" xsd:anyURI [Term] id: UBERON:0002165 name: endocardium comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010 is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0005983 ! heart layer relationship: BFO:0000051 UBERON:0005316 ! has part endocardial endothelium relationship: RO:0002202 UBERON:0007280 ! develops from presumptive endocardium relationship: RO:0002495 UBERON:0007280 ! immediate transformation of presumptive endocardium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png" xsd:anyURI [Term] id: UBERON:0002166 name: endocardium of atrium is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: BFO:0000050 UBERON:0002081 ! part of cardiac atrium relationship: BFO:0000050 UBERON:0002081 ! part of cardiac atrium relationship: RO:0002433 UBERON:0002081 ! contributes to morphology of cardiac atrium [Term] id: UBERON:0002167 name: right lung is_a: UBERON:0002048 ! lung intersection_of: UBERON:0002048 ! lung intersection_of: BSPO:0000121 UBERON:0000170 ! pair of lungs relationship: BSPO:0000121 UBERON:0000170 ! pair of lungs property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png" xsd:anyURI property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002168 name: left lung is_a: UBERON:0002048 ! lung intersection_of: UBERON:0002048 ! lung intersection_of: BSPO:0000120 UBERON:0000170 ! pair of lungs relationship: BSPO:0000120 UBERON:0000170 ! pair of lungs property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/dd/Gray973.png" xsd:anyURI property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002185 name: bronchus is_a: UBERON:0000117 ! respiratory tube relationship: BFO:0000050 UBERON:0007196 ! part of tracheobronchial tree relationship: RO:0001025 UBERON:0002224 ! located in thoracic cavity property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg" xsd:anyURI property_value: UBPROP:0000007 "bronchial" xsd:string property_value: UBPROP:0000008 "In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue" xsd:string [Term] id: UBERON:0002186 name: bronchiole is_a: UBERON:0000117 ! respiratory tube relationship: BFO:0000050 UBERON:0007196 ! part of tracheobronchial tree relationship: BFO:0000050 UBERON:0010368 ! part of pulmonary lobule relationship: RO:0002380 UBERON:0007196 ! branching part of tracheobronchial tree property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: UBPROP:0000007 "bronchiolar" xsd:string [Term] id: UBERON:0002187 name: terminal bronchiole is_a: UBERON:0002186 ! bronchiole property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002190 name: subcutaneous adipose tissue is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001013 ! adipose tissue intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis relationship: BFO:0000050 UBERON:0002072 ! part of hypodermis relationship: RO:0002433 UBERON:0002072 ! contributes to morphology of hypodermis property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002193 name: hemolymphoid system is_a: UBERON:0000467 ! anatomical system relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria [Term] id: UBERON:0002199 name: integument is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0002416 ! part of integumental system relationship: BFO:0000051 UBERON:0002072 ! has part hypodermis relationship: BFO:0000051 UBERON:0002097 ! has part skin of body relationship: RO:0002007 UBERON:0000468 ! bounding layer of multicellular organism relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata property_value: IAO:0000232 "in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates; consider 'integumental system'. Note that the VSAO class appears to include adnexa by its definition." xsd:string property_value: UBPROP:0000007 "integumental" xsd:string property_value: UBPROP:0000007 "integumentary" xsd:string [Term] id: UBERON:0002200 name: vasculature of head is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0002201 name: vasculature of trunk is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0002202 name: submucosa of trachea is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0003126 ! part of trachea property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002203 name: vasculature of eye is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: RO:0002202 UBERON:0003314 ! develops from eye mesenchyme property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002204 name: musculoskeletal system is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: BFO:0000051 UBERON:0000383 ! has part musculature of body relationship: BFO:0000051 UBERON:0001434 ! has part skeletal system relationship: RO:0002216 GO:0040011 ! capable of part of locomotion relationship: RO:0002254 UBERON:0000926 ! has developmental contribution from mesoderm relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: UBPROP:0000007 "musculoskeletal" xsd:string [Term] id: UBERON:0002209 name: fibrous joint is_a: UBERON:0011134 ! nonsynovial joint [Term] id: UBERON:0002213 name: cartilaginous joint is_a: UBERON:0011134 ! nonsynovial joint intersection_of: UBERON:0011134 ! nonsynovial joint intersection_of: RO:0002473 UBERON:0002418 ! composed primarily of cartilage tissue relationship: RO:0002473 UBERON:0002418 ! composed primarily of cartilage tissue [Term] id: UBERON:0002215 name: synchondrosis is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint intersection_of: UBERON:0002209 ! fibrous joint intersection_of: RO:0002473 UBERON:0001994 ! composed primarily of hyaline cartilage tissue relationship: RO:0002473 UBERON:0001994 ! composed primarily of hyaline cartilage tissue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray297.png" xsd:anyURI property_value: IAO:0000116 "consider adding link to hyaline cartilage" xsd:string property_value: IAO:0000116 "WP considers epiphyseal plates as subtypes of this" xsd:string [Term] id: UBERON:0002216 name: symphysis is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray298.png" xsd:anyURI property_value: IAO:0000116 "consider adding fibrocartilage class" xsd:string [Term] id: UBERON:0002217 name: synovial joint is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: RO:0002219 UBERON:0001484 ! surrounded by articular capsule disjoint_from: UBERON:0011134 ! nonsynovial joint relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002219 UBERON:0001484 ! surrounded by articular capsule [Term] id: UBERON:0002224 name: thoracic cavity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: BFO:0000050 UBERON:0002323 ! part of coelemic cavity lumen intersection_of: RO:0002572 UBERON:0000915 ! luminal space of thoracic segment of trunk relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0002323 ! part of coelemic cavity lumen relationship: RO:0002572 UBERON:0000915 ! luminal space of thoracic segment of trunk property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray846.png" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg" xsd:anyURI property_value: UBPROP:0000008 "In many species, the diaphragm separates thoracic and abdominal cavities" xsd:string [Term] id: UBERON:0002240 name: spinal cord is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: RO:0002202 UBERON:0003076 ! develops from posterior neural tube relationship: RO:0002202 UBERON:0006241 ! develops from future spinal cord relationship: RO:0002254 UBERON:0003853 ! has developmental contribution from spinal cord neural crest relationship: RO:0002495 UBERON:0006241 ! immediate transformation of future spinal cord property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg" xsd:anyURI property_value: IAO:0000116 "TODO - add superclass to unify with VNC?" xsd:string [Term] id: UBERON:0002241 name: chondrocranium is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system relationship: RO:0002131 UBERON:0001703 ! overlaps neurocranium property_value: IAO:0000116 "we follow the standard evolutionary classification and treat this as endoskeletal. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes parts of the dermatocranium (e.g. frontal, parietal)" xsd:string property_value: UBPROP:0000007 "chondrocranial" xsd:string property_value: UBPROP:0000008 "covers the brain dorsally in chondrichthyans" xsd:string [Term] id: UBERON:0002268 name: olfactory organ is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: RO:0002215 GO:0050911 ! capable of detection of chemical stimulus involved in sensory perception of smell relationship: RO:0002131 UBERON:0005725 ! overlaps olfactory system relationship: RO:0002215 GO:0050911 ! capable of detection of chemical stimulus involved in sensory perception of smell property_value: IAO:0000116 "An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint" xsd:string property_value: UBPROP:0000012 "fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint" xsd:string [Term] id: UBERON:0002275 name: reticular formation is_a: UBERON:0002616 ! regional part of brain relationship: BFO:0000050 UBERON:0002298 ! part of brainstem property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png" xsd:anyURI property_value: IAO:0000232 "this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation." xsd:string property_value: UBPROP:0000008 "It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain." xsd:string [Term] id: UBERON:0002294 name: biliary system is_a: UBERON:0011216 ! organ system subdivision intersection_of: UBERON:0011216 ! organ system subdivision intersection_of: BFO:0000051 UBERON:0001173 ! has part biliary tree intersection_of: RO:0002215 GO:0006699 ! capable of bile acid biosynthetic process intersection_of: RO:0002215 GO:0015721 ! capable of bile acid and bile salt transport disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: BFO:0000050 UBERON:0002423 ! part of hepatobiliary system relationship: BFO:0000051 UBERON:0001173 ! has part biliary tree relationship: RO:0002215 GO:0006699 ! capable of bile acid biosynthetic process relationship: RO:0002215 GO:0015721 ! capable of bile acid and bile salt transport property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png" xsd:anyURI property_value: RO:0002171 UBERON:0016478 [Term] id: UBERON:0002296 name: dorsal mesentery is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000050 UBERON:0009664 ! part of gut mesentery relationship: RO:0002387 UBERON:0002095 ! has potential to develop into mesentery property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/85/Gray985.png" xsd:anyURI [Term] id: UBERON:0002298 name: brainstem comment: 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). is_a: UBERON:0002616 ! regional part of brain relationship: BFO:0000051 UBERON:0001896 ! has part medulla oblongata relationship: BFO:0000051 UBERON:0001943 ! has part midbrain tegmentum relationship: RO:0002150 UBERON:0002240 ! continuous with spinal cord relationship: RO:0002433 UBERON:0000955 ! contributes to morphology of brain property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png" xsd:anyURI [Term] id: UBERON:0002302 name: myocardium of atrium is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: BFO:0000050 UBERON:0002081 ! part of cardiac atrium relationship: BFO:0000050 UBERON:0002081 ! part of cardiac atrium relationship: RO:0002433 UBERON:0002081 ! contributes to morphology of cardiac atrium [Term] id: UBERON:0002308 name: nucleus of brain is_a: UBERON:0000125 ! neural nucleus intersection_of: UBERON:0000125 ! neural nucleus intersection_of: BFO:0000050 UBERON:0000955 ! part of brain relationship: BFO:0000050 UBERON:0003528 ! part of brain gray matter [Term] id: UBERON:0002315 name: gray matter of spinal cord is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord relationship: RO:0002433 UBERON:0002240 ! contributes to morphology of spinal cord [Term] id: UBERON:0002323 name: coelemic cavity lumen is_a: UBERON:0002553 ! anatomical cavity relationship: BFO:0000050 UBERON:0011997 ! part of coelom relationship: RO:0002202 UBERON:0003886 ! develops from future coelemic cavity lumen relationship: RO:0002494 UBERON:0003886 ! transformation of future coelemic cavity lumen relationship: RO:0002572 UBERON:0011997 ! luminal space of coelom property_value: IAO:0000116 "check the FMA placement here; ncit placement of body cavity here probably not correct" xsd:string property_value: UBPROP:0000008 "In mammals it forms the peritoneal, pleural, and pericardial cavities" xsd:string [Term] id: UBERON:0002324 name: muscle of back is_a: UBERON:0001774 ! skeletal muscle of trunk is_a: UBERON:0005174 ! dorsal region element intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum relationship: BFO:0000050 UBERON:0004469 ! part of musculature of back [Term] id: UBERON:0002325 name: epithelium of urethra is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006555 ! excretory tube is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0002326 name: lamina propria of urethra is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0002328 name: notochord comment: The notochord appears early in embryogeny and plays an important role in promoting or organizing the embryonic development of nearby structures. In most adult chordates the notochord disappears or becomes highly modified. In some non-vertebrate chordates and fishes the notochord persists as a laterally flexible but incompressible skeletal rod that prevents telescopic collapse of the body during swimming[TOLWEB] is_a: UBERON:0000062 ! organ is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0000922 {gci_filler="NCBITaxon:40674", gci_relation="BFO:0000050"} ! part of embryo relationship: BFO:0000050 UBERON:0011137 ! part of axial skeletal system relationship: BSPO:0000098 UBERON:0001555 ! digestive tract relationship: BSPO:0000102 UBERON:0001049 ! neural tube relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002202 UBERON:0004880 ! develops from chordamesoderm relationship: RO:0002202 UBERON:0006267 ! develops from notochordal plate relationship: RO:0002488 UBERON:0000068 ! existence starts during embryo stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI property_value: UBPROP:0000007 "notochordal" xsd:string property_value: UBPROP:0000011 "In between vertebra the notochord becomes the nucleus pulposus, under it degenerates, and at anterior end in some species its tissue merges with some of the cranial bones.. Some organisms retain a post-embryonic notochord." xsd:string [Term] id: UBERON:0002329 name: somite comment: When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248] is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0007503 ! epithelial vesicle relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002202 UBERON:0003059 ! develops from presomitic mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI property_value: IAO:0000116 "currently classified as an epithelial vesicle, consistent with EHDAA2 and https://github.com/obophenotype/uberon/wiki/The-neural-crest. Consider making 'somitic mesoderm' a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk" xsd:string property_value: UBPROP:0000007 "somitic" xsd:string [Term] id: UBERON:0002330 name: exocrine system is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002473 UBERON:0002365 ! composed primarily of exocrine gland relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage [Term] id: UBERON:0002333 name: pulmonary trunk is_a: UBERON:0001637 ! artery relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0008886 ! part of pulmonary vascular system relationship: RO:0002150 UBERON:0000948 ! continuous with heart relationship: RO:0002150 UBERON:0002080 {gci_filler="NCBITaxon:40674", gci_relation="BFO:0000050"} ! continuous with heart right ventricle relationship: RO:0002170 UBERON:0002080 ! connected to heart right ventricle property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002338 name: lamina propria of bronchus is_a: UBERON:0000031 ! lamina propria of trachea is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0000410 ! part of bronchial mucosa [Term] id: UBERON:0002342 name: neural crest comment: Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells. is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010316 ! germ layer / neural crest relationship: BFO:0000050 UBERON:0002346 ! part of neurectoderm relationship: RO:0002160 NCBITaxon:89593 ! only in taxon Craniata relationship: RO:0002202 UBERON:0003075 ! develops from neural plate relationship: RO:0002202 UBERON:0005062 ! develops from neural fold relationship: RO:0002488 UBERON:0000110 ! existence starts during neurula stage property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray644.png" xsd:anyURI property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png" xsd:anyURI property_value: IAO:0000116 "consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams)." xsd:string [Term] id: UBERON:0002343 name: abdomen musculature is_a: UBERON:0004479 ! musculature of trunk intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0000916 ! part of abdomen property_value: IAO:0000232 "distinction between abdomen muscle and abdomen musculature" xsd:string [Term] id: UBERON:0002345 name: descending thoracic aorta is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: BFO:0000050 UBERON:0001514 ! part of descending aorta relationship: BFO:0000050 UBERON:0001515 ! part of thoracic aorta relationship: RO:0002433 UBERON:0001514 ! contributes to morphology of descending aorta relationship: RO:0002433 UBERON:0001515 ! contributes to morphology of thoracic aorta property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002346 name: neurectoderm is_a: UBERON:0000923 ! germ layer is_a: UBERON:0004121 ! ectoderm-derived structure property_value: UBPROP:0000007 "neurectodermal" xsd:string property_value: UBPROP:0000013 "we prefer neurectoderm to neural ectoderm since placodal ectoderm is not classified here" xsd:string [Term] id: UBERON:0002348 name: epicardium is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0002425 ! part of visceral serous pericardium relationship: RO:0002202 UBERON:0004160 ! develops from proepicardium relationship: RO:0002371 UBERON:0002349 ! attached to myocardium property_value: IAO:0000116 "TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer." xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000009 "The visceral pericardium apparently produces the pericardial fluid, which lubricates motion between the inner and outer layers of the pericardium. During ventricular contraction, the wave of depolarization moves from endocardial to epicardial surface. [Wikipedia:Epicardium]" xsd:string [Term] id: UBERON:0002349 name: myocardium is_a: UBERON:0005983 ! heart layer is_a: UBERON:0018260 ! layer of muscle tissue intersection_of: UBERON:0005983 ! heart layer intersection_of: RO:0002473 UBERON:0001133 ! composed primarily of cardiac muscle tissue relationship: BFO:0000050 UBERON:0000383 ! part of musculature of body relationship: BFO:0000051 UBERON:0002350 ! has part conducting system of heart relationship: RO:0002473 UBERON:0001133 ! composed primarily of cardiac muscle tissue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6e/Glanzstreifen.jpg" xsd:anyURI property_value: IAO:0000116 "TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium" xsd:string property_value: UBPROP:0000007 "myocardial" xsd:string [Term] id: UBERON:0002350 name: conducting system of heart is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 ! conducting tissue of heart relationship: RO:0002433 UBERON:0000948 ! contributes to morphology of heart property_value: IAO:0000116 "EHDAA2 divides the system from the tissue" xsd:string [Term] id: UBERON:0002355 name: pelvic region of trunk is_a: UBERON:0000475 ! organism subdivision relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: BFO:0000051 UBERON:0007832 ! has part pelvic girdle skeleton property_value: UBPROP:0000007 "pelvic" xsd:string [Term] id: UBERON:0002357 name: serous pericardium is_a: UBERON:0000042 ! serous membrane relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0002406 ! part of pericardial sac relationship: BFO:0000051 UBERON:0002408 ! has part parietal serous pericardium relationship: BFO:0000051 UBERON:0002425 ! has part visceral serous pericardium relationship: RO:0002371 UBERON:0002359 ! attached to fibrous pericardium [Term] id: UBERON:0002358 name: peritoneum is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0035820 ! part of peritoneal sac relationship: BFO:0000050 UBERON:0003697 ! part of abdominal wall relationship: BFO:0000050 UBERON:0035820 ! part of peritoneal sac property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png" xsd:anyURI property_value: IAO:0000116 "TODO - in ZFA is_a epithelium" xsd:string property_value: UBPROP:0000007 "peritoneal" xsd:string [Term] id: UBERON:0002359 name: fibrous pericardium is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0005181 ! thoracic segment organ relationship: BFO:0000050 UBERON:0002407 ! part of pericardium relationship: RO:0002150 UBERON:0002408 ! continuous with parietal serous pericardium relationship: RO:0002473 UBERON:0006815 ! composed primarily of areolar connective tissue property_value: UBPROP:0000010 "most superficial part of pericardium; continuous with the outer adventitial layer of the neighboring great blood vessels. [Wikipedia:Pericardium]" xsd:string [Term] id: UBERON:0002360 name: meninx is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0010743 ! part of meningeal cluster relationship: RO:0002202 UBERON:0007645 ! develops from future meninx relationship: RO:0002495 UBERON:0007645 ! immediate transformation of future meninx property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/4/48/Illu_meninges.jpg" xsd:anyURI property_value: UBPROP:0000007 "meningeal" xsd:string property_value: UBPROP:0000008 "Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx)." xsd:string property_value: UBPROP:0000202 FMA:76821 [Term] id: UBERON:0002363 name: dura mater is_a: UBERON:0002360 ! meninx relationship: RO:0002150 UBERON:0001773 ! continuous with sclera relationship: RO:0002202 UBERON:0007647 ! develops from ectomeninx relationship: RO:0002495 UBERON:0007647 ! immediate transformation of ectomeninx property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/8e/Meninges-en.svg" xsd:anyURI property_value: UBPROP:0000009 "capable of inducing chondrogenesis - requires contact with an epithelium - http://www.ncbi.nlm.nih.gov/pubmed/16496288" xsd:string property_value: UBPROP:0000012 "some ontologies consider dura mater part of the CNS, others dispute this and claim it surrounds it (e.g. DOI:10.1111/joa.12381)[https://github.com/obophenotype/uberon/issues/1261]" xsd:string [Term] id: UBERON:0002365 name: exocrine gland is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0002330 ! part of exocrine system relationship: BFO:0000050 UBERON:0002330 ! part of exocrine system relationship: BFO:0000051 UBERON:0000058 ! has part duct property_value: IAO:0000116 "Currently this is logically defined by the system it belongs to, but a better system may be base this on presence/absence of ducts. However, the dual nature of the liver should be taken into consideration here. Consider adding subclasses" xsd:string [Term] id: UBERON:0002368 name: endocrine gland is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0000949 ! part of endocrine system relationship: BFO:0000050 UBERON:0000949 ! part of endocrine system relationship: RO:0002215 GO:0046879 ! capable of hormone secretion property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/da/Illu_endocrine_system.png" xsd:anyURI [Term] id: UBERON:0002376 name: cranial muscle comment: defined generically so could in theory encompass FBbt:00003260 'skeletal muscle of head', or the muscle of a starfish Aristotle's lantern, but we restrict this to craniates. Skeletal muscles of the head originate from the non-segmented head mesoderm (Noden, 1983; Wachtler et al., 1984) is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010959 ! craniocervical muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0000033 ! part of head intersection_of: RO:0002371 UBERON:0003129 ! attached to skull relationship: BFO:0000050 UBERON:0004461 ! part of skeletal musculature of head relationship: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: RO:0002371 UBERON:0003129 ! attached to skull [Term] id: UBERON:0002377 name: muscle of neck is_a: UBERON:0010959 ! craniocervical muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0000974 ! part of neck relationship: BFO:0000050 UBERON:0004465 ! part of musculature of neck [Term] id: UBERON:0002378 name: muscle of abdomen is_a: UBERON:0003833 ! abdominal segment muscle is_a: UBERON:0005172 ! abdomen element intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0002343 ! part of abdomen musculature relationship: BFO:0000050 UBERON:0003697 ! part of abdominal wall [Term] id: UBERON:0002384 name: connective tissue is_a: UBERON:0000479 ! tissue relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002385 name: muscle tissue comment: Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure disjoint_from: UBERON:0003714 ! neural tissue relationship: BFO:0000050 UBERON:0001015 ! part of musculature relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002215 GO:0006936 ! capable of muscle contraction property_value: RO:0002171 UBERON:0003714 [Term] id: UBERON:0002390 name: hematopoietic system is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! mesoderm-derived structure disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002202 UBERON:0003061 ! develops from blood island property_value: UBPROP:0000007 "hematopoietic" xsd:string [Term] id: UBERON:0002394 name: bile duct is_a: UBERON:0000025 ! tube is_a: UBERON:0003928 ! digestive system duct is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: BFO:0000050 UBERON:0001173 ! part of biliary tree relationship: BFO:0000050 UBERON:0001173 ! part of biliary tree relationship: channel_for UBERON:0001970 ! bile relationship: RO:0002202 UBERON:0008835 ! develops from hepatic diverticulum relationship: RO:0002433 UBERON:0001173 ! contributes to morphology of biliary tree property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png" xsd:anyURI [Term] id: UBERON:0002405 name: immune system is_a: UBERON:0015203 ! non-connected functional system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: protects UBERON:0000468 ! multicellular organism relationship: RO:0002215 GO:0002376 ! capable of immune system process relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002406 name: pericardial sac is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005906 ! serous sac intersection_of: UBERON:0005906 ! serous sac intersection_of: BFO:0000051 UBERON:0001074 ! has part pericardial cavity intersection_of: BFO:0000051 UBERON:0002357 ! has part serous pericardium relationship: BFO:0000050 UBERON:0002407 ! part of pericardium relationship: BFO:0000051 UBERON:0001074 ! has part pericardial cavity relationship: BFO:0000051 UBERON:0002357 ! has part serous pericardium relationship: RO:0002219 UBERON:0002359 ! surrounded by fibrous pericardium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png" xsd:anyURI [Term] id: UBERON:0002407 name: pericardium is_a: UBERON:0000481 ! multi-tissue structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0015410 ! part of heart plus pericardium relationship: BFO:0000051 UBERON:0002359 ! has part fibrous pericardium relationship: BFO:0000051 UBERON:0002406 ! has part pericardial sac relationship: RO:0002221 UBERON:0002349 ! surrounds myocardium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png" xsd:anyURI property_value: UBPROP:0000007 "pericardial" xsd:string [Term] id: UBERON:0002408 name: parietal serous pericardium is_a: UBERON:0022351 ! parietal serous membrane intersection_of: UBERON:0022351 ! parietal serous membrane intersection_of: BFO:0000050 UBERON:0002357 ! part of serous pericardium relationship: BFO:0000050 UBERON:0002357 ! part of serous pericardium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png" xsd:anyURI [Term] id: UBERON:0002409 name: pericardial fluid is_a: UBERON:0007794 ! secretion of serous gland is_a: UBERON:0036217 ! coelomic fluid intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0003001 UBERON:0002425 ! produced by visceral serous pericardium relationship: RO:0001025 UBERON:0001074 ! located in pericardial cavity relationship: RO:0003001 UBERON:0002425 ! produced by visceral serous pericardium [Term] id: UBERON:0002410 name: autonomic nervous system is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002433 UBERON:0001016 ! contributes to morphology of nervous system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png" xsd:anyURI [Term] id: UBERON:0002416 name: integumental system is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: BFO:0000051 UBERON:0007376 ! has part outer epithelium relationship: RO:0002007 UBERON:0000468 ! bounding layer of multicellular organism relationship: RO:0002219 UBERON:0013514 ! surrounded by space surrounding organism relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage [Term] id: UBERON:0002417 name: abdominal segment of trunk is_a: UBERON:0009569 ! subdivision of trunk is_a: UBERON:0011676 ! subdivision of organism along main body axis [Term] id: UBERON:0002418 name: cartilage tissue comment: Previous: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." See also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W] is_a: UBERON:0004755 ! skeletal tissue relationship: BFO:0000051 CHEBI:18085 ! has part glycosaminoglycan relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria relationship: RO:0002433 UBERON:0001434 ! contributes to morphology of skeletal system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg" xsd:anyURI [Term] id: UBERON:0002419 name: skin gland is_a: UBERON:0003297 ! gland of integumental system is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006003 ! integumentary adnexa intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0002097 ! part of skin of body relationship: BFO:0000050 UBERON:0002097 ! part of skin of body property_value: IAO:0000116 "check FMA, use plural for now as general class not there" xsd:string [Term] id: UBERON:0002423 name: hepatobiliary system is_a: UBERON:0011216 ! organ system subdivision disjoint_from: UBERON:0004456 ! entire sense organ system disjoint_from: UBERON:8450002 ! excretory system relationship: BFO:0000050 UBERON:0001007 ! part of digestive system relationship: BFO:0000051 UBERON:0002107 ! has part liver relationship: BFO:0000051 UBERON:0002294 ! has part biliary system relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002215 GO:0061007 ! capable of hepaticobiliary system process relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: UBPROP:0000009 "The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct [GO:0061008]" xsd:string [Term] id: UBERON:0002424 name: oral epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0003729 ! part of mouth mucosa relationship: BFO:0000050 UBERON:0003729 ! part of mouth mucosa relationship: RO:0002220 UBERON:0000167 ! adjacent to oral cavity property_value: IAO:0000116 "consider including separate class for developmental structure (adult human is stratified; in EHDAA2 is unilaminar)" xsd:string [Term] id: UBERON:0002425 name: visceral serous pericardium is_a: UBERON:0022350 ! visceral serous membrane intersection_of: UBERON:0022350 ! visceral serous membrane intersection_of: BFO:0000050 UBERON:0002357 ! part of serous pericardium relationship: BFO:0000050 UBERON:0002357 ! part of serous pericardium relationship: BFO:0000051 UBERON:0002348 ! has part epicardium relationship: RO:0002371 UBERON:0002349 ! attached to myocardium relationship: RO:0002433 UBERON:0002407 ! contributes to morphology of pericardium [Term] id: UBERON:0002428 name: limb bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004375 ! bone of free limb or fin is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: RO:0002202 UBERON:0010881 ! develops from limb cartilage element property_value: IAO:0000232 "the formal definition is very inclusive, and includes sesamoids" xsd:string [Term] id: UBERON:0002443 name: choroidal blood vessel comment: cannot find singular in FMA, using Set class is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0001776 ! part of optic choroid relationship: BFO:0000050 UBERON:0001776 ! part of optic choroid [Term] id: UBERON:0002457 name: intersomitic artery is_a: UBERON:0001637 ! artery is_a: UBERON:0014907 ! intersomitic vessel [Term] id: UBERON:0002458 name: spinal artery is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0002240 ! supplies spinal cord relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0002240 ! supplies spinal cord [Term] id: UBERON:0002460 name: vesical vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001255 ! drains urinary bladder relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0001255 ! drains urinary bladder relationship: RO:0002376 UBERON:0001317 ! tributary of internal iliac vein property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000202 FMA:70911 [Term] id: UBERON:0002466 name: intestine secretion is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: RO:0003001 UBERON:0000160 ! produced by intestine relationship: RO:0003001 UBERON:0000160 ! produced by intestine [Term] id: UBERON:0002469 name: esophagus mucosa is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus [Term] id: UBERON:0002481 name: bone tissue is_a: UBERON:0004755 ! skeletal tissue disjoint_from: UBERON:0005090 ! muscle structure relationship: BFO:0000050 UBERON:0001474 ! part of bone element relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata property_value: IAO:0000116 "see https://github.com/obophenotype/uberon/issues/27" xsd:string [Term] id: UBERON:0002506 name: iris epithelium is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001769 ! part of iris relationship: BFO:0000050 UBERON:0001769 ! part of iris relationship: BFO:0000051 GO:0048770 ! has part pigment granule relationship: RO:0002433 UBERON:0001769 ! contributes to morphology of iris property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0002513 name: endochondral bone is_a: UBERON:0001474 ! bone element is_a: UBERON:0010363 ! endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: RO:0002202 UBERON:0005863 ! develops from cartilaginous condensation relationship: RO:0002202 UBERON:0007844 ! develops from cartilage element relationship: RO:0002285 UBERON:0002418 ! developmentally replaces cartilage tissue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg" xsd:anyURI property_value: IAO:0000116 "placement in this class to be inferred" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern" xsd:anyURI [Term] id: UBERON:0002514 name: intramembranous bone is_a: UBERON:0001474 ! bone element relationship: RO:0002202 UBERON:0003104 ! develops from mesenchyme relationship: RO:0002353 GO:0001957 ! output of intramembranous ossification [Term] id: UBERON:0002521 name: elastic tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: RO:0002473 GO:0071953 ! composed primarily of elastic fiber relationship: RO:0000086 PATO:0001171 ! has quality elastic relationship: RO:0002473 GO:0071953 ! composed primarily of elastic fiber property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray377.png" xsd:anyURI [Term] id: UBERON:0002522 name: tunica media comment: May be composed of smooth muscle and elastic tissue is_a: UBERON:0004797 ! blood vessel layer relationship: BFO:0000051 UBERON:0002521 ! has part elastic tissue relationship: BFO:0000051 UBERON:0004237 ! has part blood vessel smooth muscle relationship: RO:0002219 UBERON:0005734 ! surrounded by tunica adventitia of blood vessel property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg" xsd:anyURI [Term] id: UBERON:0002523 name: tunica intima is_a: UBERON:0004923 ! organ component layer relationship: BFO:0000051 UBERON:0001986 ! has part endothelium relationship: RO:0002219 UBERON:0002522 ! surrounded by tunica media relationship: RO:0002220 UBERON:0010161 ! adjacent to lumen of blood vessel property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg" xsd:anyURI property_value: IAO:0000116 "the FMA class represents a more generic layer which is the superclass of the layer found in both blood vessels and lymph vessels (and also endocardium) - we should probably follow this structure" xsd:string property_value: IAO:0000116 "the FMA class represents a structure which may have both epithelium and fibroelastic connective tissue as parts" xsd:string [Term] id: UBERON:0002530 name: gland is_a: UBERON:0000062 ! organ relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002215 GO:0046903 ! capable of secretion relationship: RO:0003000 UBERON:0000463 ! produces organism substance property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1026.png" xsd:anyURI property_value: RO:0002171 UBERON:0001434 property_value: UBPROP:0000007 "glandular" xsd:string [Term] id: UBERON:0002532 name: epiblast (generic) is_a: UBERON:0002050 ! embryonic structure property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png" xsd:anyURI property_value: IAO:0000116 "MP says - tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper. In HOG, epiblast is part of primitive streak/blastpore, which is inconsistent with the MP definition of primitive streak as a ridge of the epiblast. Note that these terms, epiblast and hypoblast, are also used to describe layers of the avian embryonic blastoderm, but the layers so-named seem to be altogether different in these two kinds of vertebrate embryos(CVS). Consider obsoleting this as a grouping class" xsd:string [Term] id: UBERON:0002536 name: arthropod sensillum is_a: UBERON:0000020 ! sense organ relationship: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0002539 name: pharyngeal arch is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0010188 ! protuberance is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0008814 ! part of pharyngeal arch system relationship: BFO:0000050 UBERON:0008816 ! part of embryonic head relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002256 UBERON:0007690 ! developmentally induced by early pharyngeal endoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png" xsd:anyURI property_value: UBPROP:0000013 "Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering" xsd:string [Term] id: UBERON:0002546 name: cranial placode is_a: UBERON:0005085 ! ectodermal placode relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata property_value: IAO:0000116 "Do not merge with neurogenic placode" xsd:string property_value: UBPROP:0000013 "The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. to avoid confusion, we include neurogenic placode as a subclass" xsd:string [Term] id: UBERON:0002548 name: larva is_a: UBERON:0000468 ! multicellular organism intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002491 UBERON:0000069 ! existence starts and ends during larval stage relationship: RO:0000086 PATO:0001185 ! has quality larval relationship: RO:0002491 UBERON:0000069 ! existence starts and ends during larval stage property_value: IAO:0000116 "TODO discriminate between stages and organisms" xsd:string property_value: UBPROP:0000007 "larval" xsd:string [Term] id: UBERON:0002553 name: anatomical cavity is_a: UBERON:0000464 ! anatomical space relationship: RO:0001015 UBERON:0000463 ! location of organism substance [Term] id: UBERON:0002558 name: organ cavity is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0002561 name: lumen of central nervous system is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity intersection_of: RO:0002572 UBERON:0001017 ! luminal space of central nervous system relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: RO:0002572 UBERON:0001017 ! luminal space of central nervous system [Term] id: UBERON:0002616 name: regional part of brain is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: BFO:0000050 UBERON:0000955 ! part of brain relationship: BFO:0000050 UBERON:0000955 ! part of brain relationship: RO:0002473 UBERON:0003714 ! composed primarily of neural tissue [Term] id: UBERON:0002871 name: hypoglossal nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata intersection_of: UBERON:0000126 ! cranial nerve nucleus intersection_of: extends_fibers_into UBERON:0001650 ! hypoglossal nerve relationship: extends_fibers_into UBERON:0001650 ! hypoglossal nerve property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png" xsd:anyURI [Term] id: UBERON:0002925 name: trigeminal nucleus is_a: UBERON:0000126 ! cranial nerve nucleus intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: BFO:0000050 UBERON:0007641 ! part of trigeminal nuclear complex relationship: BFO:0000050 UBERON:0007641 ! part of trigeminal nuclear complex relationship: extends_fibers_into UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0002926 name: gustatory epithelium is_a: UBERON:0006934 ! sensory epithelium intersection_of: UBERON:0006934 ! sensory epithelium intersection_of: BFO:0000050 UBERON:0001033 ! part of gustatory system relationship: BFO:0000050 UBERON:0000012 ! part of somatic nervous system relationship: BFO:0000050 UBERON:0001033 ! part of gustatory system relationship: BFO:0000050 UBERON:0001723 {gci_filler="NCBITaxon:9606", gci_relation="BFO:0000050"} ! part of tongue [Term] id: UBERON:0003023 name: pontine tegmentum is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0000988 ! part of pons relationship: BFO:0000051 UBERON:0002047 ! has part pontine raphe nucleus relationship: BFO:0000051 UBERON:0002128 ! has part superior olivary complex relationship: BFO:0000051 UBERON:0002148 ! has part locus ceruleus relationship: BFO:0000051 UBERON:0002149 ! has part superior salivatory nucleus property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000009 "involved in the initiation of REM sleep [Wikipedia:Pontine_tegmentum]" xsd:string [Term] id: UBERON:0003037 name: septum comment: general anatomical term in FMA is_a: UBERON:0000061 ! anatomical structure relationship: RO:0001025 UBERON:0002553 ! located in anatomical cavity property_value: UBPROP:0000007 "septal" xsd:string [Term] id: UBERON:0003052 name: midbrain-hindbrain boundary is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002131 UBERON:0001891 ! overlaps midbrain intersection_of: RO:0002131 UBERON:0002028 ! overlaps hindbrain relationship: BFO:0000050 UBERON:0000955 ! part of brain relationship: RO:0002131 UBERON:0001891 ! overlaps midbrain relationship: RO:0002131 UBERON:0002028 ! overlaps hindbrain relationship: RO:0002202 UBERON:0009615 ! develops from midbrain hindbrain boundary neural plate relationship: RO:0002495 UBERON:0009615 ! immediate transformation of midbrain hindbrain boundary neural plate property_value: IAO:0000116 "consider adding class for organizer. Consider adding separate class for isthmus as a structure" xsd:string [Term] id: UBERON:0003055 name: periderm is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0010371 ! ecto-epithelium relationship: BFO:0000050 UBERON:0002199 ! part of integument relationship: RO:0002202 UBERON:0007383 ! develops from enveloping layer of ectoderm property_value: UBPROP:0000008 "In mice, the first non-basal layer formed at ~E9.5; it is a temporary structure composed of simple squamous epithelium that serves as the first barrier to the embryo's physical environment, exists throughout the entire keratinocyte stratification process, and sheds off at ~E17, when it is replaced by corneocytes[MP]" xsd:string property_value: UBPROP:0000011 "In some mammals, Eyelid Fusion is thought to be driven by a population of cells which are derived from the periderm, the outermost layer of the developing epidermis" xsd:string property_value: UBPROP:0000011 "Originally the epidermis is one layer thick, in most vertebrates it soon becomes a two-layered structure. The outer layer gives rise to the periderm. The periderm goes through distinct developmental phases and is ultimately sloughed into the amniotic fluid when differentiation of the underlying epidermal layers is complete. The function of the periderm is not known, but is thought to be related to transport/exchange between the fetus and the amniotic fluid (http://courses.washington.edu/hubio567/devbio/periderm.html)" xsd:string [Term] id: UBERON:0003056 name: pre-chordal neural plate is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0003075 ! part of neural plate relationship: BSPO:0000096 UBERON:0009615 ! midbrain hindbrain boundary neural plate [Term] id: UBERON:0003057 name: chordal neural plate is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0003075 ! part of neural plate relationship: BSPO:0000099 UBERON:0009615 ! midbrain hindbrain boundary neural plate [Term] id: UBERON:0003059 name: presomitic mesoderm is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: RO:0002387 UBERON:0002329 ! has potential to develop into somite intersection_of: RO:0002495 UBERON:0007282 ! immediate transformation of presumptive segmental plate relationship: BFO:0000050 UBERON:0003077 ! part of paraxial mesoderm relationship: RO:0002202 UBERON:0007282 ! develops from presumptive segmental plate relationship: RO:0002387 UBERON:0002329 ! has potential to develop into somite relationship: RO:0002495 UBERON:0007282 ! immediate transformation of presumptive segmental plate [Term] id: UBERON:0003060 name: pronephric duct comment: The pronephric duct collects the filtrate from the pronephric tubules and opens to the exterior of the pronephric kidney[GOC:mtg_kidney_jan10, PMID:15647339, XAO:0000063, ZFA:0000150] is_a: UBERON:0009201 ! nephric duct is_a: UBERON:0012275 ! meso-epithelium relationship: BFO:0000050 UBERON:0002120 ! part of pronephros relationship: RO:0002202 UBERON:0003064 ! develops from intermediate mesoderm relationship: RO:0002202 UBERON:0005721 ! develops from pronephric mesoderm [Term] id: UBERON:0003061 name: blood island is_a: UBERON:0006598 ! presumptive structure relationship: RO:0002202 UBERON:0003081 ! develops from lateral plate mesoderm relationship: RO:0002387 UBERON:0002390 ! has potential to develop into hematopoietic system [Term] id: UBERON:0003063 name: prechordal plate is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0003068 ! part of axial mesoderm relationship: RO:0002202 UBERON:0034878 ! develops from prechordal mesoderm relationship: RO:0002494 UBERON:0034878 ! transformation of prechordal mesoderm property_value: IAO:0000116 "TODO - check; developmental relationship to anterior hypoblast in ZFA?" xsd:string [Term] id: UBERON:0003064 name: intermediate mesoderm is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm relationship: BFO:0000050 UBERON:0005256 ! part of trunk mesenchyme relationship: RO:0002202 UBERON:0000926 ! develops from mesoderm relationship: RO:0002220 UBERON:0003077 ! adjacent to paraxial mesoderm relationship: RO:0002220 UBERON:0003081 ! adjacent to lateral plate mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI [Term] id: UBERON:0003066 name: pharyngeal arch 2 is_a: UBERON:0002539 ! pharyngeal arch property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png" xsd:anyURI property_value: UBPROP:0000103 "2" xsd:nonNegativeInteger [Term] id: UBERON:0003067 name: dorsolateral placode comment: The only remaining dorsolateral placode in land vertebrates is the otic/octaval placode is_a: UBERON:0009955 ! neurogenic placode relationship: BSPO:0000098 UBERON:0003078 ! epibranchial placode [Term] id: UBERON:0003068 name: axial mesoderm is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002202 UBERON:0000926 ! develops from mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI [Term] id: UBERON:0003070 name: trigeminal placode complex is_a: UBERON:0003067 ! dorsolateral placode relationship: RO:0002385 UBERON:0003942 ! has potential to developmentally contribute to somatosensory system property_value: UBPROP:0000013 "Consider naming this 'trigeminal placode complex'. Also, Fig9-5 of ISBN:0471888893 calls this the profundus placode; XAO says 'profundal and the trigeminal ganglia are separate distally but fused at their proximal end...'" xsd:string [Term] id: UBERON:0003071 name: eye primordium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0001048 ! primordium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0001048 ! primordium intersection_of: RO:0002387 UBERON:0000019 ! has potential to develop into camera-type eye relationship: BFO:0000050 UBERON:0003056 ! part of pre-chordal neural plate relationship: RO:0002202 UBERON:0003056 ! develops from pre-chordal neural plate relationship: RO:0002387 UBERON:0000019 ! has potential to develop into camera-type eye [Term] id: UBERON:0003072 name: optic cup is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0010312 ! part of immature eye relationship: RO:0002202 UBERON:0004128 ! develops from optic vesicle relationship: RO:0002256 UBERON:0003073 ! developmentally induced by lens placode [Term] id: UBERON:0003073 name: lens placode is_a: UBERON:0002546 ! cranial placode is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010312 ! immature eye is_a: UBERON:0011814 ! non-neurogenic ectodermal placode intersection_of: UBERON:0005085 ! ectodermal placode intersection_of: RO:0002387 UBERON:0000965 ! has potential to develop into lens of camera-type eye relationship: BFO:0000050 UBERON:0010312 ! part of immature eye relationship: RO:0002256 UBERON:0004128 ! developmentally induced by optic vesicle relationship: RO:0002387 UBERON:0000965 ! has potential to develop into lens of camera-type eye property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png" xsd:anyURI [Term] id: UBERON:0003074 name: mesonephric duct is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0009201 ! nephric duct relationship: RO:0002202 UBERON:0003060 ! develops from pronephric duct relationship: RO:0002202 UBERON:0005792 ! develops from nephric ridge property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png" xsd:anyURI property_value: IAO:0000116 "Consider adding subclasses for male and female specific variants" xsd:string property_value: IAO:0000116 "TODO - mesonephric portion of the nephric duct" xsd:string property_value: UBPROP:0000011 "In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts." xsd:string [Term] id: UBERON:0003075 name: neural plate is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0016879 ! future central nervous system relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002202 UBERON:0007284 ! develops from presumptive neural plate relationship: RO:0002256 UBERON:0002328 ! developmentally induced by notochord relationship: RO:0002495 UBERON:0007284 ! immediate transformation of presumptive neural plate property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png" xsd:anyURI [Term] id: UBERON:0003076 name: posterior neural tube is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0001049 ! part of neural tube relationship: RO:0002202 UBERON:0003057 ! develops from chordal neural plate [Term] id: UBERON:0003077 name: paraxial mesoderm is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0015212 ! lateral structure relationship: BSPO:0000126 UBERON:0000922 ! embryo relationship: RO:0002202 UBERON:0007285 ! develops from presumptive paraxial mesoderm relationship: RO:0002488 UBERON:0000109 ! existence starts during gastrula stage relationship: RO:0002495 UBERON:0007285 ! immediate transformation of presumptive paraxial mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI [Term] id: UBERON:0003078 name: epibranchial placode is_a: UBERON:0009955 ! neurogenic placode relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system relationship: RO:0002202 UBERON:0000076 ! develops from external ectoderm relationship: RO:0002385 UBERON:0002410 ! has potential to developmentally contribute to autonomic nervous system [Term] id: UBERON:0003080 name: anterior neural tube is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0001049 ! part of neural tube relationship: RO:0002202 UBERON:0003056 ! develops from pre-chordal neural plate property_value: IAO:0000116 "TODO - add grouping class for the anterior end of the neural tube at all stages" xsd:string [Term] id: UBERON:0003081 name: lateral plate mesoderm is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria relationship: RO:0002221 UBERON:0003887 ! surrounds intraembryonic coelom property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI [Term] id: UBERON:0003082 name: myotome is_a: UBERON:0017650 ! developing mesenchymal structure relationship: RO:0002202 UBERON:0004290 ! develops from dermomyotome relationship: RO:0002433 UBERON:0001630 ! contributes to morphology of muscle organ property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png" xsd:anyURI property_value: IAO:0000116 "The term 'myotome' is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class, myomere." xsd:string [Term] id: UBERON:0003083 name: trunk neural crest is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 UBERON:0002342 ! part of neural crest [Term] id: UBERON:0003084 name: heart primordium is_a: UBERON:0001048 ! primordium relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system relationship: RO:0002202 UBERON:0003081 ! develops from lateral plate mesoderm relationship: RO:0002202 UBERON:0004140 ! develops from primary heart field relationship: RO:0002202 UBERON:0007005 ! develops from cardiogenic splanchnic mesoderm property_value: IAO:0000116 "should probably be merged with heart rudiment." xsd:string [Term] id: UBERON:0003089 name: sclerotome is_a: UBERON:0005856 ! developing mesenchymal condensation is_a: UBERON:0007530 ! migrating mesenchyme population relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002202 UBERON:0002329 ! develops from somite property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png" xsd:anyURI [Term] id: UBERON:0003099 name: cranial neural crest is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 UBERON:0002342 ! part of neural crest [Term] id: UBERON:0003100 name: female organism is_a: UBERON:0000468 ! multicellular organism property_value: RO:0002171 UBERON:0003101 [Term] id: UBERON:0003102 name: surface structure is_a: UBERON:0000061 ! anatomical structure relationship: RO:0002220 UBERON:0013514 ! adjacent to space surrounding organism property_value: IAO:0000116 "consider obsoleting. See issue/1305" xsd:string [Term] id: UBERON:0003103 name: compound organ is_a: UBERON:0000062 ! organ property_value: IAO:0000232 "this class was introduced for consistency with CARO. However, in this ontology we typically classify organs directly under 'organ' rather than subdividing into compound and simple organs" xsd:string [Term] id: UBERON:0003104 name: mesenchyme is_a: UBERON:0000479 ! tissue relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002254 UBERON:0000926 {gci_filler="NCBITaxon:7711", gci_relation="BFO:0000050"} ! has developmental contribution from mesoderm relationship: RO:0002328 GO:0032502 ! functionally related to developmental process property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f4/Mesenchymal_Stem_Cell.jpg" xsd:anyURI property_value: IAO:0000116 "the relationship to mesoderm is weaker than develops_from in order to have classes such as 'head mesenchyme from mesoderm' make sense" xsd:string property_value: UBPROP:0000007 "mesenchymal" xsd:string [Term] id: UBERON:0003113 name: dermatocranium is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system relationship: BFO:0000050 UBERON:0010364 ! part of dermal skeleton relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata property_value: IAO:0000116 "wikipedia treats skull roof and dermatocranium as synonymous, but some sources treat the roof as being part of the dermatocranium - see UBERONREF:0000007" xsd:string [Term] id: UBERON:0003114 name: pharyngeal arch 3 is_a: UBERON:0002539 ! pharyngeal arch property_value: UBPROP:0000103 "3" xsd:nonNegativeInteger [Term] id: UBERON:0003115 name: pharyngeal arch 4 is_a: UBERON:0002539 ! pharyngeal arch property_value: UBPROP:0000103 "4" xsd:nonNegativeInteger [Term] id: UBERON:0003117 name: pharyngeal arch 6 is_a: UBERON:0002539 ! pharyngeal arch property_value: UBPROP:0000103 "6" xsd:nonNegativeInteger [Term] id: UBERON:0003118 name: pharyngeal arch artery 1 is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery intersection_of: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 relationship: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 relationship: RO:0002433 UBERON:0004362 ! contributes to morphology of pharyngeal arch 1 property_value: UBPROP:0000008 "Disappears early in development in tetrapods" xsd:string [Term] id: UBERON:0003119 name: pharyngeal arch artery 2 is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery intersection_of: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 relationship: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 relationship: RO:0002433 UBERON:0003066 ! contributes to morphology of pharyngeal arch 2 [Term] id: UBERON:0003120 name: pharyngeal arch artery 3 is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery intersection_of: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 relationship: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 relationship: RO:0002433 UBERON:0003114 ! contributes to morphology of pharyngeal arch 3 [Term] id: UBERON:0003121 name: pharyngeal arch artery 4 comment: proximal right subclavian is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery intersection_of: BFO:0000050 UBERON:0003115 ! part of pharyngeal arch 4 relationship: BFO:0000050 UBERON:0003115 ! part of pharyngeal arch 4 property_value: UBPROP:0000011 "Normally, the left fourth arch becomes the aortic arch, the right fourth arch contributes to the innominate artery[http://emedicine.medscape.com/article/899609-overview] in birds it is the right fourth arch which forms the permanent aorta" xsd:string [Term] id: UBERON:0003123 name: pharyngeal arch artery 6 is_a: UBERON:0004363 ! pharyngeal arch artery intersection_of: UBERON:0004363 ! pharyngeal arch artery intersection_of: BFO:0000050 UBERON:0003117 ! part of pharyngeal arch 6 relationship: BFO:0000050 UBERON:0003117 ! part of pharyngeal arch 6 [Term] id: UBERON:0003126 name: trachea is_a: UBERON:0000117 ! respiratory tube relationship: BFO:0000050 UBERON:0007196 ! part of tracheobronchial tree relationship: RO:0001025 UBERON:0002224 ! located in thoracic cavity relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002202 UBERON:0008947 ! develops from respiratory primordium relationship: RO:0002433 UBERON:0001004 ! contributes to morphology of respiratory system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "tracheal" xsd:string property_value: UBPROP:0000008 "In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx." xsd:string [Term] id: UBERON:0003128 name: cranium is_a: UBERON:0000075 ! subdivision of skeletal system relationship: BFO:0000050 UBERON:0003129 ! part of skull property_value: RO:0002171 UBERON:0003278 property_value: UBPROP:0000007 "cranial" xsd:string [Term] id: UBERON:0003129 name: skull is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system relationship: BFO:0000051 UBERON:0003128 ! has part cranium relationship: BFO:0000051 UBERON:0003278 ! has part skeleton of lower jaw relationship: RO:0002160 NCBITaxon:89593 ! only in taxon Craniata property_value: RO:0002175 NCBITaxon:7762 property_value: UBPROP:0000012 "in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton" xsd:string [Term] id: UBERON:0003133 name: reproductive organ is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000062 ! organ intersection_of: RO:0002216 GO:0000003 ! capable of part of reproduction relationship: RO:0002216 GO:0000003 ! capable of part of reproduction [Term] id: UBERON:0003134 name: female reproductive organ is_a: UBERON:0003133 ! reproductive organ intersection_of: UBERON:0003133 ! reproductive organ intersection_of: BFO:0000050 UBERON:0003100 ! part of female organism relationship: BFO:0000050 UBERON:0000474 ! part of female reproductive system [Term] id: UBERON:0003212 name: gustatory organ is_a: UBERON:0000005 ! chemosensory organ intersection_of: UBERON:0000062 ! organ intersection_of: RO:0002216 GO:0050912 ! capable of part of detection of chemical stimulus involved in sensory perception of taste relationship: BFO:0000050 UBERON:0001033 ! part of gustatory system relationship: RO:0002216 GO:0050912 ! capable of part of detection of chemical stimulus involved in sensory perception of taste [Term] id: UBERON:0003218 name: ovary septum is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary relationship: BFO:0000050 UBERON:0000992 ! part of ovary [Term] id: UBERON:0003220 name: metanephric mesenchyme comment: Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"] is_a: UBERON:0003918 ! kidney mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002387 UBERON:0000081 ! has potential to develop into metanephros relationship: RO:0002202 UBERON:0003074 ! develops from mesonephric duct relationship: RO:0002256 UBERON:0000084 ! developmentally induced by ureteric bud relationship: RO:0002387 UBERON:0000081 ! has potential to develop into metanephros [Term] id: UBERON:0003236 name: epithelium of lower jaw is_a: UBERON:0035037 ! jaw epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region [Term] id: UBERON:0003257 name: yolk sac endoderm is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005292 ! extraembryonic tissue is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: RO:0002007 UBERON:0001040 ! bounding layer of yolk sac intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm relationship: BFO:0000050 UBERON:0001040 ! part of yolk sac relationship: RO:0002007 UBERON:0001040 ! bounding layer of yolk sac [Term] id: UBERON:0003258 name: endoderm of foregut is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015833 ! foregut epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: BFO:0000050 UBERON:0001041 ! part of foregut intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0003259 name: endoderm of midgut is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003352 ! epithelium of midgut is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0003260 name: endoderm of hindgut is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003353 ! epithelium of hindgut is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: BFO:0000050 UBERON:0001046 ! part of hindgut intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0003269 name: skeletal muscle tissue of eye is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0003278 name: skeleton of lower jaw is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0001710 ! skeleton of lower jaw region relationship: BFO:0000050 UBERON:0001708 ! part of jaw skeleton relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region relationship: RO:0002131 UBERON:0008895 ! overlaps splanchnocranium relationship: RO:0002576 UBERON:0001710 ! skeleton of lower jaw region [Term] id: UBERON:0003279 name: endothelium of trachea is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001901 ! epithelium of trachea is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea [Term] id: UBERON:0003281 name: mesentery of stomach is_a: UBERON:0004854 ! gastrointestinal system mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0000945 ! part of stomach relationship: RO:0002433 UBERON:0000945 ! contributes to morphology of stomach property_value: IAO:0000116 "TODO - check primitive vs developed" xsd:string [Term] id: UBERON:0003282 name: mesentery of heart is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0003283 name: mesentery of oesophagus is_a: UBERON:0001975 ! serosa of esophagus is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0003284 name: mesentery of midgut is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut relationship: BFO:0000050 UBERON:0001045 ! part of midgut [Term] id: UBERON:0003288 name: meninx of midbrain is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002360 ! meninx intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain relationship: BFO:0000050 UBERON:0001891 ! part of midbrain property_value: IAO:0000116 "consider changing genus to subdivision of meninx" xsd:string [Term] id: UBERON:0003291 name: meninx of hindbrain is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002360 ! meninx intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: RO:0002202 UBERON:0010091 ! develops from future hindbrain meninx relationship: RO:0002495 UBERON:0010091 ! immediate transformation of future hindbrain meninx property_value: IAO:0000116 "consider changing genus to subdivision of meninx" xsd:string [Term] id: UBERON:0003292 name: meninx of spinal cord is_a: UBERON:0002360 ! meninx is_a: UBERON:0005174 ! dorsal region element intersection_of: UBERON:0002360 ! meninx intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0003294 name: gland of foregut is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0001041 ! part of foregut relationship: BFO:0000050 UBERON:0001041 ! part of foregut [Term] id: UBERON:0003295 name: pharyngeal gland is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0003297 name: gland of integumental system is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system relationship: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0003304 name: mesoderm blood island is_a: UBERON:0003061 ! blood island is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007503 ! epithelial vesicle is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0003061 ! blood island intersection_of: BFO:0000050 UBERON:0000926 ! part of mesoderm relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm relationship: BFO:0000050 UBERON:0007798 ! part of vascular system [Term] id: UBERON:0003314 name: eye mesenchyme is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009891 ! facial mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: RO:0002202 UBERON:0009920 ! develops from optic neural crest property_value: IAO:0000116 "TODO - change mesenchyme relationships to precursor_of" xsd:string [Term] id: UBERON:0003315 name: mesenchyme of ovary is_a: UBERON:0003855 ! gonad mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary relationship: BFO:0000050 UBERON:0000992 ! part of ovary property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003316 name: mesenchyme of yolk sac is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0001040 ! part of yolk sac relationship: BFO:0000050 UBERON:0001040 ! part of yolk sac [Term] id: UBERON:0003324 name: mesenchyme of lower jaw is_a: UBERON:0034995 ! jaw mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region relationship: RO:0002202 UBERON:0006905 ! develops from mandibular process mesenchyme [Term] id: UBERON:0003329 name: submucosa of anal canal is_a: UBERON:0001208 ! submucosa of large intestine is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal relationship: BFO:0000050 UBERON:0000159 ! part of anal canal property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003330 name: submucosa of rectum is_a: UBERON:0001208 ! submucosa of large intestine intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003331 name: submucosa of colon is_a: UBERON:0001208 ! submucosa of large intestine intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001155 ! part of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003332 name: submucosa of duodenum is_a: UBERON:0001205 ! submucosa of small intestine intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0002114 ! part of duodenum property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003334 name: serosa of rectum is_a: UBERON:0001209 ! serosa of large intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003335 name: serosa of colon is_a: UBERON:0001209 ! serosa of large intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0001155 ! part of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003336 name: serosa of duodenum is_a: UBERON:0001206 ! serosa of small intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0002114 ! part of duodenum property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000010 "1st part serosa, 2nd - 4th adventitia" xsd:string [Term] id: UBERON:0003338 name: ganglion of peripheral nervous system is_a: UBERON:0000045 ! ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system [Term] id: UBERON:0003339 name: ganglion of central nervous system is_a: UBERON:0000045 ! ganglion is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000045 ! ganglion intersection_of: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0003342 name: mucosa of anal canal is_a: UBERON:0001207 ! mucosa of large intestine is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal relationship: BFO:0000050 UBERON:0000159 ! part of anal canal property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003343 name: mucosa of oral region is_a: UBERON:0003729 ! mouth mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000166 ! part of oral opening relationship: BFO:0000050 UBERON:0000166 ! part of oral opening [Term] id: UBERON:0003346 name: mucosa of rectum is_a: UBERON:0001207 ! mucosa of large intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003350 name: epithelium of mucosa comment: lies on top of lamina propria is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000344 ! part of mucosa relationship: BFO:0000050 UBERON:0000344 ! part of mucosa [Term] id: UBERON:0003351 name: pharyngeal epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0004807 ! respiratory system epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx relationship: RO:0002202 UBERON:0007690 ! develops from early pharyngeal endoderm [Term] id: UBERON:0003352 name: epithelium of midgut is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut relationship: BFO:0000050 UBERON:0001045 ! part of midgut [Term] id: UBERON:0003353 name: epithelium of hindgut is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001046 ! part of hindgut relationship: BFO:0000050 UBERON:0001046 ! part of hindgut [Term] id: UBERON:0003354 name: epithelium of rectum is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0016885 ! epithelium of terminal part of digestive tract intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003357 name: epithelium of tongue comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies. is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0019304 ! sensory organ epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue relationship: BFO:0000050 UBERON:0001723 ! part of tongue relationship: RO:0002433 UBERON:0001723 ! contributes to morphology of tongue [Term] id: UBERON:0003364 name: epithelium of right lung is_a: UBERON:0000115 ! lung epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung relationship: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0003365 name: epithelium of left lung is_a: UBERON:0000115 ! lung epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung relationship: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0003371 name: pelvic appendage bud ectoderm is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: RO:0002007 UBERON:0005420 ! bounding layer of pelvic appendage bud relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm relationship: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud relationship: RO:0002007 UBERON:0005420 ! bounding layer of pelvic appendage bud relationship: RO:0002202 UBERON:0000076 ! develops from external ectoderm [Term] id: UBERON:0003372 name: pectoral appendage bud ectoderm is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: RO:0002007 UBERON:0005419 ! bounding layer of pectoral appendage bud relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm relationship: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud relationship: RO:0002007 UBERON:0005419 ! bounding layer of pectoral appendage bud relationship: RO:0002202 UBERON:0000076 ! develops from external ectoderm [Term] id: UBERON:0003379 name: cardiac muscle of right atrium is_a: UBERON:0004490 ! cardiac muscle tissue of atrium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium relationship: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003380 name: cardiac muscle of left atrium is_a: UBERON:0004490 ! cardiac muscle tissue of atrium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002079 ! part of left cardiac atrium relationship: BFO:0000050 UBERON:0002079 ! part of left cardiac atrium [Term] id: UBERON:0003381 name: cardiac muscle of right ventricle is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle [Term] id: UBERON:0003382 name: cardiac muscle of left ventricle is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle [Term] id: UBERON:0003383 name: cardiac muscle tissue of interventricular septum is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum is_a: UBERON:0004667 ! interventricular septum muscular part intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002094 ! part of interventricular septum property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003384 name: skeletal muscle tissue of pharynx is_a: UBERON:0004830 ! respiratory system skeletal muscle intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0003386 name: smooth muscle of eye is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: RO:0002433 UBERON:0001015 ! contributes to morphology of musculature property_value: IAO:0000116 "Not clear if we need this and intra-ocular muscle. See issue #331. MA includes ciliary and iris smooth muscle" xsd:string [Term] id: UBERON:0003387 name: smooth muscle of trachea is_a: UBERON:0004233 ! lower respiratory tract smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0003126 ! part of trachea relationship: RO:0002433 UBERON:0003126 ! contributes to morphology of trachea property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003388 name: mesothelium of pericardial cavity is_a: UBERON:0001136 ! mesothelium intersection_of: UBERON:0001136 ! mesothelium intersection_of: BFO:0000050 UBERON:0002407 ! part of pericardium relationship: BFO:0000050 UBERON:0002407 ! part of pericardium [Term] id: UBERON:0003393 name: mesentery of urinary system is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0001008 ! part of renal system relationship: BFO:0000050 UBERON:0001008 ! part of renal system [Term] id: UBERON:0003394 name: mesentery of hindgut is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0001046 ! part of hindgut relationship: BFO:0000050 UBERON:0001046 ! part of hindgut [Term] id: UBERON:0003395 name: mesentery of rectum is_a: UBERON:0003334 ! serosa of rectum is_a: UBERON:0004854 ! gastrointestinal system mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0003396 name: mesentery of colon is_a: UBERON:0003335 ! serosa of colon is_a: UBERON:0004854 ! gastrointestinal system mesentery is_a: UBERON:0007826 ! peritoneal mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0003397 name: mesentery of duodenum is_a: UBERON:0001170 ! mesentery of small intestine is_a: UBERON:0003336 ! serosa of duodenum intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0003406 name: cartilage of respiratory system is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003408 name: gland of digestive tract is_a: UBERON:0002530 ! gland is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0003409 name: gland of tongue is_a: UBERON:0010047 ! oral gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0003412 name: pelvic appendage bud mesenchyme is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud relationship: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud relationship: RO:0002202 UBERON:0005730 ! develops from pelvic appendage field [Term] id: UBERON:0003413 name: pectoral appendage bud mesenchyme is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud relationship: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud relationship: RO:0002202 UBERON:0005729 ! develops from pectoral appendage field [Term] id: UBERON:0003416 name: mesenchyme of tongue is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue relationship: BFO:0000050 UBERON:0001723 ! part of tongue property_value: IAO:0000116 "TODO - develops_from" xsd:string [Term] id: UBERON:0003426 name: dermis adipose tissue is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0003585 ! dermis connective tissue intersection_of: UBERON:0001013 ! adipose tissue intersection_of: BFO:0000050 UBERON:0002067 ! part of dermis [Term] id: UBERON:0003429 name: abdomen nerve is_a: UBERON:0003825 ! nerve of abdominal segment intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0003430 name: neck nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0000974 ! part of neck relationship: BFO:0000050 UBERON:0000974 ! part of neck [Term] id: UBERON:0003438 name: iris nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: RO:0002134 UBERON:0001769 ! innervates iris relationship: RO:0002134 UBERON:0001769 ! innervates iris property_value: IAO:0000116 "added for consistency with mouse ontologies. The term 'ciliary nerve' is usually used to denote either of the two nerves (with different origins) that innervate the iris, as well as ciliary muscles and cornea" xsd:string [Term] id: UBERON:0003439 name: nerve of trunk region is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0003440 name: limb nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0003441 name: forelimb nerve is_a: UBERON:0003440 ! limb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003442 name: hindlimb nerve is_a: UBERON:0003440 ! limb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003443 name: thoracic cavity nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: RO:0001025 UBERON:0002224 ! located in thoracic cavity relationship: RO:0001025 UBERON:0002224 ! located in thoracic cavity property_value: IAO:0000116 "consider merging with thoracic nerve. In MA the only subclass is the phrenic nerve, which arises from a cervical nerve" xsd:string [Term] id: UBERON:0003444 name: pelvis nerve is_a: UBERON:0003825 ! nerve of abdominal segment intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0003457 name: head bone comment: Different sources vary regarding which bones are craniofacial; e.g. hyoid bone is_a: UBERON:0007914 ! bone of craniocervical region intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0003458 name: neck bone is_a: UBERON:0007914 ! bone of craniocervical region intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0000974 ! part of neck relationship: BFO:0000050 UBERON:0000974 ! part of neck [Term] id: UBERON:0003462 name: facial bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0011156 ! part of facial skeleton relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton property_value: IAO:0000116 "test whether 'facial bone' is an exact synonym" xsd:string [Term] id: UBERON:0003463 name: trunk bone is_a: UBERON:0001474 ! bone element is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0003464 name: hindlimb bone is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010742 ! bone of pelvic complex is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: RO:0002202 UBERON:0010885 ! develops from hindlimb cartilage element [Term] id: UBERON:0003468 name: ureteric segment of renal artery is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0000056 ! supplies ureter relationship: BFO:0000050 UBERON:0001184 ! part of renal artery relationship: RO:0002178 UBERON:0000056 ! supplies ureter relationship: RO:0002380 UBERON:0001184 ! branching part of renal artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003469 name: respiratory system artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003643 ! respiratory system arterial blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003471 name: artery of lower lip is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009657 ! artery of lip intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001835 ! supplies lower lip relationship: BFO:0000050 UBERON:0001612 ! part of facial artery relationship: RO:0002178 UBERON:0001835 ! supplies lower lip relationship: RO:0002380 UBERON:0001612 ! branching part of facial artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003473 name: thoracic cavity artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003519 ! thoracic cavity blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: RO:0001025 UBERON:0002224 ! located in thoracic cavity [Term] id: UBERON:0003474 name: meningeal artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0002360 ! supplies meninx relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0002360 ! supplies meninx [Term] id: UBERON:0003475 name: ureteric vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! pelvis blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000050 UBERON:0000056 ! part of ureter [Term] id: UBERON:0003476 name: respiratory system venous blood vessel is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001004 ! drains respiratory system relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0001004 ! drains respiratory system [Term] id: UBERON:0003478 name: vein of lower lip is_a: UBERON:0013136 ! vein of lip intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001835 ! drains lower lip relationship: RO:0002179 UBERON:0001835 ! drains lower lip property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003479 name: thoracic cavity vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003519 ! thoracic cavity blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: RO:0001025 UBERON:0002224 ! located in thoracic cavity [Term] id: UBERON:0003489 name: respiratory system capillary endothelium is_a: UBERON:0001915 ! endothelium of capillary is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0001915 ! endothelium of capillary intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0003526 ! part of respiratory system capillary [Term] id: UBERON:0003494 name: respiratory system venule is_a: UBERON:0001979 ! venule is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001979 ! venule intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003495 name: respiratory system arteriole is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003643 ! respiratory system arterial blood vessel intersection_of: UBERON:0001980 ! arteriole intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0003469 ! part of respiratory system artery [Term] id: UBERON:0003496 name: head blood vessel is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0011362 ! part of cranial blood vasculature [Term] id: UBERON:0003497 name: abdomen blood vessel is_a: UBERON:0003835 ! abdominal segment blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0003498 name: heart blood vessel is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0005985 ! coronary vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0018674 ! part of heart vasculature [Term] id: UBERON:0003499 name: brain blood vessel is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000955 ! part of brain relationship: BFO:0000050 UBERON:0008998 ! part of vasculature of brain [Term] id: UBERON:0003500 name: corneal blood vessel is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000964 ! part of cornea relationship: BFO:0000050 UBERON:0000964 ! part of cornea property_value: IAO:0000116 "follow up on tracker item" xsd:string [Term] id: UBERON:0003501 name: retina blood vessel is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000966 ! part of retina relationship: BFO:0000050 UBERON:0004864 ! part of vasculature of retina relationship: RO:0002433 UBERON:0000966 ! contributes to morphology of retina [Term] id: UBERON:0003502 name: neck blood vessel is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000974 ! part of neck relationship: BFO:0000050 UBERON:0000974 ! part of neck [Term] id: UBERON:0003504 name: respiratory system blood vessel is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003505 name: trachea blood vessel is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0003126 ! part of trachea property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003509 name: arterial blood vessel comment: only in MA - supertype of artery, arteriole, aorta. is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0004572 ! part of arterial system relationship: BFO:0000050 UBERON:0004572 ! part of arterial system [Term] id: UBERON:0003511 name: iris blood vessel is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0001769 ! part of iris relationship: BFO:0000050 UBERON:0004118 ! part of vasculature of iris [Term] id: UBERON:0003512 name: lung blood vessel is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003834 ! thoracic segment blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung relationship: RO:0002433 UBERON:0002048 ! contributes to morphology of lung [Term] id: UBERON:0003513 name: trunk blood vessel is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0003514 name: limb blood vessel is_a: UBERON:0007301 ! appendage blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0003515 name: forelimb blood vessel is_a: UBERON:0003514 ! limb blood vessel is_a: UBERON:0007300 ! pectoral appendage blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003516 name: hindlimb blood vessel is_a: UBERON:0003514 ! limb blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003517 name: kidney blood vessel is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0006544 ! part of kidney vasculature property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003519 name: thoracic cavity blood vessel is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: RO:0001025 UBERON:0002224 ! located in thoracic cavity relationship: RO:0001025 UBERON:0002224 ! located in thoracic cavity [Term] id: UBERON:0003520 name: pelvis blood vessel is_a: UBERON:0003835 ! abdominal segment blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0003526 name: respiratory system capillary is_a: UBERON:0001982 ! capillary is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001982 ! capillary intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003527 name: kidney capillary is_a: UBERON:0001982 ! capillary is_a: UBERON:0003517 ! kidney blood vessel intersection_of: UBERON:0001982 ! capillary intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003528 name: brain gray matter is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: BFO:0000050 UBERON:0000955 ! part of brain relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0003531 name: forelimb skin is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0002102 ! part of forelimb property_value: IAO:0000116 "TODO - check free limb vs pectoral complex" xsd:string [Term] id: UBERON:0003532 name: hindlimb skin is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb property_value: IAO:0000116 "TODO - check free limb vs pelvic complex" xsd:string [Term] id: UBERON:0003538 name: right lung bronchiole is_a: UBERON:0002186 ! bronchiole intersection_of: UBERON:0002186 ! bronchiole intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung relationship: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0003539 name: left lung bronchiole is_a: UBERON:0002186 ! bronchiole intersection_of: UBERON:0002186 ! bronchiole intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung relationship: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0003540 name: right lung terminal bronchiole is_a: UBERON:0002187 ! terminal bronchiole is_a: UBERON:0003538 ! right lung bronchiole intersection_of: UBERON:0002187 ! terminal bronchiole intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0003541 name: left lung terminal bronchiole is_a: UBERON:0002187 ! terminal bronchiole is_a: UBERON:0003539 ! left lung bronchiole intersection_of: UBERON:0002187 ! terminal bronchiole intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0003547 name: brain meninx is_a: UBERON:0002360 ! meninx intersection_of: UBERON:0002360 ! meninx intersection_of: BFO:0000050 UBERON:0000955 ! part of brain relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0003562 name: midbrain dura mater is_a: UBERON:0002092 ! brain dura mater is_a: UBERON:0003288 ! meninx of midbrain intersection_of: UBERON:0002363 ! dura mater intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain [Term] id: UBERON:0003565 name: hindbrain dura mater is_a: UBERON:0002092 ! brain dura mater is_a: UBERON:0003291 ! meninx of hindbrain intersection_of: UBERON:0002363 ! dura mater intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0003566 name: head connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: RO:0002202 UBERON:0005253 ! develops from head mesenchyme relationship: RO:0002494 UBERON:0005253 ! transformation of head mesenchyme [Term] id: UBERON:0003567 name: abdomen connective tissue is_a: UBERON:0003838 ! abdominal segment connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0003568 name: neck connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0000974 ! part of neck relationship: BFO:0000050 UBERON:0000974 ! part of neck [Term] id: UBERON:0003570 name: respiratory system connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003571 name: trachea connective tissue is_a: UBERON:0003580 ! lower respiratory tract connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0003126 ! part of trachea relationship: RO:0002202 UBERON:0009505 ! develops from mesenchyme of trachea relationship: RO:0002494 UBERON:0009505 ! transformation of mesenchyme of trachea property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003580 name: lower respiratory tract connective tissue is_a: UBERON:0003570 ! respiratory system connective tissue is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract [Term] id: UBERON:0003583 name: larynx connective tissue is_a: UBERON:0003570 ! respiratory system connective tissue is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0001737 ! part of larynx [Term] id: UBERON:0003585 name: dermis connective tissue is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002067 ! part of dermis relationship: BFO:0000050 UBERON:0002067 ! part of dermis relationship: RO:0002202 UBERON:0004016 ! develops from dermatome [Term] id: UBERON:0003586 name: trunk connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0003587 name: limb connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002101 ! part of limb relationship: RO:0002202 UBERON:0009749 ! develops from limb mesenchyme relationship: RO:0002494 UBERON:0009749 ! transformation of limb mesenchyme [Term] id: UBERON:0003588 name: forelimb connective tissue is_a: UBERON:0003587 ! limb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: RO:0002202 UBERON:0003859 ! develops from forelimb mesenchyme relationship: RO:0002494 UBERON:0003859 ! transformation of forelimb mesenchyme [Term] id: UBERON:0003589 name: hindlimb connective tissue is_a: UBERON:0003587 ! limb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: RO:0002202 UBERON:0003860 ! develops from hindlimb mesenchyme relationship: RO:0002494 UBERON:0003860 ! transformation of hindlimb mesenchyme [Term] id: UBERON:0003592 name: bronchus connective tissue is_a: UBERON:0003580 ! lower respiratory tract connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0002185 ! part of bronchus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003593 name: thoracic cavity connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: RO:0001025 UBERON:0002224 ! located in thoracic cavity relationship: RO:0001025 UBERON:0002224 ! located in thoracic cavity [Term] id: UBERON:0003594 name: pelvis connective tissue is_a: UBERON:0003838 ! abdominal segment connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0003601 name: neck cartilage is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0000974 ! part of neck relationship: BFO:0000050 UBERON:0000974 ! part of neck [Term] id: UBERON:0003603 name: lower respiratory tract cartilage is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract [Term] id: UBERON:0003604 name: trachea cartilage is_a: UBERON:0003603 ! lower respiratory tract cartilage intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0003126 ! part of trachea relationship: RO:0002202 UBERON:0007267 ! develops from trachea pre-cartilage rings property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png" xsd:anyURI property_value: IAO:0000116 "check whether to classify as part of splanchoncranium" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "in mammals the rings are incomplete, in avians the rings are complete." xsd:string [Term] id: UBERON:0003605 name: eye skin gland is_a: UBERON:0002419 ! skin gland is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015152 ! gland of ocular region intersection_of: UBERON:0002419 ! skin gland intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0003609 name: aorta elastic tissue is_a: UBERON:0003614 ! blood vessel elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0003610 name: heart elastic tissue is_a: UBERON:0003613 ! cardiovascular system elastic tissue is_a: UBERON:0003837 ! thoracic segment connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0003611 name: respiratory system elastic tissue is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0003570 ! respiratory system connective tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0004777 ! part of respiratory system submucosa [Term] id: UBERON:0003613 name: cardiovascular system elastic tissue is_a: UBERON:0002521 ! elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0001009 ! part of circulatory system relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system [Term] id: UBERON:0003614 name: blood vessel elastic tissue is_a: UBERON:0003613 ! cardiovascular system elastic tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel [Term] id: UBERON:0003615 name: lung elastic tissue is_a: UBERON:0000114 ! lung connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0003616 name: bronchus elastic tissue is_a: UBERON:0003592 ! bronchus connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0001957 ! part of submucosa of bronchus [Term] id: UBERON:0003617 name: trachea elastic tissue is_a: UBERON:0003571 ! trachea connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0002202 ! part of submucosa of trachea [Term] id: UBERON:0003618 name: aorta tunica media is_a: UBERON:0002522 ! tunica media intersection_of: UBERON:0002522 ! tunica media intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta relationship: BFO:0000050 UBERON:0004663 ! part of aorta wall relationship: RO:0002433 UBERON:0004663 ! contributes to morphology of aorta wall [Term] id: UBERON:0003619 name: aorta tunica intima is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0004797 ! blood vessel layer intersection_of: UBERON:0002523 ! tunica intima intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta relationship: BFO:0000050 UBERON:0004663 ! part of aorta wall relationship: RO:0002433 UBERON:0004663 ! contributes to morphology of aorta wall [Term] id: UBERON:0003643 name: respiratory system arterial blood vessel is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003509 ! arterial blood vessel intersection_of: UBERON:0003509 ! arterial blood vessel intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003644 name: kidney arterial blood vessel is_a: UBERON:0003509 ! arterial blood vessel is_a: UBERON:0003517 ! kidney blood vessel intersection_of: UBERON:0003509 ! arterial blood vessel intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0003657 name: limb joint comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0003661 name: limb muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0004480 ! part of musculature of limb relationship: RO:0002433 UBERON:0001015 ! contributes to morphology of musculature [Term] id: UBERON:0003662 name: forelimb muscle is_a: UBERON:0003661 ! limb muscle is_a: UBERON:0014794 ! pectoral appendage muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0004481 ! part of musculature of upper limb [Term] id: UBERON:0003663 name: hindlimb muscle is_a: UBERON:0003661 ! limb muscle is_a: UBERON:0014795 ! pelvic appendage muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0004482 ! part of musculature of lower limb [Term] id: UBERON:0003684 name: abdominal cavity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: BFO:0000050 UBERON:0002323 ! part of coelemic cavity lumen intersection_of: RO:0002572 UBERON:0000916 ! luminal space of abdomen relationship: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0035819 ! part of abdominopelvic cavity relationship: RO:0002572 UBERON:0000916 ! luminal space of abdomen property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg" xsd:anyURI [Term] id: UBERON:0003685 name: cranial suture is_a: UBERON:0009198 ! craniofacial suture intersection_of: UBERON:0002209 ! fibrous joint intersection_of: BFO:0000050 UBERON:0003128 ! part of cranium relationship: BFO:0000050 UBERON:0003128 ! part of cranium relationship: RO:0002256 UBERON:0002363 ! developmentally induced by dura mater relationship: RO:0002433 UBERON:0003128 ! contributes to morphology of cranium property_value: UBPROP:0000202 FMA:71385 [Term] id: UBERON:0003687 name: foramen magnum comment: Design pattern notes: check whether this fits the foramen design pattern is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: RO:0002570 UBERON:0001896 ! conduit for medulla oblongata relationship: RO:0001025 UBERON:0001676 ! located in occipital bone relationship: RO:0002570 UBERON:0001896 ! conduit for medulla oblongata property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/39/Gray130.png" xsd:anyURI [Term] id: UBERON:0003697 name: abdominal wall is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0000916 ! part of abdomen property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg" xsd:anyURI [Term] id: UBERON:0003703 name: extrahepatic bile duct is_a: UBERON:0002394 ! bile duct property_value: IAO:0000116 "includes all the cystic duct, all the common bile duct and the extrahapetic part of the hepatic duct" xsd:string property_value: RO:0002171 UBERON:0002107 [Term] id: UBERON:0003704 name: intrahepatic bile duct is_a: UBERON:0002394 ! bile duct intersection_of: UBERON:0002394 ! bile duct intersection_of: BFO:0000050 UBERON:0002107 ! part of liver relationship: BFO:0000050 UBERON:0002107 ! part of liver relationship: RO:0002433 UBERON:0002107 ! contributes to morphology of liver property_value: IAO:0000116 "includes the hepatic duct of the caudate lobe, and the intra- and inter- lobar bile ducts" xsd:string [Term] id: UBERON:0003711 name: brachiocephalic vein is_a: UBERON:0001638 ! vein relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0007204 ! part of brachiocephalic vasculature relationship: RO:0002170 UBERON:0001585 ! connected to anterior vena cava property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003712 name: cavernous sinus is_a: UBERON:0005486 ! venous dural sinus relationship: RO:0002170 UBERON:0007160 ! connected to inferior petrosal sinus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003713 name: splenic vein is_a: UBERON:0001638 ! vein relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0001639 ! connected to hepatic portal vein property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003714 name: neural tissue is_a: UBERON:0000479 ! tissue disjoint_from: UBERON:0004755 ! skeletal tissue relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0003715 name: splanchnic nerve is_a: UBERON:0034729 ! sympathetic nerve intersection_of: UBERON:0001021 ! nerve intersection_of: RO:0002134 UBERON:0000916 ! innervates abdomen relationship: RO:0002134 UBERON:0000916 ! innervates abdomen relationship: RO:0002433 UBERON:0000013 ! contributes to morphology of sympathetic nervous system property_value: UBPROP:0000010 "All carry sympathetic fibers except for the pelvic splanchnic nerves, which carry parasympathetic fibers" xsd:string [Term] id: UBERON:0003716 name: recurrent laryngeal nerve is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0035642 ! laryngeal nerve relationship: BFO:0000050 UBERON:0001759 ! part of vagus nerve relationship: RO:0002160 NCBITaxon:32523 ! only in taxon Tetrapoda relationship: RO:0002202 UBERON:0003117 ! develops from pharyngeal arch 6 relationship: RO:0002380 UBERON:0001759 ! branching part of vagus nerve [Term] id: UBERON:0003721 name: lingual nerve is_a: UBERON:0011779 ! nerve of head region intersection_of: UBERON:0001021 ! nerve intersection_of: RO:0002134 UBERON:0001723 ! innervates tongue relationship: BFO:0000050 UBERON:0000375 ! part of mandibular nerve relationship: RO:0002134 UBERON:0001723 ! innervates tongue relationship: RO:0002380 UBERON:0000375 ! branching part of mandibular nerve [Term] id: UBERON:0003729 name: mouth mucosa is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000165 ! part of mouth relationship: BFO:0000050 UBERON:0000165 ! part of mouth relationship: RO:0002007 UBERON:0000165 ! bounding layer of mouth relationship: RO:0002150 UBERON:0000355 ! continuous with pharyngeal mucosa relationship: RO:0002150 UBERON:0001458 ! continuous with skin of lip relationship: RO:0002433 UBERON:0001007 ! contributes to morphology of digestive system property_value: IAO:0000232 "this is defined as any mucous membrane of the mouth - including palate, lips, uvula, etc. ncit split mouth/oral mucosa into lip and buccal. In future we may split into masticatory/keratinized (gingiva + hard palate) vs lining/non-keratinized (lips, cheeks, floor of mouth, soft palate). FMA distinguishes between mucosa of mouth and region of mouth (the latter including the buccal mucosa)" xsd:string [Term] id: UBERON:0003824 name: nerve of thoracic segment is_a: UBERON:0003439 ! nerve of trunk region intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0003825 name: nerve of abdominal segment is_a: UBERON:0003439 ! nerve of trunk region intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003827 name: thoracic segment bone is_a: UBERON:0003463 ! trunk bone is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0003828 name: abdominal segment bone is_a: UBERON:0003463 ! trunk bone is_a: UBERON:0005173 ! abdominal segment element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003829 name: urethra muscle tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005090 ! muscle structure intersection_of: UBERON:0005090 ! muscle structure intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0003830 name: thoracic segment muscle is_a: UBERON:0001774 ! skeletal muscle of trunk is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0004464 ! part of musculature of thorax [Term] id: UBERON:0003831 name: respiratory system muscle is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0003832 name: esophagus muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001630 ! muscle organ intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus property_value: IAO:0000116 "merge muscle and muscle layer?" xsd:string [Term] id: UBERON:0003833 name: abdominal segment muscle is_a: UBERON:0001774 ! skeletal muscle of trunk is_a: UBERON:0005173 ! abdominal segment element intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003834 name: thoracic segment blood vessel is_a: UBERON:0003513 ! trunk blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0003835 name: abdominal segment blood vessel is_a: UBERON:0003513 ! trunk blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003836 name: abdominal segment skin is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003837 name: thoracic segment connective tissue is_a: UBERON:0003586 ! trunk connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0003838 name: abdominal segment connective tissue is_a: UBERON:0003586 ! trunk connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0003839 name: forelimb joint is_a: UBERON:0003657 ! limb joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0002102 ! part of forelimb property_value: UBPROP:0000202 FMA:71344 [Term] id: UBERON:0003840 name: hindlimb joint is_a: UBERON:0003657 ! limb joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb property_value: UBPROP:0000202 FMA:71348 [Term] id: UBERON:0003842 name: neural tube lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0001049 ! luminal space of neural tube relationship: BFO:0000050 UBERON:0001049 ! part of neural tube relationship: RO:0002572 UBERON:0001049 ! luminal space of neural tube [Term] id: UBERON:0003848 name: gonadal vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002371 UBERON:0000991 ! attached to gonad relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002371 UBERON:0000991 ! attached to gonad property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI [Term] id: UBERON:0003849 name: mesencephalic neural crest is_a: UBERON:0002342 ! neural crest is_a: UBERON:0003099 ! cranial neural crest intersection_of: UBERON:0002342 ! neural crest intersection_of: RO:0002385 UBERON:0001891 ! has potential to developmentally contribute to midbrain relationship: RO:0002385 UBERON:0001891 ! has potential to developmentally contribute to midbrain [Term] id: UBERON:0003852 name: rhombencephalon neural crest is_a: UBERON:0002342 ! neural crest is_a: UBERON:0003099 ! cranial neural crest intersection_of: UBERON:0002342 ! neural crest intersection_of: RO:0002385 UBERON:0002028 ! has potential to developmentally contribute to hindbrain relationship: RO:0002385 UBERON:0002028 ! has potential to developmentally contribute to hindbrain [Term] id: UBERON:0003853 name: spinal cord neural crest is_a: UBERON:0002342 ! neural crest intersection_of: UBERON:0002342 ! neural crest intersection_of: RO:0002385 UBERON:0002240 ! has potential to developmentally contribute to spinal cord relationship: RO:0002385 UBERON:0002240 ! has potential to developmentally contribute to spinal cord [Term] id: UBERON:0003854 name: spinal cord neural plate is_a: UBERON:0003075 ! neural plate intersection_of: UBERON:0003075 ! neural plate intersection_of: RO:0002202 UBERON:0006241 ! develops from future spinal cord relationship: RO:0002202 UBERON:0006241 ! develops from future spinal cord [Term] id: UBERON:0003855 name: gonad mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000991 ! part of gonad relationship: BFO:0000050 UBERON:0000991 ! part of gonad [Term] id: UBERON:0003859 name: forelimb mesenchyme is_a: UBERON:0009749 ! limb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0002102 ! part of forelimb [Term] id: UBERON:0003860 name: hindlimb mesenchyme is_a: UBERON:0009749 ! limb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb [Term] id: UBERON:0003869 name: presumptive ganglion is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0000045 ! has potential to develop into ganglion relationship: RO:0002387 UBERON:0000045 ! has potential to develop into ganglion [Term] id: UBERON:0003886 name: future coelemic cavity lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002387 UBERON:0002323 ! has potential to develop into coelemic cavity lumen relationship: BFO:0000050 UBERON:0000926 ! part of mesoderm relationship: RO:0002387 UBERON:0002323 ! has potential to develop into coelemic cavity lumen relationship: RO:0002488 UBERON:0000109 ! existence starts during gastrula stage relationship: RO:0002492 UBERON:0000111 ! existence ends during organogenesis stage [Term] id: UBERON:0003887 name: intraembryonic coelom is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0011997 ! part of coelom relationship: RO:0002202 UBERON:0003081 ! develops from lateral plate mesoderm property_value: IAO:0000116 "consider merging with coelom. TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. editor note: TODO check ZFA, which appears to be a structure present in adults" xsd:string [Term] id: UBERON:0003891 name: stroma is_a: UBERON:0000064 ! organ part relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002473 UBERON:0002384 ! composed primarily of connective tissue property_value: UBPROP:0000007 "stromal" xsd:string [Term] id: UBERON:0003894 name: liver primordium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0001048 ! primordium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0009497 ! epithelium of foregut-midgut junction intersection_of: UBERON:0001048 ! primordium intersection_of: RO:0002387 UBERON:0002107 ! has potential to develop into liver relationship: BFO:0000050 UBERON:0009550 ! part of endoderm of foregut-midgut junction relationship: RO:0002202 UBERON:0001041 ! develops from foregut relationship: RO:0002387 UBERON:0002107 ! has potential to develop into liver property_value: IAO:0000116 "consider adding further subdivisions of the endoderm, e.g. ventral foregut. Note we place two EFO classes here, it's not clear how they differ" xsd:string [Term] id: UBERON:0003897 name: axial muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0013701 ! part of main body axis intersection_of: RO:0002177 UBERON:0005944 ! attached to part of axial skeleton plus cranial skeleton relationship: BFO:0000050 UBERON:0013700 ! part of axial musculature relationship: RO:0002177 UBERON:0005944 ! attached to part of axial skeleton plus cranial skeleton [Term] id: UBERON:0003898 name: skeletal muscle tissue of trunk is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0004479 ! part of musculature of trunk relationship: BFO:0000050 UBERON:0013700 ! part of axial musculature [Term] id: UBERON:0003902 name: retinal neural layer is_a: UBERON:0001781 ! layer of retina intersection_of: UBERON:0001781 ! layer of retina intersection_of: RO:0002495 UBERON:0005425 ! immediate transformation of presumptive neural retina relationship: RO:0002202 UBERON:0005425 ! develops from presumptive neural retina relationship: RO:0002256 UBERON:0005426 ! developmentally induced by lens vesicle relationship: RO:0002495 UBERON:0005425 ! immediate transformation of presumptive neural retina [Term] id: UBERON:0003914 name: epithelial tube is_a: UBERON:0000025 ! tube is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: RO:0000086 PATO:0002299 ! has quality tubular property_value: IAO:0000232 "contrast with a multi-tissue tube, which has as parts both epithelium, connective tissue, possibly muscle layers" xsd:string [Term] id: UBERON:0003915 name: endothelial tube is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003914 ! epithelial tube intersection_of: UBERON:0001986 ! endothelium intersection_of: RO:0000086 PATO:0002299 ! has quality tubular [Term] id: UBERON:0003918 name: kidney mesenchyme is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002387 UBERON:0002113 ! has potential to develop into kidney relationship: RO:0002387 UBERON:0002113 ! has potential to develop into kidney property_value: IAO:0000116 "check this" xsd:string [Term] id: UBERON:0003920 name: venous blood vessel comment: Compare to: vein is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0004582 ! part of venous system relationship: BFO:0000050 UBERON:0004582 ! part of venous system [Term] id: UBERON:0003921 name: pancreas primordium is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0001048 ! primordium intersection_of: RO:0002387 UBERON:0001264 ! has potential to develop into pancreas relationship: BFO:0000050 UBERON:0007026 ! part of presumptive gut relationship: RO:0002202 UBERON:0000925 ! develops from endoderm relationship: RO:0002387 UBERON:0001264 ! has potential to develop into pancreas property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png" xsd:anyURI property_value: UBPROP:0000013 "revisit after standardizing terms 'primordium', 'anlagen', 'bud'" xsd:string [Term] id: UBERON:0003922 name: pancreatic epithelial bud is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac relationship: BFO:0000050 UBERON:0003921 ! part of pancreas primordium relationship: RO:0002202 UBERON:0001041 ! develops from foregut relationship: RO:0002202 UBERON:0001555 ! develops from digestive tract relationship: RO:0002202 UBERON:0002114 ! develops from duodenum relationship: RO:0002202 UBERON:0009497 ! develops from epithelium of foregut-midgut junction property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/49/Suckale08FBS_fig1_pancreas_development.jpeg" xsd:anyURI property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png" xsd:anyURI [Term] id: UBERON:0003923 name: dorsal pancreatic bud is_a: UBERON:0003922 ! pancreatic epithelial bud relationship: BFO:0000050 UBERON:0010375 ! part of pancreas dorsal primordium relationship: RO:0002202 UBERON:0001045 ! develops from midgut property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png" xsd:anyURI [Term] id: UBERON:0003924 name: ventral pancreatic bud is_a: UBERON:0003922 ! pancreatic epithelial bud relationship: BFO:0000050 UBERON:0010376 ! part of pancreas ventral primordium relationship: RO:0002202 UBERON:0008835 ! develops from hepatic diverticulum property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png" xsd:anyURI property_value: UBPROP:0000011 "the ventral pancreas and liver are derived from a common precursor cell population[PMID:16417468]. TODO - add this relationship." xsd:string property_value: UBPROP:0000011 "The ventral pancreatic bud becomes the head and uncinate process, and comes from the hepatic diverticulum[WP]" xsd:string [Term] id: UBERON:0003928 name: digestive system duct is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct intersection_of: BFO:0000050 UBERON:0001007 ! part of digestive system relationship: BFO:0000050 UBERON:0001007 ! part of digestive system [Term] id: UBERON:0003929 name: digestive tract epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract property_value: UBPROP:0000008 "" xsd:string [Term] id: UBERON:0003932 name: cartilage element of chondrocranium is_a: UBERON:0003933 ! cranial cartilage intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0002241 ! part of chondrocranium relationship: BFO:0000050 UBERON:0002241 ! part of chondrocranium [Term] id: UBERON:0003933 name: cranial cartilage is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system [Term] id: UBERON:0003937 name: reproductive gland is_a: UBERON:0002530 ! gland is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0000990 ! part of reproductive system [Term] id: UBERON:0003942 name: somatosensory system is_a: UBERON:0001032 ! sensory system relationship: RO:0002216 GO:0019233 ! capable of part of sensory perception of pain relationship: RO:0002216 GO:0050975 ! capable of part of sensory perception of touch [Term] id: UBERON:0003952 name: anterior stroma of cornea is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: BSPO:0000123 UBERON:0001777 ! substantia propria of cornea relationship: BFO:0000050 UBERON:0001777 ! part of substantia propria of cornea relationship: BSPO:0000123 UBERON:0001777 ! substantia propria of cornea relationship: RO:0002433 UBERON:0001777 ! contributes to morphology of substantia propria of cornea property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0003953 name: posterior stroma of cornea is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: BSPO:0000122 UBERON:0001777 ! substantia propria of cornea relationship: BFO:0000050 UBERON:0001777 ! part of substantia propria of cornea relationship: BSPO:0000122 UBERON:0001777 ! substantia propria of cornea relationship: RO:0002433 UBERON:0001777 ! contributes to morphology of substantia propria of cornea [Term] id: UBERON:0003967 name: cutaneous elastic tissue is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: BFO:0000050 UBERON:0000014 ! part of zone of skin relationship: BFO:0000050 UBERON:0000014 ! part of zone of skin relationship: RO:0002433 UBERON:0000014 ! contributes to morphology of zone of skin [Term] id: UBERON:0003978 name: valve is_a: UBERON:0000064 ! organ part relationship: RO:0002215 GO:0065008 ! capable of regulation of biological quality property_value: UBPROP:0000007 "valvular" xsd:string [Term] id: UBERON:0004015 name: embryonic-extraembryonic boundary is_a: UBERON:0000015 ! non-material anatomical boundary intersection_of: UBERON:0000015 ! non-material anatomical boundary intersection_of: RO:0002220 UBERON:0000478 ! adjacent to extraembryonic structure intersection_of: RO:0002220 UBERON:0002050 ! adjacent to embryonic structure relationship: RO:0002220 UBERON:0000478 ! adjacent to extraembryonic structure relationship: RO:0002220 UBERON:0002050 ! adjacent to embryonic structure [Term] id: UBERON:0004016 name: dermatome is_a: UBERON:0017650 ! developing mesenchymal structure relationship: RO:0002202 UBERON:0004290 ! develops from dermomyotome property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png" xsd:anyURI property_value: UBPROP:0000013 "Not to be confused with 'dermatome segment of skin'." xsd:string [Term] id: UBERON:0004022 name: germinal neuroepithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034706 ! proliferating neuroepithelium disjoint_from: UBERON:0006934 ! sensory epithelium relationship: BFO:0000050 UBERON:0001049 ! part of neural tube relationship: RO:0002007 UBERON:0001049 ! bounding layer of neural tube relationship: RO:0002220 UBERON:0003842 ! adjacent to neural tube lumen property_value: UBPROP:0000011 "As the cells adjacent to the lumen continue to divide, the migrating cells form a second layer around the original neural tube. This layer becomes progressively thicker as more cells are added to it from the germinal neuroepithelium. This new layer is called the mantle (or intermediate) zone, and the germinal epithelium is now called the ventricular zone (and, later, the ependyma)[NCBIBook:NBK10047]" xsd:string [Term] id: UBERON:0004058 name: biliary ductule is_a: UBERON:0000025 ! tube is_a: UBERON:0004119 ! endoderm-derived structure relationship: BFO:0000050 UBERON:0002107 ! part of liver relationship: BFO:0000050 UBERON:0002394 ! part of bile duct relationship: RO:0002220 UBERON:0001175 ! adjacent to common hepatic duct property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004060 name: neural tube ventricular layer is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034706 ! proliferating neuroepithelium relationship: BFO:0000050 UBERON:0001049 ! part of neural tube relationship: RO:0002202 UBERON:0004022 ! develops from germinal neuroepithelium relationship: RO:0002220 UBERON:0003842 ! adjacent to neural tube lumen relationship: RO:0002495 UBERON:0004022 ! immediate transformation of germinal neuroepithelium property_value: IAO:0000116 "consider merging with 'ventricular zone'; note that the MA class probably does not belong here, as this is an embryonic structure" xsd:string [Term] id: UBERON:0004061 name: neural tube mantle layer is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034707 ! differentiating neuroepithelium relationship: BFO:0000050 UBERON:0001049 ! part of neural tube relationship: RO:0002202 UBERON:0004022 ! develops from germinal neuroepithelium relationship: RO:0002220 UBERON:0004060 ! adjacent to neural tube ventricular layer relationship: RO:0002220 UBERON:0004062 ! adjacent to neural tube marginal layer [Term] id: UBERON:0004062 name: neural tube marginal layer is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005162 ! multi cell part structure relationship: BFO:0000050 UBERON:0001049 ! part of neural tube relationship: RO:0002202 UBERON:0004061 ! develops from neural tube mantle layer relationship: RO:0002220 UBERON:0004061 ! adjacent to neural tube mantle layer [Term] id: UBERON:0004064 name: neural tube basal plate is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0004061 ! part of neural tube mantle layer relationship: BSPO:0000102 UBERON:0005478 ! sulcus limitans of neural tube relationship: RO:0002256 UBERON:0002328 ! developmentally induced by notochord relationship: RO:0002433 UBERON:0004061 ! contributes to morphology of neural tube mantle layer [Term] id: UBERON:0004087 name: vena cava is_a: UBERON:0003479 ! thoracic cavity vein is_a: UBERON:0013768 ! great vessel of heart property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta,_trachea,_esophagus_and_other_heart_structures.png" xsd:anyURI property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/7/7c/Heart_numlabels.png" xsd:anyURI [Term] id: UBERON:0004088 name: orbital region is_a: UBERON:0001444 ! subdivision of head relationship: BFO:0000050 UBERON:0001456 ! part of face property_value: IAO:0000116 "note the FMA class is more narrow though, and is more like eye + muscles + vasculature. The FMA also has FMA:72951 orbital part of eye" xsd:string [Term] id: UBERON:0004100 name: renal collecting system is_a: UBERON:0000467 ! anatomical system relationship: BFO:0000050 UBERON:0002113 ! part of kidney property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004111 name: anatomical conduit is_a: UBERON:0010000 ! multicellular anatomical structure intersection_of: UBERON:0010000 ! multicellular anatomical structure intersection_of: BFO:0000051 UBERON:0013686 ! has part anatomical conduit space intersection_of: RO:0002570 UBERON:0000061 ! conduit for anatomical structure relationship: BFO:0000051 UBERON:0013686 ! has part anatomical conduit space relationship: RO:0002176 UBERON:0000464 {cardinality="2"} ! connects anatomical space relationship: RO:0002570 UBERON:0000061 ! conduit for anatomical structure property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0004117 name: pharyngeal pouch comment: The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0008814 ! part of pharyngeal arch system relationship: RO:0002131 UBERON:0002539 ! overlaps pharyngeal arch relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002202 UBERON:0007690 ! develops from early pharyngeal endoderm [Term] id: UBERON:0004118 name: vasculature of iris is_a: UBERON:0002203 ! vasculature of eye intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0001769 ! part of iris relationship: BFO:0000050 UBERON:0001769 ! part of iris [Term] id: UBERON:0004119 name: endoderm-derived structure is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm relationship: RO:0002202 UBERON:0000925 ! develops from endoderm property_value: IAO:0000232 "Grouping term for query purposes" xsd:string [Term] id: UBERON:0004120 name: mesoderm-derived structure is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0002202 UBERON:0000926 ! develops from mesoderm relationship: RO:0002202 UBERON:0000926 ! develops from mesoderm property_value: IAO:0000232 "Grouping term for query purposes" xsd:string [Term] id: UBERON:0004121 name: ectoderm-derived structure is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0002202 UBERON:0000924 ! develops from ectoderm relationship: RO:0002202 UBERON:0000924 ! develops from ectoderm property_value: IAO:0000232 "Grouping term for query purposes" xsd:string [Term] id: UBERON:0004122 name: genitourinary system is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: BFO:0000051 UBERON:0000990 ! has part reproductive system intersection_of: BFO:0000051 UBERON:0001008 ! has part renal system relationship: BFO:0000051 UBERON:0000990 ! has part reproductive system relationship: BFO:0000051 UBERON:0001008 ! has part renal system relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: UBPROP:0000007 "genitourinary" xsd:string property_value: UBPROP:0000007 "urogenital" xsd:string [Term] id: UBERON:0004128 name: optic vesicle comment: Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode [PMID:16496288] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0010312 ! part of immature eye relationship: RO:0002202 UBERON:0002346 ! develops from neurectoderm relationship: RO:0002202 UBERON:0003071 ! develops from eye primordium relationship: RO:0002256 UBERON:0004880 ! developmentally induced by chordamesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray863.png" xsd:anyURI [Term] id: UBERON:0004133 name: salivatory nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: BFO:0000050 UBERON:0000988 ! part of pons [Term] id: UBERON:0004139 name: cardiogenic plate is_a: UBERON:0002050 ! embryonic structure relationship: RO:0002202 UBERON:0003084 ! develops from heart primordium property_value: IAO:0000116 "TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO" xsd:string [Term] id: UBERON:0004140 name: primary heart field is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm relationship: BFO:0000050 UBERON:0036146 ! part of cardiopharyngeal field [Term] id: UBERON:0004141 name: heart tube is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0012275 ! meso-epithelium relationship: RO:0002202 UBERON:0005498 ! develops from primitive heart tube relationship: RO:0002495 UBERON:0005498 ! immediate transformation of primitive heart tube [Term] id: UBERON:0004142 name: outflow tract septum is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004145 name: outflow tract is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: BFO:0000050 UBERON:0000948 ! part of heart relationship: channel_for UBERON:0000178 ! blood relationship: channels_from UBERON:0000948 ! heart relationship: channels_into UBERON:0001637 ! artery property_value: UBPROP:0000008 "Depending on the species, attached at the cardiac outflow are described the conus arteriosus, the truncus arteriosus and, or the bulbus arteriosus. At the distal limit of these outflow structures, but lying outside the pericardial cavity, is the ventral aorta[PMID:20735616]" xsd:string [Term] id: UBERON:0004148 name: cardiac vein is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0005194 ! thoracic vein is_a: UBERON:0013140 ! systemic vein intersection_of: UBERON:0001638 ! vein intersection_of: BFO:0000050 UBERON:0000948 ! part of heart intersection_of: RO:0002179 UBERON:0002349 ! drains myocardium relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0002349 ! drains myocardium [Term] id: UBERON:0004151 name: cardiac chamber comment: generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0004160 name: proepicardium is_a: UBERON:0003104 ! mesenchyme relationship: BFO:0000050 UBERON:0004161 ! part of septum transversum relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system property_value: UBPROP:0000007 "propepicardial" xsd:string property_value: UBPROP:0000008 "Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole[ZFA]" xsd:string [Term] id: UBERON:0004161 name: septum transversum is_a: UBERON:0003104 ! mesenchyme relationship: BFO:0000050 UBERON:0002100 ! part of trunk relationship: RO:0001025 UBERON:0002323 ! located in coelemic cavity lumen property_value: UBPROP:0000011 "The cranial part of the septum transversum gives rise to the central tendon of the diaphragm and is the origin of the myoblasts that invade the pleuroperitoneal folds resulting in the formation of the muscular diaphragm. The caudal part of the septum transversum is invaded by the hepatic diverticulum which divides within it to form the liver and thus gives rise to the ventral mesentery of the foregut." xsd:string [Term] id: UBERON:0004176 name: external genitalia comment: TODO: make a subdivision of reproductive system. Relabel. See https://github.com/obophenotype/uberon/issues/547 is_a: UBERON:0003133 ! reproductive organ [Term] id: UBERON:0004177 name: hemopoietic organ is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0002390 ! part of hematopoietic system relationship: BFO:0000050 UBERON:0002390 ! part of hematopoietic system property_value: IAO:0000116 "consider splitting out lymph organ, compare with lymph node" xsd:string [Term] id: UBERON:0004178 name: aorta smooth muscle tissue is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0004185 name: endodermal part of digestive tract is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm [Term] id: UBERON:0004203 name: cortical collecting duct is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: BFO:0000050 UBERON:0001225 ! part of cortex of kidney intersection_of: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney relationship: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004208 name: nephrogenic mesenchyme comment: The detailed events associated with the differentiation of the nephrogenic mesenchyme are somewhat complex. It has been suggested that each terminal branch of the ureteric bud stimulates the associated cap mesenchyme tissue to form a renal vesicle (the most primitive stage of nephron development: a stage I nephron). This then elongates, becomes a comma-shaped and then an S-shaped body (stage II nephron), and makes contact with and fuses with the distal component of the ureteric bud. The latter then forms the collecting duct. One fold of the S-shaped body gives rise to Bowman's capsule (also termed the glomerular capsule). Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus. The inner epithelial layer of the Bowman's capsule (also called the visceral epithelium, or podocyte layer because it consists of podocytes) is closely apposed to the endothelial glomerulus. Together, the Bowman's capsule and the glomerulus comprise the definitive renal corpuscle. The rest of the nephron elongates to form components of the proximal tubule, the loop of Henle and the distal tubule. The distal pole of the developing nephron connects to the ureteric bud that induced it at an early stage of nephron/ collecting duct development, before differentiation of the proximal tubule, the loop of Henle and the distal tubule are complete. This connection allows the excretory products produced by the kidney to be removed and subsequently transferred, via the ureter, into the bladder where they are stored until it is appropriate to empty the bladder. [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002387 UBERON:0001285 ! has potential to develop into nephron relationship: RO:0002387 UBERON:0001285 ! has potential to develop into nephron [Term] id: UBERON:0004209 name: renal vesicle is_a: UBERON:0007503 ! epithelial vesicle relationship: BFO:0000050 UBERON:0010536 ! part of nephron progenitor relationship: RO:0002202 UBERON:0004208 ! develops from nephrogenic mesenchyme relationship: RO:0002256 UBERON:0000084 ! developmentally induced by ureteric bud relationship: RO:0002387 UBERON:0004211 ! has potential to develop into nephron epithelium property_value: IAO:0000116 "note that this class includes both metanephric and mesonephric vesicles - ZFA and EHDAA2 associations are placed with these classes. TODO - make a more specific develops_from relationship - see UBERON:0005107 ! metanephric cap" xsd:string [Term] id: UBERON:0004211 name: nephron epithelium is_a: UBERON:0004819 ! kidney epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001285 ! part of nephron relationship: BFO:0000050 UBERON:0001285 ! part of nephron [Term] id: UBERON:0004215 name: back nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004219 name: urethra smooth muscle layer is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0004220 name: large intestine smooth muscle is_a: UBERON:0004221 ! intestine smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine relationship: RO:0002131 UBERON:0011198 ! overlaps muscle layer of large intestine [Term] id: UBERON:0004221 name: intestine smooth muscle is_a: UBERON:0004226 ! gastrointestinal system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine relationship: RO:0002131 UBERON:0012367 ! overlaps muscle layer of intestine relationship: RO:0002433 UBERON:0000160 ! contributes to morphology of intestine [Term] id: UBERON:0004222 name: stomach smooth muscle is_a: UBERON:0004226 ! gastrointestinal system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0001167 ! part of wall of stomach [Term] id: UBERON:0004225 name: respiratory system smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0004226 name: gastrointestinal system smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004227 name: kidney pelvis smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001224 ! part of renal pelvis relationship: BFO:0000050 UBERON:0001224 ! part of renal pelvis relationship: RO:0002433 UBERON:0001224 ! contributes to morphology of renal pelvis [Term] id: UBERON:0004228 name: urinary bladder smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder relationship: BFO:0000050 UBERON:0001255 ! part of urinary bladder [Term] id: UBERON:0004231 name: anal region smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0004233 name: lower respiratory tract smooth muscle is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004225 ! respiratory system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract [Term] id: UBERON:0004234 name: iris smooth muscle is_a: UBERON:0003386 ! smooth muscle of eye intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001769 ! part of iris relationship: BFO:0000050 UBERON:0001606 ! part of muscle of iris property_value: IAO:0000116 "see notes for muscle of iris." xsd:string [Term] id: UBERON:0004236 name: arteriole smooth muscle is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001980 ! part of arteriole relationship: BFO:0000050 UBERON:0001980 ! part of arteriole [Term] id: UBERON:0004237 name: blood vessel smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel property_value: UBPROP:0000009 "Vascular smooth muscle contracts or relaxes to both change the volume of blood vessels and the local blood pressure, a mechanism that is responsible for the redistribution of the blood within the body to areas where it is needed (i.e. areas with temporarily enhanced oxygen consumption). Thus the main function of vascular smooth muscle tonus is to regulate the caliber of the blood vessels in the body. Excessive vasoconstriction leads to hypertension, while excessive vasodilation as in shock leads to hypotension." xsd:string [Term] id: UBERON:0004238 name: spleen smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:0004239 name: small intestine smooth muscle is_a: UBERON:0004221 ! intestine smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine relationship: RO:0002131 UBERON:0011201 ! overlaps muscle layer of small intestine [Term] id: UBERON:0004240 name: gallbladder smooth muscle is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0002110 ! part of gallbladder relationship: BFO:0000050 UBERON:0002110 ! part of gallbladder [Term] id: UBERON:0004242 name: bronchus smooth muscle is_a: UBERON:0004233 ! lower respiratory tract smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0002185 ! part of bronchus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004246 name: outflow tract smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004247 name: bone of dorsum is_a: UBERON:0001474 ! bone element is_a: UBERON:0005174 ! dorsal region element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum property_value: IAO:0000232 "this class may be obsoleted. See: https://github.com/obophenotype/mouse-anatomy-ontology/issues/93" xsd:string property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern" xsd:anyURI [Term] id: UBERON:0004253 name: skin muscle is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system relationship: BFO:0000050 UBERON:0002416 ! part of integumental system relationship: RO:0001025 UBERON:0002097 ! located in skin of body property_value: IAO:0000116 "review as part of general integumentary system review - part of skin, or more generally, integumental system" xsd:string [Term] id: UBERON:0004258 name: back blood vessel is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004265 name: outflow tract myocardium is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004267 name: back connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004271 name: outflow tract pericardium is_a: UBERON:0002407 ! pericardium is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002407 ! pericardium intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004273 name: cartilaginous joint suture is_a: UBERON:0003685 ! cranial suture intersection_of: UBERON:0003685 ! cranial suture intersection_of: BFO:0000050 UBERON:0002213 ! part of cartilaginous joint relationship: BFO:0000050 UBERON:0002213 ! part of cartilaginous joint [Term] id: UBERON:0004277 name: eye muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001630 ! muscle organ intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: RO:0002433 UBERON:0000019 ! contributes to morphology of camera-type eye [Term] id: UBERON:0004288 name: skeleton is_a: UBERON:0034925 ! anatomical collection disjoint_from: UBERON:0004770 ! articular system relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system relationship: RO:0002351 UBERON:0004765 ! has member skeletal element property_value: RO:0002171 UBERON:0000383 property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/The-skeletal-system" xsd:anyURI property_value: UBPROP:0000007 "skeletal" xsd:string [Term] id: UBERON:0004290 name: dermomyotome is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0016888 ! transitional anatomical structure relationship: RO:0002202 UBERON:0002329 ! develops from somite [Term] id: UBERON:0004291 name: heart rudiment is_a: UBERON:0012275 ! meso-epithelium relationship: RO:0002202 UBERON:0004139 ! develops from cardiogenic plate [Term] id: UBERON:0004292 name: cardiac skeleton is_a: UBERON:0003837 ! thoracic segment connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: BFO:0000050 UBERON:0000948 ! part of heart relationship: RO:0002220 UBERON:0002081 ! adjacent to cardiac atrium relationship: RO:0002220 UBERON:0002082 ! adjacent to cardiac ventricle property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png" xsd:anyURI property_value: UBPROP:0000009 "It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support[WP]" xsd:string [Term] id: UBERON:0004297 name: respiratory system blood vessel smooth muscle is_a: UBERON:0004225 ! respiratory system smooth muscle is_a: UBERON:0004237 ! blood vessel smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel relationship: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel [Term] id: UBERON:0004341 name: primitive streak is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: RO:0002387 UBERON:0000925 ! has potential to develop into endoderm relationship: RO:0002387 UBERON:0000926 ! has potential to develop into mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray13.png" xsd:anyURI property_value: RO:0002174 NCBITaxon:32443 [Term] id: UBERON:0004345 name: trophectoderm is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue relationship: BFO:0000050 UBERON:0005631 ! part of extraembryonic membrane relationship: RO:0002202 UBERON:0000085 ! develops from morula property_value: IAO:0000116 "distinction between trophectoderm and trophoblast unclear/inconsistent in many sources" xsd:string property_value: UBPROP:0000007 "trophectodermal" xsd:string [Term] id: UBERON:0004347 name: limb bud comment: developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm is_a: UBERON:0004357 ! paired limb/fin bud relationship: RO:0002160 NCBITaxon:32523 ! only in taxon Tetrapoda relationship: RO:0002254 UBERON:0005733 ! has developmental contribution from limb field relationship: RO:0002256 UBERON:0003081 ! developmentally induced by lateral plate mesoderm relationship: RO:0002387 UBERON:0002101 ! has potential to develop into limb [Term] id: UBERON:0004348 name: optic eminence is_a: UBERON:0006598 ! presumptive structure relationship: RO:0002387 UBERON:0000964 ! has potential to develop into cornea [Term] id: UBERON:0004356 name: apical ectodermal ridge is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm relationship: BFO:0000050 UBERON:0004357 ! part of paired limb/fin bud relationship: RO:0002215 GO:0010464 ! capable of regulation of mesenchymal cell proliferation relationship: RO:0002215 GO:0061037 ! capable of negative regulation of cartilage development relationship: RO:0002256 UBERON:0003104 ! developmentally induced by mesenchyme property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/56/Limbbuddiagram.jpg" xsd:anyURI property_value: IAO:0000232 "note that media, dorsal fins etc have AERs." xsd:string property_value: UBPROP:0000009 "maintaining mesenchyme in plastic proliferating state; maintaining expression of A-P axis genes; interacting with D-V proteins. Genes: AER induced by Fgf10 in mesenchyme. AER secretes Fgf8, which stimulates mitosis in the mesenchyme causing Fgf10 production - positive feedback loop" xsd:string [Term] id: UBERON:0004357 name: paired limb/fin bud comment: Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056] is_a: UBERON:0003102 ! surface structure is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000051 UBERON:0004356 ! has part apical ectodermal ridge relationship: RO:0002254 UBERON:0005732 ! has developmental contribution from paired limb/fin field relationship: RO:0002387 UBERON:0004708 ! has potential to develop into paired limb/fin [Term] id: UBERON:0004362 name: pharyngeal arch 1 is_a: UBERON:0002539 ! pharyngeal arch property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png" xsd:anyURI property_value: UBPROP:0000103 "1" xsd:nonNegativeInteger [Term] id: UBERON:0004363 name: pharyngeal arch artery is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 UBERON:0002539 ! part of pharyngeal arch relationship: BFO:0000050 UBERON:0007303 ! part of pharyngeal vasculature relationship: RO:0002387 UBERON:0001637 ! has potential to develop into artery relationship: RO:0002433 UBERON:0002539 ! contributes to morphology of pharyngeal arch property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/84/Gray473.png" xsd:anyURI property_value: IAO:0000116 "add specific artery derivatives" xsd:string property_value: IAO:0000232 "Do not confuse with arch of aorta." xsd:string property_value: UBPROP:0000008 "Number varies - Lampreys have 8, hagfishes 15; only up to 6 appear in embryonic development in most gnathostome fishes and all tetrapods" xsd:string property_value: UBPROP:0000011 "The third, fourth, and sixth arches, along with the seventh intersegmental arteries and the left dorsal aorta, are the primary contributors to the normal aortic arch and its major thoracic branches" xsd:string [Term] id: UBERON:0004365 name: vitelline blood vessel is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: RO:0002170 UBERON:0001040 ! connected to yolk sac relationship: BFO:0000050 UBERON:0004374 ! part of vitelline vasculature relationship: RO:0002170 UBERON:0001040 ! connected to yolk sac [Term] id: UBERON:0004367 name: Descemet's membrane comment: The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed) is_a: UBERON:0005769 ! basement membrane of epithelium is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: BFO:0000050 UBERON:0000964 ! part of cornea intersection_of: RO:0002220 UBERON:0001777 ! adjacent to substantia propria of cornea intersection_of: RO:0002220 UBERON:0001985 ! adjacent to corneal endothelium relationship: BFO:0000050 UBERON:0000964 ! part of cornea relationship: RO:0000086 PATO:0000964 ! has quality transparent relationship: RO:0002220 UBERON:0001777 ! adjacent to substantia propria of cornea relationship: RO:0002220 UBERON:0001985 ! adjacent to corneal endothelium relationship: RO:0003001 UBERON:0001985 ! produced by corneal endothelium property_value: seeAlso "https://github.com/obophenotype/uberon/issues/15" xsd:anyURI [Term] id: UBERON:0004370 name: anterior limiting lamina of cornea is_a: UBERON:0005769 ! basement membrane of epithelium is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: BFO:0000050 UBERON:0000964 ! part of cornea intersection_of: RO:0002371 UBERON:0001772 ! attached to corneal epithelium relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0000964 ! part of cornea relationship: RO:0002371 UBERON:0001772 ! attached to corneal epithelium property_value: UBPROP:0000008 "Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals" xsd:string [Term] id: UBERON:0004374 name: vitelline vasculature is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: RO:0002170 UBERON:0001040 ! connected to yolk sac relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0001040 ! connected to yolk sac [Term] id: UBERON:0004375 name: bone of free limb or fin is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010740 ! bone of appendage girdle complex intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0004708 ! part of paired limb/fin relationship: BFO:0000050 UBERON:0011582 ! part of paired limb/fin skeleton [Term] id: UBERON:0004381 name: skeleton of limb is_a: UBERON:0010712 ! limb skeleton subdivision is_a: UBERON:0011582 ! paired limb/fin skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0002101 ! skeleton of limb relationship: RO:0002576 UBERON:0002101 ! skeleton of limb [Term] id: UBERON:0004455 name: neurula embryo is_a: UBERON:0000922 ! embryo intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002491 UBERON:0000110 ! existence starts and ends during neurula stage relationship: RO:0002202 UBERON:0004734 ! develops from gastrula relationship: RO:0002491 UBERON:0000110 ! existence starts and ends during neurula stage [Term] id: UBERON:0004456 name: entire sense organ system is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:8450002 ! excretory system relationship: RO:0002131 UBERON:0001016 ! overlaps nervous system relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: UBPROP:0000012 "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string [Term] id: UBERON:0004461 name: skeletal musculature of head comment: This class is restricted to skeletal muscles that attach to the cranial skeleton. This seems to be consistent with FMA and EMAPA usage. Note that by definition this excludes invertebrate head musculature. It corresponds to the individual muscle organ term UBERON:0002376 is_a: UBERON:0008229 ! craniocervical region musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0000033 ! part of head intersection_of: RO:0002371 UBERON:0003129 ! attached to skull relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0013700 ! part of axial musculature relationship: RO:0002202 UBERON:0005253 ! develops from head mesenchyme relationship: RO:0002371 UBERON:0003129 ! attached to skull property_value: seeAlso "https://github.com/obophenotype/mouse-anatomy-ontology/issues/4" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1405" xsd:anyURI [Term] id: UBERON:0004462 name: musculature of body wall is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0000309 ! part of body wall relationship: BFO:0000050 UBERON:0000309 ! part of body wall property_value: UBPROP:0000008 "define generically to encompass both vertebrates and invertebrates" xsd:string [Term] id: UBERON:0004464 name: musculature of thorax is_a: UBERON:0004479 ! musculature of trunk intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0004465 name: musculature of neck is_a: UBERON:0008229 ! craniocervical region musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0000974 ! part of neck relationship: BFO:0000050 UBERON:0000974 ! part of neck [Term] id: UBERON:0004469 name: musculature of back is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0004470 name: musculature of pelvic girdle is_a: UBERON:0004479 ! musculature of trunk is_a: UBERON:0014792 ! musculature of pelvic complex intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region relationship: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region [Term] id: UBERON:0004471 name: musculature of pectoral girdle is_a: UBERON:0014793 ! musculature of pectoral complex intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region relationship: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region [Term] id: UBERON:0004473 name: musculature of face is_a: UBERON:0008229 ! craniocervical region musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0001456 ! part of face relationship: BFO:0000050 UBERON:0001456 ! part of face property_value: IAO:0000116 "originally created to reflect the distinction drawn in FMA between a facial muscle and the entire musculature of the face. However, naming both does not serve any particular purpose" xsd:string [Term] id: UBERON:0004478 name: musculature of larynx is_a: UBERON:0001015 ! musculature is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0001737 ! part of larynx property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0004479 name: musculature of trunk is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0004480 name: musculature of limb is_a: UBERON:0007271 ! appendage musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002101 ! part of limb property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0004481 name: musculature of upper limb is_a: UBERON:0004480 ! musculature of limb is_a: UBERON:0007269 ! pectoral appendage musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb relationship: BFO:0000050 UBERON:0002102 ! part of forelimb property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0004482 name: musculature of lower limb is_a: UBERON:0004480 ! musculature of limb is_a: UBERON:0007270 ! pelvic appendage musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb relationship: BFO:0000050 UBERON:0002103 ! part of hindlimb property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0004490 name: cardiac muscle tissue of atrium is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002081 ! part of cardiac atrium relationship: BFO:0000050 UBERON:0002302 ! part of myocardium of atrium [Term] id: UBERON:0004491 name: cardiac muscle tissue of interatrial septum is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002085 ! part of interatrial septum relationship: BFO:0000050 UBERON:0002085 ! part of interatrial septum [Term] id: UBERON:0004492 name: cardiac muscle tissue of cardiac septum is_a: UBERON:0001133 ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002099 ! part of cardiac septum relationship: BFO:0000050 UBERON:0002099 ! part of cardiac septum [Term] id: UBERON:0004493 name: cardiac muscle tissue of myocardium is_a: UBERON:0001133 ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002349 ! part of myocardium relationship: BFO:0000050 UBERON:0002349 ! part of myocardium property_value: IAO:0000116 "Note placement of MA class based on parthood relationship" xsd:string [Term] id: UBERON:0004515 name: smooth muscle tissue of bronchiole is_a: UBERON:0004233 ! lower respiratory tract smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0002186 ! part of bronchiole relationship: BFO:0000050 UBERON:0002186 ! part of bronchiole property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004516 name: smooth muscle tissue of terminal bronchiole is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole relationship: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004521 name: vasculature of muscle organ is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0001630 ! part of muscle organ relationship: BFO:0000050 UBERON:0001630 ! part of muscle organ [Term] id: UBERON:0004522 name: vasculature of musculoskeletal system is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system relationship: BFO:0000050 UBERON:0002204 ! part of musculoskeletal system [Term] id: UBERON:0004535 name: cardiovascular system is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: BFO:0000050 UBERON:0001009 ! part of circulatory system intersection_of: BFO:0000051 UBERON:0000948 ! has part heart intersection_of: BFO:0000051 UBERON:0001981 ! has part blood vessel relationship: BFO:0000050 UBERON:0001009 ! part of circulatory system relationship: BFO:0000051 UBERON:0000948 ! has part heart relationship: BFO:0000051 UBERON:0001981 ! has part blood vessel property_value: IAO:0000232 "we treat cardiovascular as part of circulatory system, with the latter including other kinds of circulation, including lymph." xsd:string [Term] id: UBERON:0004537 name: blood vasculature is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: RO:0002473 UBERON:0001981 ! composed primarily of blood vessel relationship: RO:0002473 UBERON:0001981 ! composed primarily of blood vessel property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004538 name: left kidney is_a: UBERON:0002113 ! kidney intersection_of: UBERON:0002113 ! kidney intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0004539 name: right kidney is_a: UBERON:0002113 ! kidney intersection_of: UBERON:0002113 ! kidney intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0004548 name: left eye is_a: UBERON:0000970 ! eye is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000970 ! eye intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0004549 name: right eye is_a: UBERON:0000970 ! eye is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000970 ! eye intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0004571 name: systemic arterial system is_a: UBERON:0007798 ! vascular system relationship: BFO:0000050 UBERON:0004572 ! part of arterial system [Term] id: UBERON:0004572 name: arterial system is_a: UBERON:0007798 ! vascular system relationship: RO:0002351 UBERON:0001637 ! has member artery [Term] id: UBERON:0004573 name: systemic artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: BFO:0000050 UBERON:0004571 ! part of systemic arterial system relationship: BFO:0000050 UBERON:0004571 ! part of systemic arterial system [Term] id: UBERON:0004581 name: systemic venous system is_a: UBERON:0002049 ! vasculature relationship: BFO:0000050 UBERON:0004582 ! part of venous system [Term] id: UBERON:0004582 name: venous system is_a: UBERON:0007798 ! vascular system relationship: RO:0002473 UBERON:0001638 ! composed primarily of vein [Term] id: UBERON:0004590 name: sphincter muscle is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0004638 name: blood vessel endothelium is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel [Term] id: UBERON:0004647 name: liver lobule is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure relationship: BFO:0000050 UBERON:0001280 ! part of liver parenchyma relationship: RO:0002433 UBERON:0001280 ! contributes to morphology of liver parenchyma property_value: IAO:0000232 "should not be confused with the anatomic lobes of the liver (caudate lobe, quadrate lobe, left lobe, and right lobe), or any of the functional lobe classification systems.[WP]" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004663 name: aorta wall is_a: UBERON:0035965 ! wall of blood vessel intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta relationship: BFO:0000050 UBERON:0000947 ! part of aorta relationship: RO:0002433 UBERON:0000947 ! contributes to morphology of aorta [Term] id: UBERON:0004664 name: aorta tunica adventitia is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta relationship: BFO:0000050 UBERON:0004663 ! part of aorta wall relationship: RO:0002433 UBERON:0004663 ! contributes to morphology of aorta wall [Term] id: UBERON:0004666 name: interventricular septum membranous part is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005983 ! heart layer is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000158 ! membranous layer intersection_of: BFO:0000050 UBERON:0002094 ! part of interventricular septum relationship: BFO:0000050 UBERON:0002094 ! part of interventricular septum relationship: RO:0002202 UBERON:0000095 ! develops from cardiac neural crest relationship: RO:0002433 UBERON:0002094 ! contributes to morphology of interventricular septum [Term] id: UBERON:0004667 name: interventricular septum muscular part is_a: UBERON:0002385 ! muscle tissue intersection_of: UBERON:0002385 ! muscle tissue intersection_of: BFO:0000050 UBERON:0002094 ! part of interventricular septum relationship: BFO:0000050 UBERON:0002094 ! part of interventricular septum relationship: RO:0002433 UBERON:0002094 ! contributes to morphology of interventricular septum [Term] id: UBERON:0004681 name: vestibular system is_a: UBERON:0001032 ! sensory system intersection_of: UBERON:0001032 ! sensory system intersection_of: RO:0002215 GO:0050957 ! capable of equilibrioception relationship: BFO:0000050 UBERON:0002105 ! part of vestibulo-auditory system relationship: RO:0002215 GO:0050957 ! capable of equilibrioception relationship: RO:0002216 GO:0060005 ! capable of part of vestibular reflex [Term] id: UBERON:0004684 name: raphe nuclei comment: we treat NR obscurus, NR magnus etc as parts of the raphe nuclei. This is consistent with treatment in FMA, where the class is 'set of raphe nuclei' is_a: UBERON:0002616 ! regional part of brain relationship: BFO:0000050 UBERON:0002275 ! part of reticular formation relationship: RO:0002215 GO:0001820 ! capable of serotonin secretion property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png" xsd:anyURI [Term] id: UBERON:0004688 name: costo-cervical trunk is_a: UBERON:0001637 ! artery relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0001533 ! connected to subclavian artery property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b3/Costocervical_trunk_with_branches.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004695 name: arterial system smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0004572 ! part of arterial system relationship: BFO:0000050 UBERON:0004572 ! part of arterial system [Term] id: UBERON:0004696 name: venous system smooth muscle is_a: UBERON:0004237 ! blood vessel smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0004582 ! part of venous system relationship: BFO:0000050 UBERON:0004237 ! part of blood vessel smooth muscle relationship: BFO:0000050 UBERON:0004582 ! part of venous system [Term] id: UBERON:0004698 name: vena cava endothelium is_a: UBERON:0001919 ! endothelium of vein intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0004087 ! part of vena cava relationship: BFO:0000050 UBERON:0004087 ! part of vena cava [Term] id: UBERON:0004699 name: outflow tract endothelium is_a: UBERON:0008307 ! heart endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0004145 ! part of outflow tract relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract [Term] id: UBERON:0004700 name: arterial system endothelium is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0004572 ! part of arterial system relationship: BFO:0000050 UBERON:0004572 ! part of arterial system [Term] id: UBERON:0004701 name: venous system endothelium is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0004582 ! part of venous system relationship: BFO:0000050 UBERON:0004582 ! part of venous system [Term] id: UBERON:0004702 name: respiratory system blood vessel endothelium is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004807 ! respiratory system epithelium intersection_of: UBERON:0004638 ! blood vessel endothelium intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0003504 ! part of respiratory system blood vessel [Term] id: UBERON:0004706 name: bulbus cordis is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000948 ! part of heart property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray466.png" xsd:anyURI property_value: IAO:0000116 "TODO - check relationship to bulbus arteriosus" xsd:string [Term] id: UBERON:0004708 name: paired limb/fin is_a: UBERON:0000026 ! appendage intersection_of: UBERON:0000026 ! appendage intersection_of: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex relationship: BFO:0000051 UBERON:0000014 ! has part zone of skin relationship: BFO:0000051 UBERON:0001015 ! has part musculature relationship: BFO:0000051 UBERON:0002049 ! has part vasculature relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002170 UBERON:0007823 ! connected to appendage girdle region relationship: RO:0002202 UBERON:0004357 ! develops from paired limb/fin bud relationship: RO:0002551 UBERON:0011582 ! has skeleton paired limb/fin skeleton property_value: IAO:0000232 "this class is the union of the classes limb, pectoral fin and pelvic fin." xsd:string [Term] id: UBERON:0004709 name: pelvic appendage is_a: UBERON:0004708 ! paired limb/fin intersection_of: UBERON:0004708 ! paired limb/fin intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex relationship: RO:0002170 UBERON:0001271 ! connected to pelvic girdle region relationship: RO:0002202 UBERON:0005420 ! develops from pelvic appendage bud relationship: RO:0002551 UBERON:0007273 ! has skeleton pelvic appendage skeleton [Term] id: UBERON:0004710 name: pectoral appendage is_a: UBERON:0004708 ! paired limb/fin intersection_of: UBERON:0004708 ! paired limb/fin intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex relationship: RO:0002170 UBERON:0001421 ! connected to pectoral girdle region relationship: RO:0002202 UBERON:0005419 ! develops from pectoral appendage bud relationship: RO:0002551 UBERON:0007272 ! has skeleton pectoral appendage skeleton [Term] id: UBERON:0004711 name: jugular vein is_a: UBERON:0001638 ! vein relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0000974 {gci_filler="NCBITaxon:40674", gci_relation="RO:0002162"} ! part of neck relationship: RO:0002179 UBERON:0000033 ! drains head property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png" xsd:anyURI [Term] id: UBERON:0004716 name: conceptus is_a: UBERON:0000061 ! anatomical structure relationship: BFO:0000051 UBERON:0002050 ! has part embryonic structure relationship: BFO:0000051 UBERON:0016887 ! has part entire extraembryonic component relationship: RO:0002489 UBERON:0000068 ! existence starts with embryo stage relationship: RO:0002493 UBERON:0000068 ! existence ends with embryo stage property_value: IAO:0000116 "EHDAA2 places this as a subtype of organism. This leads to the inference that a conceptus is an embryo (if an embryo is defined as an organism at embryo stage), which eliminates the embryonic + extra-embryonic = conceptus" xsd:string [Term] id: UBERON:0004729 name: nematode larval stage is_a: UBERON:0000069 ! larval stage relationship: RO:0002082 GO:0002119 ! simultaneous with nematode larval development relationship: RO:0002160 NCBITaxon:6231 ! only in taxon Nematoda property_value: seeAlso "https://github.com/obophenotype/uberon/issues/567" xsd:anyURI [Term] id: UBERON:0004731 name: neuromere is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system intersection_of: UBERON:0004732 ! segmental subdivision of nervous system intersection_of: BFO:0000050 UBERON:0001049 ! part of neural tube relationship: BFO:0000050 UBERON:0001049 ! part of neural tube property_value: IAO:0000116 "We take the definition of neuromere from Puelles et al, although the existence of mesomeres and prosomeres may not be widely accepted" xsd:string [Term] id: UBERON:0004732 name: segmental subdivision of nervous system is_a: UBERON:0000063 ! organ subunit intersection_of: UBERON:0000063 ! organ subunit intersection_of: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: BFO:0000050 UBERON:0001016 ! part of nervous system property_value: IAO:0000116 "revisit this after CARO is revised and/or we have defined metameric segment; note that with the additional of an A/P axis constraint this corresponds to what Richter at al call a neuromere (PMID:21062451)" xsd:string [Term] id: UBERON:0004733 name: segmental subdivision of hindbrain is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system intersection_of: UBERON:0000063 ! organ subunit intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0004734 name: gastrula is_a: UBERON:0000922 ! embryo intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002491 UBERON:0000109 ! existence starts and ends during gastrula stage relationship: RO:0002202 UBERON:0000307 ! develops from blastula relationship: RO:0002491 UBERON:0000109 ! existence starts and ends during gastrula stage [Term] id: UBERON:0004737 name: metanephric collecting duct is_a: UBERON:0001232 ! collecting duct of renal tubule is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron relationship: RO:0002202 UBERON:0003220 ! develops from metanephric mesenchyme relationship: RO:0002202 UBERON:0014706 ! develops from primitive renal collecting duct system [Term] id: UBERON:0004742 name: dentary is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 UBERON:0003113 ! part of dermatocranium relationship: BSPO:0000126 UBERON:0003278 ! skeleton of lower jaw relationship: RO:0002202 UBERON:0010336 ! develops from mandibular process mesenchyme from neural crest relationship: RO:0002254 UBERON:0003324 ! has developmental contribution from mesenchyme of lower jaw property_value: UBPROP:0000008 "In lobe-finned fishes and the early fossil tetrapods, the bone homologous to the mandible of mammals is merely the largest of several bones in the lower jaw. In such animals, it is referred to as the dentary bone, and forms the body of the outer surface of the jaw. It is bordered below by a number of splenial bones, while the angle of the jaw is formed by a lower angular bone and a suprangular bone just above it. The inner surface of the jaw is lined by a prearticular bone, while the articular bone forms the articulation with the skull proper. Finally a set of three narrow coronoid bones lie above the prearticular bone. As the name implies, the majority of the teeth are attached to the dentary, but there are commonly also teeth on the coronoid bones, and sometimes on the prearticular as well. This complex primitive pattern has, however, been simplified to various degrees in the great majority of vertebrates, as bones have either fused or vanished entirely. In teleosts, only the dentary, articular, and angular bones remain, while in living amphibians, the dentary is accompanied only by the prearticular, and, in salamanders, one of the coronoids. The lower jaw of reptiles has only a single coronoid and splenial, but retains all the other primitive bones except the prearticular." xsd:string [Term] id: UBERON:0004755 name: skeletal tissue comment: Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from is_a: UBERON:0002384 ! connective tissue relationship: BFO:0000050 UBERON:0004765 ! part of skeletal element [Term] id: UBERON:0004756 name: dermal skeletal element is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004765 ! skeletal element intersection_of: UBERON:0004765 ! skeletal element intersection_of: BFO:0000051 UBERON:0004755 ! has part skeletal tissue intersection_of: RO:0002202 UBERON:0002067 ! develops from dermis relationship: BFO:0000051 UBERON:0004755 ! has part skeletal tissue relationship: RO:0002202 UBERON:0002067 ! develops from dermis [Term] id: UBERON:0004760 name: gland of anal canal is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal relationship: BFO:0000050 UBERON:0000159 ! part of anal canal property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004761 name: cartilaginous neurocranium is_a: UBERON:0000075 ! subdivision of skeletal system relationship: BFO:0000051 UBERON:0002418 ! has part cartilage tissue relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002202 UBERON:0009617 ! develops from head paraxial mesoderm [Term] id: UBERON:0004764 name: intramembranous bone tissue is_a: UBERON:0002481 ! bone tissue intersection_of: UBERON:0002481 ! bone tissue intersection_of: RO:0002353 GO:0001957 ! output of intramembranous ossification relationship: BFO:0000050 UBERON:0002514 ! part of intramembranous bone relationship: RO:0002202 UBERON:0003104 ! develops from mesenchyme relationship: RO:0002353 GO:0001957 ! output of intramembranous ossification [Term] id: UBERON:0004765 name: skeletal element is_a: UBERON:0000062 ! organ relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system [Term] id: UBERON:0004766 name: cranial bone is_a: UBERON:0003457 ! head bone intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0003128 ! part of cranium relationship: BFO:0000050 UBERON:0003128 ! part of cranium property_value: IAO:0000232 "here cranium = skull - mandible" xsd:string [Term] id: UBERON:0004768 name: bone of lower jaw is_a: UBERON:0012360 ! bone of jaw intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0001710 ! part of lower jaw region relationship: BFO:0000050 UBERON:0003278 ! part of skeleton of lower jaw property_value: IAO:0000116 "Do not manually classify under here - bones are automatically classified" xsd:string [Term] id: UBERON:0004770 name: articular system is_a: UBERON:0034925 ! anatomical collection intersection_of: UBERON:0034925 ! anatomical collection intersection_of: RO:0002351 UBERON:0000982 ! has member skeletal joint relationship: BFO:0000050 UBERON:0001434 ! part of skeletal system relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria relationship: RO:0002328 GO:0040011 ! functionally related to locomotion relationship: RO:0002351 UBERON:0000982 ! has member skeletal joint relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage [Term] id: UBERON:0004777 name: respiratory system submucosa is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0003570 ! part of respiratory system connective tissue [Term] id: UBERON:0004778 name: larynx submucosa is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0001737 ! part of larynx [Term] id: UBERON:0004779 name: respiratory system lamina propria is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0003570 ! part of respiratory system connective tissue relationship: BFO:0000050 UBERON:0004785 ! part of respiratory system mucosa [Term] id: UBERON:0004780 name: gastrointestinal system lamina propria is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: BFO:0000050 UBERON:0004786 ! part of gastrointestinal system mucosa [Term] id: UBERON:0004781 name: gallbladder lamina propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0002110 ! part of gallbladder relationship: BFO:0000050 UBERON:0005033 ! part of mucosa of gallbladder [Term] id: UBERON:0004782 name: gastrointestinal system serosa is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004783 name: gallbladder serosa is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0002110 ! part of gallbladder relationship: BFO:0000050 UBERON:0002110 ! part of gallbladder [Term] id: UBERON:0004784 name: heart ventricle wall is_a: UBERON:0037144 ! wall of heart intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle relationship: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle [Term] id: UBERON:0004785 name: respiratory system mucosa is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system property_value: IAO:0000116 "TODO - split respiratory tract mucosa from respiratory system mucosa" xsd:string [Term] id: UBERON:0004786 name: gastrointestinal system mucosa comment: The gut mucosa of amphioxus has insulin-secreting cells. http://www.ncbi.nlm.nih.gov/pubmed/16417468 is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: RO:0002220 UBERON:0006909 ! adjacent to lumen of digestive tract [Term] id: UBERON:0004789 name: larynx mucous gland is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0000414 ! mucous gland intersection_of: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0001824 ! part of mucosa of larynx [Term] id: UBERON:0004790 name: skin mucous gland is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0019319 ! exocrine gland of integumental system intersection_of: UBERON:0000414 ! mucous gland intersection_of: BFO:0000050 UBERON:0002097 ! part of skin of body property_value: IAO:0000116 "See comments for 'skin mucus'" xsd:string [Term] id: UBERON:0004792 name: secretion of endocrine pancreas is_a: UBERON:0004795 ! pancreas secretion intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: BFO:0000050 UBERON:0000016 ! part of endocrine pancreas relationship: BFO:0000050 UBERON:0000016 ! part of endocrine pancreas [Term] id: UBERON:0004793 name: secretion of exocrine pancreas is_a: UBERON:0004795 ! pancreas secretion intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas relationship: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas [Term] id: UBERON:0004794 name: esophagus secretion is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0004795 name: pancreas secretion is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas relationship: BFO:0000050 UBERON:0001264 ! part of pancreas [Term] id: UBERON:0004797 name: blood vessel layer is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel relationship: BFO:0000050 UBERON:0035965 ! part of wall of blood vessel property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/6/61/Blood_vessels.svg" xsd:anyURI [Term] id: UBERON:0004802 name: respiratory tract epithelium is_a: UBERON:0004807 ! respiratory system epithelium is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0010499 ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000065 ! part of respiratory tract relationship: BFO:0000050 UBERON:0000072 ! part of proximo-distal subdivision of respiratory tract relationship: RO:0002433 UBERON:0001004 ! contributes to morphology of respiratory system [Term] id: UBERON:0004807 name: respiratory system epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0004808 name: gastrointestinal system epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004810 name: nephron tubule epithelium is_a: UBERON:0004211 ! nephron epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001231 ! part of nephron tubule intersection_of: RO:0002220 UBERON:0000464 ! adjacent to anatomical space relationship: BFO:0000050 UBERON:0001231 ! part of nephron tubule relationship: RO:0002220 UBERON:0000464 ! adjacent to anatomical space relationship: RO:0002433 UBERON:0001231 ! contributes to morphology of nephron tubule property_value: IAO:0000116 "See https://github.com/obophenotype/uberon/issues/1305" xsd:string [Term] id: UBERON:0004815 name: lower respiratory tract epithelium is_a: UBERON:0004802 ! respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract [Term] id: UBERON:0004816 name: larynx epithelium is_a: UBERON:0004802 ! respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0001737 ! part of larynx relationship: RO:0002433 UBERON:0001737 ! contributes to morphology of larynx property_value: UBPROP:0000010 "composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx [ISBN:0-397-51047-0]" xsd:string [Term] id: UBERON:0004817 name: lacrimal gland epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001817 ! part of lacrimal gland relationship: BFO:0000050 UBERON:0001817 ! part of lacrimal gland [Term] id: UBERON:0004819 name: kidney epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0002113 ! part of kidney relationship: RO:0002433 UBERON:0002113 ! contributes to morphology of kidney [Term] id: UBERON:0004820 name: bile duct epithelium is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0034932 ! epithelium of biliary system is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002394 ! part of bile duct relationship: BFO:0000050 UBERON:0002394 ! part of bile duct [Term] id: UBERON:0004822 name: extrahepatic bile duct epithelium is_a: UBERON:0004820 ! bile duct epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0003703 ! part of extrahepatic bile duct relationship: BFO:0000050 UBERON:0003703 ! part of extrahepatic bile duct [Term] id: UBERON:0004823 name: intrahepatic bile duct epithelium is_a: UBERON:0004820 ! bile duct epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0003704 ! part of intrahepatic bile duct relationship: BFO:0000050 UBERON:0003704 ! part of intrahepatic bile duct [Term] id: UBERON:0004829 name: urethra skeletal muscle tissue is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0003829 ! part of urethra muscle tissue [Term] id: UBERON:0004830 name: respiratory system skeletal muscle is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0004831 name: esophagus skeletal muscle comment: Most muscle tissue lining the digestive tract is smooth, but part of the externa of the esophagus is skeletal is_a: UBERON:0003898 ! skeletal muscle tissue of trunk intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0003832 ! part of esophagus muscle [Term] id: UBERON:0004832 name: anal region skeletal muscle is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0004833 name: lip skeletal muscle is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: BFO:0000050 UBERON:0001833 ! part of lip relationship: BFO:0000050 UBERON:0001833 ! part of lip property_value: IAO:0000116 "this class is derived from MA. Consider re-modeling this as being a muscle that acts on the lips. See: Wikipedia:Lip#Muscles_acting_on_the_lips" xsd:string [Term] id: UBERON:0004834 name: hepatic duct smooth muscle is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0005171 ! part of hepatic duct relationship: BFO:0000050 UBERON:0005171 ! part of hepatic duct [Term] id: UBERON:0004848 name: respiratory system arterial endothelium is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0001917 ! endothelium of artery intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0003469 ! part of respiratory system artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004849 name: respiratory system venous endothelium is_a: UBERON:0001919 ! endothelium of vein is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0001919 ! endothelium of vein intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0003476 ! part of respiratory system venous blood vessel property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004851 name: aorta endothelium is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0004852 name: cardiovascular system endothelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0004535 ! part of cardiovascular system relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system property_value: IAO:0000116 "consider merging with 'endothelium'" xsd:string [Term] id: UBERON:0004854 name: gastrointestinal system mesentery is_a: UBERON:0002095 ! mesentery is_a: UBERON:0004782 ! gastrointestinal system serosa intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0004857 name: skeletal muscle connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: RO:0002221 UBERON:0001134 ! surrounds skeletal muscle tissue relationship: RO:0002221 UBERON:0001134 ! surrounds skeletal muscle tissue [Term] id: UBERON:0004859 name: eye gland comment: Examples: harderian gland, accessory lacrimal gland, gland of Moll, gland of Zeis, nictitating membrane glands is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0000970 ! part of eye relationship: BFO:0000050 UBERON:0000970 ! part of eye [Term] id: UBERON:0004864 name: vasculature of retina is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0036302 ! vasculature of central nervous system plus retina intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0000966 ! part of retina relationship: BFO:0000050 UBERON:0000966 ! part of retina property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004872 name: splanchnic layer of lateral plate mesoderm is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0004873 name: splanchnopleure is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm relationship: RO:0002131 UBERON:0000925 ! overlaps endoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png" xsd:anyURI property_value: IAO:0000116 "TODO - check relationship to LPM" xsd:string [Term] id: UBERON:0004874 name: somatopleure is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm relationship: RO:0002131 UBERON:0000924 ! overlaps ectoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png" xsd:anyURI property_value: UBPROP:0000011 "Gives rise to the paired appendages in jawed vertebrates. a persistent somatopleure through the redistribution and expansion of the lateral plate mesoderm is a synapomorphy for gnathostomes and a critical step in generating a novel developmental module with dramatic evolutionary potentia (Tulenko et al. 2012) http://burkelab.research.wesleyan.edu/current-projects/lamprey/" xsd:string property_value: UBPROP:0000012 "sources differ as to whether this is part-of or develops-from the LPM" xsd:string [Term] id: UBERON:0004875 name: nephrogenic cord comment: part_of or develops_from urogenital ridge? is_a: UBERON:0002050 ! embryonic structure relationship: RO:0002202 UBERON:0004876 ! develops from urogenital fold [Term] id: UBERON:0004876 name: urogenital fold is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000050 UBERON:0009196 ! part of indifferent external genitalia relationship: RO:0002202 UBERON:0003064 ! develops from intermediate mesoderm relationship: RO:0002202 UBERON:0012292 ! develops from embryonic cloacal fold relationship: RO:0002387 UBERON:0004176 ! has potential to develop into external genitalia property_value: UBPROP:0000013 "Less commonly, urogenital fold refers to the fold in the mesonephros which is the precursor of e.g. the suspensory ligament of the ovary. This is the case in older versions of Gray's anatomy[WP]" xsd:string [Term] id: UBERON:0004880 name: chordamesoderm is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0003068 ! part of axial mesoderm relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata property_value: UBPROP:0000012 "WP treats this as synonym of axial mesoderm. Induces neural tube. Gilbert: contains an anterior head process and the notochord." xsd:string [Term] id: UBERON:0004883 name: lung mesenchyme is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung relationship: RO:0002202 UBERON:0003081 ! develops from lateral plate mesoderm property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004902 name: urogenital sinus epithelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009846 ! embryonic cloacal epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000164 ! part of primitive urogenital sinus relationship: BFO:0000050 UBERON:0000164 ! part of primitive urogenital sinus relationship: RO:0002202 UBERON:0009846 ! develops from embryonic cloacal epithelium [Term] id: UBERON:0004904 name: neuron projection bundle connecting eye with brain comment: for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) is_a: UBERON:0000122 ! neuron projection bundle intersection_of: UBERON:0000122 ! neuron projection bundle intersection_of: extends_fibers_into UBERON:0000955 ! brain intersection_of: extends_fibers_into UBERON:0005388 ! photoreceptor array relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0002104 ! part of visual system relationship: extends_fibers_into UBERON:0000955 ! brain relationship: extends_fibers_into UBERON:0005388 ! photoreceptor array [Term] id: UBERON:0004905 name: articulation is_a: UBERON:0034921 ! multi organ part structure relationship: BFO:0000050 UBERON:0004770 ! part of articular system [Term] id: UBERON:0004906 name: ectodermal part of digestive tract is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract intersection_of: RO:0002202 UBERON:0000924 ! develops from ectoderm [Term] id: UBERON:0004907 name: lower digestive tract is_a: UBERON:0004921 ! subdivision of digestive tract relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: RO:0002202 UBERON:0001046 ! develops from hindgut [Term] id: UBERON:0004908 name: upper digestive tract is_a: UBERON:0004921 ! subdivision of digestive tract relationship: RO:0002202 UBERON:0001041 ! develops from foregut [Term] id: UBERON:0004909 name: epithelium of gonad is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000991 ! part of gonad relationship: BFO:0000050 UBERON:0000991 ! part of gonad property_value: IAO:0000116 "after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts" xsd:string [Term] id: UBERON:0004911 name: epithelium of female gonad is_a: UBERON:0004909 ! epithelium of gonad intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary relationship: BFO:0000050 UBERON:0000992 ! part of ovary property_value: IAO:0000116 "after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts" xsd:string [Term] id: UBERON:0004912 name: biliary bud is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum relationship: BFO:0000050 UBERON:0002423 ! part of hepatobiliary system relationship: RO:0002202 UBERON:0004161 ! develops from septum transversum property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png" xsd:anyURI [Term] id: UBERON:0004913 name: hepatopancreatic ampulla is_a: UBERON:0002394 ! bile duct intersection_of: UBERON:0000058 ! duct intersection_of: BFO:0000050 UBERON:0001174 ! part of common bile duct intersection_of: BFO:0000050 UBERON:0004914 ! part of duodenal papilla relationship: BFO:0000050 UBERON:0001174 ! part of common bile duct relationship: BFO:0000050 UBERON:0004914 ! part of duodenal papilla property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/1e/Biliary_system_new.svg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004914 name: duodenal papilla is_a: UBERON:0034944 ! zone of organ relationship: BFO:0000050 UBERON:0000320 ! part of duodenal mucosa property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png" xsd:anyURI [Term] id: UBERON:0004915 name: sphincter of hepatopancreatic ampulla is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011185 ! gastrointestinal sphincter intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: BFO:0000050 UBERON:0004913 ! part of hepatopancreatic ampulla relationship: BFO:0000050 UBERON:0004913 ! part of hepatopancreatic ampulla property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004916 name: anal sphincter is_a: UBERON:0004590 ! sphincter muscle intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region relationship: BFO:0000050 UBERON:0001353 ! part of anal region relationship: RO:0002216 GO:0030421 ! capable of part of defecation [Term] id: UBERON:0004917 name: urethral sphincter is_a: UBERON:0003829 ! urethra muscle tissue is_a: UBERON:0004590 ! sphincter muscle intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0004921 name: subdivision of digestive tract is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: subdivision_of UBERON:0001555 ! digestive tract relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: subdivision_of UBERON:0001555 ! digestive tract property_value: IAO:0000232 "intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct." xsd:string [Term] id: UBERON:0004923 name: organ component layer is_a: UBERON:0000064 ! organ part relationship: BFO:0000050 UBERON:0000060 ! part of anatomical wall relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: UBERON:0004924 name: submucosa of pharynx is_a: UBERON:0004777 ! respiratory system submucosa is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0004926 name: submucosa of cystic duct is_a: UBERON:0004938 ! submucosa of biliary tree intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001152 ! part of cystic duct relationship: BFO:0000050 UBERON:0001152 ! part of cystic duct [Term] id: UBERON:0004932 name: submucosa of sigmoid colon is_a: UBERON:0003331 ! submucosa of colon intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001159 ! part of sigmoid colon relationship: BFO:0000050 UBERON:0001159 ! part of sigmoid colon [Term] id: UBERON:0004934 name: submucosa of body of stomach is_a: UBERON:0001200 ! submucosa of stomach intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001161 ! part of body of stomach relationship: BFO:0000050 UBERON:0001161 ! part of body of stomach [Term] id: UBERON:0004936 name: submucosa of pyloric antrum is_a: UBERON:0004937 ! submucosa of pylorus intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001165 ! part of pyloric antrum relationship: BFO:0000050 UBERON:0001165 ! part of pyloric antrum [Term] id: UBERON:0004937 name: submucosa of pylorus is_a: UBERON:0001200 ! submucosa of stomach intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0004938 name: submucosa of biliary tree is_a: UBERON:0000009 ! submucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001173 ! part of biliary tree relationship: BFO:0000050 UBERON:0001173 ! part of biliary tree [Term] id: UBERON:0004939 name: submucosa of common bile duct is_a: UBERON:0004938 ! submucosa of biliary tree intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001174 ! part of common bile duct relationship: BFO:0000050 UBERON:0001174 ! part of common bile duct [Term] id: UBERON:0004940 name: submucosa of common hepatic duct is_a: UBERON:0004938 ! submucosa of biliary tree intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001175 ! part of common hepatic duct relationship: BFO:0000050 UBERON:0001175 ! part of common hepatic duct [Term] id: UBERON:0004941 name: submucosa of right hepatic duct is_a: UBERON:0004938 ! submucosa of biliary tree intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001176 ! part of right hepatic duct relationship: BFO:0000050 UBERON:0001176 ! part of right hepatic duct [Term] id: UBERON:0004942 name: submucosa of left hepatic duct is_a: UBERON:0004938 ! submucosa of biliary tree intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001177 ! part of left hepatic duct relationship: BFO:0000050 UBERON:0001177 ! part of left hepatic duct [Term] id: UBERON:0004943 name: submucosa of urinary bladder is_a: UBERON:0000009 ! submucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0004952 name: submucosa of bronchiole is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0002186 ! part of bronchiole relationship: BFO:0000050 UBERON:0002186 ! part of bronchiole [Term] id: UBERON:0004980 name: mucosa of ureter is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000050 UBERON:0009916 ! part of wall of ureter [Term] id: UBERON:0004988 name: mucosa of cystic duct is_a: UBERON:0004999 ! mucosa of biliary tree intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001152 ! part of cystic duct relationship: BFO:0000050 UBERON:0001152 ! part of cystic duct [Term] id: UBERON:0004993 name: mucosa of sigmoid colon is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001159 ! part of sigmoid colon relationship: BFO:0000050 UBERON:0001159 ! part of sigmoid colon [Term] id: UBERON:0004995 name: mucosa of body of stomach is_a: UBERON:0001199 ! mucosa of stomach intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001161 ! part of body of stomach relationship: BFO:0000050 UBERON:0001161 ! part of body of stomach [Term] id: UBERON:0004997 name: mucosa of pyloric antrum is_a: UBERON:0004998 ! mucosa of pylorus intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001165 ! part of pyloric antrum relationship: BFO:0000050 UBERON:0001165 ! part of pyloric antrum relationship: BFO:0000050 UBERON:0004998 ! part of mucosa of pylorus [Term] id: UBERON:0004998 name: mucosa of pylorus is_a: UBERON:0001199 ! mucosa of stomach intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0004999 name: mucosa of biliary tree is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001173 ! part of biliary tree relationship: BFO:0000050 UBERON:0001173 ! part of biliary tree [Term] id: UBERON:0005000 name: mucosa of common bile duct is_a: UBERON:0004999 ! mucosa of biliary tree intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001174 ! part of common bile duct relationship: BFO:0000050 UBERON:0001174 ! part of common bile duct [Term] id: UBERON:0005001 name: mucosa of common hepatic duct is_a: UBERON:0004999 ! mucosa of biliary tree intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001175 ! part of common hepatic duct relationship: BFO:0000050 UBERON:0001175 ! part of common hepatic duct [Term] id: UBERON:0005002 name: mucosa of right hepatic duct is_a: UBERON:0004999 ! mucosa of biliary tree intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001176 ! part of right hepatic duct relationship: BFO:0000050 UBERON:0001176 ! part of right hepatic duct [Term] id: UBERON:0005003 name: mucosa of left hepatic duct is_a: UBERON:0004999 ! mucosa of biliary tree intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001177 ! part of left hepatic duct relationship: BFO:0000050 UBERON:0001177 ! part of left hepatic duct [Term] id: UBERON:0005004 name: mucosa of right ureter is_a: UBERON:0004980 ! mucosa of ureter intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001222 ! part of right ureter relationship: BFO:0000050 UBERON:0001222 ! part of right ureter [Term] id: UBERON:0005005 name: mucosa of left ureter is_a: UBERON:0004980 ! mucosa of ureter intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001223 ! part of left ureter relationship: BFO:0000050 UBERON:0001223 ! part of left ureter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005006 name: mucosa of renal pelvis is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001224 ! part of renal pelvis relationship: BFO:0000050 UBERON:0001224 ! part of renal pelvis [Term] id: UBERON:0005014 name: mucosa of female urethra is_a: UBERON:0012299 ! mucosa of urethra intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001334 ! part of female urethra relationship: BFO:0000050 UBERON:0001334 ! part of female urethra [Term] id: UBERON:0005020 name: mucosa of tongue is_a: UBERON:0003729 ! mouth mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0005032 name: mucosa of lower lip is_a: UBERON:0036294 ! mucosa of lip intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001835 ! part of lower lip relationship: BFO:0000050 UBERON:0001835 ! part of lower lip [Term] id: UBERON:0005033 name: mucosa of gallbladder is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0002110 ! part of gallbladder relationship: BFO:0000050 UBERON:0002110 ! part of gallbladder [Term] id: UBERON:0005039 name: mucosa of bronchiole is_a: UBERON:0000379 ! tracheal mucosa is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0002186 ! part of bronchiole relationship: BFO:0000050 UBERON:0002186 ! part of bronchiole [Term] id: UBERON:0005040 name: mucosa of terminal bronchiole is_a: UBERON:0005039 ! mucosa of bronchiole intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole relationship: BFO:0000050 UBERON:0002187 ! part of terminal bronchiole [Term] id: UBERON:0005056 name: external female genitalia comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 is_a: UBERON:0003134 ! female reproductive organ is_a: UBERON:0004176 ! external genitalia intersection_of: UBERON:0004176 ! external genitalia intersection_of: BFO:0000050 UBERON:0000474 ! part of female reproductive system disjoint_from: UBERON:0009196 ! indifferent external genitalia property_value: UBPROP:0000008 "in eutherians, this is known as the vulva in and composed of the mons pubis, the labia majora and minora, the clitoris, the vestibule of the vagina and its glands, and the opening of the urethra and of the vagina [MP:0003126]" xsd:string [Term] id: UBERON:0005057 name: immune organ is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0002405 ! part of immune system relationship: BFO:0000050 UBERON:0002405 ! part of immune system [Term] id: UBERON:0005058 name: hemolymphoid system gland is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system relationship: BFO:0000050 UBERON:0002193 ! part of hemolymphoid system [Term] id: UBERON:0005061 name: neural groove is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0003075 ! part of neural plate [Term] id: UBERON:0005062 name: neural fold is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005157 ! epithelial fold is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 UBERON:0005061 ! part of neural groove relationship: BSPO:0000126 UBERON:0005061 ! neural groove [Term] id: UBERON:0005068 name: neural rod is_a: UBERON:0016879 ! future central nervous system relationship: RO:0002202 UBERON:0007135 ! develops from neural keel [Term] id: UBERON:0005076 name: hindbrain-spinal cord boundary is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002220 UBERON:0002028 ! adjacent to hindbrain intersection_of: RO:0002220 UBERON:0002240 ! adjacent to spinal cord relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: RO:0002220 UBERON:0002028 ! adjacent to hindbrain relationship: RO:0002220 UBERON:0002240 ! adjacent to spinal cord [Term] id: UBERON:0005080 name: metanephric ureteric bud is_a: UBERON:0000084 ! ureteric bud intersection_of: UBERON:0000084 ! ureteric bud intersection_of: RO:0002387 UBERON:0000081 ! has potential to develop into metanephros relationship: RO:0002387 UBERON:0000081 ! has potential to develop into metanephros [Term] id: UBERON:0005081 name: ureter ureteric bud is_a: UBERON:0000084 ! ureteric bud intersection_of: UBERON:0000084 ! ureteric bud intersection_of: RO:0002387 UBERON:0000056 ! has potential to develop into ureter relationship: RO:0002387 UBERON:0000056 ! has potential to develop into ureter [Term] id: UBERON:0005082 name: tube lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002219 UBERON:0000025 ! surrounded by tube relationship: RO:0002219 UBERON:0000025 ! surrounded by tube [Term] id: UBERON:0005085 name: ectodermal placode is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000924 ! part of ectoderm property_value: IAO:0000116 "consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm; need to check taxon-appropriateness" xsd:string property_value: UBPROP:0000008 "With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates." xsd:string [Term] id: UBERON:0005090 name: muscle structure is_a: UBERON:0000061 ! anatomical structure relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: IAO:0000232 "in some organisms such as drosophila, muscles can be single cells. This class groups together all discrete muscle elements, from multicellular muscle organs in vertebrates, to individual single-cell muscles in drisophila" xsd:string [Term] id: UBERON:0005092 name: right horn of sinus venosus is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0002063 ! part of sinus venosus relationship: BSPO:0000121 UBERON:0002063 ! sinus venosus [Term] id: UBERON:0005095 name: kidney rudiment is_a: UBERON:0002050 ! embryonic structure relationship: RO:0002202 UBERON:0007687 ! develops from kidney field property_value: IAO:0000116 "class added for consistency with GO - consider merging with kidney mesenchyme." xsd:string [Term] id: UBERON:0005103 name: mesonephric epithelium is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005106 name: metanephric tubule is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005108 ! metanephric epithelium is_a: UBERON:0006555 ! excretory tube intersection_of: UBERON:0003914 ! epithelial tube intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005108 name: metanephric epithelium is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005109 name: metanephric smooth muscle tissue is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005110 name: metanephric nephron is_a: UBERON:0001285 ! nephron is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: RO:0002202 UBERON:0003220 ! develops from metanephric mesenchyme relationship: RO:0002202 UBERON:0010535 ! develops from primitive metanephric nephron relationship: RO:0002495 UBERON:0010535 ! immediate transformation of primitive metanephric nephron [Term] id: UBERON:0005113 name: metanephric cortex mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure relationship: RO:0002202 UBERON:0010531 ! develops from metanephros induced blastemal cells [Term] id: UBERON:0005115 name: metanephric cortical collecting duct is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004203 ! cortical collecting duct intersection_of: UBERON:0004203 ! cortical collecting duct intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0004737 ! part of metanephric collecting duct relationship: BFO:0000050 UBERON:0010533 ! part of metanephros cortex [Term] id: UBERON:0005134 name: metanephric nephron epithelium is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0005108 ! metanephric epithelium intersection_of: UBERON:0004211 ! nephron epithelium intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0005110 ! part of metanephric nephron [Term] id: UBERON:0005137 name: metanephric capsule is_a: UBERON:0002015 ! kidney capsule is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002015 ! kidney capsule intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005146 name: metanephric nephron tubule is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0005106 ! metanephric tubule is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0001231 ! nephron tubule intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: RO:0002202 UBERON:0003220 ! develops from metanephric mesenchyme [Term] id: UBERON:0005147 name: metanephric renal vesicle is_a: UBERON:0004209 ! renal vesicle is_a: UBERON:0005108 ! metanephric epithelium intersection_of: UBERON:0004209 ! renal vesicle intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: RO:0002202 UBERON:0005113 ! develops from metanephric cortex mesenchyme relationship: RO:0002387 UBERON:0005134 ! has potential to develop into metanephric nephron epithelium [Term] id: UBERON:0005153 name: epithelial bud is_a: UBERON:0005157 ! epithelial fold [Term] id: UBERON:0005156 name: reproductive structure is_a: UBERON:0010000 ! multicellular anatomical structure intersection_of: UBERON:0010000 ! multicellular anatomical structure intersection_of: BFO:0000050 UBERON:0000990 ! part of reproductive system relationship: BFO:0000050 UBERON:0000990 ! part of reproductive system [Term] id: UBERON:0005157 name: epithelial fold is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0005158 name: parenchyma of central nervous system is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0005162 name: multi cell part structure is_a: UBERON:0000061 ! anatomical structure relationship: RO:0002473 GO:0005575 ! composed primarily of cellular_component [Term] id: UBERON:0005171 name: hepatic duct is_a: UBERON:0002394 ! bile duct relationship: RO:0002176 UBERON:0001174 ! connects common bile duct relationship: RO:0002176 UBERON:0002107 ! connects liver property_value: IAO:0000116 "TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same" xsd:string [Term] id: UBERON:0005172 name: abdomen element is_a: UBERON:0005173 ! abdominal segment element intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen relationship: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0005173 name: abdominal segment element is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0005174 name: dorsal region element is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0005177 name: trunk region element is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0005178 name: thoracic cavity element is_a: UBERON:0002075 ! viscus is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0000062 ! organ intersection_of: RO:0001025 UBERON:0002224 ! located in thoracic cavity relationship: RO:0001025 UBERON:0002224 ! located in thoracic cavity [Term] id: UBERON:0005179 name: pelvic region element is_a: UBERON:0005173 ! abdominal segment element intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk [Term] id: UBERON:0005181 name: thoracic segment organ is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0005194 name: thoracic vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003834 ! thoracic segment blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk [Term] id: UBERON:0005204 name: larynx submucosa gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0004778 ! part of larynx submucosa relationship: BFO:0000050 UBERON:0004778 ! part of larynx submucosa [Term] id: UBERON:0005208 name: right atrium valve is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium relationship: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium [Term] id: UBERON:0005216 name: optic eminence surface ectoderm is_a: UBERON:0000076 ! external ectoderm intersection_of: UBERON:0000076 ! external ectoderm intersection_of: BFO:0000050 UBERON:0004348 ! part of optic eminence relationship: BFO:0000050 UBERON:0005234 ! part of optic eminence ectoderm [Term] id: UBERON:0005221 name: liver right lobe parenchyma is_a: UBERON:0001280 ! liver parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: BFO:0000050 UBERON:0001114 ! part of right lobe of liver relationship: BFO:0000050 UBERON:0001114 ! part of right lobe of liver [Term] id: UBERON:0005222 name: liver left lobe parenchyma is_a: UBERON:0001280 ! liver parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: BFO:0000050 UBERON:0001115 ! part of left lobe of liver relationship: BFO:0000050 UBERON:0001115 ! part of left lobe of liver [Term] id: UBERON:0005234 name: optic eminence ectoderm is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm intersection_of: BFO:0000050 UBERON:0004348 ! part of optic eminence relationship: BFO:0000050 UBERON:0004348 ! part of optic eminence [Term] id: UBERON:0005239 name: basal plate metencephalon is_a: UBERON:0004064 ! neural tube basal plate [Term] id: UBERON:0005243 name: interventricular septum endocardium is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: BFO:0000050 UBERON:0002094 ! part of interventricular septum relationship: BFO:0000050 UBERON:0002094 ! part of interventricular septum property_value: IAO:0000116 "TODO - split?" xsd:string [Term] id: UBERON:0005248 name: bulbus cordis myocardium is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: BFO:0000050 UBERON:0004706 ! part of bulbus cordis relationship: BFO:0000050 UBERON:0004706 ! part of bulbus cordis [Term] id: UBERON:0005249 name: metanephric renal pelvis is_a: UBERON:0001224 ! renal pelvis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0000081 ! part of metanephros [Term] id: UBERON:0005250 name: stomatodeum gland is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0000930 ! part of stomodeum relationship: BFO:0000050 UBERON:0000930 ! part of stomodeum property_value: IAO:0000116 "check this" xsd:string [Term] id: UBERON:0005251 name: yolk sac cavity is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0007473 ! lumen of epithelial sac is_a: UBERON:0012466 ! extraembryonic cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0001040 ! luminal space of yolk sac relationship: BFO:0000050 UBERON:0001040 ! part of yolk sac relationship: RO:0002572 UBERON:0001040 ! luminal space of yolk sac [Term] id: UBERON:0005253 name: head mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0009142 ! part of entire embryonic mesenchyme [Term] id: UBERON:0005256 name: trunk mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0009142 ! part of entire embryonic mesenchyme [Term] id: UBERON:0005268 name: renal cortex artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003644 ! kidney arterial blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001225 ! supplies cortex of kidney relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney relationship: RO:0002178 UBERON:0001225 ! supplies cortex of kidney relationship: RO:0002433 UBERON:0001225 ! contributes to morphology of cortex of kidney [Term] id: UBERON:0005269 name: renal cortex vein is_a: UBERON:0013126 ! vein of abdomen is_a: UBERON:0014401 ! renal venous blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001225 ! drains cortex of kidney relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney relationship: RO:0002179 UBERON:0001225 ! drains cortex of kidney relationship: RO:0002433 UBERON:0001225 ! contributes to morphology of cortex of kidney [Term] id: UBERON:0005290 name: myelencephalon is_a: UBERON:0004733 ! segmental subdivision of hindbrain relationship: RO:0002202 UBERON:0010096 ! develops from future myelencephalon relationship: RO:0002495 UBERON:0010096 ! immediate transformation of future myelencephalon property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: RO:0002174 NCBITaxon:7955 property_value: UBPROP:0000013 "the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes" xsd:string [Term] id: UBERON:0005291 name: embryonic tissue is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo relationship: BFO:0000050 UBERON:0002050 ! part of embryonic structure [Term] id: UBERON:0005292 name: extraembryonic tissue is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue intersection_of: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component [Term] id: UBERON:0005309 name: pronephric nephron is_a: UBERON:0001285 ! nephron is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: BFO:0000050 UBERON:0002120 ! part of pronephros relationship: BFO:0000050 UBERON:0002120 ! part of pronephros [Term] id: UBERON:0005310 name: pronephric nephron tubule is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0001231 ! nephron tubule intersection_of: BFO:0000050 UBERON:0005309 ! part of pronephric nephron relationship: BFO:0000050 UBERON:0005309 ! part of pronephric nephron [Term] id: UBERON:0005316 name: endocardial endothelium is_a: UBERON:0008307 ! heart endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0002165 ! part of endocardium relationship: BFO:0000050 UBERON:0002165 ! part of endocardium [Term] id: UBERON:0005317 name: pulmonary artery endothelium is_a: UBERON:0001917 ! endothelium of artery intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0002012 ! part of pulmonary artery relationship: BFO:0000050 UBERON:0002012 ! part of pulmonary artery [Term] id: UBERON:0005319 name: mesonephric collecting duct is_a: UBERON:0001232 ! collecting duct of renal tubule is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron [Term] id: UBERON:0005321 name: mesonephric smooth muscle tissue is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005322 name: mesonephric nephron is_a: UBERON:0001285 ! nephron is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: RO:0002202 UBERON:0005323 ! develops from mesonephric mesenchyme [Term] id: UBERON:0005323 name: mesonephric mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0005330 name: mesonephric nephron epithelium is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0005103 ! mesonephric epithelium intersection_of: UBERON:0004211 ! nephron epithelium intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: BFO:0000050 UBERON:0005322 ! part of mesonephric nephron [Term] id: UBERON:0005331 name: mesonephric renal vesicle is_a: UBERON:0004209 ! renal vesicle is_a: UBERON:0005103 ! mesonephric epithelium intersection_of: UBERON:0004209 ! renal vesicle intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: RO:0002202 UBERON:0010534 ! develops from primitive mesonephric nephron relationship: RO:0002387 UBERON:0005330 ! has potential to develop into mesonephric nephron epithelium [Term] id: UBERON:0005334 name: oral lamina propria is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0003343 ! part of mucosa of oral region relationship: BFO:0000050 UBERON:0003343 ! part of mucosa of oral region [Term] id: UBERON:0005337 name: outflow tract of ventricle is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle relationship: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle [Term] id: UBERON:0005338 name: outflow tract aortic component is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract intersection_of: BFO:0000050 UBERON:0000947 ! part of aorta relationship: BFO:0000050 UBERON:0000947 ! part of aorta property_value: IAO:0000116 "merge with LVOT?" xsd:string [Term] id: UBERON:0005339 name: outflow tract pulmonary component is_a: UBERON:0004145 ! outflow tract property_value: IAO:0000116 "merge with RVOT?" xsd:string [Term] id: UBERON:0005362 name: vagus X ganglion is_a: UBERON:0009127 ! epibranchial ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: extends_fibers_into UBERON:0001759 ! vagus nerve relationship: extends_fibers_into UBERON:0001759 ! vagus nerve [Term] id: UBERON:0005388 name: photoreceptor array is_a: UBERON:0004923 ! organ component layer relationship: BFO:0000050 UBERON:0000970 ! part of eye relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0005389 name: transparent eye structure is_a: UBERON:0000061 ! anatomical structure relationship: BFO:0000050 UBERON:0000970 ! part of eye relationship: RO:0000086 PATO:0000964 ! has quality transparent property_value: UBPROP:0000009 "directing or focusing light onto light receptors" xsd:string [Term] id: UBERON:0005396 name: carotid artery segment is_a: UBERON:0004573 ! systemic artery property_value: IAO:0000116 "This is a generic grouping class that is the superclass of the trunks/branches of the common carotid artery. Note that AOs vary widely in how they divide up and generalize arteries" xsd:string [Term] id: UBERON:0005398 name: female reproductive gland is_a: UBERON:0003937 ! reproductive gland intersection_of: UBERON:0003937 ! reproductive gland intersection_of: BFO:0000050 UBERON:0000474 ! part of female reproductive system relationship: BFO:0000050 UBERON:0003134 ! part of female reproductive organ [Term] id: UBERON:0005409 name: alimentary part of gastrointestinal system is_a: UBERON:0000467 ! anatomical system relationship: BFO:0000050 UBERON:0001007 ! part of digestive system relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: IAO:0000116 "the decision to split digestive and gastrointestinal in this way may be revisited. As it currently stands, this class more closely aligns what MA calls the alimentary system" xsd:string [Term] id: UBERON:0005417 name: forelimb bud comment: Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick // In tetrapods, the position of the forelimb is associated with the anterior expression border of Hoxc6 in the paraxial mesoderm (Burke et al., 1995) is_a: UBERON:0004347 ! limb bud is_a: UBERON:0005419 ! pectoral appendage bud intersection_of: UBERON:0004347 ! limb bud intersection_of: RO:0002387 UBERON:0002102 ! has potential to develop into forelimb relationship: RO:0002387 UBERON:0002102 ! has potential to develop into forelimb [Term] id: UBERON:0005418 name: hindlimb bud comment: Genes: Tbx4 specifies hindlimbs. Wnt8c restricts Fgf10 in chick. is_a: UBERON:0004347 ! limb bud is_a: UBERON:0005420 ! pelvic appendage bud intersection_of: UBERON:0004347 ! limb bud intersection_of: BFO:0000050 UBERON:0000154 ! part of posterior region of body intersection_of: RO:0002387 UBERON:0002103 ! has potential to develop into hindlimb relationship: RO:0002387 UBERON:0002103 ! has potential to develop into hindlimb [Term] id: UBERON:0005419 name: pectoral appendage bud comment: at this time we have no need to name a more specific 'pectoral fin bud' class, but we may in future is_a: UBERON:0004357 ! paired limb/fin bud intersection_of: UBERON:0004357 ! paired limb/fin bud intersection_of: RO:0002387 UBERON:0004710 ! has potential to develop into pectoral appendage relationship: BFO:0000050 UBERON:0000153 ! part of anterior region of body relationship: RO:0002254 UBERON:0005729 ! has developmental contribution from pectoral appendage field relationship: RO:0002387 UBERON:0004710 ! has potential to develop into pectoral appendage [Term] id: UBERON:0005420 name: pelvic appendage bud comment: at this time we have no need to name a more specific 'pelvic fin bud' class, but we may in future is_a: UBERON:0004357 ! paired limb/fin bud intersection_of: UBERON:0004357 ! paired limb/fin bud intersection_of: BFO:0000050 UBERON:0000154 ! part of posterior region of body intersection_of: RO:0002387 UBERON:0004709 ! has potential to develop into pelvic appendage relationship: BFO:0000050 UBERON:0000154 ! part of posterior region of body relationship: RO:0002254 UBERON:0005730 ! has developmental contribution from pelvic appendage field relationship: RO:0002387 UBERON:0004709 ! has potential to develop into pelvic appendage [Term] id: UBERON:0005421 name: pectoral appendage apical ectodermal ridge is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge intersection_of: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud relationship: BFO:0000050 UBERON:0005419 ! part of pectoral appendage bud relationship: RO:0002202 UBERON:0003372 ! develops from pectoral appendage bud ectoderm [Term] id: UBERON:0005422 name: pelvic appendage apical ectodermal ridge is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge intersection_of: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud relationship: BFO:0000050 UBERON:0005420 ! part of pelvic appendage bud relationship: RO:0002202 UBERON:0003371 ! develops from pelvic appendage bud ectoderm [Term] id: UBERON:0005423 name: developing anatomical structure is_a: UBERON:0000465 ! material anatomical entity relationship: RO:0002215 GO:0032502 ! capable of developmental process property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0005425 name: presumptive neural retina is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010312 ! immature eye intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0003902 ! has potential to develop into retinal neural layer relationship: BFO:0000050 UBERON:0003072 ! part of optic cup relationship: RO:0002387 UBERON:0003902 ! has potential to develop into retinal neural layer [Term] id: UBERON:0005426 name: lens vesicle is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: RO:0002202 UBERON:0003073 ! develops from lens placode [Term] id: UBERON:0005427 name: corneal primordium is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium is_a: UBERON:0010312 ! immature eye is_a: UBERON:0010313 ! neural crest-derived structure relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0005428 name: vagal neural crest is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0002342 ! part of neural crest [Term] id: UBERON:0005432 name: aortic sac is_a: UBERON:0001637 ! artery is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003498 ! heart blood vessel relationship: BFO:0000050 UBERON:0004145 ! part of outflow tract relationship: RO:0002202 UBERON:0004363 ! develops from pharyngeal arch artery [Term] id: UBERON:0005436 name: common hepatic artery is_a: UBERON:0004573 ! systemic artery relationship: BFO:0000050 UBERON:0001640 ! part of celiac artery relationship: RO:0002380 UBERON:0001640 ! branching part of celiac artery property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005456 name: jugular foramen is_a: UBERON:0018321 ! foramen for glossopharyngeal nerve intersection_of: UBERON:0013685 ! foramen of skull intersection_of: BFO:0000050 UBERON:0001678 ! part of temporal bone intersection_of: RO:0002570 UBERON:0001586 ! conduit for internal jugular vein relationship: BFO:0000050 UBERON:0001678 ! part of temporal bone relationship: RO:0002570 UBERON:0001586 ! conduit for internal jugular vein relationship: RO:0002570 UBERON:0001759 ! conduit for vagus nerve relationship: RO:0002570 UBERON:0002019 ! conduit for accessory XI nerve property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/fa/Foramenjugulare.PNG" xsd:anyURI [Term] id: UBERON:0005460 name: left vitelline vein is_a: UBERON:0005487 ! vitelline vein is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0005487 ! vitelline vein intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0005472 name: right vitelline vein is_a: UBERON:0005487 ! vitelline vein is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0005487 ! vitelline vein intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0005478 name: sulcus limitans of neural tube is_a: UBERON:0006846 ! surface groove relationship: BFO:0000050 UBERON:0005496 ! part of neural tube lateral wall [Term] id: UBERON:0005486 name: venous dural sinus is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006615 ! venous sinus intersection_of: UBERON:0006615 ! venous sinus intersection_of: RO:0001025 UBERON:0002363 ! located in dura mater relationship: BFO:0000050 UBERON:0003711 ! part of brachiocephalic vein relationship: BFO:0000050 UBERON:0010743 ! part of meningeal cluster relationship: RO:0001025 UBERON:0002363 ! located in dura mater property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif" xsd:anyURI property_value: IAO:0000116 "the MA placement should be checked" xsd:string [Term] id: UBERON:0005487 name: vitelline vein is_a: UBERON:0004365 ! vitelline blood vessel is_a: UBERON:0013140 ! systemic vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001040 ! drains yolk sac relationship: RO:0002179 UBERON:0001040 ! drains yolk sac property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray475.png" xsd:anyURI [Term] id: UBERON:0005491 name: glossopharyngeal neural crest is_a: UBERON:0003099 ! cranial neural crest [Term] id: UBERON:0005496 name: neural tube lateral wall is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0001049 ! part of neural tube [Term] id: UBERON:0005497 name: non-neural ectoderm comment: Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998). is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure property_value: IAO:0000116 "todo - epidermis? todo - track down EHDAA2 class in new release" xsd:string property_value: RO:0002171 UBERON:0002346 property_value: UBPROP:0000011 "After gastrulation, neural crest cells are specified at the border of the neural plate and the non-neural ectoderm." xsd:string [Term] id: UBERON:0005498 name: primitive heart tube is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0000922 ! part of embryo relationship: RO:0002202 UBERON:0004291 ! develops from heart rudiment [Term] id: UBERON:0005501 name: rhombomere lateral wall is_a: UBERON:0005496 ! neural tube lateral wall intersection_of: UBERON:0005496 ! neural tube lateral wall intersection_of: BFO:0000050 UBERON:0001892 ! part of rhombomere relationship: BFO:0000050 UBERON:0001892 ! part of rhombomere [Term] id: UBERON:0005563 name: trigeminal neural crest is_a: UBERON:0003099 ! cranial neural crest is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007530 ! migrating mesenchyme population relationship: BFO:0000050 UBERON:0007213 ! part of mesenchyme derived from head neural crest property_value: IAO:0000116 "todo - compare ZFA and EHDAA2 representation" xsd:string [Term] id: UBERON:0005564 name: gonad primordium is_a: UBERON:0001048 ! primordium relationship: BFO:0000050 UBERON:0000990 ! part of reproductive system relationship: RO:0002387 UBERON:0000991 ! has potential to develop into gonad property_value: UBPROP:0000008 "this is a very broad grouping class" xsd:string [Term] id: UBERON:0005594 name: head somite is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002329 ! somite is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0002329 ! somite intersection_of: RO:0002202 UBERON:0009617 ! develops from head paraxial mesoderm relationship: BFO:0000050 UBERON:0009617 ! part of head paraxial mesoderm relationship: RO:0002202 UBERON:0009617 ! develops from head paraxial mesoderm property_value: UBPROP:0000008 "in humans this includes somites 1-4" xsd:string [Term] id: UBERON:0005597 name: lung primordium is_a: UBERON:0001048 ! primordium relationship: BFO:0000050 UBERON:0008947 ! part of respiratory primordium relationship: RO:0002202 UBERON:0001041 ! develops from foregut relationship: RO:0002387 UBERON:0000170 ! has potential to develop into pair of lungs [Term] id: UBERON:0005598 name: trunk somite is_a: UBERON:0002329 ! somite intersection_of: UBERON:0002329 ! somite intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0005602 name: dorsal mesogastrium is_a: UBERON:0003281 ! mesentery of stomach relationship: BFO:0000050 UBERON:0002296 ! part of dorsal mesentery relationship: BFO:0000050 UBERON:0003281 ! part of mesentery of stomach [Term] id: UBERON:0005604 name: extrahepatic part of hepatic duct is_a: UBERON:0002394 ! bile duct relationship: BFO:0000050 UBERON:0003703 ! part of extrahepatic bile duct relationship: BFO:0000050 UBERON:0005171 ! part of hepatic duct [Term] id: UBERON:0005610 name: iliac vein is_a: UBERON:0001638 ! vein relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0010708 ! drains pectoral complex [Term] id: UBERON:0005613 name: left dorsal aorta is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel relationship: BFO:0000050 UBERON:0005805 ! part of dorsal aorta [Term] id: UBERON:0005614 name: lens anterior epithelium is_a: UBERON:0001803 ! epithelium of lens intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000965 ! part of lens of camera-type eye intersection_of: RO:0002220 UBERON:0001804 ! adjacent to capsule of lens relationship: RO:0002220 UBERON:0000389 ! adjacent to lens cortex relationship: RO:0002220 UBERON:0001804 ! adjacent to capsule of lens property_value: UBPROP:0000010 "Cells of the subcapsular epithelium (or anterior lens cells) are mitotically active. In adult individuals they only cover the anterior 'hemisphere' of the lens. As they divide, cells gradually move towards the equator of the lens where they tranform into lens fibres. The apical part of the gradually elongating cell extends between the subcapsular epithelium and adjacent lens fibres towards the anterior pole of the lens. The basal part extends towards the posterior pole. The nucleus remains close to the equatorial plane of the lens - http://www.lab.anhb.uwa.edu.au/mb140/corepages/eye/eye.htm" xsd:string [Term] id: UBERON:0005616 name: mesenteric artery is_a: UBERON:0012254 ! abdominal aorta artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0000160 ! supplies intestine relationship: RO:0002178 UBERON:0000160 ! supplies intestine property_value: IAO:0000116 "includes posterior and anterior mesenteric arteries, which branch from the dorsal aorta (see Kardong), and superior and inferior mesenteric arteries" xsd:string [Term] id: UBERON:0005617 name: mesenteric vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0000160 ! drains intestine relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0000160 ! drains intestine property_value: UBPROP:0000008 "In humans the inferior mesenteric vein empties into the splenic vein, the superior mesenteric vein joins the splenic vein to form the portal vein" xsd:string [Term] id: UBERON:0005622 name: right dorsal aorta is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel relationship: BFO:0000050 UBERON:0005805 ! part of dorsal aorta [Term] id: UBERON:0005631 name: extraembryonic membrane is_a: UBERON:0000158 ! membranous layer relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-extraembryonic-membranes" xsd:anyURI property_value: UBPROP:0000008 "stuctures homologous to the four extraembryonic membranes appear in mammals [ISBN:0073040584 (Vertebrates, Kardong)]" xsd:string [Term] id: UBERON:0005637 name: pyloric region epithelium is_a: UBERON:0001276 ! epithelium of stomach intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus relationship: BFO:0000050 UBERON:0001166 ! part of pylorus [Term] id: UBERON:0005638 name: anterior chamber epithelium is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001766 ! part of anterior chamber of eyeball relationship: BFO:0000050 UBERON:0001766 ! part of anterior chamber of eyeball [Term] id: UBERON:0005656 name: lens vesicle epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0005426 ! part of lens vesicle relationship: BFO:0000050 UBERON:0005426 ! part of lens vesicle [Term] id: UBERON:0005660 name: 2nd arch ectoderm is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm intersection_of: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 relationship: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 [Term] id: UBERON:0005661 name: 3rd arch ectoderm is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm intersection_of: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 relationship: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 [Term] id: UBERON:0005662 name: 4th arch ectoderm is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm intersection_of: BFO:0000050 UBERON:0003115 ! part of pharyngeal arch 4 relationship: BFO:0000050 UBERON:0003115 ! part of pharyngeal arch 4 [Term] id: UBERON:0005664 name: 2nd arch endoderm is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm intersection_of: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 relationship: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 [Term] id: UBERON:0005665 name: 3rd arch endoderm is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm intersection_of: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 relationship: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 [Term] id: UBERON:0005666 name: 4th arch endoderm is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm intersection_of: BFO:0000050 UBERON:0003115 ! part of pharyngeal arch 4 relationship: BFO:0000050 UBERON:0003115 ! part of pharyngeal arch 4 [Term] id: UBERON:0005669 name: peritoneal cavity mesothelium is_a: UBERON:0001136 ! mesothelium intersection_of: UBERON:0001136 ! mesothelium intersection_of: RO:0001025 UBERON:0001179 ! located in peritoneal cavity relationship: RO:0001025 UBERON:0001179 ! located in peritoneal cavity [Term] id: UBERON:0005672 name: right lung endothelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003364 ! epithelium of right lung intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0005673 name: left lung endothelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003365 ! epithelium of left lung intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0005685 name: midgut dorsal mesentery is_a: UBERON:0002296 ! dorsal mesentery intersection_of: UBERON:0002296 ! dorsal mesentery intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut relationship: BFO:0000050 UBERON:0001045 ! part of midgut [Term] id: UBERON:0005688 name: lens vesicle cavity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0005426 ! luminal space of lens vesicle relationship: BFO:0000050 UBERON:0005426 ! part of lens vesicle relationship: RO:0002572 UBERON:0005426 ! luminal space of lens vesicle [Term] id: UBERON:0005689 name: 2nd arch mesenchyme is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 relationship: BFO:0000050 UBERON:0003066 ! part of pharyngeal arch 2 [Term] id: UBERON:0005690 name: 3rd arch mesenchyme is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 relationship: BFO:0000050 UBERON:0003114 ! part of pharyngeal arch 3 [Term] id: UBERON:0005691 name: 4th arch mesenchyme is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0003115 ! part of pharyngeal arch 4 relationship: BFO:0000050 UBERON:0003115 ! part of pharyngeal arch 4 [Term] id: UBERON:0005702 name: optic eminence mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0004348 ! part of optic eminence relationship: BFO:0000050 UBERON:0004348 ! part of optic eminence [Term] id: UBERON:0005711 name: foregut duodenum mesentery is_a: UBERON:0003397 ! mesentery of duodenum is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003397 ! mesentery of duodenum intersection_of: BFO:0000050 UBERON:0001041 ! part of foregut relationship: BFO:0000050 UBERON:0001041 ! part of foregut relationship: RO:0002202 UBERON:0011642 ! develops from oral epithelium from ectoderm [Term] id: UBERON:0005712 name: midgut duodenum mesentery is_a: UBERON:0003284 ! mesentery of midgut is_a: UBERON:0003397 ! mesentery of duodenum is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003397 ! mesentery of duodenum intersection_of: BFO:0000050 UBERON:0001045 ! part of midgut relationship: RO:0002202 UBERON:0011642 ! develops from oral epithelium from ectoderm [Term] id: UBERON:0005720 name: hindbrain venous system is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004582 ! venous system intersection_of: UBERON:0004582 ! venous system intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0005721 name: pronephric mesoderm comment: the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney is_a: UBERON:0000926 ! mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0000926 ! mesoderm intersection_of: RO:0002387 UBERON:0002120 ! has potential to develop into pronephros relationship: BFO:0000050 UBERON:0003064 ! part of intermediate mesoderm relationship: RO:0002202 UBERON:0007297 ! develops from presumptive pronephric mesoderm relationship: RO:0002387 UBERON:0002120 ! has potential to develop into pronephros relationship: RO:0002495 UBERON:0007297 ! immediate transformation of presumptive pronephric mesoderm [Term] id: UBERON:0005725 name: olfactory system is_a: UBERON:0005726 ! chemosensory system intersection_of: UBERON:0001032 ! sensory system intersection_of: RO:0002215 GO:0007608 ! capable of sensory perception of smell relationship: RO:0002215 GO:0007608 ! capable of sensory perception of smell relationship: RO:0002492 UBERON:0000066 ! existence ends during fully formed stage property_value: IAO:0000116 "consider splitting into main and accessory. See also: vomeronasal organ" xsd:string property_value: IAO:0000116 "we make the relationship to nervous system 'overlaps', as the olfactory system includes e.g. apertures in the cranium that are not part of the nervous system" xsd:string property_value: UBPROP:0000008 "In mammals, the main olfactory system detects odorants that are inhaled through the nose, where they contact the main olfactory epithelium, which contains various olfactory receptors. These olfactory receptors are membrane proteins of bipolar olfactory receptor neurons in the olfactory epithelium. Rather than binding specific ligands like most receptors, olfactory receptors display affinity for a range of odor molecules. Olfactory neurons transduce receptor activation into electrical signals in neurons. The signals travel along the olfactory nerve, which belongs to the peripheral nervous system. This nerve terminates in the olfactory bulb, which belongs to the central nervous system. The complex set of olfactory receptors on different olfactory neurons can distinguish a new odor from the background environmental odors and determine the concentration of the odor[WP]." xsd:string [Term] id: UBERON:0005726 name: chemosensory system is_a: UBERON:0001032 ! sensory system intersection_of: UBERON:0001032 ! sensory system intersection_of: RO:0002215 GO:0007606 ! capable of sensory perception of chemical stimulus relationship: RO:0002215 GO:0007606 ! capable of sensory perception of chemical stimulus [Term] id: UBERON:0005728 name: extraembryonic mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: RO:0002202 UBERON:0003081 ! develops from lateral plate mesoderm relationship: RO:0002202 UBERON:0008780 ! develops from inner cell mass derived epiblast [Term] id: UBERON:0005729 name: pectoral appendage field is_a: UBERON:0005732 ! paired limb/fin field is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0005732 ! paired limb/fin field intersection_of: RO:0002387 UBERON:0003413 ! has potential to develop into pectoral appendage bud mesenchyme relationship: RO:0002387 UBERON:0003413 ! has potential to develop into pectoral appendage bud mesenchyme [Term] id: UBERON:0005730 name: pelvic appendage field is_a: UBERON:0005732 ! paired limb/fin field is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0005732 ! paired limb/fin field intersection_of: RO:0002387 UBERON:0003412 ! has potential to develop into pelvic appendage bud mesenchyme relationship: RO:0002387 UBERON:0003412 ! has potential to develop into pelvic appendage bud mesenchyme [Term] id: UBERON:0005732 name: paired limb/fin field is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage intersection_of: UBERON:0007688 ! anlage intersection_of: RO:0002385 UBERON:0004357 ! has potential to developmentally contribute to paired limb/fin bud relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm relationship: RO:0002385 UBERON:0004357 ! has potential to developmentally contribute to paired limb/fin bud property_value: IAO:0000116 "we represent the field as being a part of the LPM (consistent with ZFA, Gilbert). As a consequence, the relationship between limb bud (with is ectoderm+mesenchyme) stands in a weaker has_developmental_contribution_from relation to the field - TODO implement this." xsd:string [Term] id: UBERON:0005733 name: limb field comment: the central portion of the limb field gives rise to the limb proper. mesenchyme cells proliferate from from the somatic layer of limb field lateral plate mesoderm (limb skeletal precursors) and from the somites (limb muscle precursors) . these mesenchymal cells accumulate under the ectedermal tissue to make a limb bud. // The lateral plate mesoderm in the limb field is also special in that it will induce myoblasts to migrate out from the somites and enter the limb bud. No other region of the lateral plate mesoderm will do that (Hayashi and Ozawa 1995) is_a: UBERON:0005732 ! paired limb/fin field intersection_of: UBERON:0005732 ! paired limb/fin field intersection_of: RO:0002385 UBERON:0004347 ! has potential to developmentally contribute to limb bud relationship: RO:0002385 UBERON:0004347 ! has potential to developmentally contribute to limb bud [Term] id: UBERON:0005734 name: tunica adventitia of blood vessel is_a: UBERON:0004797 ! blood vessel layer is_a: UBERON:0005742 ! adventitia relationship: RO:0000086 PATO:0002462 ! has quality collagenous relationship: RO:0002473 UBERON:0011824 ! composed primarily of fibrous connective tissue property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg" xsd:anyURI property_value: IAO:0000116 "TODO - note terminological problems. WP says tunica external layer of blood vessel. FMA says tunica externa = adventitia, and is FMA adventitia covers other kinds of vessels. Here we opt for a lengthier name that attempts to disambiguate. There is no precise FMA equivalent, as FMA has tunica externa of arteries, veins, genital ducts etc as siblings" xsd:string [Term] id: UBERON:0005740 name: tunica intima of artery is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0004797 ! blood vessel layer intersection_of: UBERON:0002523 ! tunica intima intersection_of: BFO:0000050 UBERON:0001637 ! part of artery relationship: BFO:0000050 UBERON:0000415 ! part of artery wall [Term] id: UBERON:0005742 name: adventitia is_a: UBERON:0004923 ! organ component layer relationship: RO:0002473 UBERON:0002384 ! composed primarily of connective tissue property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0005744 name: bone foramen is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element relationship: BFO:0000050 UBERON:0001474 ! part of bone element property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png" xsd:anyURI [Term] id: UBERON:0005753 name: caudal part of nephrogenic cord is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0004875 ! part of nephrogenic cord [Term] id: UBERON:0005754 name: rostral part of nephrogenic cord is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0004875 ! part of nephrogenic cord [Term] id: UBERON:0005764 name: acellular membrane is_a: UBERON:0000476 ! acellular anatomical structure intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: RO:0002007 UBERON:0000061 ! bounding layer of anatomical structure relationship: BFO:0000050 UBERON:0000061 ! part of anatomical structure relationship: RO:0002007 UBERON:0000061 ! bounding layer of anatomical structure property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0005769 name: basement membrane of epithelium is_a: UBERON:0005764 ! acellular membrane relationship: BFO:0000050 UBERON:0000483 ! part of epithelium relationship: BFO:0000051 GO:0005587 ! has part collagen type IV trimer relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa relationship: RO:0002473 GO:0005604 ! composed primarily of basement membrane property_value: IAO:0000232 "this class represents a continuous sheet of basement membrane which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'basal membrane' represents a portion of substance on the scale of a single cell." xsd:string [Term] id: UBERON:0005792 name: nephric ridge is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0001008 ! part of renal system relationship: BFO:0000050 UBERON:0004122 ! part of genitourinary system property_value: IAO:0000116 "TODO - check ridge vs cord vs nephrogenic cord vs blastema" xsd:string [Term] id: UBERON:0005800 name: section of aorta is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: BFO:0000050 UBERON:0000947 ! part of aorta [Term] id: UBERON:0005805 name: dorsal aorta is_a: UBERON:0000947 ! aorta is_a: UBERON:0003513 ! trunk blood vessel relationship: BFO:0000050 UBERON:0002201 ! part of vasculature of trunk relationship: RO:0002202 UBERON:0001917 ! develops from endothelium of artery relationship: RO:0002202 UBERON:0003064 ! develops from intermediate mesoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray459.png" xsd:anyURI [Term] id: UBERON:0005806 name: portal system is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0005856 name: developing mesenchymal condensation is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0011585 ! cell condensation [Term] id: UBERON:0005863 name: cartilaginous condensation is_a: UBERON:0005856 ! developing mesenchymal condensation relationship: BFO:0000050 UBERON:0004288 ! part of skeleton relationship: RO:0002202 UBERON:0005866 ! develops from pre-cartilage condensation [Term] id: UBERON:0005865 name: pre-muscle condensation is_a: UBERON:0005856 ! developing mesenchymal condensation relationship: RO:0002387 UBERON:0005090 ! has potential to develop into muscle structure [Term] id: UBERON:0005866 name: pre-cartilage condensation is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005856 ! developing mesenchymal condensation relationship: BFO:0000050 UBERON:0004288 ! part of skeleton relationship: RO:0002387 UBERON:0007844 ! has potential to develop into cartilage element [Term] id: UBERON:0005867 name: mandibular prominence is_a: UBERON:0012314 ! embryonic facial prominence relationship: BFO:0000050 UBERON:0000166 ! part of oral opening relationship: RO:0002202 UBERON:0007237 ! develops from 1st arch mandibular component property_value: IAO:0000116 "check develops_from" xsd:string [Term] id: UBERON:0005884 name: hyoid arch skeleton is_a: UBERON:0010912 ! subdivision of skeleton relationship: BFO:0000050 UBERON:0008895 ! part of splanchnocranium relationship: RO:0002202 UBERON:0003066 ! develops from pharyngeal arch 2 [Term] id: UBERON:0005902 name: occipital region is_a: UBERON:0034921 ! multi organ part structure relationship: BFO:0000050 UBERON:0003128 ! part of cranium property_value: IAO:0000116 "TODO - check" xsd:string [Term] id: UBERON:0005906 name: serous sac comment: See notes for serous membrane is_a: UBERON:0000062 ! organ relationship: BFO:0000051 UBERON:0000042 ! has part serous membrane relationship: BFO:0000051 UBERON:0002553 ! has part anatomical cavity [Term] id: UBERON:0005911 name: endo-epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000483 ! epithelium intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm [Term] id: UBERON:0005913 name: zone of bone organ is_a: UBERON:0034944 ! zone of organ relationship: BFO:0000050 UBERON:0001474 ! part of bone element relationship: RO:0002473 UBERON:0002481 ! composed primarily of bone tissue [Term] id: UBERON:0005944 name: axial skeleton plus cranial skeleton is_a: UBERON:0010912 ! subdivision of skeleton relationship: BFO:0000050 UBERON:0011137 ! part of axial skeletal system relationship: RO:0002170 UBERON:0002091 {gci_filler="NCBITaxon:7776", gci_relation="BFO:0000050"} ! connected to appendicular skeleton relationship: RO:0002202 UBERON:0003089 ! develops from sclerotome relationship: RO:0002433 UBERON:0001434 ! contributes to morphology of skeletal system property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/8/8b/Axial_skeleton_diagram.svg" xsd:anyURI property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] id: UBERON:0005946 name: outflow tract of atrium is_a: UBERON:0004145 ! outflow tract intersection_of: UBERON:0004145 ! outflow tract intersection_of: BFO:0000050 UBERON:0002081 ! part of cardiac atrium relationship: BFO:0000050 UBERON:0002081 ! part of cardiac atrium relationship: RO:0002150 UBERON:0002082 ! continuous with cardiac ventricle [Term] id: UBERON:0005953 name: outflow part of right ventricle is_a: UBERON:0005337 ! outflow tract of ventricle intersection_of: UBERON:0005337 ! outflow tract of ventricle intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: RO:0002150 UBERON:0002333 ! continuous with pulmonary trunk relationship: RO:0002202 UBERON:0009889 ! develops from secondary heart field [Term] id: UBERON:0005956 name: outflow part of left ventricle is_a: UBERON:0005337 ! outflow tract of ventricle intersection_of: UBERON:0005337 ! outflow tract of ventricle intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle [Term] id: UBERON:0005965 name: outflow part of right atrium is_a: UBERON:0005946 ! outflow tract of atrium intersection_of: UBERON:0005946 ! outflow tract of atrium intersection_of: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium relationship: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium [Term] id: UBERON:0005966 name: outflow part of left atrium is_a: UBERON:0005946 ! outflow tract of atrium intersection_of: UBERON:0005946 ! outflow tract of atrium intersection_of: BFO:0000050 UBERON:0002079 ! part of left cardiac atrium relationship: BFO:0000050 UBERON:0002079 ! part of left cardiac atrium [Term] id: UBERON:0005983 name: heart layer is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0000948 ! part of heart relationship: RO:0002433 UBERON:0000948 ! contributes to morphology of heart [Term] id: UBERON:0005985 name: coronary vessel is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000055 ! vessel intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0000948 ! part of heart relationship: RO:0002433 UBERON:0000948 ! contributes to morphology of heart property_value: IAO:0000116 "TODO - change relation from part_of" xsd:string [Term] id: UBERON:0005989 name: atrioventricular septum is_a: UBERON:0002099 ! cardiac septum is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002099 ! cardiac septum intersection_of: RO:0002220 UBERON:0002078 ! adjacent to right cardiac atrium intersection_of: RO:0002220 UBERON:0002084 ! adjacent to heart left ventricle relationship: RO:0002202 UBERON:0002062 ! develops from endocardial cushion relationship: RO:0002220 UBERON:0002078 ! adjacent to right cardiac atrium relationship: RO:0002220 UBERON:0002084 ! adjacent to heart left ventricle [Term] id: UBERON:0006002 name: vitelline artery comment: Development notes:; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult[MP:0010664] is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004365 ! vitelline blood vessel is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001040 ! supplies yolk sac relationship: BFO:0000050 UBERON:0005805 ! part of dorsal aorta relationship: RO:0002178 UBERON:0001040 ! supplies yolk sac relationship: RO:0002380 UBERON:0005805 ! branching part of dorsal aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png" xsd:anyURI [Term] id: UBERON:0006003 name: integumentary adnexa is_a: UBERON:0000064 ! organ part relationship: BFO:0000050 UBERON:0002416 ! part of integumental system property_value: IAO:0000116 "add subclasses based on resolution of CARO tracker item. Also check: adnexal gland. Note that MP implicitly includes hypodermis." xsd:string [Term] id: UBERON:0006056 name: posterior surface of head is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: BSPO:0000122 UBERON:0000033 ! head relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: BSPO:0000122 UBERON:0000033 ! head [Term] id: UBERON:0006170 name: mesonephric capsule is_a: UBERON:0002015 ! kidney capsule is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002015 ! kidney capsule intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0006207 name: aortico-pulmonary spiral septum is_a: UBERON:0004142 ! outflow tract septum is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002099 ! cardiac septum intersection_of: RO:0002220 UBERON:0002333 ! adjacent to pulmonary trunk intersection_of: RO:0002220 UBERON:0005805 ! adjacent to dorsal aorta relationship: RO:0002202 UBERON:0000095 ! develops from cardiac neural crest relationship: RO:0002220 UBERON:0002333 ! adjacent to pulmonary trunk relationship: RO:0002220 UBERON:0005805 ! adjacent to dorsal aorta property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray470.png" xsd:anyURI [Term] id: UBERON:0006211 name: buccopharyngeal membrane is_a: UBERON:0003037 ! septum relationship: BFO:0000050 UBERON:0000922 ! part of embryo relationship: BFO:0000050 UBERON:0006264 ! part of mouth-foregut junction relationship: RO:0002131 UBERON:0000930 ! overlaps stomodeum relationship: RO:0002131 UBERON:0001042 ! overlaps chordate pharynx relationship: RO:0002254 UBERON:0000924 ! has developmental contribution from ectoderm relationship: RO:0002254 UBERON:0000925 ! has developmental contribution from endoderm property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png" xsd:anyURI [Term] id: UBERON:0006217 name: cloacal membrane is_a: UBERON:0000158 ! membranous layer relationship: BFO:0000050 UBERON:0000163 ! part of embryonic cloaca relationship: RO:0002202 UBERON:0004341 ! develops from primitive streak relationship: RO:0002254 UBERON:0000924 ! has developmental contribution from ectoderm relationship: RO:0002254 UBERON:0000925 ! has developmental contribution from endoderm relationship: RO:0002433 UBERON:0000163 ! contributes to morphology of embryonic cloaca property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray991.png" xsd:anyURI [Term] id: UBERON:0006218 name: common atrial chamber is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0002081 ! part of cardiac atrium [Term] id: UBERON:0006235 name: foregut-midgut junction is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0001041 ! connects foregut intersection_of: RO:0002176 UBERON:0001045 ! connects midgut relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: RO:0002176 UBERON:0001041 ! connects foregut relationship: RO:0002176 UBERON:0001045 ! connects midgut [Term] id: UBERON:0006238 name: future brain is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000050 UBERON:0002346 ! part of neurectoderm relationship: RO:0002387 UBERON:0000955 ! has potential to develop into brain [Term] id: UBERON:0006241 name: future spinal cord is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: RO:0002387 UBERON:0001049 ! has potential to develop into neural tube relationship: RO:0002387 UBERON:0002240 ! has potential to develop into spinal cord [Term] id: UBERON:0006242 name: gallbladder primordium is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0001048 ! primordium intersection_of: RO:0002387 UBERON:0002110 ! has potential to develop into gallbladder relationship: BFO:0000050 UBERON:0004912 ! part of biliary bud relationship: RO:0002202 UBERON:0001152 ! develops from cystic duct relationship: RO:0002387 UBERON:0002110 ! has potential to develop into gallbladder [Term] id: UBERON:0006260 name: lingual swellings comment: the collection consisting of the two lateral swellings and the medial swelling is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0010188 ! protuberance relationship: BFO:0000050 UBERON:0010056 ! part of future tongue relationship: RO:0002202 UBERON:0004362 ! develops from pharyngeal arch 1 [Term] id: UBERON:0006264 name: mouth-foregut junction is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002131 UBERON:0000165 ! overlaps mouth intersection_of: RO:0002131 UBERON:0001041 ! overlaps foregut relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: RO:0002131 UBERON:0000165 ! overlaps mouth relationship: RO:0002131 UBERON:0001041 ! overlaps foregut [Term] id: UBERON:0006267 name: notochordal plate is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium relationship: RO:0002202 UBERON:0006268 ! develops from notochordal process property_value: IAO:0000116 "TODO - check ordering; awaiting confirmation from JB" xsd:string [Term] id: UBERON:0006268 name: notochordal process comment: The notochordal process grows cranially until it reaches the prechordal plate, the future site of the mouth. In this area the ectoderm is attached directly to the endoderm without intervening mesoderm. This area is known as the oropharyngeal membrane, and it will break down to become the mouth. At the other end of the primitive streak the ectoderm is also fused directly to the endoderm; this is known as the cloacal membrane (proctodeum), or primordial anus. is_a: UBERON:0005423 ! developing anatomical structure relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata relationship: RO:0002202 UBERON:0000924 ! develops from ectoderm [Term] id: UBERON:0006283 name: future cardiac ventricle comment: The embryonic ventricle or primitive ventricle of the developing heart gives rise to the trabeculated parts of the left and right ventricles. In contrast, the smooth parts of the left and right ventricles originate from the embryological bulbus cordis. The primitive ventricle becomes divided by a septum, the septum inferius or ventricular septum, which grows upward from the lower part of the ventricle, its position being indicated on the surface of the heart by a furrow. Its dorsal part increases more rapidly than its ventral portion, and fuses with the dorsal part of the septum intermedium. For a time an interventricular foramen exists above its ventral portion, but this foramen is ultimately closed by the fusion of the aortic septum with the ventricular septum[WP] is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000050 UBERON:0004141 ! part of heart tube relationship: BFO:0000050 UBERON:0005498 ! part of primitive heart tube relationship: RO:0002387 UBERON:0002082 ! has potential to develop into cardiac ventricle [Term] id: UBERON:0006293 name: spleen primordium is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0005602 ! part of dorsal mesogastrium relationship: RO:0002202 UBERON:0004872 ! develops from splanchnic layer of lateral plate mesoderm [Term] id: UBERON:0006304 name: future trigeminal ganglion comment: See: https://github.com/obophenotype/mouse-anatomy-ontology/issues/13 and https://github.com/obophenotype/uberon/issues/693 -- consider merging into trigeminal ganglion, as this complicates the model is_a: UBERON:0003869 ! presumptive ganglion relationship: RO:0002202 UBERON:0003070 ! develops from trigeminal placode complex relationship: RO:0002202 UBERON:0005563 ! develops from trigeminal neural crest relationship: RO:0002387 UBERON:0001675 ! has potential to develop into trigeminal ganglion relationship: RO:0002494 UBERON:0003070 ! transformation of trigeminal placode complex [Term] id: UBERON:0006311 name: chamber of eyeball is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000063 ! organ subunit intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye intersection_of: RO:0001015 UBERON:0006312 ! location of ocular refractive media relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: RO:0001015 UBERON:0006312 ! location of ocular refractive media [Term] id: UBERON:0006312 name: ocular refractive media is_a: UBERON:0000463 ! organism substance relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye property_value: UBPROP:0000009 "ocular refraction" xsd:string [Term] id: UBERON:0006314 name: bodily fluid is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0000086 PATO:0001548 ! has quality quality of a liquid relationship: RO:0000086 PATO:0001548 ! has quality quality of a liquid [Term] id: UBERON:0006331 name: brainstem nucleus is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: BFO:0000050 UBERON:0002298 ! part of brainstem relationship: BFO:0000050 UBERON:0002298 ! part of brainstem [Term] id: UBERON:0006347 name: communicating artery comment: Grouping for anterior and posterior is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002176 UBERON:0001637 {cardinality="2"} ! connects artery relationship: RO:0002176 UBERON:0001637 ! connects artery [Term] id: UBERON:0006355 name: superior vesical vein is_a: UBERON:0002460 ! vesical vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0000056 ! drains ureter relationship: RO:0002179 UBERON:0000056 ! drains ureter property_value: IAO:0000116 "inferred from artery" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006535 name: skin secretion is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0003001 UBERON:0000014 ! produced by zone of skin relationship: RO:0003001 UBERON:0000014 ! produced by zone of skin [Term] id: UBERON:0006537 name: female reproductive gland secretion is_a: UBERON:0022293 ! reproductive gland secretion intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0003001 UBERON:0005398 ! produced by female reproductive gland relationship: RO:0003001 UBERON:0005398 ! produced by female reproductive gland [Term] id: UBERON:0006538 name: respiratory system fluid/secretion is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0003001 UBERON:0001004 ! produced by respiratory system relationship: RO:0003001 UBERON:0001004 ! produced by respiratory system [Term] id: UBERON:0006544 name: kidney vasculature is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0002113 ! part of kidney property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006553 name: renal duct is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0006555 name: excretory tube is_a: UBERON:0000025 ! tube intersection_of: UBERON:0000025 ! tube intersection_of: BFO:0000050 UBERON:0001008 ! part of renal system relationship: BFO:0000050 UBERON:0001008 ! part of renal system [Term] id: UBERON:0006562 name: pharynx is_a: UBERON:0004921 ! subdivision of digestive tract relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria property_value: IAO:0000232 "currently this is an extremely generic class, encompassing both protostomes and deuterostomes." xsd:string property_value: IAO:0006012 "2023-04-20" xsd:string property_value: UBPROP:0000007 "branchial" xsd:string property_value: UBPROP:0000007 "pharyngeal" xsd:string [Term] id: UBERON:0006563 name: tunica media of pulmonary trunk is_a: UBERON:0007239 ! tunica media of artery intersection_of: UBERON:0002522 ! tunica media intersection_of: BFO:0000050 UBERON:0002333 ! part of pulmonary trunk relationship: BFO:0000050 UBERON:0002333 ! part of pulmonary trunk [Term] id: UBERON:0006565 name: female urethral meatus is_a: UBERON:0012240 ! urethral meatus intersection_of: UBERON:0012240 ! urethral meatus intersection_of: BFO:0000050 UBERON:0003100 ! part of female organism relationship: BFO:0000050 UBERON:0001334 ! part of female urethra [Term] id: UBERON:0006566 name: left ventricle myocardium is_a: UBERON:0001083 ! myocardium of ventricle intersection_of: UBERON:0001083 ! myocardium of ventricle intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle relationship: RO:0002150 UBERON:0003618 ! continuous with aorta tunica media property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006567 name: right ventricle myocardium is_a: UBERON:0001083 ! myocardium of ventricle intersection_of: UBERON:0001083 ! myocardium of ventricle intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: RO:0002150 UBERON:0006563 ! continuous with tunica media of pulmonary trunk property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006574 name: pectinate line is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:8410024 ! intestinal junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0000931 ! connects proctodeum intersection_of: RO:0002176 UBERON:0001046 ! connects hindgut relationship: BFO:0000050 UBERON:0000159 ! part of anal canal relationship: RO:0002176 UBERON:0000931 ! connects proctodeum relationship: RO:0002176 UBERON:0001046 ! connects hindgut property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/7b/Hemorrhoid.png" xsd:anyURI [Term] id: UBERON:0006585 name: vestibular organ is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0004681 ! part of vestibular system relationship: BFO:0000050 UBERON:0000012 ! part of somatic nervous system relationship: BFO:0000050 UBERON:0004681 ! part of vestibular system [Term] id: UBERON:0006595 name: presumptive endoderm is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: BFO:0000050 UBERON:0000307 ! part of blastula intersection_of: RO:0002387 UBERON:0000925 ! has potential to develop into endoderm relationship: BFO:0000050 UBERON:0000307 ! part of blastula relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002387 UBERON:0000925 ! has potential to develop into endoderm [Term] id: UBERON:0006596 name: presumptive blood is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0000178 ! has potential to develop into blood relationship: RO:0002387 UBERON:0000178 ! has potential to develop into blood [Term] id: UBERON:0006598 name: presumptive structure is_a: UBERON:0002050 ! embryonic structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo intersection_of: RO:0002387 UBERON:0000061 ! has potential to develop into anatomical structure relationship: RO:0002387 UBERON:0000061 ! has potential to develop into anatomical structure property_value: IAO:0000116 "Consider merging with anlage" xsd:string [Term] id: UBERON:0006601 name: presumptive ectoderm is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: BFO:0000050 UBERON:0000307 ! part of blastula intersection_of: RO:0002387 UBERON:0000924 ! has potential to develop into ectoderm relationship: BFO:0000050 UBERON:0000307 ! part of blastula relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002387 UBERON:0000924 ! has potential to develop into ectoderm [Term] id: UBERON:0006603 name: presumptive mesoderm is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: BFO:0000050 UBERON:0000307 ! part of blastula intersection_of: RO:0002387 UBERON:0000926 ! has potential to develop into mesoderm relationship: BFO:0000050 UBERON:0000307 ! part of blastula relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa relationship: RO:0002387 UBERON:0000926 ! has potential to develop into mesoderm [Term] id: UBERON:0006606 name: mandibular symphysis is_a: UBERON:0002216 ! symphysis intersection_of: UBERON:0002213 ! cartilaginous joint intersection_of: RO:0002176 UBERON:0004742 {cardinality="2"} ! connects dentary relationship: BFO:0000050 UBERON:0001710 ! part of lower jaw region relationship: RO:0002176 UBERON:0004742 ! connects dentary property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png" xsd:anyURI property_value: IAO:0000116 "this is placed as part of lower jaw region, as in this ontology the skeleton does not include joints" xsd:string [Term] id: UBERON:0006615 name: venous sinus is_a: UBERON:0003920 ! venous blood vessel property_value: IAO:0000116 "check if it is valid to group ZFA class here." xsd:string [Term] id: UBERON:0006660 name: muscular coat is_a: UBERON:0018260 ! layer of muscle tissue relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002220 UBERON:0000009 ! adjacent to submucosa property_value: IAO:0000116 "currently this class conflates a generic layer of muscle and a specific layer found lining the digestive tract (the muscularis externa), typically composed of circular and longitudinal layers (although this varies)" xsd:string property_value: RO:0002171 UBERON:0000009 property_value: RO:0002171 UBERON:0006676 property_value: UBPROP:0000008 "typically smooth muscle, but there may be exceptions - in the upper esophagus, part of the externa is skeletal muscle, rather than smooth muscle." xsd:string [Term] id: UBERON:0006668 name: carotid canal is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: RO:0002570 UBERON:0001532 ! conduit for internal carotid artery relationship: BFO:0000050 UBERON:0001678 ! part of temporal bone relationship: RO:0002570 UBERON:0001532 ! conduit for internal carotid artery property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4c/Gray141.png" xsd:anyURI [Term] id: UBERON:0006675 name: venous valve is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: BFO:0000050 UBERON:0001638 ! part of vein relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0006677 name: surface of epithelium is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: RO:0002007 UBERON:0000483 ! bounding layer of epithelium relationship: BFO:0000050 UBERON:0000483 ! part of epithelium relationship: RO:0002007 UBERON:0000483 ! bounding layer of epithelium [Term] id: UBERON:0006682 name: hypoglossal canal is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: RO:0002570 UBERON:0001650 ! conduit for hypoglossal nerve relationship: BFO:0000050 UBERON:0001676 ! part of occipital bone relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata relationship: RO:0002570 UBERON:0001650 ! conduit for hypoglossal nerve [Term] id: UBERON:0006756 name: median lingual swelling comment: The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview] is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0006260 ! part of lingual swellings relationship: RO:0002202 UBERON:0004362 ! develops from pharyngeal arch 1 property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png" xsd:anyURI [Term] id: UBERON:0006757 name: lateral lingual swelling is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0006260 ! part of lingual swellings relationship: RO:0002202 UBERON:0004362 ! develops from pharyngeal arch 1 property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png" xsd:anyURI property_value: UBPROP:0000010 "paired" xsd:string [Term] id: UBERON:0006761 name: corneo-scleral junction comment: This location has parts such as blood vessels etc. See PMC2868485, http://www.ncbi.nlm.nih.gov/pubmed/2695343 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0000964 ! connects cornea intersection_of: RO:0002176 UBERON:0001773 ! connects sclera relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: RO:0002176 UBERON:0000964 ! connects cornea relationship: RO:0002176 UBERON:0001773 ! connects sclera property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/3d/Limbus.png" xsd:anyURI [Term] id: UBERON:0006799 name: glandular epithelium is_a: UBERON:0000483 ! epithelium property_value: IAO:0000116 "consider splitting epithelium from epithelial tissue" xsd:string [Term] id: UBERON:0006815 name: areolar connective tissue is_a: UBERON:0011825 ! loose connective tissue relationship: BFO:0000050 UBERON:0000030 ! part of lamina propria relationship: protects UBERON:0000062 ! organ [Term] id: UBERON:0006833 name: lumen of trachea is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0003126 ! luminal space of trachea relationship: BFO:0000050 UBERON:0003126 ! part of trachea relationship: RO:0002572 UBERON:0003126 ! luminal space of trachea [Term] id: UBERON:0006834 name: uterus or analog is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: site_of GO:0009790 ! embryo development relationship: BFO:0000050 UBERON:0000474 ! part of female reproductive system relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa relationship: site_of GO:0009790 ! embryo development [Term] id: UBERON:0006846 name: surface groove comment: Surface groove is modelled as immaterial - see https://github.com/obophenotype/uberon/issues/2667 for discussion is_a: UBERON:0000466 ! immaterial anatomical entity relationship: RO:0000086 PATO:0002255 ! has quality grooved property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2667" xsd:string [Term] id: UBERON:0006855 name: muscular coat of ureter is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000050 UBERON:0009916 ! part of wall of ureter [Term] id: UBERON:0006866 name: terminal part of digestive tract is_a: UBERON:0004921 ! subdivision of digestive tract relationship: RO:0002150 UBERON:0001245 ! continuous with anus relationship: RO:0002202 UBERON:0001046 ! develops from hindgut property_value: IAO:0000232 "this class is the superclass of 'rectum', which is currently reserved for the vertebrate structure. May be merged in future." xsd:string [Term] id: UBERON:0006876 name: vasculature of organ is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0000062 ! part of organ relationship: BFO:0000050 UBERON:0000062 ! part of organ [Term] id: UBERON:0006877 name: vasculature of liver is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0002107 ! part of liver relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:0006904 name: head mesenchyme from mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0005253 ! head mesenchyme intersection_of: RO:0002202 UBERON:0000926 ! develops from mesoderm relationship: RO:0002202 UBERON:0003063 ! develops from prechordal plate property_value: IAO:0000116 "merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme" xsd:string [Term] id: UBERON:0006905 name: mandibular process mesenchyme is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005867 ! part of mandibular prominence relationship: BFO:0000050 UBERON:0005867 ! part of mandibular prominence [Term] id: UBERON:0006909 name: lumen of digestive tract is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0001555 ! luminal space of digestive tract relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: RO:0002572 UBERON:0001555 ! luminal space of digestive tract [Term] id: UBERON:0006913 name: lip epithelium is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001833 ! part of lip relationship: BFO:0000050 UBERON:0001833 ! part of lip [Term] id: UBERON:0006914 name: squamous epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0006915 name: stratified squamous epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0006914 ! squamous epithelium [Term] id: UBERON:0006916 name: non-keratinized epithelium of tongue is_a: UBERON:0006919 ! tongue squamous epithelium is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium intersection_of: UBERON:0010304 ! non-keratinized stratified squamous epithelium intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0006919 name: tongue squamous epithelium is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0003357 ! epithelium of tongue is_a: UBERON:0006914 ! squamous epithelium intersection_of: UBERON:0006914 ! squamous epithelium intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue relationship: BFO:0000050 UBERON:0005020 ! part of mucosa of tongue [Term] id: UBERON:0006920 name: esophagus squamous epithelium is_a: UBERON:0001976 ! epithelium of esophagus is_a: UBERON:0006914 ! squamous epithelium intersection_of: UBERON:0006914 ! squamous epithelium intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0006921 name: stomach squamous epithelium is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0001276 ! epithelium of stomach intersection_of: UBERON:0006914 ! squamous epithelium intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach [Term] id: UBERON:0006924 name: stomach glandular epithelium is_a: UBERON:0001276 ! epithelium of stomach is_a: UBERON:0006929 ! glandular columnar epithelium intersection_of: UBERON:0006799 ! glandular epithelium intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0006931 ! part of stomach glandular region mucosa relationship: BFO:0000051 UBERON:0000325 ! has part gastric gland property_value: IAO:0000116 "we follow Kardong in treating the glandular epithelium as a distinct entity, and thus as an epithelium which has glands; FMA has 'epithelium of gastric gland', which is part of the gastric gland." xsd:string [Term] id: UBERON:0006925 name: digestive system gland is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0002368 ! endocrine gland intersection_of: BFO:0000050 UBERON:0001007 ! part of digestive system [Term] id: UBERON:0006929 name: glandular columnar epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0006799 ! glandular epithelium [Term] id: UBERON:0006931 name: stomach glandular region mucosa is_a: UBERON:0001199 ! mucosa of stomach intersection_of: UBERON:0001199 ! mucosa of stomach intersection_of: BFO:0000050 UBERON:0011953 ! part of stomach glandular region relationship: BFO:0000050 UBERON:0011953 ! part of stomach glandular region [Term] id: UBERON:0006934 name: sensory epithelium is_a: UBERON:0000488 ! atypical epithelium relationship: BFO:0000050 UBERON:0000010 ! part of peripheral nervous system [Term] id: UBERON:0006960 name: ovary stroma is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003891 ! stroma intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary relationship: BFO:0000050 UBERON:0000992 ! part of ovary property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0006965 name: vascular cord is_a: UBERON:0005423 ! developing anatomical structure relationship: BFO:0000050 UBERON:0014903 ! part of primordial vasculature relationship: site_of GO:0048754 ! branching morphogenesis of an epithelial tube [Term] id: UBERON:0006966 name: coronary capillary is_a: UBERON:0001982 ! capillary is_a: UBERON:0003498 ! heart blood vessel intersection_of: UBERON:0001982 ! capillary intersection_of: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0006984 name: anatomical surface comment: Old definition: 'Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures.' Note, in the new definition, the space referred to is not necessarily an anatomical space. It may be the outside of an organism. is_a: UBERON:0010199 ! bona-fide anatomical boundary [Term] id: UBERON:0007005 name: cardiogenic splanchnic mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0004140 ! part of primary heart field relationship: BFO:0000050 UBERON:0009881 ! part of anterior lateral plate mesoderm relationship: RO:0002202 UBERON:0004872 ! develops from splanchnic layer of lateral plate mesoderm relationship: RO:0002256 UBERON:0009881 ! developmentally induced by anterior lateral plate mesoderm property_value: IAO:0000116 "consider FBbt:00005541 ! cardiogenic mesoderm" xsd:string property_value: IAO:0000116 "review EHDAA2 placement" xsd:string [Term] id: UBERON:0007010 name: cleaving embryo is_a: UBERON:0000922 ! embryo intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002489 UBERON:0000107 ! existence starts with cleavage stage intersection_of: RO:0002493 UBERON:0000107 ! existence ends with cleavage stage relationship: RO:0002489 UBERON:0000107 ! existence starts with cleavage stage relationship: RO:0002493 UBERON:0000107 ! existence ends with cleavage stage [Term] id: UBERON:0007026 name: presumptive gut is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0001555 ! has potential to develop into digestive tract relationship: RO:0002254 UBERON:0000925 ! has developmental contribution from endoderm relationship: RO:0002254 UBERON:0000926 ! has developmental contribution from mesoderm relationship: RO:0002387 UBERON:0001555 ! has potential to develop into digestive tract relationship: RO:0002488 UBERON:0000109 ! existence starts during gastrula stage [Term] id: UBERON:0007037 name: mechanosensory system is_a: UBERON:0001032 ! sensory system intersection_of: UBERON:0001032 ! sensory system intersection_of: RO:0002215 GO:0050954 ! capable of sensory perception of mechanical stimulus relationship: RO:0002215 GO:0050954 ! capable of sensory perception of mechanical stimulus [Term] id: UBERON:0007098 name: mandibular neural crest is_a: UBERON:0003099 ! cranial neural crest relationship: BFO:0000050 UBERON:0003852 ! part of rhombencephalon neural crest [Term] id: UBERON:0007099 name: hyoid neural crest is_a: UBERON:0003099 ! cranial neural crest relationship: BFO:0000050 UBERON:0003852 ! part of rhombencephalon neural crest [Term] id: UBERON:0007100 name: primary circulatory organ comment: Gene notes: Bmp, Nkx, Gata is_a: UBERON:0015228 ! circulatory organ intersection_of: UBERON:0015228 ! circulatory organ intersection_of: RO:0002215 GO:0008015 ! capable of blood circulation relationship: RO:0002215 GO:0008015 ! capable of blood circulation property_value: UBPROP:0000008 "note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. 'The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian'. Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis" xsd:string [Term] id: UBERON:0007122 name: pharyngeal pouch 1 is_a: UBERON:0004117 ! pharyngeal pouch intersection_of: UBERON:0004117 ! pharyngeal pouch intersection_of: RO:0002131 UBERON:0003066 ! overlaps pharyngeal arch 2 intersection_of: RO:0002131 UBERON:0004362 ! overlaps pharyngeal arch 1 relationship: RO:0002131 UBERON:0003066 ! overlaps pharyngeal arch 2 relationship: RO:0002131 UBERON:0004362 ! overlaps pharyngeal arch 1 [Term] id: UBERON:0007123 name: pharyngeal pouch 2 is_a: UBERON:0004117 ! pharyngeal pouch intersection_of: UBERON:0004117 ! pharyngeal pouch intersection_of: RO:0002131 UBERON:0003066 ! overlaps pharyngeal arch 2 intersection_of: RO:0002131 UBERON:0003114 ! overlaps pharyngeal arch 3 relationship: RO:0002131 UBERON:0003066 ! overlaps pharyngeal arch 2 relationship: RO:0002131 UBERON:0003114 ! overlaps pharyngeal arch 3 property_value: UBPROP:0000008 "the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract." xsd:string [Term] id: UBERON:0007124 name: pharyngeal pouch 3 is_a: UBERON:0004117 ! pharyngeal pouch intersection_of: UBERON:0004117 ! pharyngeal pouch intersection_of: RO:0002131 UBERON:0003114 ! overlaps pharyngeal arch 3 intersection_of: RO:0002131 UBERON:0003115 ! overlaps pharyngeal arch 4 relationship: RO:0002131 UBERON:0003114 ! overlaps pharyngeal arch 3 relationship: RO:0002131 UBERON:0003115 ! overlaps pharyngeal arch 4 [Term] id: UBERON:0007134 name: trunk ganglion is_a: UBERON:0000045 ! ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0007135 name: neural keel is_a: UBERON:0016879 ! future central nervous system relationship: RO:0002202 UBERON:0003075 ! develops from neural plate [Term] id: UBERON:0007147 name: lumen of midgut is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0001045 ! luminal space of midgut relationship: BFO:0000050 UBERON:0001045 ! part of midgut relationship: RO:0002572 UBERON:0001045 ! luminal space of midgut [Term] id: UBERON:0007148 name: lumen of hindgut is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0001046 ! luminal space of hindgut relationship: BFO:0000050 UBERON:0001046 ! part of hindgut relationship: RO:0002572 UBERON:0001046 ! luminal space of hindgut [Term] id: UBERON:0007158 name: lumen of anal canal is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000159 ! luminal space of anal canal relationship: BFO:0000050 UBERON:0000159 ! part of anal canal relationship: RO:0002572 UBERON:0000159 ! luminal space of anal canal [Term] id: UBERON:0007159 name: lumen of colon is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0001155 ! luminal space of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon relationship: RO:0002572 UBERON:0001155 ! luminal space of colon [Term] id: UBERON:0007160 name: inferior petrosal sinus is_a: UBERON:0017635 ! paired venous dural sinus relationship: RO:0002170 UBERON:0001586 ! connected to internal jugular vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007177 name: lamina propria of mucosa of colon is_a: UBERON:0011189 ! lamina propria of large intestine intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0000317 ! part of colonic mucosa relationship: BFO:0000050 UBERON:0000317 ! part of colonic mucosa property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007188 name: mesothelium of serous pericardium is_a: UBERON:0003388 ! mesothelium of pericardial cavity intersection_of: UBERON:0001136 ! mesothelium intersection_of: BFO:0000050 UBERON:0002357 ! part of serous pericardium relationship: BFO:0000050 UBERON:0002357 ! part of serous pericardium [Term] id: UBERON:0007196 name: tracheobronchial tree is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! endoderm-derived structure relationship: BFO:0000050 UBERON:0001558 ! part of lower respiratory tract relationship: BFO:0000051 UBERON:0002185 ! has part bronchus relationship: BFO:0000051 UBERON:0003126 ! has part trachea relationship: BFO:0000051 UBERON:0007592 ! has part ciliated columnar epithelium property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007204 name: brachiocephalic vasculature is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0007213 name: mesenchyme derived from head neural crest is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002202 UBERON:0003099 ! develops from cranial neural crest relationship: RO:0002202 UBERON:0003099 ! develops from cranial neural crest [Term] id: UBERON:0007214 name: mesenchyme derived from trunk neural crest is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002202 UBERON:0003083 ! develops from trunk neural crest relationship: RO:0002202 UBERON:0003083 ! develops from trunk neural crest [Term] id: UBERON:0007237 name: 1st arch mandibular component is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 property_value: IAO:0000116 "relationship to Meckel's cartilage to be added" xsd:string [Term] id: UBERON:0007239 name: tunica media of artery is_a: UBERON:0002522 ! tunica media intersection_of: UBERON:0002522 ! tunica media intersection_of: BFO:0000050 UBERON:0001637 ! part of artery relationship: BFO:0000050 UBERON:0000415 ! part of artery wall [Term] id: UBERON:0007240 name: tunica adventitia of artery is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: BFO:0000050 UBERON:0001637 ! part of artery relationship: BFO:0000050 UBERON:0000415 ! part of artery wall [Term] id: UBERON:0007241 name: tunica adventitia of vein is_a: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel intersection_of: BFO:0000050 UBERON:0001638 ! part of vein relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0007242 name: tunica intima of vein is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0004797 ! blood vessel layer intersection_of: UBERON:0002523 ! tunica intima intersection_of: BFO:0000050 UBERON:0001638 ! part of vein relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0007243 name: tunica media of vein is_a: UBERON:0002522 ! tunica media intersection_of: UBERON:0002522 ! tunica media intersection_of: BFO:0000050 UBERON:0001638 ! part of vein relationship: BFO:0000050 UBERON:0001638 ! part of vein [Term] id: UBERON:0007245 name: nuclear complex of neuraxis is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: RO:0002473 UBERON:0000125 ! composed primarily of neural nucleus relationship: RO:0002473 UBERON:0000125 ! composed primarily of neural nucleus [Term] id: UBERON:0007247 name: nucleus of superior olivary complex is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: BFO:0000050 UBERON:0002128 ! part of superior olivary complex relationship: BFO:0000050 UBERON:0002128 ! part of superior olivary complex property_value: IAO:0000232 "this class exists largely for consistency with the FMA. It is defined trivially with respect to the SOC. The class may be removed in future." xsd:string [Term] id: UBERON:0007267 name: trachea pre-cartilage rings is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0009505 ! mesenchyme of trachea intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: RO:0002202 UBERON:0009505 ! develops from mesenchyme of trachea [Term] id: UBERON:0007269 name: pectoral appendage musculature is_a: UBERON:0007271 ! appendage musculature is_a: UBERON:0014793 ! musculature of pectoral complex intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage relationship: BFO:0000050 UBERON:0004710 ! part of pectoral appendage property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0007270 name: pelvic appendage musculature is_a: UBERON:0007271 ! appendage musculature is_a: UBERON:0014792 ! musculature of pelvic complex intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0004709 ! part of pelvic appendage relationship: BFO:0000050 UBERON:0004709 ! part of pelvic appendage property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0007271 name: appendage musculature is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0000026 ! part of appendage relationship: BFO:0000050 UBERON:0000026 ! part of appendage property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0007272 name: pectoral appendage skeleton is_a: UBERON:0011582 ! paired limb/fin skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0004710 ! skeleton of pectoral appendage relationship: BFO:0000050 UBERON:0004710 ! part of pectoral appendage relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002576 UBERON:0004710 ! skeleton of pectoral appendage property_value: RO:0002475 UBERON:0007273 [Term] id: UBERON:0007273 name: pelvic appendage skeleton is_a: UBERON:0011582 ! paired limb/fin skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0004709 ! skeleton of pelvic appendage relationship: BFO:0000050 UBERON:0004709 ! part of pelvic appendage relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002576 UBERON:0004709 ! skeleton of pelvic appendage [Term] id: UBERON:0007277 name: presumptive hindbrain is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0002028 ! has potential to develop into hindbrain relationship: BFO:0000050 UBERON:0006238 ! part of future brain relationship: RO:0002202 UBERON:0003076 ! develops from posterior neural tube relationship: RO:0002254 UBERON:0003852 ! has developmental contribution from rhombencephalon neural crest relationship: RO:0002387 UBERON:0002028 ! has potential to develop into hindbrain property_value: IAO:0000116 "TODO - unify naming conventions" xsd:string [Term] id: UBERON:0007278 name: presumptive sinus venosus is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0002063 ! has potential to develop into sinus venosus relationship: BFO:0000050 UBERON:0004141 ! part of heart tube relationship: RO:0002387 UBERON:0002063 ! has potential to develop into sinus venosus [Term] id: UBERON:0007280 name: presumptive endocardium is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0002165 ! has potential to develop into endocardium relationship: BFO:0000050 UBERON:0005498 ! part of primitive heart tube relationship: RO:0002202 UBERON:0003084 ! develops from heart primordium relationship: RO:0002387 UBERON:0002165 ! has potential to develop into endocardium [Term] id: UBERON:0007281 name: presumptive midbrain hindbrain boundary is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0003052 ! has potential to develop into midbrain-hindbrain boundary relationship: BFO:0000050 UBERON:0006238 ! part of future brain relationship: RO:0002387 UBERON:0003052 ! has potential to develop into midbrain-hindbrain boundary [Term] id: UBERON:0007282 name: presumptive segmental plate is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0003059 ! has potential to develop into presomitic mesoderm relationship: RO:0002202 UBERON:0009618 ! develops from trunk paraxial mesoderm relationship: RO:0002387 UBERON:0003059 ! has potential to develop into presomitic mesoderm [Term] id: UBERON:0007284 name: presumptive neural plate is_a: UBERON:0016879 ! future central nervous system intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0003075 ! has potential to develop into neural plate relationship: BFO:0000050 UBERON:0004734 ! part of gastrula relationship: RO:0002202 UBERON:0002346 ! develops from neurectoderm relationship: RO:0002387 UBERON:0003075 ! has potential to develop into neural plate property_value: IAO:0000116 "consider merging" xsd:string [Term] id: UBERON:0007285 name: presumptive paraxial mesoderm is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000050 UBERON:0000307 ! part of blastula relationship: RO:0002387 UBERON:0003077 ! has potential to develop into paraxial mesoderm [Term] id: UBERON:0007297 name: presumptive pronephric mesoderm is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0005721 ! has potential to develop into pronephric mesoderm relationship: RO:0002387 UBERON:0005721 ! has potential to develop into pronephric mesoderm [Term] id: UBERON:0007300 name: pectoral appendage blood vessel is_a: UBERON:0007301 ! appendage blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage relationship: BFO:0000050 UBERON:0004710 ! part of pectoral appendage [Term] id: UBERON:0007301 name: appendage blood vessel is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0000026 ! part of appendage relationship: BFO:0000050 UBERON:0007304 ! part of appendage vasculature [Term] id: UBERON:0007302 name: pectoral appendage vasculature is_a: UBERON:0007304 ! appendage vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage relationship: BFO:0000050 UBERON:0004710 ! part of pectoral appendage [Term] id: UBERON:0007303 name: pharyngeal vasculature is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx relationship: BFO:0000050 UBERON:0001042 ! part of chordate pharynx [Term] id: UBERON:0007304 name: appendage vasculature is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0000026 ! part of appendage relationship: BFO:0000050 UBERON:0000026 ! part of appendage [Term] id: UBERON:0007324 name: pancreatic lobule is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure relationship: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas relationship: BFO:0000051 UBERON:0001263 ! has part pancreatic acinus relationship: BFO:0000051 UBERON:0014719 ! has part intralobular duct property_value: IAO:0000116 "TODO - check" xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "In mice many lobules lack islets, in contrast to other mammals including humans" xsd:string [Term] id: UBERON:0007329 name: pancreatic duct is_a: UBERON:0003928 ! digestive system duct is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas intersection_of: RO:0002170 UBERON:0000160 ! connected to intestine relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas relationship: RO:0002170 UBERON:0000160 ! connected to intestine relationship: RO:0002202 UBERON:0003922 ! develops from pancreatic epithelial bud relationship: RO:0002433 UBERON:0000017 ! contributes to morphology of exocrine pancreas property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png" xsd:anyURI property_value: IAO:0000232 "this class groups together accessory (dorsal) and main (ventral) pancreatic ducts" xsd:string property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0007367 name: surface of tongue is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: RO:0002007 UBERON:0001723 ! bounding layer of tongue relationship: BFO:0000050 UBERON:0001723 ! part of tongue relationship: RO:0002007 UBERON:0001723 ! bounding layer of tongue [Term] id: UBERON:0007376 name: outer epithelium is_a: UBERON:0003102 ! surface structure is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: RO:0002007 UBERON:0000468 ! bounding layer of multicellular organism intersection_of: RO:0002202 UBERON:0007383 ! develops from enveloping layer of ectoderm relationship: RO:0002007 UBERON:0000468 ! bounding layer of multicellular organism relationship: RO:0002202 UBERON:0007383 ! develops from enveloping layer of ectoderm property_value: IAO:0000116 "this grouping class exists primarily to align with GO - see GO:0008544." xsd:string [Term] id: UBERON:0007383 name: enveloping layer of ectoderm is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium relationship: RO:0002007 UBERON:0000922 ! bounding layer of embryo relationship: RO:0002202 UBERON:0000076 ! develops from external ectoderm property_value: UBPROP:0000008 "Originally this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm." xsd:string [Term] id: UBERON:0007389 name: paired limb/fin cartilage is_a: UBERON:0002418 ! cartilage tissue intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: BFO:0000050 UBERON:0004708 ! part of paired limb/fin relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton relationship: BFO:0000050 UBERON:0004708 ! part of paired limb/fin [Term] id: UBERON:0007390 name: pectoral appendage cartilage tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007389 ! paired limb/fin cartilage intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage relationship: BFO:0000050 UBERON:0007272 ! part of pectoral appendage skeleton relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: UBERON:0007391 name: pelvic appendage cartilage tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007389 ! paired limb/fin cartilage intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: BFO:0000050 UBERON:0004709 ! part of pelvic appendage relationship: BFO:0000050 UBERON:0007273 ! part of pelvic appendage skeleton relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: UBERON:0007414 name: nucleus of midbrain tegmentum is_a: UBERON:0000125 ! neural nucleus intersection_of: UBERON:0000125 ! neural nucleus intersection_of: RO:0002131 UBERON:0001943 ! overlaps midbrain tegmentum relationship: RO:0002131 UBERON:0001943 ! overlaps midbrain tegmentum property_value: IAO:0000232 "this class groups together any nuclei in the tegmentum region, possibly including disparate structures across species" xsd:string [Term] id: UBERON:0007473 name: lumen of epithelial sac is_a: UBERON:0012467 ! enclosed anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0007499 ! luminal space of epithelial sac relationship: BFO:0000050 UBERON:0007499 ! part of epithelial sac relationship: RO:0002572 UBERON:0007499 ! luminal space of epithelial sac [Term] id: UBERON:0007475 name: matrix-based tissue is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue intersection_of: RO:0002473 GO:0031012 ! composed primarily of extracellular matrix relationship: RO:0002473 GO:0031012 ! composed primarily of extracellular matrix [Term] id: UBERON:0007499 name: epithelial sac is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0009856 ! sac intersection_of: UBERON:0000483 ! epithelium intersection_of: RO:0000086 PATO:0001987 ! has quality saccular [Term] id: UBERON:0007500 name: epithelial tube open at both ends is_a: UBERON:0003914 ! epithelial tube [Term] id: UBERON:0007501 name: arborizing epithelial duct system is_a: UBERON:0007499 ! epithelial sac relationship: BFO:0000051 UBERON:0003914 ! has part epithelial tube [Term] id: UBERON:0007503 name: epithelial vesicle is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0007521 name: smooth muscle sphincter is_a: UBERON:0004590 ! sphincter muscle relationship: RO:0002473 UBERON:0001135 ! composed primarily of smooth muscle tissue [Term] id: UBERON:0007524 name: dense mesenchyme tissue is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0007530 name: migrating mesenchyme population is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0000056 GO:0016477 ! participates in cell migration relationship: RO:0000056 GO:0016477 ! participates in cell migration property_value: IAO:0000116 "this class will be an important part of the NC reorganization" xsd:string [Term] id: UBERON:0007592 name: ciliated columnar epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0007601 ! ciliated epithelium property_value: UBPROP:0000008 "In humans, Ciliated columnar epithelial cells are found mainly in the tracheal and bronchial regions of the pulmonary system and also in the fallopian tubes of the female reproductive system" xsd:string property_value: UBPROP:0000009 "Ciliated columnar epithelium in the pulmonary system is interspersed with goblet cells that secrete mucous to form a mucosal layer apical to the epithelial layer. The rowing-like action of epithelial cilia work in tandem with goblet cells to propel mucus away from the lungs, preventing particulate matter from causing infection[http://www.bio.davidson.edu/people/kabernd/berndcv/lab/epithelialinfoweb/ciliated%20columnar%20epithelium.html]" xsd:string [Term] id: UBERON:0007601 name: ciliated epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0007616 name: layer of synovial tissue is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: RO:0003000 UBERON:0001090 ! produces synovial fluid relationship: RO:0002473 UBERON:0002384 ! composed primarily of connective tissue relationship: RO:0003000 UBERON:0001090 ! produces synovial fluid [Term] id: UBERON:0007617 name: synovial cavity of joint is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0002217 ! luminal space of synovial joint relationship: BFO:0000050 UBERON:0002217 ! part of synovial joint relationship: RO:0002572 UBERON:0002217 ! luminal space of synovial joint [Term] id: UBERON:0007625 name: pigment epithelium of eye is_a: UBERON:0019304 ! sensory organ epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000970 ! part of eye relationship: BFO:0000050 UBERON:0000970 ! part of eye [Term] id: UBERON:0007635 name: nucleus of medulla oblongata is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus intersection_of: UBERON:0000125 ! neural nucleus intersection_of: BFO:0000050 UBERON:0001896 ! part of medulla oblongata relationship: BFO:0000050 UBERON:0001896 ! part of medulla oblongata [Term] id: UBERON:0007641 name: trigeminal nuclear complex is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: BFO:0000050 RO:0002577 ! part of system relationship: extends_fibers_into UBERON:0001645 ! trigeminal nerve relationship: RO:0002131 UBERON:0003023 ! overlaps pontine tegmentum property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png" xsd:anyURI [Term] id: UBERON:0007645 name: future meninx is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0002360 ! has potential to develop into meninx relationship: BFO:0000050 UBERON:0010743 ! part of meningeal cluster relationship: RO:0002254 UBERON:0007213 ! has developmental contribution from mesenchyme derived from head neural crest relationship: RO:0002387 UBERON:0002360 ! has potential to develop into meninx property_value: IAO:0000116 "decide whether to treat the endo and ecto meninx as subtypes or parts of the future meninx" xsd:string [Term] id: UBERON:0007647 name: ectomeninx is_a: UBERON:0007645 ! future meninx intersection_of: UBERON:0007645 ! future meninx intersection_of: RO:0002387 UBERON:0002363 ! has potential to develop into dura mater relationship: RO:0002202 UBERON:0009617 ! develops from head paraxial mesoderm relationship: RO:0002387 UBERON:0002363 ! has potential to develop into dura mater [Term] id: UBERON:0007651 name: anatomical junction is_a: UBERON:0000061 ! anatomical structure relationship: RO:0002176 UBERON:0000061 {minCardinality="2"} ! connects anatomical structure property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0007652 name: esophageal sphincter is_a: UBERON:0003832 ! esophagus muscle is_a: UBERON:0004590 ! sphincter muscle intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus property_value: IAO:0000116 "check for specific subtypes across species. Note mammals have upper and lower, but lower is really part of cardia and thus is not classified under here" xsd:string [Term] id: UBERON:0007684 name: uriniferous tubule is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube relationship: BFO:0000051 UBERON:0001232 ! has part collecting duct of renal tubule relationship: BFO:0000051 UBERON:0001285 ! has part nephron [Term] id: UBERON:0007687 name: kidney field is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007688 ! anlage intersection_of: UBERON:0007688 ! anlage intersection_of: RO:0002387 UBERON:0002113 ! has potential to develop into kidney relationship: RO:0002387 UBERON:0002113 ! has potential to develop into kidney [Term] id: UBERON:0007688 name: anlage is_a: UBERON:0000479 ! tissue is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0007690 name: early pharyngeal endoderm comment: relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm' is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0009722 ! part of entire pharyngeal arch endoderm [Term] id: UBERON:0007691 name: gustatory pore is_a: UBERON:0000161 ! orifice is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000161 ! orifice intersection_of: BFO:0000050 UBERON:0001727 ! part of taste bud relationship: BFO:0000050 UBERON:0001727 ! part of taste bud relationship: RO:0002150 UBERON:0000167 ! continuous with oral cavity property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg" xsd:anyURI [Term] id: UBERON:0007719 name: bone of reproductive organ is_a: UBERON:0001474 ! bone element is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0003133 ! part of reproductive organ relationship: BFO:0000050 UBERON:0003133 ! part of reproductive organ [Term] id: UBERON:0007771 name: epidermis gland is_a: UBERON:0002419 ! skin gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0001003 ! part of skin epidermis relationship: BFO:0000050 UBERON:0001003 ! part of skin epidermis [Term] id: UBERON:0007779 name: transudate is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0000463 ! organism substance intersection_of: filtered_through UBERON:0001982 ! capillary intersection_of: RO:0000086 PATO:0001548 ! has quality quality of a liquid intersection_of: RO:0002494 UBERON:0001969 ! transformation of blood plasma relationship: filtered_through UBERON:0001982 ! capillary relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002202 UBERON:0001969 ! develops from blood plasma relationship: RO:0002494 UBERON:0001969 ! transformation of blood plasma property_value: UBPROP:0000007 "transudative" xsd:string property_value: UBPROP:0000010 "characteristically low in protein and cellular content (unless there has been secondary concentration)" xsd:string [Term] id: UBERON:0007794 name: secretion of serous gland is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0006314 ! bodily fluid intersection_of: RO:0003001 UBERON:0000409 ! produced by serous gland relationship: RO:0003001 UBERON:0000409 ! produced by serous gland [Term] id: UBERON:0007798 name: vascular system is_a: UBERON:0000467 ! anatomical system relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system property_value: IAO:0000116 "consider merging with vasculature" xsd:string [Term] id: UBERON:0007808 name: adipose tissue of abdominal region is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0003567 ! abdomen connective tissue intersection_of: UBERON:0001013 ! adipose tissue intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0007811 name: craniocervical region is_a: UBERON:0000475 ! organism subdivision relationship: BFO:0000050 UBERON:0000153 ! part of anterior region of body relationship: BFO:0000050 UBERON:0013702 ! part of body proper relationship: BFO:0000051 UBERON:0000033 ! has part head relationship: BFO:0000051 UBERON:0000974 {gci_filler="NCBITaxon:32523", gci_relation="BFO:0000050"} ! has part neck relationship: BFO:0000051 UBERON:0006562 ! has part pharynx [Term] id: UBERON:0007823 name: appendage girdle region is_a: UBERON:0000475 ! organism subdivision intersection_of: UBERON:0000475 ! organism subdivision intersection_of: RO:0002551 UBERON:0010719 ! has skeleton girdle skeleton relationship: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002551 UBERON:0010719 ! has skeleton girdle skeleton property_value: IAO:0000232 "this encompasses non-skeletal tissue" xsd:string [Term] id: UBERON:0007826 name: peritoneal mesentery is_a: UBERON:0002095 ! mesentery is_a: UBERON:0002358 ! peritoneum intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0002358 ! part of peritoneum relationship: BFO:0000050 UBERON:0001178 ! part of visceral peritoneum [Term] id: UBERON:0007828 name: girdle bone/zone is_a: UBERON:0010740 ! bone of appendage girdle complex intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0007823 ! part of appendage girdle region relationship: BFO:0000050 UBERON:0010719 ! part of girdle skeleton [Term] id: UBERON:0007829 name: pectoral girdle bone is_a: UBERON:0007828 ! girdle bone/zone is_a: UBERON:0010741 ! bone of pectoral complex intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region relationship: BFO:0000050 UBERON:0007831 ! part of pectoral girdle skeleton [Term] id: UBERON:0007830 name: pelvic girdle bone/zone is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007828 ! girdle bone/zone is_a: UBERON:0010742 ! bone of pelvic complex intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0007832 ! part of pelvic girdle skeleton relationship: BFO:0000050 UBERON:0007832 ! part of pelvic girdle skeleton property_value: IAO:0000116 "check sacrum, coccyx (MA does NOT include these)" xsd:string property_value: UBPROP:0000008 "typically the ilium, ischium and pubis. These can alternately be considered individual bones, or zones of a single fused bone" xsd:string [Term] id: UBERON:0007831 name: pectoral girdle skeleton is_a: UBERON:0010719 ! girdle skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region intersection_of: RO:0002576 UBERON:0001421 ! skeleton of pectoral girdle region relationship: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region relationship: BFO:0000050 UBERON:0012475 ! part of skeleton of pectoral complex relationship: RO:0002576 UBERON:0001421 ! skeleton of pectoral girdle region property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/22/Pectoral_girdle_front_diagram.svg" xsd:anyURI [Term] id: UBERON:0007832 name: pelvic girdle skeleton is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010719 ! girdle skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region intersection_of: RO:0002576 UBERON:0001271 ! skeleton of pelvic girdle region relationship: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region relationship: BFO:0000050 UBERON:0012476 ! part of skeleton of pelvic complex relationship: RO:0002202 UBERON:0010377 ! develops from mesenchyme from somatopleure relationship: RO:0002576 UBERON:0001271 ! skeleton of pelvic girdle region property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray242.png" xsd:anyURI property_value: IAO:0000116 "need to resolve whether this is a paired structure or a single belt (Paired in FMA - implicitly paired in VSAO)" xsd:string [Term] id: UBERON:0007842 name: membrane bone is_a: UBERON:0001474 ! bone element relationship: RO:0002353 GO:0001957 ! output of intramembranous ossification [Term] id: UBERON:0007844 name: cartilage element is_a: UBERON:0004765 ! skeletal element intersection_of: UBERON:0004765 ! skeletal element intersection_of: RO:0002473 UBERON:0002418 ! composed primarily of cartilage tissue relationship: BFO:0000051 UBERON:0002418 ! has part cartilage tissue relationship: RO:0002202 UBERON:0005863 ! develops from cartilaginous condensation relationship: RO:0002473 UBERON:0002418 ! composed primarily of cartilage tissue [Term] id: UBERON:0007845 name: regular connective tissue is_a: UBERON:0002384 ! connective tissue disjoint_from: UBERON:0011821 ! irregular connective tissue relationship: BFO:0000051 GO:0071953 ! has part elastic fiber relationship: BFO:0000051 UBERON:0011860 ! has part collection of collagen fibrils property_value: IAO:0000116 "the connective tissue hierarchy largely follows FMA with definitions from VSAO. Note that in FMA, loose-CT is irregular-CT. This means regular-CT is necessarily equivalent to dense-regular-CT (assuming a JEPD classification)." xsd:string [Term] id: UBERON:0007846 name: dense regular connective tissue is_a: UBERON:0007845 ! regular connective tissue is_a: UBERON:0011823 ! dense connective tissue intersection_of: UBERON:0007845 ! regular connective tissue intersection_of: BFO:0000051 GO:0071953 ! has part elastic fiber intersection_of: RO:0002473 UBERON:0011860 ! composed primarily of collection of collagen fibrils [Term] id: UBERON:0007914 name: bone of craniocervical region is_a: UBERON:0001474 ! bone element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0008001 name: irregular bone is_a: UBERON:0001474 ! bone element [Term] id: UBERON:0008114 name: joint of girdle is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: BFO:0000050 UBERON:0007823 ! part of appendage girdle region relationship: BFO:0000050 UBERON:0007823 ! part of appendage girdle region relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002176 UBERON:0007828 ! connects girdle bone/zone [Term] id: UBERON:0008115 name: surface of cartilage is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: RO:0002007 UBERON:0007844 ! bounding layer of cartilage element relationship: BFO:0000050 UBERON:0007844 ! part of cartilage element relationship: RO:0002007 UBERON:0007844 ! bounding layer of cartilage element [Term] id: UBERON:0008193 name: pneumatized bone is_a: UBERON:0001474 ! bone element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000051 UBERON:0010528 ! has part pneumatic cavity of bone relationship: BFO:0000051 UBERON:0010528 ! has part pneumatic cavity of bone property_value: IAO:0000116 "subclasses of this should be checked for taxonomic consistency" xsd:string property_value: UBPROP:0000008 "Skeletal pneumaticity is the presence of air spaces within bones. Skeletal pneumaticity exists only in synapsids and archosaurs. It is generally produced during development by excavation of bone by pneumatic diverticula (air sacs) from an air-filled space such as the lungs or nasal cavity. Pneumatization is highly variable between individuals, and bones not normally pneumatized can become pneumatized in pathological development. Pneumatization occurs in the skulls of mammals, crocodilians and birds among extant groups, as well as extinct archosaurs including the dinosaurs and pterosaurs. Pneumatic spaces include the paranasal sinuses and some of the mastoid cells[WP]. [Wikipedia:Skeletal_pneumaticity]" xsd:string [Term] id: UBERON:0008196 name: muscle of pectoral girdle is_a: UBERON:0010891 ! pectoral complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region relationship: BFO:0000050 UBERON:0004471 ! part of musculature of pectoral girdle [Term] id: UBERON:0008203 name: pelvic cavity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: BFO:0000050 UBERON:0002323 ! part of coelemic cavity lumen intersection_of: RO:0002572 UBERON:0002355 ! luminal space of pelvic region of trunk relationship: BFO:0000050 UBERON:0002355 ! part of pelvic region of trunk relationship: BFO:0000050 UBERON:0035819 ! part of abdominopelvic cavity relationship: RO:0002572 UBERON:0002355 ! luminal space of pelvic region of trunk property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg" xsd:anyURI [Term] id: UBERON:0008229 name: craniocervical region musculature is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0008307 name: heart endothelium is_a: UBERON:0004852 ! cardiovascular system endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0000948 ! part of heart property_value: IAO:0000232 "this class includes any endothelia that are part of the heart. This might include the endocardial epithelia, as well as endothelia of vessels that are considered strictly part of the heart (e.g. outflow tract). As a grouping class, this may lack utility, and pending review this class may be obsoleted. For annotation consider a more specific class." xsd:string [Term] id: UBERON:0008339 name: microvascular endothelium is_a: UBERON:0004638 ! blood vessel endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:8410081 ! part of blood microvessel relationship: BFO:0000050 UBERON:8410081 ! part of blood microvessel property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2186" xsd:string [Term] id: UBERON:0008342 name: intestinal villus of duodenum is_a: UBERON:0001213 ! intestinal villus intersection_of: UBERON:0001213 ! intestinal villus intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0000320 ! part of duodenal mucosa [Term] id: UBERON:0008346 name: duodenal epithelium is_a: UBERON:0013636 ! epithelium of intestinal villus intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0008342 ! part of intestinal villus of duodenum property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0008397 name: tracheobronchial epithelium is_a: UBERON:0004815 ! lower respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0007196 ! part of tracheobronchial tree relationship: BFO:0000050 UBERON:0007196 ! part of tracheobronchial tree [Term] id: UBERON:0008780 name: inner cell mass derived epiblast comment: The epiblast cells (appearing on day 8 of human embryonic development) make up a columnar epithelium with dense microvilli on the apical surface. During gastrulation, the epiblast cells undergo epithelial-to-mesenchymal transition and delaminate to become the loose mesenchyme of the primitive streak. The epiblast is present in postimplantation mouse embryos between E5.5-E7.5. is_a: UBERON:0002532 ! epiblast (generic) intersection_of: UBERON:0002532 ! epiblast (generic) intersection_of: RO:0002202 UBERON:0000087 ! develops from inner cell mass relationship: BFO:0000050 UBERON:0000091 ! part of bilaminar disc relationship: RO:0002202 UBERON:0000087 ! develops from inner cell mass [Term] id: UBERON:0008814 name: pharyngeal arch system is_a: UBERON:0034921 ! multi organ part structure relationship: BFO:0000050 UBERON:0000922 ! part of embryo relationship: BFO:0000050 UBERON:0009145 ! part of pharyngeal region of foregut relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata property_value: IAO:0000116 "Currently defined in a vertebrate specific manner. The arch system has origins in basal deuterostomes, consider generalizing" xsd:string [Term] id: UBERON:0008816 name: embryonic head is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo relationship: BFO:0000050 UBERON:0000922 ! part of embryo [Term] id: UBERON:0008823 name: neural tube derived brain is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0000955 ! brain intersection_of: UBERON:0000955 ! brain intersection_of: RO:0002202 UBERON:0001049 ! develops from neural tube relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: RO:0002202 UBERON:0001049 ! develops from neural tube property_value: IAO:0000116 "a reasoner should automatically classify all the vertebrate ontology brain classes here" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/338" xsd:anyURI [Term] id: UBERON:0008835 name: hepatic diverticulum is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum relationship: BFO:0000050 UBERON:0004161 ! part of septum transversum relationship: RO:0002202 UBERON:0003894 ! develops from liver primordium property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png" xsd:anyURI property_value: UBPROP:0000008 "in mice, the hepatic diverticulum forms by E9 and expands into an obvious liver bud by E10" xsd:string property_value: UBPROP:0000011 "The caudal part of the septum transversum is invaded by the hepatic diverticulum which divides within it to form the liver and thus gives rise to the ventral mesentery of the foregut." xsd:string [Term] id: UBERON:0008836 name: liver bud is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum relationship: RO:0002202 UBERON:0008835 ! develops from hepatic diverticulum [Term] id: UBERON:0008856 name: stomach muscularis externa is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018261 ! muscular coat of digestive tract is_a: UBERON:0034933 ! layer of smooth muscle tissue intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0001167 ! part of wall of stomach relationship: BFO:0000050 UBERON:0004222 ! part of stomach smooth muscle relationship: RO:0002433 UBERON:0001135 ! contributes to morphology of smooth muscle tissue relationship: RO:0002433 UBERON:0001167 ! contributes to morphology of wall of stomach [Term] id: UBERON:0008858 name: pyloric canal is_a: UBERON:0009870 ! zone of stomach relationship: BFO:0000050 UBERON:0001166 ! part of pylorus relationship: RO:0002150 UBERON:0001165 ! continuous with pyloric antrum relationship: RO:0002150 UBERON:0001202 ! continuous with pyloric sphincter relationship: RO:0002433 UBERON:0001166 ! contributes to morphology of pylorus property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg" xsd:anyURI [Term] id: UBERON:0008861 name: pyloric gastric gland is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 ! mucous gland intersection_of: UBERON:0000325 ! gastric gland intersection_of: BFO:0000050 UBERON:0001166 ! part of pylorus relationship: BFO:0000050 UBERON:0004998 ! part of mucosa of pylorus relationship: RO:0000086 PATO:0002299 ! has quality tubular relationship: RO:0002433 UBERON:0001166 ! contributes to morphology of pylorus property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png" xsd:anyURI property_value: IAO:0000116 "check relationship to pylorus vs antrum" xsd:string [Term] id: UBERON:0008876 name: hypodermis skeletal muscle layer is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004253 ! skin muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis relationship: BFO:0000050 UBERON:0002072 ! part of hypodermis relationship: RO:0001025 UBERON:0002190 ! located in subcutaneous adipose tissue relationship: RO:0002373 UBERON:0002097 ! has muscle insertion skin of body relationship: RO:0002433 UBERON:0001015 ! contributes to morphology of musculature relationship: RO:0002433 UBERON:0002072 ! contributes to morphology of hypodermis property_value: IAO:0000116 "We follow MP and treat this as part of the hypodermis, although some sources may consider the hypodermis to be superficial to this" xsd:string [Term] id: UBERON:0008886 name: pulmonary vascular system is_a: UBERON:0007798 ! vascular system relationship: BFO:0000051 UBERON:0002012 ! has part pulmonary artery relationship: BFO:0000051 UBERON:0002016 ! has part pulmonary vein property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0008895 name: splanchnocranium is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system disjoint_from: UBERON:0011156 ! facial skeleton relationship: RO:0002131 UBERON:0011156 {gci_filler="NCBITaxon:89593", gci_relation="BFO:0000050"} ! overlaps facial skeleton relationship: RO:0002202 UBERON:0002539 ! develops from pharyngeal arch relationship: RO:0002254 UBERON:0003099 ! has developmental contribution from cranial neural crest property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg" xsd:anyURI property_value: UBPROP:0000012 "many sources define this as the part of the endoskeletal that is from pharyngeal arches - this would make it part-disjoint from dermatocranium. However, there are many bones in AOs that have part-paths to both" xsd:string [Term] id: UBERON:0008896 name: post-hyoid pharyngeal arch is_a: UBERON:0002539 ! pharyngeal arch intersection_of: UBERON:0002539 ! pharyngeal arch intersection_of: BSPO:0000099 UBERON:0003066 ! pharyngeal arch 2 relationship: BSPO:0000099 UBERON:0003066 ! pharyngeal arch 2 [Term] id: UBERON:0008907 name: dermal bone is_a: UBERON:0004756 ! dermal skeletal element is_a: UBERON:0007842 ! membrane bone intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0010364 ! part of dermal skeleton relationship: BFO:0000050 UBERON:0010364 ! part of dermal skeleton property_value: UBPROP:0000012 "other AOs are not yet in sync with this classification" xsd:string [Term] id: UBERON:0008909 name: perichordal bone is_a: UBERON:0012075 ! replacement bone intersection_of: UBERON:0001474 ! bone element intersection_of: RO:0002220 UBERON:0002328 ! adjacent to notochord relationship: RO:0002220 UBERON:0002328 ! adjacent to notochord property_value: IAO:0000116 "We go with the latest VSAO in making this a subtype of bone, and add a logical definition based on the textual definition in VSAO. We also include the subtyping under 'replacement bone', for consistency with ZFA" xsd:string [Term] id: UBERON:0008946 name: lung parenchyma is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0008947 name: respiratory primordium is_a: UBERON:0001048 ! primordium relationship: BFO:0000050 UBERON:0003258 ! part of endoderm of foregut relationship: RO:0002387 UBERON:0001004 ! has potential to develop into respiratory system [Term] id: UBERON:0008962 name: forelimb bone is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010741 ! bone of pectoral complex is_a: UBERON:0015021 ! forelimb endochondral element intersection_of: UBERON:0015021 ! forelimb endochondral element intersection_of: RO:0002473 UBERON:0002481 ! composed primarily of bone tissue relationship: RO:0002202 UBERON:0010883 ! develops from forelimb cartilage element [Term] id: UBERON:0008987 name: renal parenchyma is_a: UBERON:0000353 ! parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0008989 name: submucosal esophageal gland is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0011148 ! submucosal gland intersection_of: UBERON:0011148 ! submucosal gland intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: RO:0001025 UBERON:0001972 ! located in submucosa of esophagus property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg" xsd:anyURI [Term] id: UBERON:0008998 name: vasculature of brain is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0009010 name: periurethral tissue is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue intersection_of: RO:0002221 UBERON:0000057 ! surrounds urethra relationship: BFO:0000050 UBERON:0001556 ! part of lower urinary tract relationship: RO:0002221 UBERON:0000057 ! surrounds urethra [Term] id: UBERON:0009027 name: vesical artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001255 ! supplies urinary bladder relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0001255 ! supplies urinary bladder [Term] id: UBERON:0009029 name: pudendal vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! pelvis blood vessel [Term] id: UBERON:0009030 name: left pulmonary vein is_a: UBERON:0002016 ! pulmonary vein intersection_of: UBERON:0002016 ! pulmonary vein intersection_of: RO:0002179 UBERON:0002168 ! drains left lung relationship: RO:0002179 UBERON:0002168 ! drains left lung [Term] id: UBERON:0009032 name: right pulmonary vein is_a: UBERON:0002016 ! pulmonary vein intersection_of: UBERON:0002016 ! pulmonary vein intersection_of: RO:0002179 UBERON:0002167 ! drains right lung relationship: RO:0002179 UBERON:0002167 ! drains right lung [Term] id: UBERON:0009117 name: indifferent gonad comment: typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321] is_a: UBERON:0000991 ! gonad relationship: BFO:0000050 UBERON:0009196 ! part of indifferent external genitalia [Term] id: UBERON:0009125 name: petrosal placode comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to glossopharyngeal ganglion is_a: UBERON:0003078 ! epibranchial placode [Term] id: UBERON:0009127 name: epibranchial ganglion comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: RO:0002202 UBERON:0003078 ! develops from epibranchial placode relationship: RO:0002202 UBERON:0003078 ! develops from epibranchial placode [Term] id: UBERON:0009129 name: right atrium endocardium is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0002166 ! endocardium of atrium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0002165 ! endocardium intersection_of: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium relationship: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium relationship: BFO:0000050 UBERON:0006218 ! part of common atrial chamber relationship: RO:0002202 UBERON:0005092 ! develops from right horn of sinus venosus [Term] id: UBERON:0009141 name: craniocervical region vein is_a: UBERON:0013140 ! systemic vein intersection_of: UBERON:0001638 ! vein intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0009142 name: entire embryonic mesenchyme is_a: UBERON:0000477 ! anatomical cluster relationship: BFO:0000050 UBERON:0000922 ! part of embryo relationship: RO:0002254 UBERON:0000926 ! has developmental contribution from mesoderm relationship: RO:0002473 UBERON:0003104 ! composed primarily of mesenchyme property_value: IAO:0000116 "consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm)" xsd:string [Term] id: UBERON:0009145 name: pharyngeal region of foregut is_a: UBERON:0005423 ! developing anatomical structure relationship: BFO:0000050 UBERON:0001041 ! part of foregut [Term] id: UBERON:0009196 name: indifferent external genitalia is_a: UBERON:0004176 ! external genitalia relationship: BFO:0000050 UBERON:0000922 ! part of embryo [Term] id: UBERON:0009198 name: craniofacial suture is_a: UBERON:0002209 ! fibrous joint intersection_of: UBERON:0002209 ! fibrous joint intersection_of: RO:0002176 UBERON:0003457 {minCardinality="2"} ! connects head bone relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system relationship: RO:0002176 UBERON:0003457 ! connects head bone property_value: IAO:0000116 "we follow GO in dividing sutures into cranial and facial and making a grouping class, but this is not consistent with FMA" xsd:string [Term] id: UBERON:0009199 name: facial suture is_a: UBERON:0009198 ! craniofacial suture is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0009198 ! craniofacial suture intersection_of: RO:0002176 UBERON:0003462 {minCardinality="2"} ! connects facial bone relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton relationship: RO:0002176 UBERON:0003462 ! connects facial bone [Term] id: UBERON:0009200 name: limb epidermis is_a: UBERON:0001003 ! skin epidermis is_a: UBERON:3000981 ! limb external integument structure intersection_of: UBERON:0001003 ! skin epidermis intersection_of: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0009201 name: nephric duct comment: pronephric duct or mesonephric duct is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006553 ! renal duct is_a: UBERON:0006555 ! excretory tube union_of: UBERON:0003060 ! pronephric duct union_of: UBERON:0003074 ! mesonephric duct [Term] id: UBERON:0009471 name: dorsum of tongue is_a: UBERON:0000064 ! organ part relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0009479 name: ectoderm of buccopharyngeal membrane is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm intersection_of: BFO:0000050 UBERON:0006211 ! part of buccopharyngeal membrane relationship: BFO:0000050 UBERON:0006211 ! part of buccopharyngeal membrane [Term] id: UBERON:0009480 name: endoderm of buccopharyngeal membrane is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm intersection_of: BFO:0000050 UBERON:0006211 ! part of buccopharyngeal membrane relationship: BFO:0000050 UBERON:0006211 ! part of buccopharyngeal membrane [Term] id: UBERON:0009482 name: associated mesenchyme of foregut-midgut junction is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction [Term] id: UBERON:0009483 name: mesentery of foregut-midgut junction is_a: UBERON:0002095 ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction [Term] id: UBERON:0009494 name: pharyngeal arch mesenchymal region is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0007524 ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0002539 ! part of pharyngeal arch relationship: BFO:0000050 UBERON:0002539 ! part of pharyngeal arch relationship: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme relationship: RO:0002254 UBERON:0003099 ! has developmental contribution from cranial neural crest [Term] id: UBERON:0009497 name: epithelium of foregut-midgut junction is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction relationship: BFO:0000050 UBERON:0003929 ! part of digestive tract epithelium relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction relationship: RO:0002202 UBERON:0009550 ! develops from endoderm of foregut-midgut junction [Term] id: UBERON:0009503 name: mesenchyme of hindgut is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0001046 ! part of hindgut relationship: BFO:0000050 UBERON:0001046 ! part of hindgut [Term] id: UBERON:0009505 name: mesenchyme of trachea is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007524 ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0003126 ! part of trachea relationship: RO:0002202 UBERON:0002539 ! develops from pharyngeal arch [Term] id: UBERON:0009521 name: anal membrane endodermal component is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region intersection_of: RO:0002202 UBERON:0000925 ! develops from endoderm relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0009522 name: lateral lingual swelling epithelium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0006757 ! part of lateral lingual swelling relationship: BFO:0000050 UBERON:0006757 ! part of lateral lingual swelling [Term] id: UBERON:0009550 name: endoderm of foregut-midgut junction is_a: UBERON:0000925 ! endoderm intersection_of: UBERON:0000925 ! endoderm intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction [Term] id: UBERON:0009566 name: intestinal submucosa is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine [Term] id: UBERON:0009569 name: subdivision of trunk is_a: UBERON:0000475 ! organism subdivision relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:0009570 name: spinal cord sulcus limitans is_a: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: BFO:0000050 UBERON:0006241 ! part of future spinal cord relationship: BFO:0000050 UBERON:0006241 ! part of future spinal cord [Term] id: UBERON:0009576 name: medulla oblongata sulcus limitans is_a: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: BFO:0000050 UBERON:0001896 ! part of medulla oblongata relationship: BFO:0000050 UBERON:0001896 ! part of medulla oblongata relationship: RO:0002202 UBERON:0009578 ! develops from myelencephalon sulcus limitans [Term] id: UBERON:0009577 name: metencephalon sulcus limitans is_a: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: BFO:0000050 UBERON:0010092 ! part of future metencephalon relationship: BFO:0000050 UBERON:0010092 ! part of future metencephalon [Term] id: UBERON:0009578 name: myelencephalon sulcus limitans is_a: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: BFO:0000050 UBERON:0010096 ! part of future myelencephalon relationship: BFO:0000050 UBERON:0010096 ! part of future myelencephalon [Term] id: UBERON:0009581 name: midbrain mantle layer is_a: UBERON:0004061 ! neural tube mantle layer intersection_of: UBERON:0004061 ! neural tube mantle layer intersection_of: BFO:0000050 UBERON:0009616 ! part of presumptive midbrain relationship: BFO:0000050 UBERON:0009616 ! part of presumptive midbrain [Term] id: UBERON:0009583 name: spinal cord mantle layer is_a: UBERON:0004061 ! neural tube mantle layer intersection_of: UBERON:0004061 ! neural tube mantle layer intersection_of: BFO:0000050 UBERON:0006241 ! part of future spinal cord relationship: BFO:0000050 UBERON:0006241 ! part of future spinal cord [Term] id: UBERON:0009584 name: 1st arch mandibular mesenchyme is_a: UBERON:0010042 ! 1st arch mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0007237 ! part of 1st arch mandibular component relationship: BFO:0000050 UBERON:0007237 ! part of 1st arch mandibular component [Term] id: UBERON:0009602 name: left lung associated mesenchyme is_a: UBERON:0004883 ! lung mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0002168 ! part of left lung relationship: BFO:0000050 UBERON:0002168 ! part of left lung [Term] id: UBERON:0009603 name: right lung associated mesenchyme is_a: UBERON:0004883 ! lung mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0002167 ! part of right lung relationship: BFO:0000050 UBERON:0002167 ! part of right lung [Term] id: UBERON:0009615 name: midbrain hindbrain boundary neural plate is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000050 UBERON:0003075 ! part of neural plate relationship: RO:0002202 UBERON:0007281 ! develops from presumptive midbrain hindbrain boundary relationship: RO:0002495 UBERON:0007281 ! immediate transformation of presumptive midbrain hindbrain boundary property_value: IAO:0000116 "TODO - developmental relationships for lines" xsd:string [Term] id: UBERON:0009616 name: presumptive midbrain is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0001891 ! has potential to develop into midbrain relationship: BFO:0000050 UBERON:0006238 ! part of future brain relationship: RO:0002202 UBERON:0003080 ! develops from anterior neural tube relationship: RO:0002202 UBERON:0010286 ! develops from midbrain neural tube relationship: RO:0002387 UBERON:0001891 ! has potential to develop into midbrain property_value: IAO:0000116 "TODO - unify naming conventions" xsd:string [Term] id: UBERON:0009617 name: head paraxial mesoderm is_a: UBERON:0005253 ! head mesenchyme relationship: BFO:0000050 UBERON:0003077 ! part of paraxial mesoderm relationship: BFO:0000050 UBERON:0005253 ! part of head mesenchyme property_value: UBPROP:0000011 "A major contributor to neurocranium [PMID:16313393]" xsd:string [Term] id: UBERON:0009618 name: trunk paraxial mesoderm is_a: UBERON:0005256 ! trunk mesenchyme relationship: BFO:0000050 UBERON:0003077 ! part of paraxial mesoderm relationship: BFO:0000050 UBERON:0005256 ! part of trunk mesenchyme [Term] id: UBERON:0009644 name: trachea non-cartilage connective tissue is_a: UBERON:0003571 ! trachea connective tissue [Term] id: UBERON:0009651 name: nephron tubule basement membrane is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: BFO:0000050 UBERON:0001231 ! part of nephron tubule relationship: BFO:0000050 UBERON:0004810 ! part of nephron tubule epithelium [Term] id: UBERON:0009652 name: bronchus basement membrane is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015329 ! respiratory system basement membrane intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0002031 ! part of epithelium of bronchus [Term] id: UBERON:0009653 name: trachea basement membrane is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015329 ! respiratory system basement membrane intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: BFO:0000050 UBERON:0003126 ! part of trachea relationship: BFO:0000050 UBERON:0001901 ! part of epithelium of trachea relationship: BFO:0000050 UBERON:0009644 ! part of trachea non-cartilage connective tissue [Term] id: UBERON:0009657 name: artery of lip is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001833 ! supplies lip relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0001833 ! supplies lip [Term] id: UBERON:0009661 name: midbrain nucleus is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain relationship: BFO:0000050 UBERON:0001891 ! part of midbrain [Term] id: UBERON:0009662 name: hindbrain nucleus is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0009664 name: gut mesentery is_a: UBERON:0002095 ! mesentery relationship: RO:0001025 UBERON:0001179 ! located in peritoneal cavity property_value: seeAlso "https://github.com/obophenotype/uberon/issues/509" xsd:anyURI [Term] id: UBERON:0009669 name: embryonic cloacal lumen is_a: UBERON:0012463 ! cloacal lumen intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000163 ! luminal space of embryonic cloaca relationship: BFO:0000050 UBERON:0000163 ! part of embryonic cloaca relationship: RO:0002219 UBERON:0009846 ! surrounded by embryonic cloacal epithelium relationship: RO:0002572 UBERON:0000163 ! luminal space of embryonic cloaca [Term] id: UBERON:0009670 name: rectal lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0001052 ! luminal space of rectum relationship: BFO:0000050 UBERON:0001052 ! part of rectum relationship: BFO:0000050 UBERON:0012465 ! part of lumen of terminal part of digestive tract relationship: RO:0002202 UBERON:0009669 ! develops from embryonic cloacal lumen relationship: RO:0002572 UBERON:0001052 ! luminal space of rectum [Term] id: UBERON:0009708 name: dorsal pancreas is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element relationship: BFO:0000050 UBERON:0001264 ! part of pancreas relationship: RO:0002202 UBERON:0010375 ! develops from pancreas dorsal primordium relationship: RO:0002254 UBERON:0003923 ! has developmental contribution from dorsal pancreatic bud property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009709 name: ventral pancreas is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element relationship: BFO:0000050 UBERON:0001264 ! part of pancreas relationship: RO:0002202 UBERON:0010376 ! develops from pancreas ventral primordium relationship: RO:0002254 UBERON:0003924 ! has developmental contribution from ventral pancreatic bud property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009712 name: endocardium of right ventricle is_a: UBERON:0001081 ! endocardium of ventricle intersection_of: UBERON:0001081 ! endocardium of ventricle intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: RO:0002202 UBERON:0004706 ! develops from bulbus cordis relationship: RO:0002371 UBERON:0006567 ! attached to right ventricle myocardium [Term] id: UBERON:0009713 name: endocardium of left ventricle is_a: UBERON:0001081 ! endocardium of ventricle intersection_of: UBERON:0001081 ! endocardium of ventricle intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle relationship: RO:0002371 UBERON:0006566 ! attached to left ventricle myocardium [Term] id: UBERON:0009715 name: stomodeal lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000930 ! luminal space of stomodeum relationship: BFO:0000050 UBERON:0000930 ! part of stomodeum relationship: RO:0002572 UBERON:0000930 ! luminal space of stomodeum [Term] id: UBERON:0009722 name: entire pharyngeal arch endoderm is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015833 ! foregut epithelium relationship: BFO:0000050 UBERON:0003929 ! part of digestive tract epithelium relationship: BFO:0000050 UBERON:0008814 ! part of pharyngeal arch system [Term] id: UBERON:0009749 name: limb mesenchyme is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0009751 name: cardiac mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0000948 ! part of heart property_value: IAO:0000116 "decide whether to merge with cardiac mesoderm. In EHDAA2 this lasts CS12->unbounded, includes mesenchyme of individual components as parts" xsd:string [Term] id: UBERON:0009752 name: pancreas mesenchyme is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas relationship: BFO:0000050 UBERON:0001264 ! part of pancreas property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009758 name: abdominal ganglion is_a: UBERON:0007134 ! trunk ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk [Term] id: UBERON:0009773 name: renal tubule is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0006555 ! excretory tube relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria property_value: IAO:0000232 "this class groups vertebrate nephron tubules with analagous structures such as insect Malpighian tubules" xsd:string [Term] id: UBERON:0009842 name: glandular acinus is_a: UBERON:0034922 ! cell cluster relationship: BFO:0000050 UBERON:0002530 ! part of gland relationship: RO:0000086 PATO:0002422 ! has quality acinar property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png" xsd:anyURI property_value: UBPROP:0000007 "acinar" xsd:string [Term] id: UBERON:0009844 name: urogenital sinus lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000164 ! luminal space of primitive urogenital sinus relationship: BFO:0000050 UBERON:0000164 ! part of primitive urogenital sinus relationship: RO:0002202 UBERON:0009669 ! develops from embryonic cloacal lumen relationship: RO:0002219 UBERON:0004902 ! surrounded by urogenital sinus epithelium relationship: RO:0002572 UBERON:0000164 ! luminal space of primitive urogenital sinus [Term] id: UBERON:0009846 name: embryonic cloacal epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0009521 ! anal membrane endodermal component is_a: UBERON:0012481 ! cloacal epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000163 ! part of embryonic cloaca relationship: BFO:0000050 UBERON:0000163 ! part of embryonic cloaca relationship: BFO:0000050 UBERON:0003929 ! part of digestive tract epithelium relationship: RO:0002202 UBERON:0003353 ! develops from epithelium of hindgut [Term] id: UBERON:0009850 name: nematode larva is_a: UBERON:0002548 ! larva intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002491 UBERON:0004729 ! existence starts and ends during nematode larval stage relationship: RO:0002491 UBERON:0004729 ! existence starts and ends during nematode larval stage property_value: RO:0002175 NCBITaxon:6239 [Term] id: UBERON:0009854 name: digestive tract diverticulum is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0009856 ! sac intersection_of: UBERON:0009856 ! sac intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0009856 name: sac is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0000086 PATO:0001987 ! has quality saccular relationship: RO:0000086 PATO:0001987 ! has quality saccular [Term] id: UBERON:0009870 name: zone of stomach is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0000945 ! part of stomach property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/2/29/Regions_of_stomach.svg" xsd:anyURI property_value: IAO:0000116 "We follow Kardong in defining stomach regions by gland, but we also include 'body of stomach'. In future we may want to have different partitions of the stomach" xsd:string [Term] id: UBERON:0009871 name: nephrogenic zone is_a: UBERON:0005423 ! developing anatomical structure relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney property_value: UBPROP:0000008 "see http://www.ncbi.nlm.nih.gov/pubmed/12761251 for description of nephrogenic zone in dogfish." xsd:string [Term] id: UBERON:0009881 name: anterior lateral plate mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm [Term] id: UBERON:0009883 name: medullary ray is_a: UBERON:0000064 ! organ part relationship: BFO:0000050 UBERON:0001225 ! part of cortex of kidney relationship: RO:0002131 UBERON:0001231 ! overlaps nephron tubule relationship: RO:0002433 UBERON:0001225 ! contributes to morphology of cortex of kidney property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000013 "Their name is potentially misleading -- the 'medullary' refers to their destination, not their location. They are located only in the renal cortex, and not in the renal medulla" xsd:string [Term] id: UBERON:0009885 name: interlobar artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0009913 ! supplies renal lobe relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0009913 ! supplies renal lobe property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009887 name: interlobar vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0009913 ! drains renal lobe relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0001140 ! connected to renal vein relationship: RO:0002179 UBERON:0009913 ! drains renal lobe property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009889 name: secondary heart field is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage relationship: BFO:0000050 UBERON:0003081 ! part of lateral plate mesoderm relationship: BSPO:0000096 UBERON:0004140 ! primary heart field relationship: BSPO:0000098 UBERON:0004140 ! primary heart field relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata property_value: UBPROP:0000011 "in mouse has left ventricular identity[PMID:22855565]" xsd:string [Term] id: UBERON:0009891 name: facial mesenchyme is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0001456 ! part of face relationship: BFO:0000050 UBERON:0001456 ! part of face [Term] id: UBERON:0009911 name: lobule is_a: UBERON:0000063 ! organ subunit property_value: IAO:0000116 "todo - provide definition. Clearly distinguish between lobules, lobes and acinar parts of glands (see for example lobule of mammary gland)" xsd:string [Term] id: UBERON:0009912 name: anatomical lobe is_a: UBERON:0000063 ! organ subunit [Term] id: UBERON:0009913 name: renal lobe is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0002113 ! part of kidney relationship: RO:0002433 UBERON:0002113 ! contributes to morphology of kidney property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI property_value: IAO:0000116 "todo - add has_part relationships." xsd:string [Term] id: UBERON:0009914 name: renal lobule comment: Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BFO:0000050 UBERON:0009913 ! part of renal lobe relationship: BFO:0000051 UBERON:0001285 ! has part nephron relationship: BFO:0000051 UBERON:0009883 ! has part medullary ray relationship: RO:0002433 UBERON:0002113 ! contributes to morphology of kidney [Term] id: UBERON:0009916 name: wall of ureter is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000051 UBERON:0005742 ! has part adventitia relationship: BFO:0000051 UBERON:0006660 ! has part muscular coat [Term] id: UBERON:0009919 name: ureter smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000050 UBERON:0006855 ! part of muscular coat of ureter relationship: RO:0002433 UBERON:0000056 ! contributes to morphology of ureter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0009920 name: optic neural crest is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007530 ! migrating mesenchyme population relationship: BFO:0000050 UBERON:0007213 ! part of mesenchyme derived from head neural crest [Term] id: UBERON:0009953 name: post-embryonic organism is_a: UBERON:0000468 ! multicellular organism intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002489 UBERON:0000092 ! existence starts with post-embryonic stage relationship: RO:0002489 UBERON:0000092 ! existence starts with post-embryonic stage property_value: seeAlso "https://github.com/obophenotype/uberon/issues/667" xsd:anyURI [Term] id: UBERON:0009955 name: neurogenic placode is_a: UBERON:0002546 ! cranial placode disjoint_from: UBERON:0011814 ! non-neurogenic ectodermal placode relationship: RO:0002202 UBERON:2007013 ! develops from preplacodal ectoderm relationship: RO:0002385 UBERON:0001714 ! has potential to developmentally contribute to cranial ganglion relationship: RO:0002385 UBERON:0001785 ! has potential to developmentally contribute to cranial nerve property_value: IAO:0000232 "Includes: trigeminal, otic, lateral line and epibranchial placodes." xsd:string [Term] id: UBERON:0009970 name: epithelium of pancreatic duct is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0013697 ! exocrine pancreas epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0007329 ! part of pancreatic duct relationship: BFO:0000050 UBERON:0007329 ! part of pancreatic duct property_value: IAO:0000116 "in EHDAA2, the embryonic pancreatic ducts (dorsal, ventral) are classified as eithelial sacs, which would render them subclasses of this" xsd:string [Term] id: UBERON:0009972 name: ureteropelvic junction is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0000056 ! connects ureter intersection_of: RO:0002176 UBERON:0001224 ! connects renal pelvis relationship: BFO:0000050 UBERON:0001008 ! part of renal system relationship: RO:0002176 UBERON:0000056 ! connects ureter relationship: RO:0002176 UBERON:0001224 ! connects renal pelvis relationship: RO:0002433 UBERON:0001008 ! contributes to morphology of renal system [Term] id: UBERON:0009973 name: ureterovesical junction is_a: UBERON:0003978 ! valve is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0000056 ! connects ureter intersection_of: RO:0002176 UBERON:0001255 ! connects urinary bladder relationship: BFO:0000050 UBERON:0001008 ! part of renal system relationship: RO:0002176 UBERON:0000056 ! connects ureter relationship: RO:0002176 UBERON:0001255 ! connects urinary bladder relationship: RO:0002433 UBERON:0001008 ! contributes to morphology of renal system [Term] id: UBERON:0010000 name: multicellular anatomical structure is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0000086 PATO:0001993 ! has quality multicellular relationship: RO:0000086 PATO:0001993 ! has quality multicellular property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0010009 name: aggregate regional part of brain is_a: UBERON:0034923 ! disconnected anatomical group intersection_of: UBERON:0034923 ! disconnected anatomical group intersection_of: BFO:0000050 UBERON:0000955 ! part of brain intersection_of: RO:0002351 UBERON:0002616 ! has member regional part of brain relationship: BFO:0000050 UBERON:0000955 ! part of brain relationship: RO:0002351 UBERON:0002616 ! has member regional part of brain property_value: IAO:0000116 "May be obsoleted." xsd:string [Term] id: UBERON:0010031 name: 6th arch mesenchyme is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0003117 ! part of pharyngeal arch 6 relationship: BFO:0000050 UBERON:0003117 ! part of pharyngeal arch 6 [Term] id: UBERON:0010039 name: food storage organ is_a: UBERON:0013765 ! digestive system element relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system property_value: IAO:0000232 "This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates" xsd:string [Term] id: UBERON:0010042 name: 1st arch mesenchyme is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 relationship: BFO:0000050 UBERON:0004362 ! part of pharyngeal arch 1 [Term] id: UBERON:0010046 name: entire pharyngeal arch associated mesenchyme is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: BFO:0000050 UBERON:0008814 ! part of pharyngeal arch system relationship: RO:0002254 UBERON:0003099 ! has developmental contribution from cranial neural crest [Term] id: UBERON:0010047 name: oral gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0000165 ! part of mouth relationship: BFO:0000050 UBERON:0000165 ! part of mouth [Term] id: UBERON:0010052 name: mucosa of dorsum of tongue is_a: UBERON:0005020 ! mucosa of tongue intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0009471 ! part of dorsum of tongue relationship: BFO:0000050 UBERON:0009471 ! part of dorsum of tongue property_value: IAO:0000116 "check surface terms" xsd:string property_value: UBPROP:0000011 "develops fungiform papillae by WNT induction at 11 weeks pc in human. Filiform papillae develop later. ISBN:1607950324" xsd:string [Term] id: UBERON:0010056 name: future tongue is_a: UBERON:0003103 ! compound organ is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0003103 ! compound organ intersection_of: RO:0002387 UBERON:0001723 ! has potential to develop into tongue relationship: BFO:0000050 UBERON:0000165 ! part of mouth relationship: RO:0002387 UBERON:0001723 ! has potential to develop into tongue [Term] id: UBERON:0010059 name: hypoglossal cord is_a: UBERON:0002036 ! striated muscle tissue relationship: BFO:0000050 UBERON:0010056 ! part of future tongue [Term] id: UBERON:0010077 name: cuboidal epithelium is_a: UBERON:0000483 ! epithelium property_value: IAO:0000116 "TODO - coordinate with CL, add cuboidal cell" xsd:string [Term] id: UBERON:0010081 name: future common hepatic duct is_a: UBERON:0003703 ! extrahepatic bile duct is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0034932 ! epithelium of biliary system intersection_of: UBERON:0003703 ! extrahepatic bile duct intersection_of: RO:0002387 UBERON:0001175 ! has potential to develop into common hepatic duct relationship: RO:0002202 UBERON:0005604 ! develops from extrahepatic part of hepatic duct relationship: RO:0002387 UBERON:0001175 ! has potential to develop into common hepatic duct [Term] id: UBERON:0010083 name: future dermis is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002387 UBERON:0002067 ! has potential to develop into dermis relationship: BFO:0000050 UBERON:0002199 ! part of integument relationship: RO:0002202 UBERON:0003089 ! develops from sclerotome relationship: RO:0002202 UBERON:0004016 ! develops from dermatome relationship: RO:0002387 UBERON:0002067 ! has potential to develop into dermis property_value: IAO:0000116 "check development" xsd:string [Term] id: UBERON:0010091 name: future hindbrain meninx is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0007645 ! future meninx intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0003291 ! has potential to develop into meninx of hindbrain relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: RO:0002387 UBERON:0003291 ! has potential to develop into meninx of hindbrain [Term] id: UBERON:0010092 name: future metencephalon is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0001895 ! has potential to develop into metencephalon relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: RO:0002387 UBERON:0001895 ! has potential to develop into metencephalon [Term] id: UBERON:0010096 name: future myelencephalon is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0005290 ! has potential to develop into myelencephalon relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: RO:0002387 UBERON:0005290 ! has potential to develop into myelencephalon [Term] id: UBERON:0010125 name: future superior salivatory nucleus is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: RO:0002387 UBERON:0002149 ! has potential to develop into superior salivatory nucleus relationship: RO:0002387 UBERON:0002149 ! has potential to develop into superior salivatory nucleus [Term] id: UBERON:0010131 name: conducting tissue of heart is_a: UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0010133 name: neuroendocrine gland is_a: UBERON:0002368 ! endocrine gland intersection_of: UBERON:0002368 ! endocrine gland intersection_of: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0010152 name: skin mucus is_a: UBERON:0000912 ! mucus intersection_of: UBERON:0000912 ! mucus intersection_of: RO:0003001 UBERON:0004790 ! produced by skin mucous gland relationship: RO:0003001 UBERON:0004790 ! produced by skin mucous gland [Term] id: UBERON:0010161 name: lumen of blood vessel is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0001981 ! luminal space of blood vessel relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel relationship: RO:0002572 UBERON:0001981 ! luminal space of blood vessel [Term] id: UBERON:0010187 name: female urethral gland is_a: UBERON:0001338 ! urethral gland intersection_of: UBERON:0001338 ! urethral gland intersection_of: BFO:0000050 UBERON:0001334 ! part of female urethra relationship: BFO:0000050 UBERON:0001334 ! part of female urethra [Term] id: UBERON:0010188 name: protuberance is_a: UBERON:0034944 ! zone of organ property_value: IAO:0000116 "requires review" xsd:string [Term] id: UBERON:0010189 name: right atrium venous valve is_a: UBERON:0005208 ! right atrium valve is_a: UBERON:0006675 ! venous valve intersection_of: UBERON:0006675 ! venous valve intersection_of: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium [Term] id: UBERON:0010191 name: aortic system is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0004571 ! part of systemic arterial system relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: UBERON:0010192 name: genital artery is_a: UBERON:0012254 ! abdominal aorta artery intersection_of: UBERON:0004573 ! systemic artery intersection_of: RO:0002178 UBERON:0000991 ! supplies gonad relationship: RO:0002178 UBERON:0000991 ! supplies gonad [Term] id: UBERON:0010194 name: hepatic portal system is_a: UBERON:0005806 ! portal system relationship: RO:0002176 UBERON:0001555 ! connects digestive tract relationship: RO:0002176 UBERON:0002107 ! connects liver [Term] id: UBERON:0010199 name: bona-fide anatomical boundary comment: One might argue that all boundaries are actually fiat in the sense that there must be some fiat element at a fine enough scale of granularity. This ontology choses to ignore this issue as below the level of granularity relevant to anatomy. (DOS121102) is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0010212 name: laryngeal apparatus is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0008895 ! part of splanchnocranium relationship: RO:0002473 UBERON:0001739 ! composed primarily of laryngeal cartilage property_value: IAO:0000116 "check this. See also https://github.com/obophenotype/uberon/wiki/The-axial-skeleton" xsd:string [Term] id: UBERON:0010213 name: laryngeal pre-cartilage condensation is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: BFO:0000050 UBERON:0010212 ! part of laryngeal apparatus relationship: RO:0002202 UBERON:0010221 ! develops from laryngeal associated mesenchyme [Term] id: UBERON:0010221 name: laryngeal associated mesenchyme comment: Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: BFO:0000050 UBERON:0001737 ! part of larynx relationship: BFO:0000050 UBERON:0008895 ! part of splanchnocranium relationship: RO:0002202 UBERON:0002539 ! develops from pharyngeal arch relationship: RO:0002254 UBERON:0003115 ! has developmental contribution from pharyngeal arch 4 relationship: RO:0002254 UBERON:0003117 ! has developmental contribution from pharyngeal arch 6 [Term] id: UBERON:0010227 name: future cardiac atrium is_a: UBERON:0006598 ! presumptive structure relationship: BFO:0000050 UBERON:0004141 ! part of heart tube relationship: RO:0002387 UBERON:0002081 ! has potential to develop into cardiac atrium [Term] id: UBERON:0010230 name: eyeball of camera-type eye is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: RO:0002433 UBERON:0000019 ! contributes to morphology of camera-type eye property_value: IAO:0000232 "See notes for camera-type eye" xsd:string property_value: UBPROP:0000202 FMA:264089 [Term] id: UBERON:0010252 name: 1st arch mandibular mesenchyme from neural crest is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme is_a: UBERON:0010259 ! 1st arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0009584 ! part of 1st arch mandibular mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: BFO:0000050 UBERON:0009584 ! part of 1st arch mandibular mesenchyme relationship: BFO:0000050 UBERON:0010258 ! part of mesenchyme from rhombencephalic neural crest relationship: RO:0002202 UBERON:0007098 ! develops from mandibular neural crest [Term] id: UBERON:0010254 name: 2nd arch mesenchyme from neural crest is_a: UBERON:0005689 ! 2nd arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005689 ! part of 2nd arch mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: BFO:0000050 UBERON:0005689 ! part of 2nd arch mesenchyme relationship: BFO:0000050 UBERON:0010258 ! part of mesenchyme from rhombencephalic neural crest relationship: RO:0002202 UBERON:0007099 ! develops from hyoid neural crest [Term] id: UBERON:0010255 name: 3rd arch mesenchyme from neural crest is_a: UBERON:0005690 ! 3rd arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005690 ! part of 3rd arch mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: BFO:0000050 UBERON:0005690 ! part of 3rd arch mesenchyme [Term] id: UBERON:0010256 name: 4th arch mesenchyme from neural crest is_a: UBERON:0005691 ! 4th arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005691 ! part of 4th arch mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: BFO:0000050 UBERON:0005691 ! part of 4th arch mesenchyme relationship: BFO:0000050 UBERON:0010258 ! part of mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010257 name: 6th arch mesenchyme from neural crest is_a: UBERON:0010031 ! 6th arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0010031 ! part of 6th arch mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: BFO:0000050 UBERON:0010031 ! part of 6th arch mesenchyme relationship: BFO:0000050 UBERON:0010258 ! part of mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010258 name: mesenchyme from rhombencephalic neural crest is_a: UBERON:0007213 ! mesenchyme derived from head neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002202 UBERON:0003852 ! develops from rhombencephalon neural crest relationship: BFO:0000050 UBERON:0007213 ! part of mesenchyme derived from head neural crest relationship: RO:0002202 UBERON:0003852 ! develops from rhombencephalon neural crest [Term] id: UBERON:0010259 name: 1st arch mesenchyme from neural crest is_a: UBERON:0010042 ! 1st arch mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0010042 ! part of 1st arch mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: BFO:0000050 UBERON:0010042 ! part of 1st arch mesenchyme [Term] id: UBERON:0010272 name: hyoid apparatus is_a: UBERON:0000075 ! subdivision of skeletal system relationship: BFO:0000050 UBERON:0005884 ! part of hyoid arch skeleton property_value: UBPROP:0000008 "In most mammals, including humans, the hyoid apparatus is shaped like a horseshoe. However, in humans, some of the bones of the hyoid apparatus are fused into a single bone called os hyoideum. In other animals such as frogs, the hyoid apparatus has a hyoid body that is chiefly comprised of hyaline cartilage and two pairs of processes (i.e. alary process and the posteriolateral process)." xsd:string [Term] id: UBERON:0010273 name: zone of hyoid bone is_a: UBERON:0005913 ! zone of bone organ intersection_of: UBERON:0005913 ! zone of bone organ intersection_of: BFO:0000050 UBERON:0001685 ! part of hyoid bone relationship: BFO:0000050 UBERON:0001685 ! part of hyoid bone [Term] id: UBERON:0010285 name: midbrain basal plate is_a: UBERON:0002020 ! gray matter relationship: BFO:0000050 UBERON:0009581 ! part of midbrain mantle layer relationship: BFO:0000050 UBERON:0010286 ! part of midbrain neural tube [Term] id: UBERON:0010286 name: midbrain neural tube is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0003080 ! part of anterior neural tube property_value: IAO:0000116 "we follow ZFA in temporally dividing midbrain NT from presumptive midbrain, but in future this may be collapsed" xsd:string [Term] id: UBERON:0010291 name: layer of sclera is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010313 ! neural crest-derived structure relationship: BFO:0000050 UBERON:0001773 ! part of sclera [Term] id: UBERON:0010294 name: scleral endothelium is_a: UBERON:0001986 ! endothelium is_a: UBERON:0010291 ! layer of sclera is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0001773 ! part of sclera [Term] id: UBERON:0010295 name: substantia propria of sclera is_a: UBERON:0003891 ! stroma is_a: UBERON:0010291 ! layer of sclera intersection_of: UBERON:0003891 ! stroma intersection_of: BFO:0000050 UBERON:0001773 ! part of sclera [Term] id: UBERON:0010299 name: scleral mesenchyme is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002387 UBERON:0001773 ! has potential to develop into sclera relationship: RO:0002221 UBERON:0003072 ! surrounds optic cup relationship: RO:0002387 UBERON:0001773 ! has potential to develop into sclera property_value: UBPROP:0000011 "The mesenchyme surrounding the developing optic cup differentiates into the sclera, the dense fibrous coat of the eye.. http://www.ncbi.nlm.nih.gov/pubmed/16496288" xsd:string [Term] id: UBERON:0010303 name: extraembryonic epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005292 ! extraembryonic tissue intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000478 ! part of extraembryonic structure relationship: BFO:0000050 UBERON:0000478 ! part of extraembryonic structure [Term] id: UBERON:0010304 name: non-keratinized stratified squamous epithelium is_a: UBERON:0006915 ! stratified squamous epithelium [Term] id: UBERON:0010312 name: immature eye is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: RO:0002254 UBERON:0003071 ! has developmental contribution from eye primordium relationship: RO:0002202 UBERON:0003071 ! develops from eye primordium relationship: RO:0002254 UBERON:0003071 ! has developmental contribution from eye primordium [Term] id: UBERON:0010313 name: neural crest-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: RO:0002202 UBERON:0002342 ! develops from neural crest property_value: IAO:0000232 "Grouping term for query purposes" xsd:string [Term] id: UBERON:0010314 name: structure with developmental contribution from neural crest is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0002254 UBERON:0002342 ! has developmental contribution from neural crest relationship: RO:0002254 UBERON:0002342 ! has developmental contribution from neural crest property_value: IAO:0000232 "Grouping term for query purposes" xsd:string [Term] id: UBERON:0010316 name: germ layer / neural crest is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue relationship: RO:0002202 UBERON:0002532 ! develops from epiblast (generic) [Term] id: UBERON:0010321 name: skeletal element of eye region is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0004765 ! skeletal element intersection_of: BFO:0000050 UBERON:0004088 ! part of orbital region relationship: BFO:0000050 UBERON:0004088 ! part of orbital region relationship: BFO:0000050 UBERON:0011156 ! part of facial skeleton [Term] id: UBERON:0010323 name: cranial skeletal system is_a: UBERON:0000075 ! subdivision of skeletal system relationship: BFO:0000050 UBERON:0011137 ! part of axial skeletal system relationship: RO:0002160 NCBITaxon:89593 ! only in taxon Craniata property_value: IAO:0000116 "we use 'cranial skeletal system', so that we can include the skull, which has joints/sutures as parts (recall, we follow FMA in distinguishing between the skeleton and skeletal system - only the latter includes joints)" xsd:string property_value: IAO:0000232 "that the cranial skeleton includes the pharyngeal arch skeleton. It is thus more inclusive that the cranium itself, and extends beyond the head in tetrapods. The AAO class called 'skull' belongs here, as it includes the whole splanchnocranium" xsd:string [Term] id: UBERON:0010328 name: limb bud mesenchyme is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0004347 ! part of limb bud relationship: BFO:0000050 UBERON:0004347 ! part of limb bud [Term] id: UBERON:0010329 name: paired limb/fin bud mesenchyme is_a: UBERON:0010377 ! mesenchyme from somatopleure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0004357 ! part of paired limb/fin bud relationship: BFO:0000050 UBERON:0004357 ! part of paired limb/fin bud relationship: RO:0002202 UBERON:0010377 ! develops from mesenchyme from somatopleure [Term] id: UBERON:0010333 name: extraembryonic membrane mesenchyme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005631 ! part of extraembryonic membrane relationship: BFO:0000050 UBERON:0005631 ! part of extraembryonic membrane relationship: RO:0002202 UBERON:0005728 ! develops from extraembryonic mesoderm [Term] id: UBERON:0010336 name: mandibular process mesenchyme from neural crest is_a: UBERON:0006905 ! mandibular process mesenchyme is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0006905 ! part of mandibular process mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: BFO:0000050 UBERON:0006905 ! part of mandibular process mesenchyme relationship: RO:0002202 UBERON:0010252 ! develops from 1st arch mandibular mesenchyme from neural crest [Term] id: UBERON:0010337 name: mandibular process mesenchyme from head mesenchyme is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0006905 ! mandibular process mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0006905 ! part of mandibular process mesenchyme intersection_of: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: BFO:0000050 UBERON:0006905 ! part of mandibular process mesenchyme relationship: RO:0002202 UBERON:0010339 ! develops from 1st arch mandibular mesenchyme from head mesenchyme [Term] id: UBERON:0010339 name: 1st arch mandibular mesenchyme from head mesenchyme is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0009584 ! part of 1st arch mandibular mesenchyme intersection_of: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: BFO:0000050 UBERON:0009584 ! part of 1st arch mandibular mesenchyme [Term] id: UBERON:0010341 name: 1st arch mesenchyme from head mesenchyme is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010042 ! 1st arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0010042 ! part of 1st arch mesenchyme intersection_of: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: BFO:0000050 UBERON:0010042 ! part of 1st arch mesenchyme [Term] id: UBERON:0010343 name: 2nd arch mesenchyme from head mesenchyme is_a: UBERON:0005689 ! 2nd arch mesenchyme is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005689 ! part of 2nd arch mesenchyme intersection_of: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: BFO:0000050 UBERON:0005689 ! part of 2nd arch mesenchyme [Term] id: UBERON:0010344 name: 3rd arch mesenchyme from head mesenchyme is_a: UBERON:0005690 ! 3rd arch mesenchyme is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005690 ! part of 3rd arch mesenchyme intersection_of: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: BFO:0000050 UBERON:0005690 ! part of 3rd arch mesenchyme [Term] id: UBERON:0010345 name: 4th arch mesenchyme from head mesenchyme is_a: UBERON:0005691 ! 4th arch mesenchyme is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0005691 ! part of 4th arch mesenchyme intersection_of: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: BFO:0000050 UBERON:0005691 ! part of 4th arch mesenchyme [Term] id: UBERON:0010347 name: 6th arch mesenchyme from head mesenchyme is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010031 ! 6th arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0010031 ! part of 6th arch mesenchyme intersection_of: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: BFO:0000050 UBERON:0010031 ! part of 6th arch mesenchyme [Term] id: UBERON:0010359 name: pharyngeal arch mesenchyme from neural crest comment: Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest relationship: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme [Term] id: UBERON:0010360 name: pharyngeal arch mesenchyme from head mesenchyme comment: Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme intersection_of: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm relationship: BFO:0000050 UBERON:0010046 ! part of entire pharyngeal arch associated mesenchyme relationship: RO:0002202 UBERON:0006904 ! develops from head mesenchyme from mesoderm [Term] id: UBERON:0010362 name: endoskeleton is_a: UBERON:0010912 ! subdivision of skeleton relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002473 UBERON:0010522 ! composed primarily of replacement element [Term] id: UBERON:0010363 name: endochondral element is_a: UBERON:0004765 ! skeletal element property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern" xsd:anyURI [Term] id: UBERON:0010364 name: dermal skeleton comment: This ontology covers metazoa, so we do not use exoskeleton as primary label, as in VSAO is_a: UBERON:0010912 ! subdivision of skeleton relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: UBERON:0010368 name: pulmonary lobule is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000051 UBERON:0002187 ! has part terminal bronchiole [Term] id: UBERON:0010371 name: ecto-epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000483 ! epithelium intersection_of: RO:0002202 UBERON:0000924 ! develops from ectoderm [Term] id: UBERON:0010375 name: pancreas dorsal primordium is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0001048 ! primordium intersection_of: RO:0002387 UBERON:0009708 ! has potential to develop into dorsal pancreas relationship: BFO:0000050 UBERON:0003921 ! part of pancreas primordium relationship: RO:0002387 UBERON:0009708 ! has potential to develop into dorsal pancreas property_value: IAO:0000116 "consider merging with dorsal pancreatic bud. Starts at CS12 in human (EHDAA2, embryology.ch 'bud anlagen')" xsd:string [Term] id: UBERON:0010376 name: pancreas ventral primordium is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0001048 ! primordium intersection_of: RO:0002387 UBERON:0009709 ! has potential to develop into ventral pancreas relationship: BFO:0000050 UBERON:0003921 ! part of pancreas primordium relationship: RO:0002387 UBERON:0009709 ! has potential to develop into ventral pancreas property_value: UBPROP:0000008 "Starts at CS14 in human (EHDAA2) or CS13-14 (embryology.ch 'bud anlagen')" xsd:string [Term] id: UBERON:0010377 name: mesenchyme from somatopleure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo intersection_of: RO:0002202 UBERON:0004874 ! develops from somatopleure relationship: BFO:0000050 UBERON:0009142 ! part of entire embryonic mesenchyme relationship: RO:0002202 UBERON:0004874 ! develops from somatopleure property_value: IAO:0000116 "the way this class is defined also includes extraembryonic mesenchyme such as the amniotic mesenchyme; in future this may be restricted to embryonic derivatives" xsd:string [Term] id: UBERON:0010378 name: mesenchyme from splanchnopleure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000922 ! part of embryo intersection_of: RO:0002202 UBERON:0004873 ! develops from splanchnopleure relationship: BFO:0000050 UBERON:0009142 ! part of entire embryonic mesenchyme relationship: RO:0002202 UBERON:0004873 ! develops from splanchnopleure [Term] id: UBERON:0010390 name: lumen of urethra is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000057 ! luminal space of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra relationship: RO:0002572 UBERON:0000057 ! luminal space of urethra [Term] id: UBERON:0010409 name: ocular surface region is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: BSPO:0000108 UBERON:0022288 ! surface of eyeball [Term] id: UBERON:0010418 name: urethral opening is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: BFO:0000050 UBERON:0001556 ! part of lower urinary tract relationship: BFO:0000050 UBERON:0001556 ! part of lower urinary tract [Term] id: UBERON:0010427 name: ciliary processes is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 UBERON:0001775 ! part of ciliary body property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png" xsd:anyURI [Term] id: UBERON:0010428 name: flat bone comment: Examples: cranium, the ilium, sternum, rib cage, the sacrum and the scapula; the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs is_a: UBERON:0001474 ! bone element relationship: RO:0000086 PATO:0000407 ! has quality flat property_value: UBPROP:0000008 "In an adult mammal, most red blood cells are formed in flat bones" xsd:string property_value: UBPROP:0000009 "Flat bones are those bones which are found where the principal requirement is either extensive protection or the provision of broad surfaces for muscular attachment" xsd:string [Term] id: UBERON:0010498 name: pseudostratified columnar epithelium is_a: UBERON:0000485 ! simple columnar epithelium property_value: UBPROP:0000009 "Pseudostratified epithelia function in secretion or absorption. If a specimen looks stratified but has cilia, then it is a pseudostratified ciliated epithelium, since stratified epithelia do not have cilia." xsd:string [Term] id: UBERON:0010499 name: pseudostratified ciliated columnar epithelium is_a: UBERON:0007592 ! ciliated columnar epithelium is_a: UBERON:0010498 ! pseudostratified columnar epithelium [Term] id: UBERON:0010522 name: replacement element is_a: UBERON:0004765 ! skeletal element relationship: BFO:0000050 UBERON:0010362 ! part of endoskeleton [Term] id: UBERON:0010523 name: microcirculatory vessel is_a: UBERON:0000055 ! vessel relationship: BFO:0000050 UBERON:0002049 ! part of vasculature [Term] id: UBERON:0010527 name: cavity of bone organ is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element relationship: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:0010528 name: pneumatic cavity of bone is_a: UBERON:0010527 ! cavity of bone organ relationship: BFO:0000050 UBERON:0008193 ! part of pneumatized bone [Term] id: UBERON:0010531 name: metanephros induced blastemal cells is_a: UBERON:0005423 ! developing anatomical structure relationship: BFO:0000050 UBERON:0009871 ! part of nephrogenic zone relationship: RO:0002202 UBERON:0003220 ! develops from metanephric mesenchyme relationship: RO:0002256 UBERON:0000084 ! developmentally induced by ureteric bud [Term] id: UBERON:0010532 name: primitive nephron is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube relationship: RO:0001025 UBERON:0003918 ! located in kidney mesenchyme relationship: RO:0002202 UBERON:0004209 ! develops from renal vesicle relationship: RO:0002387 UBERON:0001285 ! has potential to develop into nephron [Term] id: UBERON:0010533 name: metanephros cortex is_a: UBERON:0001225 ! cortex of kidney is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001225 ! cortex of kidney intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: RO:0002202 UBERON:0005113 ! develops from metanephric cortex mesenchyme [Term] id: UBERON:0010534 name: primitive mesonephric nephron is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0010532 ! primitive nephron intersection_of: UBERON:0010532 ! primitive nephron intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0010535 name: primitive metanephric nephron is_a: UBERON:0005106 ! metanephric tubule is_a: UBERON:0010532 ! primitive nephron intersection_of: UBERON:0010532 ! primitive nephron intersection_of: BFO:0000050 UBERON:0000081 ! part of metanephros relationship: BFO:0000050 UBERON:0005113 ! part of metanephric cortex mesenchyme [Term] id: UBERON:0010536 name: nephron progenitor is_a: UBERON:0000479 ! tissue relationship: BFO:0000050 UBERON:0003918 ! part of kidney mesenchyme relationship: RO:0002387 UBERON:0001285 ! has potential to develop into nephron [Term] id: UBERON:0010537 name: mesonephric nephron progenitor is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010536 ! nephron progenitor intersection_of: UBERON:0010536 ! nephron progenitor intersection_of: BFO:0000050 UBERON:0000080 ! part of mesonephros relationship: BFO:0000050 UBERON:0000080 ! part of mesonephros [Term] id: UBERON:0010707 name: appendage girdle complex is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0015212 ! lateral structure relationship: BSPO:0000126 UBERON:0000468 ! multicellular organism relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002328 GO:0040011 ! functionally related to locomotion property_value: IAO:0000116 "It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO]" xsd:string [Term] id: UBERON:0010708 name: pectoral complex is_a: UBERON:0010707 ! appendage girdle complex intersection_of: UBERON:0010707 ! appendage girdle complex intersection_of: BFO:0000051 UBERON:0001421 ! has part pectoral girdle region relationship: BFO:0000050 UBERON:0000153 {gci_filler="NCBITaxon:32523", gci_relation="BFO:0000050"} ! part of anterior region of body relationship: BFO:0000051 UBERON:0001421 ! has part pectoral girdle region relationship: RO:0002551 UBERON:0012475 ! has skeleton skeleton of pectoral complex [Term] id: UBERON:0010709 name: pelvic complex is_a: UBERON:0010707 ! appendage girdle complex intersection_of: UBERON:0010707 ! appendage girdle complex intersection_of: BFO:0000051 UBERON:0001271 ! has part pelvic girdle region relationship: BFO:0000050 UBERON:0000154 {gci_filler="NCBITaxon:32523", gci_relation="BFO:0000050"} ! part of posterior region of body relationship: BFO:0000051 UBERON:0001271 ! has part pelvic girdle region relationship: RO:0002551 UBERON:0012476 ! has skeleton skeleton of pelvic complex property_value: RO:0002171 UBERON:0010708 [Term] id: UBERON:0010712 name: limb skeleton subdivision is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton relationship: BFO:0000050 UBERON:0002101 ! part of limb property_value: IAO:0000116 "note the distinction between this and skeleton of limb" xsd:string [Term] id: UBERON:0010719 name: girdle skeleton is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0007823 ! skeleton of appendage girdle region relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton relationship: BFO:0000050 UBERON:0007823 ! part of appendage girdle region relationship: proximally_connected_to UBERON:0002090 ! postcranial axial skeleton relationship: RO:0002576 UBERON:0007823 ! skeleton of appendage girdle region [Term] id: UBERON:0010740 name: bone of appendage girdle complex is_a: UBERON:0001474 ! bone element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton relationship: BFO:0000050 UBERON:0010707 ! part of appendage girdle complex relationship: RO:0002433 UBERON:0002091 ! contributes to morphology of appendicular skeleton [Term] id: UBERON:0010741 name: bone of pectoral complex is_a: UBERON:0010740 ! bone of appendage girdle complex intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex property_value: IAO:0000116 "considering adding pectoral and pelvic complex skeleton classes" xsd:string [Term] id: UBERON:0010742 name: bone of pelvic complex is_a: UBERON:0010740 ! bone of appendage girdle complex intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex [Term] id: UBERON:0010743 name: meningeal cluster is_a: UBERON:0034925 ! anatomical collection intersection_of: UBERON:0034925 ! anatomical collection intersection_of: RO:0002007 UBERON:0001017 ! bounding layer of central nervous system intersection_of: RO:0002351 UBERON:0002360 ! has member meninx relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: RO:0002007 UBERON:0001017 ! bounding layer of central nervous system relationship: RO:0002351 UBERON:0002360 ! has member meninx property_value: UBPROP:0000007 "meningeal" xsd:string property_value: UBPROP:0000008 "In some primitive organisms, the meningeal cluster includes only the primitive meninx" xsd:string [Term] id: UBERON:0010881 name: limb cartilage element is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0015061 ! limb endochondral element intersection_of: RO:0002473 UBERON:0002418 ! composed primarily of cartilage tissue relationship: RO:0002202 UBERON:0010882 ! develops from limb bone pre-cartilage condensation [Term] id: UBERON:0010882 name: limb bone pre-cartilage condensation is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0015061 ! limb endochondral element intersection_of: RO:0002473 UBERON:0005866 ! composed primarily of pre-cartilage condensation relationship: RO:0002473 UBERON:0005866 ! composed primarily of pre-cartilage condensation [Term] id: UBERON:0010883 name: forelimb cartilage element is_a: UBERON:0010881 ! limb cartilage element is_a: UBERON:0015021 ! forelimb endochondral element intersection_of: UBERON:0015021 ! forelimb endochondral element intersection_of: RO:0002473 UBERON:0002418 ! composed primarily of cartilage tissue relationship: RO:0002202 UBERON:0010884 ! develops from forelimb bone pre-cartilage condensation [Term] id: UBERON:0010884 name: forelimb bone pre-cartilage condensation is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0015021 ! forelimb endochondral element intersection_of: UBERON:0015021 ! forelimb endochondral element intersection_of: RO:0002473 UBERON:0005866 ! composed primarily of pre-cartilage condensation [Term] id: UBERON:0010885 name: hindlimb cartilage element is_a: UBERON:0010881 ! limb cartilage element is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0015022 ! hindlimb endochondral element intersection_of: RO:0002473 UBERON:0002418 ! composed primarily of cartilage tissue relationship: RO:0002202 UBERON:0010886 ! develops from hindlimb pre-cartilage condensation [Term] id: UBERON:0010886 name: hindlimb pre-cartilage condensation is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0015022 ! hindlimb endochondral element intersection_of: RO:0002473 UBERON:0005866 ! composed primarily of pre-cartilage condensation [Term] id: UBERON:0010890 name: pelvic complex muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex relationship: BFO:0000050 UBERON:0014792 ! part of musculature of pelvic complex [Term] id: UBERON:0010891 name: pectoral complex muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex relationship: BFO:0000050 UBERON:0014793 ! part of musculature of pectoral complex property_value: IAO:0000116 "the MA class belongs here, based on its current child classes" xsd:string [Term] id: UBERON:0010912 name: subdivision of skeleton is_a: UBERON:0011216 ! organ system subdivision relationship: BFO:0000050 UBERON:0000075 ! part of subdivision of skeletal system relationship: BFO:0000050 UBERON:0004288 ! part of skeleton [Term] id: UBERON:0010959 name: craniocervical muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region relationship: BFO:0000050 UBERON:0008229 ! part of craniocervical region musculature [Term] id: UBERON:0011004 name: pharyngeal arch cartilage is_a: UBERON:0003933 ! cranial cartilage intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0008895 ! part of splanchnocranium relationship: BFO:0000050 UBERON:0008895 ! part of splanchnocranium relationship: RO:0002202 UBERON:0002539 ! develops from pharyngeal arch [Term] id: UBERON:0011090 name: skeleton of right pelvic girdle is_a: UBERON:0007832 ! pelvic girdle skeleton intersection_of: UBERON:0007832 ! pelvic girdle skeleton intersection_of: BFO:0000050 UBERON:0011092 ! part of right pelvic girdle region relationship: BFO:0000050 UBERON:0011092 ! part of right pelvic girdle region [Term] id: UBERON:0011091 name: skeleton of left pelvic girdle is_a: UBERON:0007832 ! pelvic girdle skeleton intersection_of: UBERON:0007832 ! pelvic girdle skeleton intersection_of: BFO:0000050 UBERON:0011093 ! part of left pelvic girdle region relationship: BFO:0000050 UBERON:0011093 ! part of left pelvic girdle region [Term] id: UBERON:0011092 name: right pelvic girdle region is_a: UBERON:0001271 ! pelvic girdle region intersection_of: UBERON:0001271 ! pelvic girdle region intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: RO:0002551 UBERON:0011090 ! has skeleton skeleton of right pelvic girdle property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0011093 name: left pelvic girdle region is_a: UBERON:0001271 ! pelvic girdle region intersection_of: UBERON:0001271 ! pelvic girdle region intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: RO:0002551 UBERON:0011091 ! has skeleton skeleton of left pelvic girdle property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:0011096 name: lacrimal nerve is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region intersection_of: UBERON:0001021 ! nerve intersection_of: RO:0002134 UBERON:0001817 ! innervates lacrimal gland relationship: BFO:0000050 UBERON:0000348 ! part of ophthalmic nerve relationship: RO:0002134 UBERON:0001817 ! innervates lacrimal gland relationship: RO:0002380 UBERON:0000348 ! branching part of ophthalmic nerve [Term] id: UBERON:0011107 name: synovial joint of pelvic girdle is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0008114 ! joint of girdle intersection_of: UBERON:0002217 ! synovial joint intersection_of: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region relationship: BFO:0000050 UBERON:0001271 ! part of pelvic girdle region relationship: RO:0002176 UBERON:0007830 ! connects pelvic girdle bone/zone [Term] id: UBERON:0011108 name: synovial joint of pectoral girdle is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0008114 ! joint of girdle intersection_of: UBERON:0002217 ! synovial joint intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region relationship: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region relationship: RO:0002176 UBERON:0007829 ! connects pectoral girdle bone [Term] id: UBERON:0011120 name: laryngeal joint is_a: UBERON:0002217 ! synovial joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: RO:0002176 UBERON:0001739 ! connects laryngeal cartilage relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system relationship: RO:0002176 UBERON:0001739 ! connects laryngeal cartilage [Term] id: UBERON:0011134 name: nonsynovial joint is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0011137 name: axial skeletal system is_a: UBERON:0000075 ! subdivision of skeletal system relationship: BFO:0000051 UBERON:0000982 ! has part skeletal joint relationship: BFO:0000051 UBERON:0005944 ! has part axial skeleton plus cranial skeleton property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] id: UBERON:0011138 name: postcranial axial skeletal system is_a: UBERON:0000075 ! subdivision of skeletal system relationship: RO:0002202 UBERON:0003089 ! develops from sclerotome property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] id: UBERON:0011139 name: synovial limb joint comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses. is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003657 ! limb joint intersection_of: UBERON:0002217 ! synovial joint intersection_of: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:0011143 name: upper urinary tract is_a: UBERON:0011216 ! organ system subdivision is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 UBERON:0001008 ! part of renal system relationship: BFO:0000051 UBERON:0000056 ! has part ureter relationship: BFO:0000051 UBERON:0002113 ! has part kidney relationship: BSPO:0000126 UBERON:0001008 ! renal system [Term] id: UBERON:0011148 name: submucosal gland is_a: UBERON:0000414 ! mucous gland intersection_of: UBERON:0000414 ! mucous gland intersection_of: RO:0001025 UBERON:0000009 ! located in submucosa relationship: RO:0001025 UBERON:0000009 ! located in submucosa relationship: RO:0002150 UBERON:0003350 ! continuous with epithelium of mucosa [Term] id: UBERON:0011156 name: facial skeleton is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011158 ! primary subdivision of skull relationship: BFO:0000050 UBERON:0001456 ! part of face property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg" xsd:anyURI [Term] id: UBERON:0011158 name: primary subdivision of skull is_a: UBERON:0000075 ! subdivision of skeletal system relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:0011159 name: primary subdivision of cranial skeletal system is_a: UBERON:0000075 ! subdivision of skeletal system relationship: BFO:0000050 UBERON:0010323 ! part of cranial skeletal system [Term] id: UBERON:0011164 name: neurocranium bone is_a: UBERON:0004766 ! cranial bone intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0001703 ! part of neurocranium relationship: BFO:0000050 UBERON:0001703 ! part of neurocranium [Term] id: UBERON:0011185 name: gastrointestinal sphincter is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system relationship: BFO:0000050 UBERON:0005409 ! part of alimentary part of gastrointestinal system [Term] id: UBERON:0011189 name: lamina propria of large intestine is_a: UBERON:0004780 ! gastrointestinal system lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0001207 ! part of mucosa of large intestine property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011191 name: ophthalmic vein is_a: UBERON:0009141 ! craniocervical region vein property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png" xsd:anyURI [Term] id: UBERON:0011192 name: superior ophthalmic vein is_a: UBERON:0011191 ! ophthalmic vein relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0003712 ! connected to cavernous sinus property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png" xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011198 name: muscle layer of large intestine is_a: UBERON:0012367 ! muscle layer of intestine intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000050 UBERON:0001169 ! part of wall of large intestine [Term] id: UBERON:0011201 name: muscle layer of small intestine is_a: UBERON:0012367 ! muscle layer of intestine intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0001168 ! part of wall of small intestine [Term] id: UBERON:0011215 name: central nervous system cell part cluster is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005162 ! multi cell part structure intersection_of: UBERON:0005162 ! multi cell part structure intersection_of: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0011216 name: organ system subdivision is_a: UBERON:0010000 ! multicellular anatomical structure relationship: BFO:0000050 UBERON:0000467 ! part of anatomical system property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0011222 name: intra-ocular muscle is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004277 ! eye muscle relationship: BFO:0000050 UBERON:0003386 ! part of smooth muscle of eye [Term] id: UBERON:0011233 name: synovial membrane of synovial tendon sheath comment: Alternate def: A synovial sheath is a layer of a tendon sheath containing tendons in the hand and foot. They lie internal to the fibrous tendon sheaths. An example is the common synovial sheath for the flexor tendons. [Wikipedia:Synovial_sheath] is_a: UBERON:0007616 ! layer of synovial tissue intersection_of: UBERON:0007616 ! layer of synovial tissue intersection_of: RO:0002007 UBERON:0000304 ! bounding layer of tendon sheath relationship: BFO:0000050 UBERON:0000304 ! part of tendon sheath relationship: RO:0002007 UBERON:0000304 ! bounding layer of tendon sheath [Term] id: UBERON:0011234 name: fibrous membrane of synovial tendon sheath is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: RO:0002007 UBERON:0000304 ! bounding layer of tendon sheath intersection_of: RO:0002473 UBERON:0011824 ! composed primarily of fibrous connective tissue relationship: BFO:0000050 UBERON:0000304 ! part of tendon sheath relationship: RO:0002007 UBERON:0000304 ! bounding layer of tendon sheath relationship: RO:0002473 UBERON:0011824 ! composed primarily of fibrous connective tissue [Term] id: UBERON:0011249 name: appendicular skeletal system is_a: UBERON:0000075 ! subdivision of skeletal system relationship: BFO:0000051 UBERON:0000982 ! has part skeletal joint relationship: BFO:0000051 UBERON:0002091 ! has part appendicular skeleton property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Appendages-and-the-appendicular-skeleton" xsd:anyURI [Term] id: UBERON:0011270 name: dorsal trunk is_a: UBERON:0009569 ! subdivision of trunk relationship: BFO:0000050 UBERON:0001137 ! part of dorsum property_value: UBPROP:0000008 "In humans, the subdivision of trunk which is demarcated from the trunk proper by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall; together with the trunk proper, it constitutes the trunk[FMA]" xsd:string [Term] id: UBERON:0011272 name: embryonic skin basal layer is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium relationship: BFO:0000050 UBERON:0002199 ! part of integument relationship: RO:0002202 UBERON:0000076 ! develops from external ectoderm property_value: IAO:0000116 "compare with 'stratum basale of epidermis'. This class is the source for many adult structures - see WP2062. See also: 'enveloping layer of ectoderm'" xsd:string [Term] id: UBERON:0011332 name: extrinsic tongue pre-muscle mass is_a: UBERON:0005865 ! pre-muscle condensation intersection_of: UBERON:0005865 ! pre-muscle condensation intersection_of: RO:0002387 UBERON:0001575 ! has potential to develop into extrinsic muscle of tongue relationship: RO:0002387 UBERON:0001575 ! has potential to develop into extrinsic muscle of tongue [Term] id: UBERON:0011362 name: cranial blood vasculature is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004537 ! blood vasculature intersection_of: UBERON:0004537 ! blood vasculature intersection_of: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0011565 name: lumen of gastrointestinal system is_a: UBERON:0002553 ! anatomical cavity relationship: BFO:0000050 UBERON:0001007 ! part of digestive system [Term] id: UBERON:0011566 name: lumen of esophagus is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0001043 ! luminal space of esophagus relationship: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0011565 ! part of lumen of gastrointestinal system relationship: RO:0002572 UBERON:0001043 ! luminal space of esophagus [Term] id: UBERON:0011574 name: mesonephric duct lumen is_a: UBERON:0005082 ! tube lumen intersection_of: UBERON:0005082 ! tube lumen intersection_of: RO:0002572 UBERON:0003074 ! luminal space of mesonephric duct relationship: BFO:0000050 UBERON:0003074 ! part of mesonephric duct relationship: RO:0002572 UBERON:0003074 ! luminal space of mesonephric duct [Term] id: UBERON:0011582 name: paired limb/fin skeleton is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0004708 ! skeleton of paired limb/fin relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton relationship: BFO:0000050 UBERON:0004708 ! part of paired limb/fin relationship: RO:0002202 UBERON:0003081 ! develops from lateral plate mesoderm relationship: RO:0002576 UBERON:0004708 ! skeleton of paired limb/fin [Term] id: UBERON:0011585 name: cell condensation is_a: UBERON:0000061 ! anatomical structure property_value: IAO:0000116 "consider obsoleting, coordinate with VSAO" xsd:string [Term] id: UBERON:0011595 name: jaw region is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000475 ! organism subdivision intersection_of: RO:0002551 UBERON:0001708 ! has skeleton jaw skeleton relationship: BFO:0000050 UBERON:0000165 ! part of mouth relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata relationship: RO:0002551 UBERON:0001708 ! has skeleton jaw skeleton property_value: seeAlso "http://eol.org/collections/11578" xsd:anyURI [Term] id: UBERON:0011596 name: future lower lip is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003236 ! epithelium of lower jaw relationship: RO:0002202 UBERON:0005867 ! develops from mandibular prominence [Term] id: UBERON:0011642 name: oral epithelium from ectoderm is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002424 ! part of oral epithelium intersection_of: RO:0002202 UBERON:0000924 ! develops from ectoderm relationship: BFO:0000050 UBERON:0002424 ! part of oral epithelium relationship: RO:0002202 UBERON:0009479 ! develops from ectoderm of buccopharyngeal membrane [Term] id: UBERON:0011648 name: jaw muscle is_a: UBERON:0002376 ! cranial muscle relationship: RO:0002216 GO:0071626 ! capable of part of mastication [Term] id: UBERON:0011676 name: subdivision of organism along main body axis is_a: UBERON:0000475 ! organism subdivision relationship: BFO:0000050 UBERON:0013701 ! part of main body axis property_value: IAO:0000116 "Ideally this would be disjoint with analagous class for appendicular axes, but currently 'appendages' like antennae, horns cause a problem" xsd:string [Term] id: UBERON:0011695 name: embryonic cardiovascular system is_a: UBERON:0004535 ! cardiovascular system intersection_of: UBERON:0004535 ! cardiovascular system intersection_of: BFO:0000050 UBERON:0004716 ! part of conceptus relationship: BFO:0000050 UBERON:0004716 ! part of conceptus [Term] id: UBERON:0011766 name: left recurrent laryngeal nerve is_a: UBERON:0003716 ! recurrent laryngeal nerve is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0003716 ! recurrent laryngeal nerve intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism property_value: depicted:by "https://upload.wikimedia.org/wikipedia/commons/6/64/Recurrent_laryngeal_nerve.svg" xsd:anyURI property_value: UBPROP:0000008 "The left nerve is longer than the right, because it crosses under the arch of the aorta at the ligamentum arteriosum.[WP]" xsd:string [Term] id: UBERON:0011767 name: right recurrent laryngeal nerve is_a: UBERON:0003716 ! recurrent laryngeal nerve is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0003716 ! recurrent laryngeal nerve intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism [Term] id: UBERON:0011772 name: lower jaw opening is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0004768 ! luminal space of bone of lower jaw relationship: BFO:0000050 UBERON:0004768 ! part of bone of lower jaw relationship: RO:0002572 UBERON:0004768 ! luminal space of bone of lower jaw [Term] id: UBERON:0011775 name: vagus nerve nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0009662 ! hindbrain nucleus intersection_of: UBERON:0000126 ! cranial nerve nucleus intersection_of: extends_fibers_into UBERON:0001759 ! vagus nerve relationship: extends_fibers_into UBERON:0001759 ! vagus nerve [Term] id: UBERON:0011777 name: nucleus of spinal cord is_a: UBERON:0000125 ! neural nucleus intersection_of: UBERON:0000125 ! neural nucleus intersection_of: BFO:0000050 UBERON:0002240 ! part of spinal cord relationship: BFO:0000050 UBERON:0002240 ! part of spinal cord [Term] id: UBERON:0011779 name: nerve of head region is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:0011814 name: non-neurogenic ectodermal placode is_a: UBERON:0005085 ! ectodermal placode [Term] id: UBERON:0011820 name: atrioventricular region is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: BFO:0000050 UBERON:0000948 ! part of heart intersection_of: RO:0002176 UBERON:0002081 ! connects cardiac atrium intersection_of: RO:0002176 UBERON:0002082 ! connects cardiac ventricle relationship: BFO:0000050 UBERON:0000948 ! part of heart relationship: RO:0002176 UBERON:0002081 ! connects cardiac atrium relationship: RO:0002176 UBERON:0002082 ! connects cardiac ventricle property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011821 name: irregular connective tissue is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0011822 name: dense irregular connective tissue is_a: UBERON:0011821 ! irregular connective tissue is_a: UBERON:0011823 ! dense connective tissue intersection_of: UBERON:0011821 ! irregular connective tissue intersection_of: BFO:0000051 GO:0071953 ! has part elastic fiber intersection_of: RO:0002473 UBERON:0011860 ! composed primarily of collection of collagen fibrils relationship: BFO:0000051 GO:0071953 ! has part elastic fiber [Term] id: UBERON:0011823 name: dense connective tissue is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: RO:0002473 UBERON:0011860 ! composed primarily of collection of collagen fibrils disjoint_from: UBERON:0011825 ! loose connective tissue relationship: RO:0002473 UBERON:0011860 ! composed primarily of collection of collagen fibrils property_value: IAO:0000116 "our OWL definition states that this is differentiated from other connective tissue types by virtue of the fact that the collage fiber component predominates, as opposed to cells and fluid." xsd:string [Term] id: UBERON:0011824 name: fibrous connective tissue is_a: UBERON:0011822 ! dense irregular connective tissue [Term] id: UBERON:0011825 name: loose connective tissue is_a: UBERON:0011821 ! irregular connective tissue [Term] id: UBERON:0011857 name: acinus of lacrimal gland is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: BFO:0000050 UBERON:0001817 ! part of lacrimal gland relationship: BFO:0000050 UBERON:0001817 ! part of lacrimal gland [Term] id: UBERON:0011858 name: acinus of exocrine gland is_a: UBERON:0009842 ! glandular acinus intersection_of: UBERON:0009842 ! glandular acinus intersection_of: BFO:0000050 UBERON:0002365 ! part of exocrine gland relationship: BFO:0000050 UBERON:0002365 ! part of exocrine gland [Term] id: UBERON:0011860 name: collection of collagen fibrils is_a: UBERON:0000476 ! acellular anatomical structure relationship: RO:0002473 GO:0005581 ! composed primarily of collagen trimer relationship: RO:0002473 GO:0098643 ! composed primarily of banded collagen fibril property_value: seeAlso UBERON:0007377 [Term] id: UBERON:0011861 name: aorta collagen fibril is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: BFO:0000050 UBERON:0004664 ! part of aorta tunica adventitia relationship: BFO:0000050 UBERON:0004664 ! part of aorta tunica adventitia relationship: RO:0002433 UBERON:0004664 ! contributes to morphology of aorta tunica adventitia [Term] id: UBERON:0011862 name: pulmonary collagen fibril is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung relationship: RO:0002433 UBERON:0002048 ! contributes to morphology of lung [Term] id: UBERON:0011863 name: bone collagen fibril is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element relationship: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:0011864 name: tendon collagen fibril is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: BFO:0000050 UBERON:0000043 ! part of tendon relationship: BFO:0000050 UBERON:0000043 ! part of tendon relationship: RO:0002433 UBERON:0000043 ! contributes to morphology of tendon [Term] id: UBERON:0011865 name: corneal stroma collagen fibril is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: BFO:0000050 UBERON:0001777 ! part of substantia propria of cornea relationship: BFO:0000050 UBERON:0001777 ! part of substantia propria of cornea relationship: RO:0002433 UBERON:0001777 ! contributes to morphology of substantia propria of cornea [Term] id: UBERON:0011878 name: muscle layer of esophagus is_a: UBERON:0018261 ! muscular coat of digestive tract intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001096 ! part of wall of esophagus relationship: BFO:0000051 UBERON:0001134 ! has part skeletal muscle tissue [Term] id: UBERON:0011892 name: anterior uvea is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0001768 ! part of uvea relationship: BFO:0000051 UBERON:0001769 ! has part iris relationship: BFO:0000051 UBERON:0001775 ! has part ciliary body relationship: RO:0002433 UBERON:0001768 ! contributes to morphology of uvea relationship: RO:0002433 UBERON:0001801 ! contributes to morphology of anterior segment of eyeball [Term] id: UBERON:0011899 name: epimysium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011822 ! dense irregular connective tissue relationship: BFO:0000050 UBERON:0001134 ! part of skeletal muscle tissue relationship: RO:0002007 UBERON:0014892 ! bounding layer of skeletal muscle organ relationship: RO:0002150 UBERON:0000043 ! continuous with tendon property_value: UBPROP:0000009 "The Epimysium also protects muscles from friction against other muscles and bones" xsd:string [Term] id: UBERON:0011919 name: yolk sac blood island is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0003061 ! blood island intersection_of: UBERON:0003061 ! blood island intersection_of: BFO:0000050 UBERON:0003316 ! part of mesenchyme of yolk sac relationship: BFO:0000050 UBERON:0003316 ! part of mesenchyme of yolk sac relationship: RO:0002202 UBERON:0003316 ! develops from mesenchyme of yolk sac [Term] id: UBERON:0011953 name: stomach glandular region is_a: UBERON:0009870 ! zone of stomach intersection_of: UBERON:0009870 ! zone of stomach intersection_of: BFO:0000051 UBERON:0006924 ! has part stomach glandular epithelium relationship: BFO:0000051 UBERON:0006924 ! has part stomach glandular epithelium property_value: IAO:0000116 "as currently defined, this would include the cardiac antrum; however, the intent may be to exclude the cardiac glands and in mice for this to be part of the region distal to the margo plicatus" xsd:string [Term] id: UBERON:0011955 name: left hepatic vein is_a: UBERON:0001143 ! hepatic vein intersection_of: UBERON:0001143 ! hepatic vein intersection_of: BFO:0000050 UBERON:0001115 ! part of left lobe of liver relationship: BFO:0000050 UBERON:0001115 ! part of left lobe of liver property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011956 name: right hepatic vein is_a: UBERON:0001143 ! hepatic vein intersection_of: UBERON:0001143 ! hepatic vein intersection_of: BFO:0000050 UBERON:0001114 ! part of right lobe of liver relationship: BFO:0000050 UBERON:0001114 ! part of right lobe of liver property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0011997 name: coelom is_a: UBERON:0000481 ! multi-tissue structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria property_value: IAO:0000116 "EHDAA2 distingsuishes between the lumen, the lining, and the 'coelomic cavity', which despire it's name, is not a space - it is the aggregate of space plus lining." xsd:string property_value: UBPROP:0000007 "coelomic" xsd:string [Term] id: UBERON:0012054 name: myocoele is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0003082 ! luminal space of myotome relationship: BFO:0000050 UBERON:0003082 ! part of myotome relationship: RO:0002572 UBERON:0003082 ! luminal space of myotome [Term] id: UBERON:0012075 name: replacement bone is_a: UBERON:0001474 ! bone element is_a: UBERON:0010522 ! replacement element [Term] id: UBERON:0012172 name: stomach primordium is_a: UBERON:0001048 ! primordium intersection_of: UBERON:0001048 ! primordium intersection_of: RO:0002387 UBERON:0000945 ! has potential to develop into stomach relationship: BFO:0000050 UBERON:0003258 ! part of endoderm of foregut relationship: RO:0002387 UBERON:0000945 ! has potential to develop into stomach [Term] id: UBERON:0012180 name: head or neck skin is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0007811 ! part of craniocervical region relationship: BFO:0000050 UBERON:0007811 ! part of craniocervical region [Term] id: UBERON:0012240 name: urethral meatus is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010418 ! urethral opening intersection_of: UBERON:0000161 ! orifice intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra intersection_of: RO:0002176 UBERON:0010390 ! connects lumen of urethra intersection_of: RO:0002176 UBERON:0013514 ! connects space surrounding organism relationship: BFO:0000050 UBERON:0000057 ! part of urethra relationship: RO:0002176 UBERON:0010390 ! connects lumen of urethra relationship: RO:0002176 UBERON:0013514 ! connects space surrounding organism [Term] id: UBERON:0012254 name: abdominal aorta artery is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002380 UBERON:0001516 ! branching part of abdominal aorta relationship: BFO:0000050 UBERON:0001516 ! part of abdominal aorta relationship: RO:0002380 UBERON:0001516 ! branching part of abdominal aorta [Term] id: UBERON:0012274 name: columnar epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0012275 name: meso-epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000483 ! epithelium intersection_of: RO:0002202 UBERON:0000926 ! develops from mesoderm [Term] id: UBERON:0012292 name: embryonic cloacal fold comment: We presume this is distinct from AAO:0001003, an external integumentary structure - check with amphibian anatomy ontology developers. AO notes: the text def states mesenchymal swelling, EHDAA2 splits into mesenchymal and epithelial parts is_a: UBERON:0000481 ! multi-tissue structure relationship: BFO:0000050 UBERON:0000922 ! part of embryo relationship: BFO:0000050 UBERON:0012469 ! part of external anal region relationship: RO:0002220 UBERON:0006217 ! adjacent to cloacal membrane [Term] id: UBERON:0012299 name: mucosa of urethra is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0012314 name: embryonic facial prominence is_a: UBERON:0002050 ! embryonic structure relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: UBERON:0012320 name: cervical artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003502 ! neck blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: BFO:0000050 UBERON:0000974 ! part of neck [Term] id: UBERON:0012321 name: deep cervical artery is_a: UBERON:0012320 ! cervical artery intersection_of: UBERON:0012320 ! cervical artery intersection_of: BFO:0000050 UBERON:0035551 ! part of deep vasculature relationship: BFO:0000050 UBERON:0004688 ! part of costo-cervical trunk relationship: BFO:0000050 UBERON:0035551 ! part of deep vasculature relationship: RO:0002380 UBERON:0004688 ! branching part of costo-cervical trunk property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0012324 name: transverse cervical artery is_a: UBERON:0012320 ! cervical artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0012360 name: bone of jaw is_a: UBERON:0003462 ! facial bone is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001474 ! bone element intersection_of: BFO:0000050 UBERON:0011595 ! part of jaw region relationship: BFO:0000050 UBERON:0001708 ! part of jaw skeleton property_value: IAO:0000116 "Do not manually classify under here - bones are automatically classified" xsd:string [Term] id: UBERON:0012361 name: internal anal region is_a: UBERON:0000481 ! multi-tissue structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0012367 name: muscle layer of intestine is_a: UBERON:0018261 ! muscular coat of digestive tract intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine relationship: BFO:0000050 UBERON:0001262 ! part of wall of intestine [Term] id: UBERON:0012375 name: subserosa comment: Contains nerves, blood vessels, lymphatics and lymph nodes is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: RO:0002220 UBERON:0000042 ! adjacent to serous membrane intersection_of: RO:0002473 UBERON:0006815 ! composed primarily of areolar connective tissue relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata relationship: RO:0002220 UBERON:0000042 ! adjacent to serous membrane relationship: RO:0002473 UBERON:0006815 ! composed primarily of areolar connective tissue property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0012378 name: muscle layer of urinary bladder is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0001255 ! part of urinary bladder relationship: BFO:0000050 UBERON:0001256 ! part of wall of urinary bladder relationship: BFO:0000051 UBERON:0004228 ! has part urinary bladder smooth muscle property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0012416 name: respiratory system arterial smooth muscle is_a: UBERON:0004297 ! respiratory system blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0003643 ! part of respiratory system arterial blood vessel relationship: BFO:0000050 UBERON:0003643 ! part of respiratory system arterial blood vessel property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0012418 name: respiratory system venous smooth muscle is_a: UBERON:0004696 ! venous system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0003476 ! part of respiratory system venous blood vessel relationship: BFO:0000050 UBERON:0003476 ! part of respiratory system venous blood vessel property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0012423 name: layer of microvilli is_a: UBERON:0005162 ! multi cell part structure relationship: RO:0002473 GO:0005902 ! composed primarily of microvillus property_value: UBPROP:0000009 "a wide variety of physiological and cellular functions including absorption, secretion, cellular adhesion, and mechanotransduction" xsd:string property_value: UBPROP:0000009 "increases the surface area of a cell lining whilst minimizing increase in volume" xsd:string [Term] id: UBERON:0012425 name: striated border microvillus layer is_a: UBERON:0012423 ! layer of microvilli relationship: BFO:0000050 UBERON:0000160 ! part of intestine [Term] id: UBERON:0012430 name: tunica fibrosa of eyeball is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye relationship: BFO:0000051 UBERON:0000964 ! has part cornea relationship: BFO:0000051 UBERON:0001773 ! has part sclera [Term] id: UBERON:0012463 name: cloacal lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000162 ! luminal space of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0012465 ! part of lumen of terminal part of digestive tract relationship: RO:0002572 UBERON:0000162 ! luminal space of cloaca [Term] id: UBERON:0012464 name: cloacal vent is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012465 name: lumen of terminal part of digestive tract is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0006866 ! luminal space of terminal part of digestive tract relationship: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract relationship: RO:0002572 UBERON:0006866 ! luminal space of terminal part of digestive tract property_value: UBPROP:0000008 "includes the cloacal lumen, in species where this is present" xsd:string [Term] id: UBERON:0012466 name: extraembryonic cavity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component relationship: BFO:0000050 UBERON:0016887 ! part of entire extraembryonic component [Term] id: UBERON:0012467 name: enclosed anatomical space is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0000086 PATO:0000608 ! has quality closed relationship: RO:0000086 PATO:0000608 ! has quality closed [Term] id: UBERON:0012469 name: external anal region is_a: UBERON:0000481 ! multi-tissue structure relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0012475 name: skeleton of pectoral complex is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0010708 ! skeleton of pectoral complex relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex relationship: RO:0002576 UBERON:0010708 ! skeleton of pectoral complex [Term] id: UBERON:0012476 name: skeleton of pelvic complex is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: RO:0002576 UBERON:0010709 ! skeleton of pelvic complex relationship: BFO:0000050 UBERON:0002091 ! part of appendicular skeleton relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex relationship: RO:0002576 UBERON:0010709 ! skeleton of pelvic complex [Term] id: UBERON:0012478 name: cloacal gland is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012480 name: cloacal mucosa is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012481 name: cloacal epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012482 name: submucosa of cloaca is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012483 name: serosa of cloaca is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012485 name: cloacal villus is_a: UBERON:0012423 ! layer of microvilli intersection_of: UBERON:0012423 ! layer of microvilli intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012486 name: muscle layer of cloaca is_a: UBERON:0018261 ! muscular coat of digestive tract intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0012488 name: muscle layer of duodenum is_a: UBERON:0011201 ! muscle layer of small intestine intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0012489 name: muscle layer of colon is_a: UBERON:0011198 ! muscle layer of large intestine intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0001155 ! part of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0012490 name: muscle layer of anal canal is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011198 ! muscle layer of large intestine intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal relationship: BFO:0000050 UBERON:0000159 ! part of anal canal [Term] id: UBERON:0012504 name: adventitia of esophagus is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001043 ! part of esophagus [Term] id: UBERON:0012650 name: gastroduodenal junction is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0000945 ! connects stomach intersection_of: RO:0002176 UBERON:0002114 ! connects duodenum relationship: BFO:0000050 UBERON:0000945 ! part of stomach relationship: RO:0002176 UBERON:0000945 ! connects stomach relationship: RO:0002176 UBERON:0002114 ! connects duodenum [Term] id: UBERON:0012651 name: mucosa of gastroduodenal junction is_a: UBERON:0001199 ! mucosa of stomach intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0012650 ! part of gastroduodenal junction relationship: BFO:0000050 UBERON:0001199 ! part of mucosa of stomach relationship: BFO:0000050 UBERON:0012650 ! part of gastroduodenal junction [Term] id: UBERON:0013126 name: vein of abdomen is_a: UBERON:0001638 ! vein is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen property_value: IAO:0000116 "TODO mirror representation of abdominal aorta" xsd:string property_value: IAO:0000232 "this class groups all veins that are in the abdomen. The term 'abdominal vein' may have specific meanings in different contexts. The lateral abdominal veins are present in fishes but usually merged or absent in tetrapods; in amphibians, the L&R abdominal veins merge into the ventral abdominal vein" xsd:string [Term] id: UBERON:0013136 name: vein of lip is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001833 ! drains lip relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0001833 ! drains lip relationship: RO:0002376 UBERON:0001653 ! tributary of facial vein [Term] id: UBERON:0013140 name: systemic vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: BFO:0000050 UBERON:0004581 ! part of systemic venous system relationship: BFO:0000050 UBERON:0004581 ! part of systemic venous system [Term] id: UBERON:0013156 name: 1st arch mandibular endoderm is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue relationship: BFO:0000050 UBERON:0007237 ! part of 1st arch mandibular component relationship: BFO:0000050 UBERON:0009722 ! part of entire pharyngeal arch endoderm relationship: RO:0002202 UBERON:0007122 ! develops from pharyngeal pouch 1 [Term] id: UBERON:0013158 name: foregut-midgut junction gland is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction relationship: BFO:0000050 UBERON:0006235 ! part of foregut-midgut junction [Term] id: UBERON:0013191 name: ovarian cortex is_a: UBERON:0001851 ! cortex is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001851 ! cortex intersection_of: BFO:0000050 UBERON:0000992 ! part of ovary relationship: BFO:0000050 UBERON:0006960 ! part of ovary stroma property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0013232 name: serous acinus is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: BFO:0000050 UBERON:0000409 ! part of serous gland relationship: BFO:0000050 UBERON:0000409 ! part of serous gland [Term] id: UBERON:0013241 name: embryonic urethral groove is_a: UBERON:0002050 ! embryonic structure relationship: RO:0002202 UBERON:0004876 ! develops from urogenital fold [Term] id: UBERON:0013411 name: cranial cavity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0003129 ! luminal space of skull relationship: BFO:0000050 UBERON:0003129 ! part of skull relationship: RO:0002572 UBERON:0003129 ! luminal space of skull property_value: depicted:by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg" xsd:anyURI [Term] id: UBERON:0013479 name: lung endothelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0004638 ! blood vessel endothelium intersection_of: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0013501 name: cloacal sphincter comment: the muscles of the cloacal sphincter specialise into the perineal muscles in mammals (Gegenbaur, 1883; Popowsky, 1899; Nishi, 1938). is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0014783 ! cloacal muscle intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0013514 name: space surrounding organism is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002221 UBERON:0000468 ! surrounds multicellular organism relationship: RO:0002221 UBERON:0000468 ! surrounds multicellular organism [Term] id: UBERON:0013522 name: subdivision of tube is_a: UBERON:0000064 ! organ part relationship: BFO:0000050 UBERON:0000025 ! part of tube relationship: BFO:0000051 UBERON:0000060 ! has part anatomical wall relationship: BFO:0000051 UBERON:0000464 ! has part anatomical space relationship: subdivision_of UBERON:0000025 ! tube [Term] id: UBERON:0013525 name: stomach lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000945 ! luminal space of stomach relationship: BFO:0000050 UBERON:0000945 ! part of stomach relationship: BFO:0000050 UBERON:0011565 ! part of lumen of gastrointestinal system relationship: RO:0002572 UBERON:0000945 ! luminal space of stomach [Term] id: UBERON:0013636 name: epithelium of intestinal villus is_a: UBERON:0001902 ! epithelium of small intestine intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001213 ! part of intestinal villus relationship: BFO:0000050 UBERON:0001213 ! part of intestinal villus relationship: BFO:0000050 UBERON:0001902 ! part of epithelium of small intestine [Term] id: UBERON:0013685 name: foramen of skull is_a: UBERON:0005744 ! bone foramen intersection_of: UBERON:0005744 ! bone foramen intersection_of: BFO:0000050 UBERON:0003129 ! part of skull relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:0013686 name: anatomical conduit space is_a: UBERON:0000464 ! anatomical space relationship: BFO:0000050 UBERON:0004111 ! part of anatomical conduit relationship: RO:0002176 UBERON:0000464 {cardinality="2"} ! connects anatomical space relationship: RO:0002572 UBERON:0004111 ! luminal space of anatomical conduit property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0013694 name: brain endothelium is_a: UBERON:0001986 ! endothelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0000955 ! part of brain relationship: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:0013695 name: colon endothelium is_a: UBERON:0000397 ! colonic epithelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:0013697 name: exocrine pancreas epithelium is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas relationship: BFO:0000050 UBERON:0000017 ! part of exocrine pancreas [Term] id: UBERON:0013700 name: axial musculature is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0013701 ! part of main body axis intersection_of: RO:0002371 UBERON:0005944 ! attached to axial skeleton plus cranial skeleton relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0013701 ! part of main body axis relationship: RO:0002371 UBERON:0005944 ! attached to axial skeleton plus cranial skeleton [Term] id: UBERON:0013701 name: main body axis is_a: UBERON:0000475 ! organism subdivision relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: UBERON:0013702 name: body proper is_a: UBERON:0000475 ! organism subdivision relationship: BFO:0000050 UBERON:0013701 ! part of main body axis [Term] id: UBERON:0013704 name: notochordal canal is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: BFO:0000050 UBERON:0006268 ! part of notochordal process relationship: BFO:0000050 UBERON:0006268 ! part of notochordal process [Term] id: UBERON:0013727 name: notochordal fluid comment: Distinct feature of coelocanths is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0006314 ! bodily fluid intersection_of: BFO:0000050 UBERON:0036242 ! part of post-embryonic notochord intersection_of: RO:0001025 UBERON:0013704 ! located in notochordal canal relationship: BFO:0000050 UBERON:0036242 ! part of post-embryonic notochord relationship: RO:0001025 UBERON:0013704 ! located in notochordal canal [Term] id: UBERON:0013754 name: integumentary system layer is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system relationship: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0013755 name: arterial blood is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood intersection_of: RO:0001025 UBERON:0001637 ! located in artery relationship: RO:0001025 UBERON:0001637 ! located in artery [Term] id: UBERON:0013756 name: venous blood is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood intersection_of: RO:0001025 UBERON:0001638 ! located in vein relationship: RO:0001025 UBERON:0001638 ! located in vein [Term] id: UBERON:0013757 name: capillary blood is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood intersection_of: RO:0001025 UBERON:0001982 ! located in capillary relationship: RO:0001025 UBERON:0001982 ! located in capillary [Term] id: UBERON:0013765 name: digestive system element is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: BFO:0000050 UBERON:0001007 ! part of digestive system relationship: BFO:0000050 UBERON:0001007 ! part of digestive system [Term] id: UBERON:0013768 name: great vessel of heart comment: Groupings may vary - typically pulmonary vessels and aorta and vena cavae is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0014387 name: mesenchyme derived from neural crest is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: RO:0002202 UBERON:0002342 ! develops from neural crest [Term] id: UBERON:0014388 name: kidney collecting duct epithelium is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0004211 ! nephron epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule relationship: BFO:0000050 UBERON:0001232 ! part of collecting duct of renal tubule relationship: RO:0002433 UBERON:0001232 ! contributes to morphology of collecting duct of renal tubule property_value: UBPROP:0000008 "In mouse, the mature and differentiated CD epithelium comprises two unique cells types with principal cells responsible for vasopressin-regulated water reabsorption, and intercalated cells regulating acid-base homeostasis; injury to the epithelium is believed to cause epithelial cells to acquire mesenchymal characteristics via epithelial-mesenchymal transition (EMT), a process through which tubular epithelial cells may transform into interstitial fibroblasts and promote renal fibrosis" xsd:string [Term] id: UBERON:0014389 name: gustatory papilla of tongue is_a: UBERON:0001726 ! papilla of tongue intersection_of: UBERON:0001726 ! papilla of tongue intersection_of: BFO:0000051 UBERON:0001727 ! has part taste bud relationship: BFO:0000051 UBERON:0001727 ! has part taste bud [Term] id: UBERON:0014398 name: respiratory muscle is_a: UBERON:0003831 ! respiratory system muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: RO:0002216 GO:0007585 ! capable of part of respiratory gaseous exchange by respiratory system relationship: RO:0002216 GO:0007585 ! capable of part of respiratory gaseous exchange by respiratory system relationship: RO:0002473 UBERON:0001134 ! composed primarily of skeletal muscle tissue property_value: IAO:0000232 "this class may be merged with 'respiratory system muscle'; check intercostals" xsd:string [Term] id: UBERON:0014401 name: renal venous blood vessel is_a: UBERON:0003517 ! kidney blood vessel is_a: UBERON:0003920 ! venous blood vessel intersection_of: UBERON:0003920 ! venous blood vessel intersection_of: BFO:0000050 UBERON:0002113 ! part of kidney [Term] id: UBERON:0014451 name: tongue taste bud is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001727 ! taste bud intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue relationship: BFO:0000050 UBERON:0014389 ! part of gustatory papilla of tongue [Term] id: UBERON:0014452 name: gustatory epithelium of tongue is_a: UBERON:0002926 ! gustatory epithelium is_a: UBERON:0003357 ! epithelium of tongue intersection_of: UBERON:0002926 ! gustatory epithelium intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0014454 name: visceral abdominal adipose tissue is_a: UBERON:0007808 ! adipose tissue of abdominal region intersection_of: UBERON:0001013 ! adipose tissue intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen intersection_of: RO:0001025 UBERON:0001179 ! located in peritoneal cavity intersection_of: RO:0002007 UBERON:0002075 ! bounding layer of viscus relationship: BFO:0000050 UBERON:0002075 ! part of viscus relationship: RO:0001025 UBERON:0001179 ! located in peritoneal cavity relationship: RO:0002007 UBERON:0002075 ! bounding layer of viscus [Term] id: UBERON:0014455 name: subcutaneous abdominal adipose tissue is_a: UBERON:0002190 ! subcutaneous adipose tissue is_a: UBERON:0007808 ! adipose tissue of abdominal region intersection_of: UBERON:0001013 ! adipose tissue intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis [Term] id: UBERON:0014477 name: thoracic skeleton is_a: UBERON:0010912 ! subdivision of skeleton relationship: BFO:0000050 UBERON:0000915 ! part of thoracic segment of trunk relationship: BFO:0000050 UBERON:0002090 ! part of postcranial axial skeleton [Term] id: UBERON:0014703 name: anal membrane ectodermal component is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: BFO:0000050 UBERON:0001353 ! part of anal region intersection_of: RO:0002202 UBERON:0000924 ! develops from ectoderm relationship: BFO:0000050 UBERON:0001353 ! part of anal region [Term] id: UBERON:0014705 name: median lingual swelling epithelium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0006756 ! part of median lingual swelling relationship: BFO:0000050 UBERON:0006756 ! part of median lingual swelling relationship: RO:0002202 UBERON:0013156 ! develops from 1st arch mandibular endoderm [Term] id: UBERON:0014706 name: primitive renal collecting duct system is_a: UBERON:0007501 ! arborizing epithelial duct system is_a: UBERON:0012275 ! meso-epithelium relationship: RO:0002202 UBERON:0000084 ! develops from ureteric bud [Term] id: UBERON:0014716 name: interlobular duct is_a: UBERON:0035050 ! excretory duct intersection_of: UBERON:0000058 ! duct intersection_of: BFO:0000050 UBERON:0002384 ! part of connective tissue intersection_of: RO:0002170 UBERON:0009911 ! connected to lobule relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0002384 ! part of connective tissue relationship: RO:0002170 UBERON:0009911 ! connected to lobule property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014717 name: mucous acinus is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: BFO:0000050 UBERON:0000414 ! part of mucous gland relationship: BFO:0000050 UBERON:0000414 ! part of mucous gland [Term] id: UBERON:0014719 name: intralobular duct is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct intersection_of: BFO:0000050 UBERON:0009911 ! part of lobule relationship: BFO:0000050 UBERON:0009911 ! part of lobule property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0014720 name: interlobar duct is_a: UBERON:0035050 ! excretory duct intersection_of: UBERON:0000058 ! duct intersection_of: BFO:0000050 UBERON:0002384 ! part of connective tissue intersection_of: RO:0002176 UBERON:0009912 ! connects anatomical lobe relationship: BFO:0000050 UBERON:0002384 ! part of connective tissue relationship: RO:0002176 UBERON:0009912 ! connects anatomical lobe [Term] id: UBERON:0014776 name: midbrain neuromere is_a: UBERON:0004731 ! neuromere intersection_of: UBERON:0004731 ! neuromere intersection_of: BFO:0000050 UBERON:0009616 ! part of presumptive midbrain relationship: BFO:0000050 UBERON:0009616 ! part of presumptive midbrain [Term] id: UBERON:0014777 name: spinal neuromere is_a: UBERON:0004731 ! neuromere intersection_of: UBERON:0004731 ! neuromere intersection_of: BFO:0000050 UBERON:0006241 ! part of future spinal cord relationship: BFO:0000050 UBERON:0006241 ! part of future spinal cord [Term] id: UBERON:0014783 name: cloacal muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001630 ! muscle organ intersection_of: BFO:0000050 UBERON:0000162 ! part of cloaca relationship: BFO:0000050 UBERON:0000162 ! part of cloaca [Term] id: UBERON:0014790 name: lingual septum is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum intersection_of: BFO:0000050 UBERON:0001723 ! part of tongue relationship: BFO:0000050 UBERON:0001723 ! part of tongue [Term] id: UBERON:0014792 name: musculature of pelvic complex is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0010709 ! part of pelvic complex relationship: BFO:0000050 UBERON:0010709 ! part of pelvic complex property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0014793 name: musculature of pectoral complex is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: BFO:0000050 UBERON:0010708 ! part of pectoral complex relationship: BFO:0000050 UBERON:0010708 ! part of pectoral complex property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0014794 name: pectoral appendage muscle is_a: UBERON:0010891 ! pectoral complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0004710 ! part of pectoral appendage relationship: BFO:0000050 UBERON:0007269 ! part of pectoral appendage musculature [Term] id: UBERON:0014795 name: pelvic appendage muscle is_a: UBERON:0010890 ! pelvic complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: BFO:0000050 UBERON:0004709 ! part of pelvic appendage relationship: BFO:0000050 UBERON:0007270 ! part of pelvic appendage musculature [Term] id: UBERON:0014892 name: skeletal muscle organ is_a: UBERON:0001630 ! muscle organ relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0018254 ! part of skeletal musculature relationship: RO:0002202 UBERON:0003082 ! develops from myotome relationship: RO:0002219 UBERON:0011899 ! surrounded by epimysium relationship: RO:0002473 UBERON:0001134 ! composed primarily of skeletal muscle tissue [Term] id: UBERON:0014903 name: primordial vasculature is_a: UBERON:0001048 ! primordium intersection_of: UBERON:0001048 ! primordium intersection_of: RO:0002387 UBERON:0002049 ! has potential to develop into vasculature relationship: BFO:0000050 UBERON:0011695 ! part of embryonic cardiovascular system relationship: RO:0002387 UBERON:0002049 ! has potential to develop into vasculature [Term] id: UBERON:0014907 name: intersomitic vessel is_a: UBERON:0001981 ! blood vessel relationship: RO:0002202 UBERON:0005805 ! develops from dorsal aorta [Term] id: UBERON:0015021 name: forelimb endochondral element is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0010363 ! endochondral element intersection_of: BFO:0000050 UBERON:0002102 ! part of forelimb union_of: UBERON:0008962 ! forelimb bone union_of: UBERON:0010883 ! forelimb cartilage element union_of: UBERON:0010884 ! forelimb bone pre-cartilage condensation relationship: BFO:0000050 UBERON:0001440 ! part of forelimb skeleton [Term] id: UBERON:0015022 name: hindlimb endochondral element is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0010363 ! endochondral element intersection_of: BFO:0000050 UBERON:0002103 ! part of hindlimb union_of: UBERON:0003464 ! hindlimb bone union_of: UBERON:0010885 ! hindlimb cartilage element union_of: UBERON:0010886 ! hindlimb pre-cartilage condensation relationship: BFO:0000050 UBERON:0001441 ! part of hindlimb skeleton [Term] id: UBERON:0015061 name: limb endochondral element is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010363 ! endochondral element intersection_of: UBERON:0010363 ! endochondral element intersection_of: BFO:0000050 UBERON:0002101 ! part of limb union_of: UBERON:0002428 ! limb bone union_of: UBERON:0010881 ! limb cartilage element union_of: UBERON:0010882 ! limb bone pre-cartilage condensation relationship: BFO:0000050 UBERON:0004381 ! part of skeleton of limb [Term] id: UBERON:0015128 name: subepicardial layer of epicardium is_a: UBERON:0007188 ! mesothelium of serous pericardium relationship: BFO:0000050 UBERON:0002348 ! part of epicardium property_value: IAO:0000116 "consider merging into myocardial compact layer" xsd:string [Term] id: UBERON:0015129 name: epicardial fat is_a: UBERON:0003837 ! thoracic segment connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0035814 ! pericardial fat intersection_of: UBERON:0001013 ! adipose tissue intersection_of: RO:0002220 UBERON:0002348 ! adjacent to epicardium intersection_of: RO:0002220 UBERON:0002425 ! adjacent to visceral serous pericardium intersection_of: RO:0002221 UBERON:0000948 ! surrounds heart relationship: BFO:0000050 UBERON:0015128 ! part of subepicardial layer of epicardium relationship: RO:0002220 UBERON:0002348 ! adjacent to epicardium relationship: RO:0002220 UBERON:0002425 ! adjacent to visceral serous pericardium [Term] id: UBERON:0015152 name: gland of ocular region is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0004088 ! part of orbital region relationship: BFO:0000050 UBERON:0035639 ! part of ocular adnexa property_value: UBPROP:0000008 "the only orbital gland found in anuran amphibians is either the Harderian or the lacrimal; if it is a lacrimal, then a progressive lateral migration of the lacrimal glands must occur through the amniotes[PMID:7559104]" xsd:string property_value: UBPROP:0000008 "the only orbital gland found in anuran amphibians is the Harderian[PMID:8843648]" xsd:string [Term] id: UBERON:0015154 name: lateral gland of orbital region is_a: UBERON:0015152 ! gland of ocular region property_value: IAO:0000232 "The class name or definition should not be taken to mean strictly in the lateral ocular region. We place the extraocular lacrimal glands, even though they are as the name suggests outside the ocular region. The class exists as the division between lateral vs medial (Harderian, nictitans) glands is standard, e.g. http://www.ncbi.nlm.nih.gov/pubmed/7559104" xsd:string [Term] id: UBERON:0015165 name: multi-unit eye is_a: UBERON:0000970 ! eye intersection_of: UBERON:0000970 ! eye intersection_of: RO:0002473 UBERON:0000020 ! composed primarily of sense organ relationship: RO:0002473 UBERON:0000020 ! composed primarily of sense organ property_value: RO:0002161 NCBITaxon:7742 [Term] id: UBERON:0015178 name: somite border is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: BFO:0000050 UBERON:0002329 ! part of somite intersection_of: RO:0002220 UBERON:0003059 ! adjacent to presomitic mesoderm relationship: BFO:0000050 UBERON:0002329 ! part of somite relationship: RO:0002220 UBERON:0003059 ! adjacent to presomitic mesoderm [Term] id: UBERON:0015179 name: somite boundary epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0015178 ! part of somite border relationship: BFO:0000050 UBERON:0015178 ! part of somite border [Term] id: UBERON:0015203 name: non-connected functional system is_a: UBERON:0034923 ! disconnected anatomical group [Term] id: UBERON:0015204 name: glandular system is_a: UBERON:0015203 ! non-connected functional system intersection_of: UBERON:0015203 ! non-connected functional system intersection_of: RO:0002473 UBERON:0002530 ! composed primarily of gland relationship: RO:0002473 UBERON:0002530 ! composed primarily of gland [Term] id: UBERON:0015212 name: lateral structure is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: BSPO:0000126 UBERON:0000465 ! material anatomical entity relationship: BFO:0000050 UBERON:0000465 ! part of material anatomical entity relationship: BSPO:0000126 UBERON:0000465 ! material anatomical entity relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria property_value: IAO:0000232 "This class is primarily to implement taxon constraints. It may be removed in the future." xsd:string [Term] id: UBERON:0015228 name: circulatory organ is_a: UBERON:0003103 ! compound organ relationship: BFO:0000050 UBERON:0001009 ! part of circulatory system relationship: RO:0000086 PATO:0001690 ! has quality contractile [Term] id: UBERON:0015280 name: pancreas left lobe is_a: UBERON:0007324 ! pancreatic lobule is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0007324 ! pancreatic lobule intersection_of: BSPO:0000120 UBERON:0000017 ! exocrine pancreas relationship: BSPO:0000120 UBERON:0000017 ! exocrine pancreas [Term] id: UBERON:0015281 name: pancreas right lobe is_a: UBERON:0007324 ! pancreatic lobule is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0007324 ! pancreatic lobule intersection_of: BSPO:0000121 UBERON:0000017 ! exocrine pancreas relationship: BSPO:0000121 UBERON:0000017 ! exocrine pancreas [Term] id: UBERON:0015329 name: respiratory system basement membrane is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0003570 ! part of respiratory system connective tissue [Term] id: UBERON:0015410 name: heart plus pericardium is_a: UBERON:0005178 ! thoracic cavity element relationship: BFO:0000050 UBERON:0004535 ! part of cardiovascular system [Term] id: UBERON:0015418 name: urethra mesenchymal layer is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0015420 name: ureteral valve is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: BFO:0000050 UBERON:0000056 ! part of ureter relationship: BFO:0000050 UBERON:0000056 ! part of ureter relationship: RO:0002215 GO:0035809 ! capable of regulation of urine volume [Term] id: UBERON:0015480 name: proper hepatic artery is_a: UBERON:0001193 ! hepatic artery is_a: UBERON:0004573 ! systemic artery relationship: BFO:0000050 UBERON:0005436 ! part of common hepatic artery relationship: RO:0002380 UBERON:0005436 ! branching part of common hepatic artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0015481 name: left hepatic artery is_a: UBERON:0001193 ! hepatic artery is_a: UBERON:0015796 ! liver blood vessel intersection_of: UBERON:0001193 ! hepatic artery intersection_of: BFO:0000050 UBERON:0001115 ! part of left lobe of liver relationship: BFO:0000050 UBERON:0001115 ! part of left lobe of liver relationship: RO:0002170 UBERON:0015480 ! connected to proper hepatic artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0015482 name: right hepatic artery is_a: UBERON:0001193 ! hepatic artery is_a: UBERON:0015796 ! liver blood vessel intersection_of: UBERON:0001193 ! hepatic artery intersection_of: BFO:0000050 UBERON:0001114 ! part of right lobe of liver relationship: BFO:0000050 UBERON:0001114 ! part of right lobe of liver relationship: RO:0002170 UBERON:0015480 ! connected to proper hepatic artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0015485 name: choledocho-duodenal junction is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0002114 ! connects duodenum intersection_of: RO:0002176 UBERON:0002394 ! connects bile duct relationship: RO:0002176 UBERON:0002114 ! connects duodenum relationship: RO:0002176 UBERON:0002394 ! connects bile duct [Term] id: UBERON:0015716 name: anal canal epithelium is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0014703 ! anal membrane ectodermal component intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal relationship: BFO:0000050 UBERON:0000159 ! part of anal canal property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0015783 name: smooth muscle layer in fatty layer of subcutaneous tissue is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0002072 ! part of hypodermis relationship: BFO:0000050 UBERON:0002072 ! part of hypodermis [Term] id: UBERON:0015796 name: liver blood vessel is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0002107 ! part of liver relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:0015808 name: eye epithelium is_a: UBERON:0007625 ! pigment epithelium of eye is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000019 ! part of camera-type eye relationship: BFO:0000050 UBERON:0000019 ! part of camera-type eye [Term] id: UBERON:0015833 name: foregut epithelium is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001041 ! part of foregut relationship: BFO:0000050 UBERON:0001041 ! part of foregut [Term] id: UBERON:0015834 name: duodenum lamina propria is_a: UBERON:0001238 ! lamina propria of small intestine intersection_of: UBERON:0000030 ! lamina propria intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0008342 ! part of intestinal villus of duodenum property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0016405 name: pulmonary capillary is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0003526 ! respiratory system capillary intersection_of: UBERON:0001982 ! capillary intersection_of: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0016478 name: liver stroma is_a: UBERON:0003891 ! stroma is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: BFO:0000050 UBERON:0002107 ! part of liver relationship: BFO:0000050 UBERON:0002107 ! part of liver property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0016490 name: auditory system is_a: UBERON:0007037 ! mechanosensory system intersection_of: UBERON:0001032 ! sensory system intersection_of: RO:0002215 GO:0007605 ! capable of sensory perception of sound relationship: BFO:0000050 UBERON:0002105 ! part of vestibulo-auditory system relationship: RO:0002215 GO:0007605 ! capable of sensory perception of sound [Term] id: UBERON:0016509 name: cavity of right ventricle is_a: UBERON:0035763 ! cavity of cardiac chamber intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0002080 ! luminal space of heart right ventricle relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: RO:0002572 UBERON:0002080 ! luminal space of heart right ventricle [Term] id: UBERON:0016512 name: lumen of duodenum is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: BFO:0000050 UBERON:0002114 ! part of duodenum relationship: BFO:0000050 UBERON:0002114 ! part of duodenum [Term] id: UBERON:0016513 name: cavity of left atrium is_a: UBERON:0035763 ! cavity of cardiac chamber intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0002079 ! luminal space of left cardiac atrium relationship: BFO:0000050 UBERON:0002079 ! part of left cardiac atrium relationship: RO:0002572 UBERON:0002079 ! luminal space of left cardiac atrium [Term] id: UBERON:0016514 name: cavity of left ventricle is_a: UBERON:0035763 ! cavity of cardiac chamber intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0002084 ! luminal space of heart left ventricle relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle relationship: RO:0002572 UBERON:0002084 ! luminal space of heart left ventricle [Term] id: UBERON:0016520 name: epithelium of female urethra is_a: UBERON:0002325 ! epithelium of urethra intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001334 ! part of female urethra relationship: BFO:0000050 UBERON:0001334 ! part of female urethra [Term] id: UBERON:0016522 name: cavity of right atrium is_a: UBERON:0035763 ! cavity of cardiac chamber intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0002078 ! luminal space of right cardiac atrium relationship: BFO:0000050 UBERON:0002078 ! part of right cardiac atrium relationship: RO:0002572 UBERON:0002078 ! luminal space of right cardiac atrium [Term] id: UBERON:0016545 name: pharyngeal ectoderm is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: BFO:0000050 UBERON:0000076 ! part of external ectoderm intersection_of: BFO:0000050 UBERON:0001042 ! part of chordate pharynx relationship: BFO:0000050 UBERON:0000076 ! part of external ectoderm [Term] id: UBERON:0016548 name: central nervous system gray matter layer is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer intersection_of: RO:0002473 UBERON:0002020 ! composed primarily of gray matter relationship: RO:0002473 UBERON:0002020 ! composed primarily of gray matter [Term] id: UBERON:0016552 name: phlegm is_a: UBERON:0000912 ! mucus intersection_of: UBERON:0000912 ! mucus intersection_of: RO:0003001 UBERON:0000065 ! produced by respiratory tract relationship: RO:0003001 UBERON:0000065 ! produced by respiratory tract [Term] id: UBERON:0016553 name: respiratory system mucus is_a: UBERON:0000912 ! mucus intersection_of: UBERON:0000912 ! mucus intersection_of: RO:0003001 UBERON:0004785 ! produced by respiratory system mucosa relationship: RO:0003001 UBERON:0004785 ! produced by respiratory system mucosa [Term] id: UBERON:0016566 name: pit is_a: UBERON:0036215 ! anatomical surface region [Term] id: UBERON:0016570 name: lamina of gray matter of spinal cord is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer intersection_of: BFO:0000050 UBERON:0002315 ! part of gray matter of spinal cord relationship: BFO:0000050 UBERON:0002315 ! part of gray matter of spinal cord [Term] id: UBERON:0016879 name: future central nervous system is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0001017 ! has potential to develop into central nervous system relationship: BFO:0000050 UBERON:0016880 ! part of future nervous system relationship: RO:0002202 UBERON:0000924 ! develops from ectoderm relationship: RO:0002202 UBERON:0002346 {gci_filler="NCBITaxon:7742", gci_relation="BFO:0000050"} ! develops from neurectoderm relationship: RO:0002387 UBERON:0001017 ! has potential to develop into central nervous system [Term] id: UBERON:0016880 name: future nervous system is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: RO:0002387 UBERON:0001016 ! has potential to develop into nervous system relationship: RO:0002387 UBERON:0001016 ! has potential to develop into nervous system relationship: RO:0002496 UBERON:0000111 ! existence starts during or after organogenesis stage [Term] id: UBERON:0016885 name: epithelium of terminal part of digestive tract is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract relationship: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract [Term] id: UBERON:0016886 name: muscle tissue of terminal part of digestive tract is_a: UBERON:0002385 ! muscle tissue intersection_of: UBERON:0002385 ! muscle tissue intersection_of: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract relationship: BFO:0000050 UBERON:0006866 ! part of terminal part of digestive tract [Term] id: UBERON:0016887 name: entire extraembryonic component is_a: UBERON:0000481 ! multi-tissue structure relationship: BFO:0000050 UBERON:0004716 ! part of conceptus relationship: RO:0002220 UBERON:0002050 ! adjacent to embryonic structure relationship: RO:0002491 UBERON:0000068 ! existence starts and ends during embryo stage [Term] id: UBERON:0016888 name: transitional anatomical structure is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0017635 name: paired venous dural sinus is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005486 ! venous dural sinus is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0005486 ! venous dural sinus intersection_of: BSPO:0000126 UBERON:0000033 ! head relationship: BSPO:0000126 UBERON:0000033 ! head [Term] id: UBERON:0017649 name: dorsal body wall is_a: UBERON:0000309 ! body wall intersection_of: UBERON:0000309 ! body wall intersection_of: BFO:0000050 UBERON:0001137 ! part of dorsum relationship: BFO:0000050 UBERON:0001137 ! part of dorsum [Term] id: UBERON:0017650 name: developing mesenchymal structure is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: RO:0002473 UBERON:0003104 ! composed primarily of mesenchyme relationship: RO:0002473 UBERON:0003104 ! composed primarily of mesenchyme [Term] id: UBERON:0017672 name: abdominal viscera is_a: UBERON:0002075 ! viscus is_a: UBERON:0005172 ! abdomen element intersection_of: UBERON:0002075 ! viscus intersection_of: BFO:0000050 UBERON:0000916 ! part of abdomen [Term] id: UBERON:0018111 name: muscle layer of rectum is_a: UBERON:0011198 ! muscle layer of large intestine intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0018112 name: rectum smooth muscle tissue is_a: UBERON:0004220 ! large intestine smooth muscle is_a: UBERON:0004231 ! anal region smooth muscle is_a: UBERON:0016886 ! muscle tissue of terminal part of digestive tract intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001052 ! part of rectum relationship: BFO:0000050 UBERON:0001052 ! part of rectum [Term] id: UBERON:0018115 name: left renal pelvis is_a: UBERON:0001224 ! renal pelvis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: BFO:0000050 UBERON:0001223 ! part of left ureter relationship: BFO:0000050 UBERON:0001223 ! part of left ureter [Term] id: UBERON:0018116 name: right renal pelvis is_a: UBERON:0001224 ! renal pelvis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: BFO:0000050 UBERON:0001222 ! part of right ureter relationship: BFO:0000050 UBERON:0001222 ! part of right ureter [Term] id: UBERON:0018135 name: fibrocollagenous connective tissue is_a: UBERON:0011824 ! fibrous connective tissue intersection_of: UBERON:0011824 ! fibrous connective tissue intersection_of: RO:0000086 PATO:0002462 ! has quality collagenous relationship: RO:0000086 PATO:0002462 ! has quality collagenous [Term] id: UBERON:0018150 name: skin of lower lip is_a: UBERON:0001458 ! skin of lip intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0001835 ! part of lower lip relationship: BFO:0000050 UBERON:0001835 ! part of lower lip [Term] id: UBERON:0018234 name: stroma of pancreas is_a: UBERON:0003891 ! stroma intersection_of: UBERON:0003891 ! stroma intersection_of: BFO:0000050 UBERON:0001264 ! part of pancreas relationship: BFO:0000050 UBERON:0001264 ! part of pancreas property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0018239 name: rhombomere boundary is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0001892 ! connects rhombomere relationship: BFO:0000050 UBERON:0007277 ! part of presumptive hindbrain relationship: RO:0002176 UBERON:0001892 ! connects rhombomere [Term] id: UBERON:0018251 name: meningeal vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0002360 ! drains meninx relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0002360 ! drains meninx property_value: UBPROP:0000008 "In humans, any of several veins that accompany the meningeal arteries, communicate with the sinuses of the dura mater and diploic veins, and drain into the regional veins outside the cranial vault." xsd:string [Term] id: UBERON:0018252 name: internal pudendal vein is_a: UBERON:0009029 ! pudendal vein relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0001317 ! connected to internal iliac vein property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000008 "In humans, they begin in the deep veins of the penis which issue from the corpus cavernosum penis, accompany the internal pudendal artery, and unite to form a single vessel, which ends in the internal iliac vein. They receive the veins from the urethral bulb, and the perineal and inferior hemorrhoidal veins" xsd:string [Term] id: UBERON:0018254 name: skeletal musculature is_a: UBERON:0000061 ! anatomical structure relationship: BFO:0000050 UBERON:0000383 ! part of musculature of body relationship: RO:0002473 UBERON:0014892 ! composed primarily of skeletal muscle organ property_value: IAO:0000116 "Added for consistency with MA EMAPA and EHDAA2. See https://github.com/obophenotype/mouse-anatomy-ontology/issues/104" xsd:string [Term] id: UBERON:0018256 name: lacrimal vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001817 ! drains lacrimal gland relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002170 UBERON:0011192 ! connected to superior ophthalmic vein relationship: RO:0002179 UBERON:0001817 ! drains lacrimal gland property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0018257 name: submucosa of digestive tract is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract [Term] id: UBERON:0018260 name: layer of muscle tissue is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: RO:0002473 UBERON:0002385 ! composed primarily of muscle tissue relationship: RO:0002473 UBERON:0002385 ! composed primarily of muscle tissue [Term] id: UBERON:0018261 name: muscular coat of digestive tract is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: BFO:0000050 UBERON:0001555 ! part of digestive tract relationship: RO:0002216 GO:0030432 ! capable of part of peristalsis property_value: UBPROP:0000009 "responsible for gut movement, such as peristalsis" xsd:string [Term] id: UBERON:0018321 name: foramen for glossopharyngeal nerve is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: RO:0002570 UBERON:0001649 ! conduit for glossopharyngeal nerve relationship: BFO:0000050 UBERON:0003128 ! part of cranium relationship: RO:0002570 UBERON:0001649 ! conduit for glossopharyngeal nerve [Term] id: UBERON:0018543 name: lumen of intestine is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0000160 ! luminal space of intestine relationship: BFO:0000050 UBERON:0000160 ! part of intestine relationship: RO:0002572 UBERON:0000160 ! luminal space of intestine property_value: IAO:0000116 "see notes in inclusivity in class 'intestine'" xsd:string [Term] id: UBERON:0018544 name: trigeminal nerve muscle is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: RO:0002005 UBERON:0001645 ! innervated_by trigeminal nerve relationship: RO:0002005 UBERON:0001645 ! innervated_by trigeminal nerve relationship: RO:0002202 UBERON:0004362 ! develops from pharyngeal arch 1 [Term] id: UBERON:0018649 name: cardiac muscle tissue of ventricle is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: BFO:0000050 UBERON:0002082 ! part of cardiac ventricle relationship: BFO:0000050 UBERON:0001083 ! part of myocardium of ventricle [Term] id: UBERON:0018674 name: heart vasculature is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 UBERON:0000948 ! part of heart [Term] id: UBERON:0018707 name: bladder organ is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0009856 ! sac relationship: RO:0000086 PATO:0002468 ! has quality distensible relationship: RO:0001015 UBERON:0000463 ! location of organism substance [Term] id: UBERON:0019042 name: reproductive system mucosa is_a: UBERON:0000344 ! mucosa is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0000990 ! part of reproductive system [Term] id: UBERON:0019143 name: intramuscular adipose tissue is_a: UBERON:0001013 ! adipose tissue intersection_of: UBERON:0001013 ! adipose tissue intersection_of: BFO:0000050 UBERON:0014892 ! part of skeletal muscle organ relationship: BFO:0000050 UBERON:0014892 ! part of skeletal muscle organ [Term] id: UBERON:0019189 name: carotid artery endothelium is_a: UBERON:0001917 ! endothelium of artery intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0005396 ! part of carotid artery segment relationship: BFO:0000050 UBERON:0005396 ! part of carotid artery segment [Term] id: UBERON:0019190 name: mucous gland of lung is_a: UBERON:0000414 ! mucous gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0000414 ! mucous gland intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung [Term] id: UBERON:0019204 name: skin epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000014 ! part of zone of skin relationship: BFO:0000050 UBERON:0000014 ! part of zone of skin [Term] id: UBERON:0019206 name: tongue papilla epithelium is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0003357 ! epithelium of tongue intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0001726 ! part of papilla of tongue relationship: BFO:0000050 UBERON:0001726 ! part of papilla of tongue [Term] id: UBERON:0019207 name: chorioretinal region is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: BFO:0000050 NCBITaxon:6072 ! part of Eumetazoa relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye relationship: BFO:0000051 UBERON:0000966 ! has part retina relationship: BFO:0000051 UBERON:0001776 ! has part optic choroid [Term] id: UBERON:0019263 name: gray matter of hindbrain is_a: UBERON:0003528 ! brain gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019267 name: gray matter of midbrain is_a: UBERON:0003528 ! brain gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: BFO:0000050 UBERON:0001891 ! part of midbrain relationship: BFO:0000050 UBERON:0001891 ! part of midbrain property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0019304 name: sensory organ epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000020 ! part of sense organ relationship: BFO:0000050 UBERON:0000020 ! part of sense organ [Term] id: UBERON:0019319 name: exocrine gland of integumental system is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003297 ! gland of integumental system intersection_of: UBERON:0002365 ! exocrine gland intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0020358 name: accessory XI nerve nucleus comment: See also: Wikipedia:Spinal_accessory_nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:0022284 name: lacrimal gland bud is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0015808 ! eye epithelium relationship: BFO:0000050 UBERON:0001750 ! part of lacrimal apparatus property_value: UBPROP:0000008 "in mouse, the primary bud arises around E13.5 and extends caudally into the surrounding neural-crest derived periocular mesenchyme; between E15.5 and E16.5 the bud undergoes branching morphogenesis, forming both a major extra-orbital lobe and a minor intraorbital lobe" xsd:string [Term] id: UBERON:0022288 name: surface of eyeball is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: RO:0002007 UBERON:0010230 ! bounding layer of eyeball of camera-type eye relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye relationship: RO:0002007 UBERON:0010230 ! bounding layer of eyeball of camera-type eye [Term] id: UBERON:0022292 name: splenic arteriole is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001980 ! arteriole intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:0022293 name: reproductive gland secretion is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0003001 UBERON:0003937 ! produced by reproductive gland relationship: RO:0003001 UBERON:0003937 ! produced by reproductive gland [Term] id: UBERON:0022303 name: nervous system cell part layer is_a: UBERON:0005162 ! multi cell part structure intersection_of: UBERON:0005162 ! multi cell part structure intersection_of: BFO:0000050 UBERON:0001016 ! part of nervous system intersection_of: RO:0000086 PATO:0002124 ! has quality laminar relationship: BFO:0000050 UBERON:0001016 ! part of nervous system relationship: RO:0000086 PATO:0002124 ! has quality laminar property_value: IAO:0000116 "this is currently used to group some cellular layers that may not strictly conform to the CARO definition of cell-part layer. Consider genericisizing and introducing subtypes for cellular layer, fibrous layer and cell soma layer" xsd:string [Term] id: UBERON:0022350 name: visceral serous membrane is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: BFO:0000050 UBERON:0000042 ! part of serous membrane intersection_of: RO:0002220 UBERON:0000062 ! adjacent to organ relationship: BFO:0000050 UBERON:0000042 ! part of serous membrane relationship: RO:0002220 UBERON:0000062 ! adjacent to organ [Term] id: UBERON:0022351 name: parietal serous membrane is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: BFO:0000050 UBERON:0000042 ! part of serous membrane intersection_of: RO:0002220 UBERON:0002553 ! adjacent to anatomical cavity relationship: BFO:0000050 UBERON:0000042 ! part of serous membrane relationship: RO:0002220 UBERON:0002553 ! adjacent to anatomical cavity [Term] id: UBERON:0022361 name: lung field is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007688 ! anlage intersection_of: UBERON:0007688 ! anlage intersection_of: RO:0002387 UBERON:0002048 ! has potential to develop into lung relationship: BFO:0000050 UBERON:0003258 ! part of endoderm of foregut relationship: RO:0002387 UBERON:0002048 ! has potential to develop into lung [Term] id: UBERON:0034705 name: developing neuroepithelium is_a: UBERON:0000483 ! epithelium relationship: BFO:0000050 UBERON:0001016 ! part of nervous system [Term] id: UBERON:0034706 name: proliferating neuroepithelium is_a: UBERON:0034705 ! developing neuroepithelium [Term] id: UBERON:0034707 name: differentiating neuroepithelium is_a: UBERON:0034705 ! developing neuroepithelium [Term] id: UBERON:0034709 name: hindbrain marginal layer is_a: UBERON:0004062 ! neural tube marginal layer is_a: UBERON:0011215 ! central nervous system cell part cluster intersection_of: UBERON:0004062 ! neural tube marginal layer intersection_of: BFO:0000050 UBERON:0002028 ! part of hindbrain relationship: BFO:0000050 UBERON:0002028 ! part of hindbrain [Term] id: UBERON:0034710 name: spinal cord ventricular layer is_a: UBERON:0004060 ! neural tube ventricular layer intersection_of: UBERON:0004060 ! neural tube ventricular layer intersection_of: BFO:0000050 UBERON:0006241 ! part of future spinal cord relationship: BFO:0000050 UBERON:0005496 ! part of neural tube lateral wall relationship: BFO:0000050 UBERON:0006241 ! part of future spinal cord [Term] id: UBERON:0034713 name: cranial neuron projection bundle is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0015212 ! lateral structure relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0000033 ! part of head relationship: BSPO:0000126 UBERON:0000033 ! head relationship: extends_fibers_into UBERON:0000955 ! brain relationship: RO:0002160 NCBITaxon:89593 ! only in taxon Craniata [Term] id: UBERON:0034717 name: integumental taste bud is_a: UBERON:0001727 ! taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: BFO:0000050 UBERON:0002416 ! part of integumental system relationship: BFO:0000050 UBERON:0002416 ! part of integumental system [Term] id: UBERON:0034719 name: lip taste bud is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001727 ! taste bud intersection_of: BFO:0000050 UBERON:0001833 ! part of lip relationship: BFO:0000050 UBERON:0001833 ! part of lip property_value: RO:0002175 NCBITaxon:32443 [Term] id: UBERON:0034720 name: head taste bud is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: BFO:0000050 UBERON:0001084 ! part of skin of head relationship: BFO:0000050 UBERON:0001084 ! part of skin of head [Term] id: UBERON:0034721 name: pharyngeal taste bud is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001727 ! taste bud intersection_of: BFO:0000050 UBERON:0006562 ! part of pharynx relationship: BFO:0000050 UBERON:0000355 ! part of pharyngeal mucosa property_value: RO:0002175 NCBITaxon:7778 [Term] id: UBERON:0034724 name: esophageal taste bud is_a: UBERON:0001727 ! taste bud is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001727 ! taste bud intersection_of: BFO:0000050 UBERON:0001043 ! part of esophagus relationship: BFO:0000050 UBERON:0001043 ! part of esophagus property_value: RO:0002175 NCBITaxon:32443 [Term] id: UBERON:0034726 name: trunk taste bud is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: BFO:0000050 UBERON:0001085 ! part of skin of trunk relationship: BFO:0000050 UBERON:0001085 ! part of skin of trunk [Term] id: UBERON:0034728 name: autonomic nerve is_a: UBERON:0011779 ! nerve of head region relationship: BFO:0000050 UBERON:0002410 ! part of autonomic nervous system relationship: BFO:0000050 UBERON:0036264 ! part of zygomaticotemporal nerve relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: RO:0002380 UBERON:0036264 ! branching part of zygomaticotemporal nerve [Term] id: UBERON:0034729 name: sympathetic nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: BFO:0000050 UBERON:0000013 ! part of sympathetic nervous system relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0000013 ! part of sympathetic nervous system relationship: extends_fibers_into UBERON:0001806 ! sympathetic ganglion property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0034873 name: bodily gas is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: RO:0000086 PATO:0001547 ! has quality quality of a gas relationship: RO:0000086 PATO:0001547 ! has quality quality of a gas [Term] id: UBERON:0034874 name: air in respiratory system is_a: UBERON:0034947 ! gas in respiratory system intersection_of: UBERON:0034873 ! bodily gas intersection_of: RO:0001025 UBERON:0001004 ! located in respiratory system intersection_of: RO:0002473 CHEBI:25805 ! composed primarily of oxygen atom relationship: RO:0002473 CHEBI:25805 ! composed primarily of oxygen atom [Term] id: UBERON:0034878 name: prechordal mesoderm is_a: UBERON:0002050 ! embryonic structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: BFO:0000050 UBERON:0003068 ! part of axial mesoderm intersection_of: RO:0002387 UBERON:0003063 ! has potential to develop into prechordal plate relationship: BFO:0000050 UBERON:0003068 ! part of axial mesoderm relationship: RO:0002387 UBERON:0003063 ! has potential to develop into prechordal plate [Term] id: UBERON:0034903 name: left atrium endocardium is_a: UBERON:0002166 ! endocardium of atrium intersection_of: UBERON:0002165 ! endocardium intersection_of: BFO:0000050 UBERON:0002079 ! part of left cardiac atrium relationship: BFO:0000050 UBERON:0002079 ! part of left cardiac atrium [Term] id: UBERON:0034905 name: gland lumen is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0002530 ! luminal space of gland relationship: BFO:0000050 UBERON:0002530 ! part of gland relationship: RO:0002572 UBERON:0002530 ! luminal space of gland [Term] id: UBERON:0034921 name: multi organ part structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: RO:0002473 UBERON:0000064 ! composed primarily of organ part property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0034922 name: cell cluster is_a: UBERON:0010000 ! multicellular anatomical structure relationship: RO:0002219 UBERON:0000015 ! surrounded by non-material anatomical boundary property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0034923 name: disconnected anatomical group is_a: UBERON:0000465 ! material anatomical entity relationship: RO:0000086 PATO:0010001 ! has quality disconnected relationship: RO:0002180 UBERON:0000061 {minCardinality="2"} ! has component anatomical structure relationship: RO:0002473 UBERON:0000061 ! composed primarily of anatomical structure property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0034925 name: anatomical collection is_a: UBERON:0000465 ! material anatomical entity relationship: RO:0002351 UBERON:0000061 ! has member anatomical structure property_value: IAO:0000116 "resolve if this should be a subclass of disconnected anatomical group. Some collections (e.g. the skeleton or skull) are arguably connected" xsd:string property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0034929 name: external soft tissue zone is_a: UBERON:0010000 ! multicellular anatomical structure relationship: BFO:0000050 UBERON:0000475 ! part of organism subdivision relationship: BFO:0000051 UBERON:0000014 ! has part zone of skin relationship: BFO:0000051 UBERON:0001015 ! has part musculature relationship: BFO:0000051 UBERON:0001021 ! has part nerve relationship: BFO:0000051 UBERON:0002049 ! has part vasculature [Term] id: UBERON:0034932 name: epithelium of biliary system is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0002294 ! part of biliary system relationship: BFO:0000050 UBERON:0002294 ! part of biliary system [Term] id: UBERON:0034933 name: layer of smooth muscle tissue is_a: UBERON:0018260 ! layer of muscle tissue intersection_of: UBERON:0004923 ! organ component layer intersection_of: RO:0002473 UBERON:0001135 ! composed primarily of smooth muscle tissue relationship: RO:0002473 UBERON:0001135 ! composed primarily of smooth muscle tissue [Term] id: UBERON:0034940 name: venous sinus cavity is_a: UBERON:0010161 ! lumen of blood vessel intersection_of: UBERON:0000464 ! anatomical space intersection_of: RO:0002572 UBERON:0006615 ! luminal space of venous sinus relationship: BFO:0000050 UBERON:0006615 ! part of venous sinus relationship: RO:0002572 UBERON:0006615 ! luminal space of venous sinus [Term] id: UBERON:0034944 name: zone of organ is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0034945 name: excreted gas is_a: UBERON:0000174 ! excreta is_a: UBERON:0034873 ! bodily gas intersection_of: UBERON:0034873 ! bodily gas intersection_of: RO:0002353 GO:0007588 ! output of excretion [Term] id: UBERON:0034946 name: gas excreted from digestive tract comment: In mammals, mostly produced as a byproduct of bacterial fermentation in the gastrointestinal (GI) tract, especially the colon, and excreted through the rectum is_a: UBERON:0034945 ! excreted gas intersection_of: UBERON:0034945 ! excreted gas intersection_of: RO:0003001 UBERON:0001555 ! produced by digestive tract relationship: RO:0003001 UBERON:0001555 ! produced by digestive tract [Term] id: UBERON:0034947 name: gas in respiratory system is_a: UBERON:0034873 ! bodily gas intersection_of: UBERON:0034873 ! bodily gas intersection_of: RO:0001025 UBERON:0001004 ! located in respiratory system relationship: RO:0001025 UBERON:0001004 ! located in respiratory system [Term] id: UBERON:0034969 name: epithelial layer of duct is_a: UBERON:0003914 ! epithelial tube intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0000058 ! part of duct relationship: BFO:0000050 UBERON:0000058 ! part of duct [Term] id: UBERON:0034995 name: jaw mesenchyme is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0011595 ! part of jaw region relationship: BFO:0000050 UBERON:0011595 ! part of jaw region [Term] id: UBERON:0035037 name: jaw epithelium is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: BFO:0000050 UBERON:0011595 ! part of jaw region relationship: BFO:0000050 UBERON:0011595 ! part of jaw region [Term] id: UBERON:0035039 name: rectal artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001052 ! supplies rectum relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0001052 ! supplies rectum [Term] id: UBERON:0035050 name: excretory duct is_a: UBERON:0000058 ! duct [Term] id: UBERON:0035118 name: material entity in digestive tract is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0001025 UBERON:0006909 ! located in lumen of digestive tract relationship: RO:0001025 UBERON:0006909 ! located in lumen of digestive tract property_value: IAO:0000116 "Note that we treat any material entity that is ingested as an anatomical structure by defintion, although this may be expanding the CARO usage somewhat" xsd:string [Term] id: UBERON:0035159 name: entire surface of organism is_a: UBERON:0006984 ! anatomical surface intersection_of: UBERON:0006984 ! anatomical surface intersection_of: RO:0002221 UBERON:0000468 ! surrounds multicellular organism relationship: RO:0002221 UBERON:0000468 ! surrounds multicellular organism [Term] id: UBERON:0035237 name: branch of internal carotid artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005396 ! carotid artery segment intersection_of: UBERON:0005396 ! carotid artery segment intersection_of: RO:0002380 UBERON:0001532 ! branching part of internal carotid artery relationship: BFO:0000050 UBERON:0001532 ! part of internal carotid artery relationship: RO:0002380 UBERON:0001532 ! branching part of internal carotid artery [Term] id: UBERON:0035398 name: branch of external carotid artery is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002380 UBERON:0001070 ! branching part of external carotid artery relationship: BFO:0000050 UBERON:0001070 ! part of external carotid artery relationship: RO:0002380 UBERON:0001070 ! branching part of external carotid artery [Term] id: UBERON:0035471 name: posterior surface of kidney is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: BSPO:0000122 UBERON:0002113 ! kidney intersection_of: RO:0002007 UBERON:0002113 ! bounding layer of kidney relationship: BFO:0000050 UBERON:0002113 ! part of kidney relationship: BSPO:0000122 UBERON:0002113 ! kidney relationship: RO:0002007 UBERON:0002113 ! bounding layer of kidney [Term] id: UBERON:0035539 name: esophageal artery is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001043 ! supplies esophagus relationship: BFO:0000050 UBERON:0001515 ! part of thoracic aorta relationship: RO:0002170 UBERON:0002345 ! connected to descending thoracic aorta relationship: RO:0002178 UBERON:0001043 ! supplies esophagus relationship: RO:0002380 UBERON:0001515 ! branching part of thoracic aorta property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035546 name: uveal vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001768 ! drains uvea relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0001768 ! drains uvea [Term] id: UBERON:0035548 name: colic artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001155 ! supplies colon relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0001155 ! supplies colon [Term] id: UBERON:0035549 name: vasculature of integument is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: RO:0001025 UBERON:0002199 ! located in integument relationship: RO:0001025 UBERON:0002199 ! located in integument relationship: RO:0002216 GO:0001659 ! capable of part of temperature homeostasis property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035550 name: superficial vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: BFO:0000050 UBERON:0035549 ! part of vasculature of integument relationship: BFO:0000050 UBERON:0035549 ! part of vasculature of integument [Term] id: UBERON:0035551 name: deep vasculature is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: BSPO:0000107 UBERON:0002199 ! integument relationship: BSPO:0000107 UBERON:0002199 ! integument [Term] id: UBERON:0035552 name: deep vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: BFO:0000050 UBERON:0035551 ! part of deep vasculature relationship: BFO:0000050 UBERON:0035551 ! part of deep vasculature [Term] id: UBERON:0035553 name: left cardiac chamber is_a: UBERON:0004151 ! cardiac chamber is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0004151 ! cardiac chamber intersection_of: BSPO:0000120 UBERON:0000948 ! heart relationship: BSPO:0000120 UBERON:0000948 ! heart [Term] id: UBERON:0035554 name: right cardiac chamber is_a: UBERON:0004151 ! cardiac chamber is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0004151 ! cardiac chamber intersection_of: BSPO:0000121 UBERON:0000948 ! heart relationship: BSPO:0000121 UBERON:0000948 ! heart [Term] id: UBERON:0035597 name: profundal placode is_a: UBERON:0009955 ! neurogenic placode relationship: BFO:0000050 UBERON:0003070 ! part of trigeminal placode complex [Term] id: UBERON:0035639 name: ocular adnexa is_a: UBERON:0034921 ! multi organ part structure relationship: BFO:0000050 UBERON:0004088 ! part of orbital region [Term] id: UBERON:0035642 name: laryngeal nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: RO:0002134 UBERON:0001737 ! innervates larynx relationship: RO:0002134 UBERON:0001737 ! innervates larynx [Term] id: UBERON:0035763 name: cavity of cardiac chamber is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0004151 ! luminal space of cardiac chamber relationship: BFO:0000050 UBERON:0004151 ! part of cardiac chamber relationship: RO:0002219 UBERON:0002165 ! surrounded by endocardium relationship: RO:0002572 UBERON:0004151 ! luminal space of cardiac chamber [Term] id: UBERON:0035767 name: intrapulmonary bronchus is_a: UBERON:0002185 ! bronchus intersection_of: UBERON:0002185 ! bronchus intersection_of: BFO:0000050 UBERON:0002048 ! part of lung relationship: BFO:0000050 UBERON:0002048 ! part of lung property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0035804 name: future mouth is_a: UBERON:0013522 ! subdivision of tube relationship: BFO:0000050 UBERON:0007026 ! part of presumptive gut relationship: BFO:0000051 UBERON:0000925 ! has part endoderm relationship: BFO:0000051 UBERON:0000930 ! has part stomodeum [Term] id: UBERON:0035805 name: muscle layer of sigmoid colon is_a: UBERON:0012489 ! muscle layer of colon intersection_of: UBERON:0006660 ! muscular coat intersection_of: BFO:0000050 UBERON:0001159 ! part of sigmoid colon relationship: BFO:0000050 UBERON:0001159 ! part of sigmoid colon [Term] id: UBERON:0035809 name: serous cavity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: RO:0002572 UBERON:0005906 ! luminal space of serous sac relationship: BFO:0000050 UBERON:0005906 ! part of serous sac relationship: RO:0002572 UBERON:0005906 ! luminal space of serous sac [Term] id: UBERON:0035814 name: pericardial fat is_a: UBERON:0035818 ! visceral fat intersection_of: UBERON:0001013 ! adipose tissue intersection_of: RO:0002221 UBERON:0000948 ! surrounds heart relationship: RO:0002221 UBERON:0000948 ! surrounds heart [Term] id: UBERON:0035815 name: paracardial fat is_a: UBERON:0035814 ! pericardial fat intersection_of: UBERON:0001013 ! adipose tissue intersection_of: RO:0002220 UBERON:0002408 ! adjacent to parietal serous pericardium intersection_of: RO:0002221 UBERON:0000948 ! surrounds heart relationship: RO:0002220 UBERON:0002408 ! adjacent to parietal serous pericardium [Term] id: UBERON:0035818 name: visceral fat is_a: UBERON:0001013 ! adipose tissue intersection_of: UBERON:0001013 ! adipose tissue intersection_of: RO:0002221 UBERON:0000062 ! surrounds organ relationship: RO:0002221 UBERON:0000062 ! surrounds organ [Term] id: UBERON:0035819 name: abdominopelvic cavity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: BFO:0000050 UBERON:0002323 ! part of coelemic cavity lumen intersection_of: RO:0002572 UBERON:0002417 ! luminal space of abdominal segment of trunk relationship: BFO:0000050 UBERON:0002323 ! part of coelemic cavity lumen relationship: BFO:0000050 UBERON:0002417 ! part of abdominal segment of trunk relationship: RO:0002572 UBERON:0002417 ! luminal space of abdominal segment of trunk [Term] id: UBERON:0035820 name: peritoneal sac is_a: UBERON:0002075 ! viscus is_a: UBERON:0005906 ! serous sac relationship: BFO:0000051 UBERON:0001179 ! has part peritoneal cavity relationship: BFO:0000051 UBERON:0002358 ! has part peritoneum relationship: RO:0001025 UBERON:0003684 ! located in abdominal cavity [Term] id: UBERON:0035965 name: wall of blood vessel is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001981 ! part of blood vessel relationship: BFO:0000050 UBERON:0001981 ! part of blood vessel relationship: RO:0002473 UBERON:0004797 ! composed primarily of blood vessel layer [Term] id: UBERON:0036072 name: respiratory primordium epithelium is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009854 ! digestive tract diverticulum is_a: UBERON:0015833 ! foregut epithelium intersection_of: UBERON:0007499 ! epithelial sac intersection_of: BFO:0000050 UBERON:0008947 ! part of respiratory primordium relationship: BFO:0000050 UBERON:0008947 ! part of respiratory primordium relationship: RO:0002202 UBERON:0007690 ! develops from early pharyngeal endoderm [Term] id: UBERON:0036073 name: respiratory primordium mesenchyme is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: BFO:0000050 UBERON:0008947 ! part of respiratory primordium relationship: BFO:0000050 UBERON:0008947 ! part of respiratory primordium relationship: RO:0002202 UBERON:0004873 ! develops from splanchnopleure [Term] id: UBERON:0036146 name: cardiopharyngeal field is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage [Term] id: UBERON:0036186 name: fibroelastic connective tissue is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0011824 ! fibrous connective tissue intersection_of: UBERON:0011824 ! fibrous connective tissue intersection_of: RO:0002473 GO:0071953 ! composed primarily of elastic fiber [Term] id: UBERON:0036214 name: rectosigmoid junction is_a: UBERON:8410024 ! intestinal junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0001052 ! connects rectum intersection_of: RO:0002176 UBERON:0001159 ! connects sigmoid colon relationship: RO:0002176 UBERON:0001052 ! connects rectum relationship: RO:0002176 UBERON:0001159 ! connects sigmoid colon [Term] id: UBERON:0036215 name: anatomical surface region is_a: UBERON:0000465 ! material anatomical entity relationship: BFO:0000050 UBERON:0000061 ! part of anatomical structure relationship: RO:0002007 UBERON:0000061 ! bounding layer of anatomical structure property_value: RO:0002175 NCBITaxon:33090 property_value: RO:0002175 NCBITaxon:33208 property_value: RO:0002175 NCBITaxon:4751 [Term] id: UBERON:0036217 name: coelomic fluid is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0006314 ! bodily fluid intersection_of: RO:0001025 UBERON:0011997 ! located in coelom relationship: RO:0001025 UBERON:0011997 ! located in coelom property_value: UBPROP:0000009 "he coelomic fluid serves several functions; it acts as a hydroskeleton, it allows free movement and growth of internal organs, it serves for transport of gases, nutrients and waste products between different parts of the body, it allows storage of sperm and eggs during maturation and it acts as a reservoir for waste [Wikipedia:Coelom#Coelomic_fluid]" xsd:string [Term] id: UBERON:0036225 name: respiratory system gland is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system relationship: BFO:0000050 UBERON:0001004 ! part of respiratory system [Term] id: UBERON:0036242 name: post-embryonic notochord is_a: UBERON:0002328 ! notochord intersection_of: UBERON:0002328 ! notochord intersection_of: BFO:0000050 UBERON:0009953 ! part of post-embryonic organism relationship: BFO:0000050 UBERON:0009953 ! part of post-embryonic organism property_value: RO:0002161 NCBITaxon:32524 property_value: RO:0002175 NCBITaxon:118072 property_value: RO:0002175 NCBITaxon:7737 property_value: RO:0002175 NCBITaxon:7746 property_value: RO:0002175 NCBITaxon:7878 property_value: RO:0002175 NCBITaxon:8292 [Term] id: UBERON:0036244 name: secretion of serous membrane is_a: UBERON:0007779 ! transudate intersection_of: UBERON:0007779 ! transudate intersection_of: filtered_through UBERON:0000042 ! serous membrane relationship: filtered_through UBERON:0000042 ! serous membrane relationship: RO:0001025 UBERON:0005906 ! located in serous sac [Term] id: UBERON:0036253 name: orifice of skull is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: BFO:0000050 UBERON:0003129 ! part of skull relationship: BFO:0000050 UBERON:0003129 ! part of skull [Term] id: UBERON:0036264 name: zygomaticotemporal nerve is_a: UBERON:0011779 ! nerve of head region relationship: BFO:0000050 UBERON:0000377 ! part of maxillary nerve relationship: RO:0002380 UBERON:0000377 ! branching part of maxillary nerve [Term] id: UBERON:0036268 name: pelvic vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0002355 ! drains pelvic region of trunk relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0002355 ! drains pelvic region of trunk [Term] id: UBERON:0036285 name: wall of left ventricle is_a: UBERON:0004784 ! heart ventricle wall intersection_of: UBERON:0004784 ! heart ventricle wall intersection_of: BFO:0000050 UBERON:0002084 ! part of heart left ventricle relationship: BFO:0000050 UBERON:0002084 ! part of heart left ventricle [Term] id: UBERON:0036286 name: wall of right ventricle is_a: UBERON:0004784 ! heart ventricle wall intersection_of: UBERON:0004784 ! heart ventricle wall intersection_of: BFO:0000050 UBERON:0002080 ! part of heart right ventricle relationship: BFO:0000050 UBERON:0002080 ! part of heart right ventricle [Term] id: UBERON:0036288 name: anterior wall of left ventricle is_a: UBERON:0036285 ! wall of left ventricle intersection_of: UBERON:0004784 ! heart ventricle wall intersection_of: BSPO:0000123 UBERON:0002084 ! heart left ventricle relationship: BFO:0000050 UBERON:0036285 ! part of wall of left ventricle relationship: BSPO:0000123 UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0036289 name: anterior wall of right ventricle is_a: UBERON:0036286 ! wall of right ventricle intersection_of: UBERON:0004784 ! heart ventricle wall intersection_of: BSPO:0000123 UBERON:0002080 ! heart right ventricle relationship: BSPO:0000123 UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0036290 name: myocardium of anterior wall of left ventricle is_a: UBERON:0006566 ! left ventricle myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: BFO:0000050 UBERON:0036288 ! part of anterior wall of left ventricle relationship: BFO:0000050 UBERON:0036288 ! part of anterior wall of left ventricle [Term] id: UBERON:0036291 name: myocardium of anterior wall of right ventricle is_a: UBERON:0006567 ! right ventricle myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: BFO:0000050 UBERON:0036289 ! part of anterior wall of right ventricle relationship: BFO:0000050 UBERON:0036289 ! part of anterior wall of right ventricle [Term] id: UBERON:0036294 name: mucosa of lip is_a: UBERON:0003729 ! mouth mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: BFO:0000050 UBERON:0001833 ! part of lip relationship: BFO:0000050 UBERON:0001833 ! part of lip [Term] id: UBERON:0036295 name: renal pelvis/ureter is_a: UBERON:0000477 ! anatomical cluster relationship: BFO:0000050 UBERON:0011143 ! part of upper urinary tract [Term] id: UBERON:0036301 name: vasculature of spleen is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:0036302 name: vasculature of central nervous system plus retina is_a: UBERON:0002049 ! vasculature union_of: UBERON:0004864 ! vasculature of retina union_of: UBERON:0036303 ! vasculature of central nervous system [Term] id: UBERON:0036303 name: vasculature of central nervous system is_a: UBERON:0036302 ! vasculature of central nervous system plus retina intersection_of: UBERON:0002049 ! vasculature intersection_of: BFO:0000050 UBERON:0001017 ! part of central nervous system relationship: BFO:0000050 UBERON:0001017 ! part of central nervous system [Term] id: UBERON:0036343 name: wall of gallbladder is_a: UBERON:0003697 ! abdominal wall is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0002110 ! part of gallbladder relationship: BFO:0000050 UBERON:0002110 ! part of gallbladder [Term] id: UBERON:0036351 name: wall of brachiocephalic artery is_a: UBERON:0000415 ! artery wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001529 ! part of brachiocephalic artery relationship: BFO:0000050 UBERON:0001529 ! part of brachiocephalic artery [Term] id: UBERON:0036352 name: wall of subclavian artery is_a: UBERON:0000415 ! artery wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001533 ! part of subclavian artery relationship: BFO:0000050 UBERON:0001533 ! part of subclavian artery [Term] id: UBERON:0036362 name: wall of anal canal is_a: UBERON:0001169 ! wall of large intestine is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000159 ! part of anal canal intersection_of: BFO:0000050 UBERON:0001007 ! part of digestive system relationship: BFO:0000050 UBERON:0000159 ! part of anal canal [Term] id: UBERON:0036375 name: wall of right ureter is_a: UBERON:0009916 ! wall of ureter intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001222 ! part of right ureter relationship: BFO:0000050 UBERON:0001222 ! part of right ureter [Term] id: UBERON:0036376 name: wall of left ureter is_a: UBERON:0009916 ! wall of ureter intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001223 ! part of left ureter relationship: BFO:0000050 UBERON:0001223 ! part of left ureter property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0036422 name: wall of pulmonary artery is_a: UBERON:0000415 ! artery wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0002012 ! part of pulmonary artery relationship: BFO:0000050 UBERON:0002012 ! part of pulmonary artery property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:0036521 name: wall of urethra is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000057 ! part of urethra relationship: BFO:0000050 UBERON:0000057 ! part of urethra [Term] id: UBERON:0036553 name: wall of synovial tendon sheath is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000304 ! part of tendon sheath relationship: BFO:0000050 UBERON:0000304 ! part of tendon sheath [Term] id: UBERON:0036925 name: wall of eyeball is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye relationship: BFO:0000050 UBERON:0010230 ! part of eyeball of camera-type eye [Term] id: UBERON:0037094 name: wall of common carotid artery is_a: UBERON:0000415 ! artery wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001530 ! part of common carotid artery plus branches relationship: BFO:0000050 UBERON:0001530 ! part of common carotid artery plus branches [Term] id: UBERON:0037144 name: wall of heart is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0000948 ! part of heart relationship: BFO:0000050 RO:0002577 ! part of system relationship: BFO:0000050 UBERON:0000948 ! part of heart relationship: RO:0002371 UBERON:0002406 ! attached to pericardial sac relationship: RO:0002371 UBERON:0004292 ! attached to cardiac skeleton [Term] id: UBERON:0037455 name: wall of female urethra is_a: UBERON:0036521 ! wall of urethra intersection_of: UBERON:0000060 ! anatomical wall intersection_of: BFO:0000050 UBERON:0001334 ! part of female urethra relationship: BFO:0000050 UBERON:0001334 ! part of female urethra [Term] id: UBERON:0039222 name: cystic artery is_a: UBERON:0001637 ! artery is_a: UBERON:0015796 ! liver blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001152 ! supplies cystic duct relationship: BFO:0000050 UBERON:0015482 ! part of right hepatic artery relationship: RO:0002178 UBERON:0001152 ! supplies cystic duct [Term] id: UBERON:0039228 name: sigmoid vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0001159 ! drains sigmoid colon relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0001159 ! drains sigmoid colon relationship: RO:0002376 UBERON:0001215 ! tributary of inferior mesenteric vein [Term] id: UBERON:0039261 name: pancreatic artery is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0001264 ! supplies pancreas relationship: BFO:0000050 UBERON:0001194 ! part of splenic artery relationship: RO:0002178 UBERON:0001264 ! supplies pancreas relationship: RO:0002380 UBERON:0001194 ! branching part of splenic artery [Term] id: UBERON:0039355 name: urethral artery is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: RO:0002178 UBERON:0000057 ! supplies urethra relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002178 UBERON:0000057 ! supplies urethra [Term] id: UBERON:0039377 name: urethral vein is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: RO:0002179 UBERON:0000057 ! drains urethra relationship: BFO:0000050 RO:0002577 ! part of system relationship: RO:0002179 UBERON:0000057 ! drains urethra relationship: RO:0002376 UBERON:0018252 ! tributary of internal pudendal vein [Term] id: UBERON:0039856 name: right ovarian vein is_a: UBERON:0001145 ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein intersection_of: RO:0002179 UBERON:0002118 ! drains right ovary relationship: RO:0002179 UBERON:0002118 ! drains right ovary relationship: RO:0002376 UBERON:0001072 ! tributary of posterior vena cava [Term] id: UBERON:0039857 name: left ovarian vein is_a: UBERON:0001145 ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein intersection_of: RO:0002179 UBERON:0002119 ! drains left ovary relationship: RO:0002179 UBERON:0002119 ! drains left ovary [Term] id: UBERON:1000021 name: skin of face is_a: UBERON:0001084 ! skin of head intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0001456 ! part of face relationship: BFO:0000050 UBERON:0001456 ! part of face [Term] id: UBERON:1000024 name: parenchyma of spleen is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: BFO:0000050 UBERON:0002106 ! part of spleen relationship: BFO:0000050 UBERON:0002106 ! part of spleen [Term] id: UBERON:1100000 name: digestive tract junction is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: RO:0002176 UBERON:0004921 ! connects subdivision of digestive tract relationship: RO:0002176 UBERON:0004921 ! connects subdivision of digestive tract [Term] id: UBERON:2001053 name: future internal carotid artery is_a: UBERON:0004573 ! systemic artery relationship: BFO:0000050 UBERON:0001530 ! part of common carotid artery plus branches relationship: RO:0002202 UBERON:0004363 ! develops from pharyngeal arch artery [Term] id: UBERON:2001457 name: postcranial axial cartilage is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element intersection_of: BFO:0000050 UBERON:0002090 ! part of postcranial axial skeleton relationship: BFO:0000050 UBERON:0002090 ! part of postcranial axial skeleton [Term] id: UBERON:2007013 name: preplacodal ectoderm is_a: UBERON:0005497 ! non-neural ectoderm [Term] id: UBERON:3000961 name: external integument structure comment: Not clear how this differs from parent class. See https://github.com/obophenotype/uberon/issues/1305 is_a: UBERON:0003102 ! surface structure intersection_of: UBERON:0003102 ! surface structure intersection_of: BFO:0000050 UBERON:0002199 ! part of integument relationship: BFO:0000050 UBERON:0002199 ! part of integument [Term] id: UBERON:3000972 name: head external integument structure is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: BFO:0000050 UBERON:0000033 ! part of head relationship: BFO:0000050 UBERON:0000033 ! part of head [Term] id: UBERON:3000977 name: body external integument structure is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: BFO:0000050 UBERON:0002100 ! part of trunk relationship: BFO:0000050 UBERON:0002100 ! part of trunk [Term] id: UBERON:3000981 name: limb external integument structure is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: BFO:0000050 UBERON:0002101 ! part of limb relationship: BFO:0000050 UBERON:0002101 ! part of limb [Term] id: UBERON:3010200 name: vasculature of respiratory integument is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: BFO:0000050 UBERON:0001004 ! part of respiratory system intersection_of: BFO:0000050 UBERON:0002199 ! part of integument relationship: BFO:0000050 UBERON:0002199 ! part of integument property_value: IAO:0000116 "Modified from the original AAO source" xsd:string [Term] id: UBERON:4200230 name: surface of bone is_a: UBERON:0006984 ! anatomical surface intersection_of: UBERON:0006984 ! anatomical surface intersection_of: BFO:0000050 UBERON:0001474 ! part of bone element relationship: BFO:0000050 UBERON:0001474 ! part of bone element [Term] id: UBERON:4300226 name: forelimb bud mesenchyme is_a: UBERON:0003413 ! pectoral appendage bud mesenchyme is_a: UBERON:0010328 ! limb bud mesenchyme intersection_of: UBERON:0010328 ! limb bud mesenchyme intersection_of: BFO:0000050 UBERON:0005417 ! part of forelimb bud relationship: BFO:0000050 UBERON:0005417 ! part of forelimb bud [Term] id: UBERON:4300227 name: hindlimb bud mesenchyme is_a: UBERON:0003412 ! pelvic appendage bud mesenchyme is_a: UBERON:0010328 ! limb bud mesenchyme intersection_of: UBERON:0010328 ! limb bud mesenchyme intersection_of: BFO:0000050 UBERON:0005418 ! part of hindlimb bud relationship: BFO:0000050 UBERON:0005418 ! part of hindlimb bud [Term] id: UBERON:6000004 name: panarthropod head is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head intersection_of: BFO:0000050 NCBITaxon:88770 ! part of Panarthropoda relationship: BFO:0000050 NCBITaxon:88770 ! part of Panarthropoda [Term] id: UBERON:6001730 name: insect larval head is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head intersection_of: BFO:0000050 UBERON:0002548 ! part of larva intersection_of: RO:0002160 NCBITaxon:50557 ! only in taxon Insecta relationship: BFO:0000050 UBERON:0002548 ! part of larva relationship: RO:0002160 NCBITaxon:50557 ! only in taxon Insecta [Term] id: UBERON:6002639 name: insect larval sense organ is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: BFO:0000050 UBERON:0002548 ! part of larva intersection_of: RO:0002160 NCBITaxon:50557 ! only in taxon Insecta relationship: BFO:0000050 UBERON:0002548 ! part of larva relationship: RO:0002160 NCBITaxon:50557 ! only in taxon Insecta [Term] id: UBERON:6007240 name: insect embryonic/larval sensillum is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6002639 ! insect larval sense organ intersection_of: UBERON:0002536 ! arthropod sensillum intersection_of: BFO:0000050 UBERON:0002548 ! part of larva [Term] id: UBERON:6007242 name: insect embryonic/larval head sensillum is_a: UBERON:0000963 ! head sensillum is_a: UBERON:6007240 ! insect embryonic/larval sensillum is_a: UBERON:6007280 ! insect embryonic/larval head sense organ intersection_of: UBERON:0002536 ! arthropod sensillum intersection_of: BFO:0000050 UBERON:6001730 ! part of insect larval head [Term] id: UBERON:6007280 name: insect embryonic/larval head sense organ is_a: UBERON:6002639 ! insect larval sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: BFO:0000050 UBERON:6001730 ! part of insect larval head relationship: BFO:0000050 UBERON:6001730 ! part of insect larval head [Term] id: UBERON:8000006 name: left side of back is_a: UBERON:0001137 ! dorsum is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001137 ! dorsum intersection_of: BSPO:0000120 UBERON:0000468 ! multicellular organism relationship: BSPO:0000120 UBERON:0000468 ! multicellular organism [Term] id: UBERON:8000007 name: right side of back is_a: UBERON:0001137 ! dorsum is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001137 ! dorsum intersection_of: BSPO:0000121 UBERON:0000468 ! multicellular organism relationship: BSPO:0000121 UBERON:0000468 ! multicellular organism [Term] id: UBERON:8300001 name: right forelimb is_a: UBERON:0002102 ! forelimb is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0002102 ! forelimb intersection_of: BSPO:0000121 UBERON:0010708 ! pectoral complex relationship: BSPO:0000121 UBERON:0010708 ! pectoral complex property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:8300002 name: left forelimb is_a: UBERON:0002102 ! forelimb is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0002102 ! forelimb intersection_of: BSPO:0000120 UBERON:0010708 ! pectoral complex relationship: BSPO:0000120 UBERON:0010708 ! pectoral complex property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:8300003 name: right hindlimb is_a: UBERON:0002103 ! hindlimb is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0002103 ! hindlimb intersection_of: BSPO:0000121 UBERON:0010709 ! pelvic complex relationship: BSPO:0000121 UBERON:0010709 ! pelvic complex property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:8300004 name: left hindlimb is_a: UBERON:0002103 ! hindlimb is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0002103 ! hindlimb intersection_of: BSPO:0000120 UBERON:0010709 ! pelvic complex relationship: BSPO:0000120 UBERON:0010709 ! pelvic complex property_value: UBPROP:0000006 "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] id: UBERON:8400021 name: liver serosa is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane intersection_of: BFO:0000050 UBERON:0002107 ! part of liver relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:8400023 name: liver subserosa is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0012375 ! subserosa intersection_of: UBERON:0012375 ! subserosa intersection_of: BFO:0000050 UBERON:0002107 ! part of liver relationship: BFO:0000050 UBERON:0002107 ! part of liver [Term] id: UBERON:8410001 name: small intestine venule is_a: UBERON:0001979 ! venule intersection_of: UBERON:0001979 ! venule intersection_of: BFO:0000050 UBERON:0001213 ! part of intestinal villus relationship: BFO:0000050 UBERON:0001213 ! part of intestinal villus [Term] id: UBERON:8410004 name: small intestine arteriole is_a: UBERON:0001980 ! arteriole intersection_of: UBERON:0001980 ! arteriole intersection_of: BFO:0000050 UBERON:0001213 ! part of intestinal villus relationship: BFO:0000050 UBERON:0001213 ! part of intestinal villus [Term] id: UBERON:8410008 name: venule of anorectum is_a: UBERON:0001979 ! venule intersection_of: UBERON:0001979 ! venule intersection_of: BFO:0000050 UBERON:8410050 ! part of anorectum relationship: BFO:0000050 UBERON:8410050 ! part of anorectum [Term] id: UBERON:8410009 name: arteriole of anorectum is_a: UBERON:0001980 ! arteriole intersection_of: UBERON:0001980 ! arteriole intersection_of: BFO:0000050 UBERON:8410050 ! part of anorectum relationship: BFO:0000050 UBERON:8410050 ! part of anorectum [Term] id: UBERON:8410015 name: arteriole of colon is_a: UBERON:0001980 ! arteriole intersection_of: UBERON:0001980 ! arteriole intersection_of: BFO:0000050 UBERON:0001155 ! part of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:8410024 name: intestinal junction is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: BFO:0000050 UBERON:0000160 ! part of intestine intersection_of: RO:0002176 UBERON:0004921 ! connects subdivision of digestive tract relationship: BFO:0000050 UBERON:0000160 ! part of intestine [Term] id: UBERON:8410043 name: bronchus submucosal gland is_a: UBERON:8410077 ! airway submucosal gland intersection_of: UBERON:0011148 ! submucosal gland intersection_of: BFO:0000050 UBERON:0002185 ! part of bronchus relationship: BFO:0000050 UBERON:0002185 ! part of bronchus property_value: RO:0002175 NCBITaxon:9606 [Term] id: UBERON:8410048 name: venule of colon is_a: UBERON:0001979 ! venule intersection_of: UBERON:0001979 ! venule intersection_of: BFO:0000050 UBERON:0001155 ! part of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:8410050 name: anorectum is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: BFO:0000051 UBERON:0000159 ! has part anal canal intersection_of: BFO:0000051 UBERON:0001052 ! has part rectum intersection_of: BFO:0000051 UBERON:0001245 ! has part anus relationship: BFO:0000050 UBERON:0000059 ! part of large intestine relationship: BFO:0000051 UBERON:0000159 ! has part anal canal relationship: BFO:0000051 UBERON:0001052 ! has part rectum relationship: BFO:0000051 UBERON:0001245 ! has part anus property_value: IAO:0000116 "The anatomy, pathology and medical community considers the anus to be part of the large intestine, and supports the use of 'anorectum' to include rectum, anal canal and anus. Although a few resources seem to only include the distal part of the rectum in 'anorectum', this UBERON grouping term is meant to refer more broadly to the whole of rectum." xsd:string property_value: RO:0002175 NCBITaxon:9606 property_value: UBPROP:0000007 "anorectal" xsd:string [Term] id: UBERON:8410056 name: capillary of anorectum is_a: UBERON:0001982 ! capillary intersection_of: UBERON:0001982 ! capillary intersection_of: BFO:0000050 UBERON:8410050 ! part of anorectum relationship: BFO:0000050 UBERON:8410050 ! part of anorectum [Term] id: UBERON:8410057 name: capillary of colon is_a: UBERON:0001982 ! capillary intersection_of: UBERON:0001982 ! capillary intersection_of: BFO:0000050 UBERON:0001155 ! part of colon relationship: BFO:0000050 UBERON:0001155 ! part of colon [Term] id: UBERON:8410068 name: capillary of small intestine is_a: UBERON:0001982 ! capillary intersection_of: UBERON:0001982 ! capillary intersection_of: BFO:0000050 UBERON:0002108 ! part of small intestine relationship: BFO:0000050 UBERON:0002108 ! part of small intestine [Term] id: UBERON:8410077 name: airway submucosal gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011148 ! submucosal gland is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0011148 ! submucosal gland intersection_of: BFO:0000050 UBERON:0000065 ! part of respiratory tract relationship: BFO:0000050 UBERON:0000065 ! part of respiratory tract [Term] id: UBERON:8410081 name: blood microvessel is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0010523 ! microcirculatory vessel property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2186" xsd:string property_value: UBPROP:0000007 "microvascular" xsd:string [Term] id: UBERON:8440015 name: noradrenergic cell groups is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:8450002 name: excretory system is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: RO:0002215 GO:0046903 ! capable of secretion relationship: RO:0002215 GO:0046903 ! capable of secretion [Term] id: UBERON:8480000 name: iliac vein smooth muscle tissue is_a: UBERON:0004696 ! venous system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0005610 ! part of iliac vein relationship: BFO:0000050 UBERON:0005610 ! part of iliac vein [Term] id: UBERON:8480001 name: capillary of brain is_a: UBERON:0001982 ! capillary is_a: UBERON:0003499 ! brain blood vessel intersection_of: UBERON:0001982 ! capillary intersection_of: BFO:0000050 UBERON:0000955 ! part of brain [Term] id: UBERON:8480002 name: thoracic aorta smooth muscle tissue is_a: UBERON:0004178 ! aorta smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: BFO:0000050 UBERON:0001515 ! part of thoracic aorta relationship: BFO:0000050 UBERON:0001515 ! part of thoracic aorta [Term] id: UBERON:8480004 name: iliac vein endothelium is_a: UBERON:0001919 ! endothelium of vein intersection_of: UBERON:0001986 ! endothelium intersection_of: BFO:0000050 UBERON:0005610 ! part of iliac vein relationship: BFO:0000050 UBERON:0005610 ! part of iliac vein [Term] id: UBERON:8480025 name: skin of clavicle region is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region relationship: BFO:0000050 UBERON:0001421 ! part of pectoral girdle region [Term] id: UBERON:8480026 name: skin of iliac crest region is_a: UBERON:0001415 ! skin of pelvis is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0007830 ! part of pelvic girdle bone/zone relationship: BFO:0000050 UBERON:0007830 ! part of pelvic girdle bone/zone [Term] id: UBERON:8480029 name: skin of external genitalia is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin intersection_of: BFO:0000050 UBERON:0004176 ! part of external genitalia relationship: BFO:0000050 UBERON:0004176 ! part of external genitalia [Term] id: UBERON:8600004 name: visceral muscle tissue is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:8600006 name: visceral striated muscle tissue is_a: UBERON:0002036 ! striated muscle tissue is_a: UBERON:8600004 ! visceral muscle tissue [Typedef] id: BFO:0000050 name: part of name: part_of def: "a core relation that holds between a part and its whole" [] property_value: IAO:0000111 "is part of" xsd:string property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 property_value: RO:0040042 BFO:0000002 property_value: RO:0040042 BFO:0000003 property_value: RO:0040042 BFO:0000004 property_value: RO:0040042 BFO:0000017 property_value: RO:0040042 BFO:0000019 property_value: RO:0040042 BFO:0000020 property_value: RO:0040042 BFO:0000031 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of" xsd:string is_transitive: true is_a: RO:0002131 ! overlaps inverse_of: BFO:0000051 ! has part [Typedef] id: BFO:0000051 name: has part name: has_part def: "a core relation that holds between a whole and its part" [] property_value: IAO:0000111 "has part" xsd:string property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string property_value: IAO:0000118 "has_part" xsd:string property_value: RO:0001900 RO:0001901 is_transitive: true is_a: RO:0002131 ! overlaps [Typedef] id: BFO:0000062 name: preceded by def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] property_value: IAO:0000111 "preceded by" xsd:string property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string property_value: IAO:0000118 "is preceded by" xsd:string property_value: IAO:0000118 "preceded_by" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent holds_over_chain: BFO:0000050 BFO:0000062 is_transitive: true is_a: RO:0002086 ! ends after inverse_of: BFO:0000063 ! precedes [Typedef] id: BFO:0000063 name: precedes def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] property_value: IAO:0000111 "precedes" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent holds_over_chain: BFO:0000050 BFO:0000063 is_transitive: true is_a: RO:0002222 ! temporally related to [Typedef] id: BFO:0000066 name: occurs in def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant property_value: IAO:0000111 "occurs in" xsd:string property_value: IAO:0000118 "occurs_in" xsd:string property_value: IAO:0000118 "unfolds in" xsd:string property_value: IAO:0000118 "unfolds_in" xsd:string property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl domain: BFO:0000003 ! occurrent domain: BFO:0000015 ! process range: BFO:0000004 ! independent continuant holds_over_chain: BFO:0000050 BFO:0000066 inverse_of: BFO:0000067 ! contains process transitive_over: BFO:0000050 ! part of [Typedef] id: BFO:0000067 name: contains process def: "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant property_value: IAO:0000111 "site of" xsd:string property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl [Typedef] id: RO:0000052 name: characteristic of def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." [] comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. property_value: IAO:0000111 "inheres in" xsd:string property_value: IAO:0000112 "this fragility is a characteristic of this vase" xsd:string property_value: IAO:0000112 "this red color is a characteristic of this apple" xsd:string property_value: IAO:0000118 "inheres_in" xsd:string property_value: RO:0001900 RO:0001901 is_functional: true is_a: RO:0002314 ! characteristic of part of inverse_of: RO:0000053 ! has characteristic [Typedef] id: RO:0000053 name: has characteristic def: "Inverse of characteristic_of" [] property_value: IAO:0000111 "bearer of" xsd:string property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string property_value: IAO:0000118 "bearer_of" xsd:string property_value: IAO:0000118 "is bearer of" xsd:string property_value: RO:0001900 RO:0001901 property_value: seeAlso "https://github.com/oborel/obo-relations/pull/284" xsd:string range: BFO:0000020 ! specifically dependent continuant range: PATO:0000001 ! characteristic is_inverse_functional: true [Typedef] id: RO:0000056 name: participates in def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" [] property_value: IAO:0000111 "participates in" xsd:string property_value: IAO:0000112 "this blood clot participates in this blood coagulation" xsd:string property_value: IAO:0000112 "this input material (or this output material) participates in this process" xsd:string property_value: IAO:0000112 "this investigator participates in this investigation" xsd:string property_value: IAO:0000118 "participates_in" xsd:string domain: BFO:0000002 ! continuant range: BFO:0000003 ! occurrent inverse_of: RO:0000057 ! has participant [Typedef] id: RO:0000057 name: has participant def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] property_value: IAO:0000111 "has participant" xsd:string property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string property_value: IAO:0000118 "has_participant" xsd:string domain: BFO:0000003 ! occurrent domain: BFO:0000015 ! process range: BFO:0000002 ! continuant holds_over_chain: BFO:0000051 RO:0000057 [Typedef] id: RO:0000079 name: function of def: "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence" [] comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this catalysis function is a function of this enzyme" xsd:string property_value: IAO:0000116 "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists." xsd:string property_value: IAO:0000118 "function_of" xsd:string property_value: IAO:0000118 "is function of" xsd:string domain: BFO:0000034 ! function is_a: RO:0000052 ! characteristic of inverse_of: RO:0000085 ! has function [Typedef] id: RO:0000080 name: quality of def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string property_value: IAO:0000118 "is quality of" xsd:string property_value: IAO:0000118 "quality_of" xsd:string is_a: RO:0000052 ! characteristic of inverse_of: RO:0000086 ! has quality [Typedef] id: RO:0000081 name: role of def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" [] comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this investigator role is a role of this person" xsd:string property_value: IAO:0000116 "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string property_value: IAO:0000118 "is role of" xsd:string property_value: IAO:0000118 "role_of" xsd:string is_a: RO:0000052 ! characteristic of inverse_of: RO:0000087 ! has role [Typedef] id: RO:0000085 name: has function def: "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence" [] property_value: IAO:0000112 "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)" xsd:string property_value: IAO:0000116 "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists." xsd:string property_value: IAO:0000118 "has_function" xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000034 ! function is_a: RO:0000053 ! has characteristic [Typedef] id: RO:0000086 name: has quality def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" [] property_value: IAO:0000112 "this apple has quality this red color" xsd:string property_value: IAO:0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string property_value: IAO:0000118 "has_quality" xsd:string range: BFO:0000019 ! quality is_a: RO:0000053 ! has characteristic [Typedef] id: RO:0000087 name: has role def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" [] property_value: IAO:0000112 "this person has role this investigator role (more colloquially: this person has this role of investigator)" xsd:string property_value: IAO:0000116 "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." xsd:string property_value: IAO:0000118 "has_role" xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000023 ! role is_a: RO:0000053 ! has characteristic [Typedef] id: RO:0000091 name: has disposition def: "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence" [] domain: BFO:0000004 ! independent continuant range: BFO:0000016 ! disposition is_a: RO:0000053 ! has characteristic inverse_of: RO:0000092 ! disposition of [Typedef] id: RO:0000092 name: disposition of def: "inverse of has disposition" [] comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. is_a: RO:0000052 ! characteristic of [Typedef] id: RO:0001015 name: location of def: "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" [] property_value: IAO:0000111 "is location of" xsd:string property_value: IAO:0000112 "my head is the location of my brain" xsd:string property_value: IAO:0000112 "this cage is the location of this rat" xsd:string property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000118 "location_of" xsd:string property_value: RO:0001900 RO:0001901 is_transitive: true inverse_of: RO:0001025 ! located in [Typedef] id: RO:0001018 name: contained in property_value: IAO:0000111 "contained in" xsd:string property_value: IAO:0000116 "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." xsd:string property_value: IAO:0000116 "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" xsd:string property_value: IAO:0000116 "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " xsd:string property_value: IAO:0000118 "contained_in" xsd:string property_value: RO:0001900 RO:0001901 domain: BFO:0000040 ! material entity range: BFO:0000004 ! independent continuant holds_over_chain: RO:0001025 BFO:0000050 inverse_of: RO:0001019 ! contains [Typedef] id: RO:0001019 name: contains property_value: IAO:0000111 "contains" xsd:string property_value: RO:0001900 RO:0001901 [Typedef] id: RO:0001025 name: located in def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" [] property_value: IAO:0000111 "located in" xsd:string property_value: IAO:0000112 "my brain is located in my head" xsd:string property_value: IAO:0000112 "this rat is located in this cage" xsd:string property_value: IAO:0000116 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" xsd:string property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000118 "located_in" xsd:string property_value: RO:0001900 RO:0001901 domain: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant range: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant is_transitive: true transitive_over: BFO:0000050 ! part of [Typedef] id: RO:0002000 name: 2D boundary of def: "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity" [] property_value: IAO:0000112 "the surface of my skin is a 2D boundary of my body" xsd:string property_value: IAO:0000116 "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." xsd:string property_value: IAO:0000116 "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." xsd:string property_value: IAO:0000118 "2D_boundary_of" xsd:string property_value: IAO:0000118 "boundary of" xsd:string property_value: IAO:0000118 "is 2D boundary of" xsd:string property_value: IAO:0000118 "is boundary of" xsd:string property_value: IAO:0000118 "surface of" xsd:string property_value: RO:0001900 RO:0001901 is_a: RO:0002323 ! mereotopologically related to inverse_of: RO:0002002 ! has 2D boundary [Typedef] id: RO:0002002 name: has 2D boundary def: "a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity" [] property_value: IAO:0000112 "my body has 2D boundary the surface of my skin" xsd:string property_value: IAO:0000116 "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." xsd:string property_value: IAO:0000116 "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 property_value: IAO:0000118 "has boundary" xsd:string property_value: IAO:0000118 "has_2D_boundary" xsd:string property_value: RO:0001900 RO:0001901 domain: BFO:0000040 ! material entity range: BFO:0000141 ! immaterial entity is_a: RO:0002323 ! mereotopologically related to [Typedef] id: RO:0002005 name: innervated_by property_value: http://purl.org/spar/cito/citesAsAuthority "http://www.ncbi.nlm.nih.gov/pubmed/22402613" xsd:anyURI property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 inverse_of: RO:0002134 ! innervates [Typedef] id: RO:0002007 name: bounding layer of def: "X outer_layer_of Y iff:\n. X :continuant that bearer_of some PATO:laminar\n. X part_of Y\n. exists Z :surface\n. X has_boundary Z\n. Z boundary_of Y\n\nhas_boundary: http://purl.obolibrary.org/obo/RO_0002002\nboundary_of: http://purl.obolibrary.org/obo/RO_0002000" [] comment: A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane. property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 range: BFO:0000040 ! material entity is_a: BFO:0000050 ! part of [Typedef] id: RO:0002013 name: has regulatory component activity def: "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." [] is_a: RO:0002017 ! has component activity is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002014 name: has negative regulatory component activity def: "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." [] comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. is_a: RO:0002013 ! has regulatory component activity is_a: RO:0002335 ! negatively regulated by [Typedef] id: RO:0002015 name: has positive regulatory component activity def: "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." [] comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. is_a: RO:0002013 ! has regulatory component activity is_a: RO:0002336 ! positively regulated by [Typedef] id: RO:0002017 name: has component activity comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. is_a: RO:0002018 ! has component process [Typedef] id: RO:0002018 name: has component process def: "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] domain: BFO:0000015 ! process range: BFO:0000015 ! process is_a: RO:0002180 ! has component [Typedef] id: RO:0002022 name: directly regulated by is_a: RO:0002334 ! regulated by inverse_of: RO:0002578 ! directly regulates [Typedef] id: RO:0002023 name: directly negatively regulated by is_a: RO:0002022 ! directly regulated by inverse_of: RO:0002630 ! directly negatively regulates [Typedef] id: RO:0002024 name: directly positively regulated by is_a: RO:0002022 ! directly regulated by inverse_of: RO:0002629 ! directly positively regulates [Typedef] id: RO:0002025 name: has effector activity comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations. is_functional: true is_a: RO:0002017 ! has component activity [Typedef] id: RO:0002081 name: before or simultaneous with comment: Primitive instance level timing relation between events property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string property_value: IAO:0000118 "<=" xsd:string is_a: RO:0002222 ! temporally related to [Typedef] id: RO:0002082 name: simultaneous with comment: t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2) property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 is_transitive: true is_a: RO:0002081 ! before or simultaneous with [Typedef] id: RO:0002086 name: ends after comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string is_transitive: true is_a: RO:0002222 ! temporally related to [Typedef] id: RO:0002087 name: immediately preceded by comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string property_value: IAO:0000118 "starts_at_end_of" xsd:string holds_over_chain: RO:0002224 RO:0002230 is_a: BFO:0000062 ! preceded by inverse_of: RO:0002090 ! immediately precedes [Typedef] id: RO:0002090 name: immediately precedes comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 property_value: IAO:0000118 "ends_at_start_of" xsd:string property_value: IAO:0000118 "meets" xsd:string property_value: RO:0002575 BFO:0000063 holds_over_chain: RO:0002230 RO:0002224 is_a: BFO:0000063 ! precedes [Typedef] id: RO:0002131 name: overlaps def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] property_value: IAO:0000114 IAO:0000125 property_value: RO:0001900 RO:0001901 holds_over_chain: BFO:0000050 BFO:0000050 holds_over_chain: BFO:0000051 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} holds_over_chain: BFO:0000051 RO:0002131 is_symmetric: true is_a: RO:0002323 ! mereotopologically related to transitive_over: BFO:0000050 ! part of expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" [] [Typedef] id: RO:0002134 name: innervates def: "Relation between a 'neuron projection bundle' and a region in which one or more of its component neuron projections either synapses to targets or receives synaptic input.\nT innervates some R\nExpands_to: T has_fasciculating_neuron_projection that synapse_in some R." [] property_value: http://purl.org/spar/cito/citesAsAuthority http://www.ncbi.nlm.nih.gov/pubmed/22402613 property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 property_value: RO:0001900 RO:0001901 transitive_over: BFO:0000050 ! part of expand_expression_to: "RO_0002132 some (GO_0043005 that (RO_0002131 some (GO_0045202 that BFO_0000050 some Y?)))" [] [Typedef] id: RO:0002150 name: continuous with def: "X continuous_with Y if and only if X and Y share a fiat boundary." [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 property_value: IAO:0000118 "connected to" xsd:string property_value: IAO:0000232 "The label for this relation was previously connected to. I relabeled this to \"continuous with\". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)" xsd:string property_value: RO:0001900 RO:0001901 property_value: seeAlso "FMA:85972" xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant is_symmetric: true is_a: RO:0002323 ! mereotopologically related to [Typedef] id: RO:0002160 name: only in taxon def: "x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z." [] property_value: IAO:0000112 "lactation SubClassOf 'only in taxon' some 'Mammalia'" xsd:string property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000116 "The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g.\n\n 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/17921072 property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20973947 property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_a: RO:0002162 ! in taxon [Typedef] id: RO:0002162 name: in taxon def: "x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed." [] comment: Connects a biological entity to its taxon of origin. property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0001-9227-417X property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/17921072 property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20973947 property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints holds_over_chain: BFO:0000050 RO:0002162 holds_over_chain: BFO:0000051 RO:0002162 holds_over_chain: RO:0002202 RO:0002162 holds_over_chain: RO:0002215 RO:0002162 holds_over_chain: RO:0002225 RO:0002162 holds_over_chain: RO:0002254 RO:0002162 is_a: RO:0002320 ! evolutionarily related to [Typedef] id: RO:0002163 name: spatially disjoint from def: "A is spatially_disjoint_from B if and only if they have no parts in common" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000116 "There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. " xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 property_value: IAO:0000232 "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy" xsd:string property_value: RO:0001900 RO:0001901 property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" xsd:anyURI is_a: RO:0002323 ! mereotopologically related to expand_expression_to: "BFO_0000051 exactly 0 (BFO_0000050 some ?Y)" [] [Typedef] id: RO:0002170 name: connected to def: "a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b" [] property_value: IAO:0000112 "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)." xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" xsd:anyURI is_a: RO:0002323 ! mereotopologically related to [Typedef] id: RO:0002176 name: connects def: "c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system." [] property_value: IAO:0000112 "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)." xsd:string property_value: IAO:0000112 "The M8 connects Glasgow and Edinburgh" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" xsd:anyURI domain: BFO:0000004 ! independent continuant is_a: RO:0002323 ! mereotopologically related to [Typedef] id: RO:0002177 name: attached to part of def: "a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b." [] property_value: IAO:0000589 "attached to part of (anatomical structure to anatomical structure)" xsd:string holds_over_chain: RO:0002371 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} is_a: RO:0002323 ! mereotopologically related to is_a: RO:0002567 ! biomechanically related to [Typedef] id: RO:0002178 name: supplies def: "Relation between an arterial structure and another structure, where the arterial structure acts as a conduit channeling fluid, substance or energy." [] property_value: IAO:0000116 "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between an artery and an anatomical structure" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 is_a: RO:0002170 ! connected to [Typedef] id: RO:0002179 name: drains def: "Relation between an collecting structure and another structure, where the collecting structure acts as a conduit channeling fluid, substance or energy away from the other structure." [] property_value: IAO:0000116 "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between a vein and an anatomical structure" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 is_a: RO:0002170 ! connected to [Typedef] id: RO:0002180 name: has component def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string property_value: RO:0001900 RO:0001901 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency is_a: BFO:0000051 ! has part [Typedef] id: RO:0002202 name: develops from def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] comment: This is the transitive form of the develops from relation property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0001-9114-8737 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 property_value: IAO:0000117 https://orcid.org/0000-0003-1980-3228 domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant is_transitive: true is_a: RO:0002258 ! developmentally preceded by inverse_of: RO:0002203 ! develops into [Typedef] id: RO:0002203 name: develops into def: "inverse of develops from" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 property_value: IAO:0000117 https://orcid.org/0000-0003-1980-3228 is_transitive: true is_a: RO:0002286 ! developmentally succeeded by is_a: RO:0002387 ! has potential to develop into is_a: RO:0002388 ! has potential to directly develop into [Typedef] id: RO:0002207 name: directly develops from def: "Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y." [] comment: TODO - add child relations from DOS property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 property_value: IAO:0000119 "FBbt" xsd:string property_value: RO:0002575 RO:0002202 is_a: RO:0002202 ! develops from inverse_of: RO:0002210 ! directly develops into [Typedef] id: RO:0002210 name: directly develops into def: "inverse of directly develops from" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000118 "developmental precursor of" xsd:string is_a: RO:0002203 ! develops into [Typedef] id: RO:0002211 name: regulates def: "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q." [] property_value: IAO:0000117 https://orcid.org/0000-0001-7476-6306 property_value: IAO:0000117 https://orcid.org/0000-0002-3837-8864 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "GO" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string property_value: IAO:0000589 "regulates (processual)" xsd:string property_value: IAO:0000600 "false" xsd:boolean domain: BFO:0000015 ! process range: BFO:0000015 ! process holds_over_chain: RO:0002230 RO:0002211 holds_over_chain: RO:0002578 RO:0002578 is_transitive: true is_a: RO:0002411 ! causally upstream of inverse_of: RO:0002334 ! regulated by transitive_over: RO:0002025 ! has effector activity [Typedef] id: RO:0002212 name: negatively regulates def: "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string property_value: RO:0004050 RO:0002211 holds_over_chain: RO:0002230 RO:0002212 is_a: RO:0002211 ! regulates is_a: RO:0002305 ! causally upstream of, negative effect inverse_of: RO:0002335 ! negatively regulated by [Typedef] id: RO:0002213 name: positively regulates def: "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "positively regulates (process to process)" xsd:string property_value: RO:0004049 RO:0002211 holds_over_chain: RO:0002212 RO:0002212 holds_over_chain: RO:0002230 RO:0002213 is_transitive: true is_a: RO:0002211 ! regulates is_a: RO:0002304 ! causally upstream of, positive effect inverse_of: RO:0002336 ! positively regulated by [Typedef] id: RO:0002215 name: capable of def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] property_value: IAO:0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string property_value: IAO:0000112 "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "has function realized in" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131 property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450 property_value: IAO:0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000015 ! process is_a: RO:0002216 ! capable of part of [Typedef] id: RO:0002216 name: capable of part of def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "has function in" xsd:string property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ holds_over_chain: RO:0002215 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} is_a: RO:0002328 ! functionally related to is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002219 name: surrounded by def: "x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: RO:0001900 RO:0001901 is_a: RO:0002220 ! adjacent to inverse_of: RO:0002221 ! surrounds [Typedef] id: RO:0002220 name: adjacent to def: "x adjacent to y if and only if x and y share a boundary." [] property_value: IAO:0000112 "A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts." xsd:string {http://www.w3.org/2000/01/rdf-schema#seeAlso="issuecomment-218584934"} property_value: IAO:0000112 "The epidermis layer of a vertebrate is adjacent to the dermis." xsd:string property_value: IAO:0000112 "The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies." xsd:string property_value: IAO:0000112 "The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used." xsd:string property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000116 "This relation acts as a join point with BSPO" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: RO:0001900 RO:0001901 domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant is_a: RO:0002163 ! spatially disjoint from [Typedef] id: RO:0002221 name: surrounds def: "inverse of surrounded by" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: RO:0001900 RO:0001901 is_a: RO:0002220 ! adjacent to [Typedef] id: RO:0002222 name: temporally related to comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 https://en.wikipedia.org/wiki/Allen%27s_interval_algebra property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent [Typedef] id: RO:0002223 name: starts def: "inverse of starts with" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "Allen" xsd:string is_a: BFO:0000050 ! part of is_a: RO:0002222 ! temporally related to inverse_of: RO:0002224 ! starts with [Typedef] id: RO:0002224 name: starts with def: "x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] property_value: IAO:0000112 "Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor" xsd:string property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "started by" xsd:string is_transitive: true is_a: BFO:0000051 ! has part is_a: RO:0002222 ! temporally related to [Typedef] id: RO:0002225 name: develops from part of def: "x develops from part of y if and only if there exists some z such that x develops from z and z is part of y" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 holds_over_chain: RO:0002207 BFO:0000050 is_a: RO:0002202 ! develops from [Typedef] id: RO:0002226 name: develops in def: "x develops_in y if x is located in y whilst x is developing" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "EHDAA2" xsd:string property_value: IAO:0000119 "Jonathan Bard, EHDAA2" xsd:string holds_over_chain: RO:0002207 RO:0001025 is_a: RO:0002258 ! developmentally preceded by [Typedef] id: RO:0002229 name: ends def: "inverse of ends with" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: BFO:0000050 ! part of is_a: RO:0002222 ! temporally related to inverse_of: RO:0002230 ! ends with [Typedef] id: RO:0002230 name: ends with def: "x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "finished by" xsd:string is_transitive: true is_a: BFO:0000051 ! has part is_a: RO:0002222 ! temporally related to [Typedef] id: RO:0002231 name: has start location def: "x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "starts with process that occurs in" xsd:string domain: BFO:0000015 ! process range: BFO:0000004 ! independent continuant holds_over_chain: RO:0002224 BFO:0000066 is_a: RO:0002479 ! has part that occurs in [Typedef] id: RO:0002232 name: has end location def: "x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "ends with process that occurs in" xsd:string domain: BFO:0000015 ! process range: BFO:0000004 ! independent continuant holds_over_chain: RO:0002230 BFO:0000066 is_a: RO:0002479 ! has part that occurs in [Typedef] id: RO:0002233 name: has input def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "consumes" xsd:string domain: BFO:0000015 ! process holds_over_chain: RO:0002224 RO:0002233 is_a: RO:0000057 ! has participant inverse_of: RO:0002352 ! input of [Typedef] id: RO:0002234 name: has output def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p." [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "produces" xsd:string holds_over_chain: RO:0002230 RO:0002234 is_a: RO:0000057 ! has participant inverse_of: RO:0002353 ! output of [Typedef] id: RO:0002254 name: has developmental contribution from def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] property_value: IAO:0000112 "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 holds_over_chain: BFO:0000051 RO:0002202 is_a: RO:0002258 ! developmentally preceded by inverse_of: RO:0002255 ! developmentally contributes to [Typedef] id: RO:0002255 name: developmentally contributes to def: "inverse of has developmental contribution from" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 holds_over_chain: RO:0002203 BFO:0000050 is_a: RO:0002286 ! developmentally succeeded by is_a: RO:0002385 ! has potential to developmentally contribute to [Typedef] id: RO:0002256 name: developmentally induced by def: "t1 induced_by t2 if there is a process of developmental induction (GO:0031128) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor material anatomical entity type T to T', where T' develops_from T" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0001-9114-8737 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 property_value: IAO:0000118 "induced by" xsd:string property_value: IAO:0000119 " Developmental Biology, Gilbert, 8th edition, figure 6.5(F)" xsd:string property_value: IAO:0000119 "GO:0001759" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 property_value: IAO:0000232 "We place this under 'developmentally preceded by'. This placement should be examined in the context of reciprocal inductions[cjm]" xsd:string is_a: RO:0002258 ! developmentally preceded by inverse_of: RO:0002257 ! developmentally induces [Typedef] id: RO:0002257 name: developmentally induces def: "Inverse of developmentally induced by" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002286 ! developmentally succeeded by is_a: RO:0002386 ! has potential to developmentally induce [Typedef] id: RO:0002258 name: developmentally preceded by def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000116 "false" xsd:boolean property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string domain: BFO:0000002 ! continuant range: BFO:0000002 ! continuant is_a: RO:0002324 ! developmentally related to inverse_of: RO:0002286 ! developmentally succeeded by [Typedef] id: RO:0002263 name: acts upstream of def: "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." [] property_value: IAO:0000112 "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of holds_over_chain: RO:0002327 RO:0002411 is_a: RO:0002264 ! acts upstream of or within [Typedef] id: RO:0002264 name: acts upstream of or within def: "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." [] property_value: IAO:0000112 "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within holds_over_chain: RO:0002327 RO:0002418 is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002285 name: developmentally replaces def: "x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000116 "This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "replaces" xsd:string is_a: RO:0002258 ! developmentally preceded by [Typedef] id: RO:0002286 name: developmentally succeeded by def: "Inverse of developmentally preceded by" [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002384 ! has developmental potential involving [Typedef] id: RO:0002287 name: part of developmental precursor of property_value: IAO:0000112 "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue" xsd:string property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 holds_over_chain: BFO:0000050 RO:0002210 is_a: RO:0002286 ! developmentally succeeded by [Typedef] id: RO:0002304 name: causally upstream of, positive effect def: "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q." [] comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y property_value: RO:0004049 RO:0002411 is_a: RO:0002411 ! causally upstream of is_a: RO:0004047 ! causally upstream of or within, positive effect [Typedef] id: RO:0002305 name: causally upstream of, negative effect def: "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q." [] property_value: RO:0004050 RO:0002411 is_a: RO:0002411 ! causally upstream of is_a: RO:0004046 ! causally upstream of or within, negative effect [Typedef] id: RO:0002314 name: characteristic of part of def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." [] property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "inheres in part of" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 property_value: RO:0001900 RO:0001901 property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ holds_over_chain: RO:0000052 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} is_a: RO:0002502 ! depends on transitive_over: BFO:0000050 ! part of [Typedef] id: RO:0002320 name: evolutionarily related to def: "A relationship that holds via some environmental process" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution." xsd:string [Typedef] id: RO:0002323 name: mereotopologically related to def: "A mereological relationship or a topological relationship" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string property_value: RO:0001900 RO:0001901 [Typedef] id: RO:0002324 name: developmentally related to def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string [Typedef] id: RO:0002327 name: enables def: "c enables p iff c is capable of p and c acts to execute p." [] property_value: IAO:0000112 "a particular instances of akt-2 enables some instance of protein kinase activity" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "catalyzes" xsd:string property_value: IAO:0000118 "executes" xsd:string property_value: IAO:0000118 "has" xsd:string property_value: IAO:0000118 "is catalyzing" xsd:string property_value: IAO:0000118 "is executing" xsd:string property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string is_a: RO:0002215 ! capable of inverse_of: RO:0002333 ! enabled by transitive_over: BFO:0000051 ! has part transitive_over: RO:0002017 ! has component activity [Typedef] id: RO:0002328 name: functionally related to def: "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string [Typedef] id: RO:0002329 name: part of structure that is capable of def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "false" xsd:boolean holds_over_chain: BFO:0000050 RO:0002215 {http://purl.obolibrary.org/obo/RO_0002581="true"} is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002331 name: involved in def: "c involved_in p if and only if c enables some process p', and p' is part of p" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "actively involved in" xsd:string property_value: IAO:0000118 "enables part of" xsd:string property_value: seeAlso Involved:in holds_over_chain: RO:0002327 BFO:0000050 is_a: RO:0000056 ! participates in is_a: RO:0002431 ! involved in or involved in regulation of transitive_over: BFO:0000050 ! part of [Typedef] id: RO:0002333 name: enabled by def: "inverse of enables" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0000057 ! has participant is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002334 name: regulated by def: "inverse of regulates" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000589 "regulated by (processual)" xsd:string domain: BFO:0000015 ! process range: BFO:0000015 ! process is_transitive: true is_a: RO:0002427 ! causally downstream of or within [Typedef] id: RO:0002335 name: negatively regulated by def: "inverse of negatively regulates" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002336 name: positively regulated by def: "inverse of positively regulates" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002350 name: member of def: "is member of is a mereological relation between a item and a collection." [] property_value: IAO:0000112 "An organism that is a member of a population of organisms" xsd:string property_value: IAO:0000118 "is member of" xsd:string property_value: IAO:0000118 "member part of" xsd:string property_value: IAO:0000119 "SIO" xsd:string property_value: RO:0001900 RO:0001901 is_a: BFO:0000050 ! part of inverse_of: RO:0002351 ! has member [Typedef] id: RO:0002351 name: has member def: "has member is a mereological relation between a collection and an item." [] property_value: IAO:0000119 "SIO" xsd:string property_value: RO:0001900 RO:0001901 is_a: BFO:0000051 ! has part [Typedef] id: RO:0002352 name: input of def: "inverse of has input" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0000056 ! participates in is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002353 name: output of def: "inverse of has output" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0000056 ! participates in is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002371 name: attached to def: "a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000589 "attached to (anatomical structure to anatomical structure)" xsd:string is_symmetric: true is_a: RO:0002170 ! connected to is_a: RO:0002177 ! attached to part of [Typedef] id: RO:0002372 name: has muscle origin def: "m has_muscle_origin s iff m is attached_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "Wikipedia:Insertion_(anatomy)" xsd:string property_value: seeAlso http://dbpedia.org/property/origin is_a: RO:0002371 ! attached to is_a: RO:0002567 ! biomechanically related to [Typedef] id: RO:0002373 name: has muscle insertion def: "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "Wikipedia:Insertion_(anatomy)" xsd:string property_value: seeAlso http://dbpedia.org/property/insertion is_a: RO:0002371 ! attached to is_a: RO:0002567 ! biomechanically related to [Typedef] id: RO:0002375 name: in branching relationship with def: "A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network." [] property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships" xsd:string property_value: IAO:0000232 "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)" xsd:string property_value: RO:0004036 BFO:0000050 property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/branching_part_of.png property_value: seeAlso "https://github.com/obophenotype/uberon/issues/170" xsd:anyURI domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002323 ! mereotopologically related to [Typedef] id: RO:0002376 name: tributary of def: "x tributary_of y if and only if x a channel for the flow of a substance into y, where y is larger than x. If x and y are hydrographic features, then y is the main stem of a river, or a lake or bay, but not the sea or ocean. If x and y are anatomical, then y is a vein." [] property_value: IAO:0000112 "Deschutes River tributary_of Columbia River" xsd:string property_value: IAO:0000112 "inferior epigastric vein tributary_of external iliac vein" xsd:string property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "drains into" xsd:string property_value: IAO:0000118 "drains to" xsd:string property_value: IAO:0000118 "tributary channel of" xsd:string property_value: IAO:0000119 "http://en.wikipedia.org/wiki/Tributary" xsd:string property_value: IAO:0000119 "http://www.medindia.net/glossary/venous_tributary.htm" xsd:string property_value: IAO:0000232 "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (veins, arteries)" xsd:anyURI property_value: seeAlso http://dbpedia.org/ontology/drainsTo property_value: seeAlso "http://en.wikipedia.org/wiki/Tributary" xsd:anyURI is_a: RO:0002170 ! connected to is_a: RO:0002375 ! in branching relationship with [Typedef] id: RO:0002379 name: spatially coextensive with def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] property_value: IAO:0000112 "A lump of clay and a statue" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string is_a: RO:0002131 ! overlaps [Typedef] id: RO:0002380 name: branching part of def: "x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y" [] property_value: IAO:0000112 "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is a (direct) branching part of T. B1-1, B1-2, and B1-3 are also branching parts of T, but these are considered indirect branching parts as they do not directly connect to the main stem S" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: seeAlso "FMA:85994" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/issues/2212 is_a: BFO:0000050 ! part of is_a: RO:0002375 ! in branching relationship with inverse_of: RO:0002569 ! has branching part [Typedef] id: RO:0002384 name: has developmental potential involving def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002324 ! developmentally related to [Typedef] id: RO:0002385 name: has potential to developmentally contribute to def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002384 ! has developmental potential involving [Typedef] id: RO:0002386 name: has potential to developmentally induce def: "x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y" [] property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002384 ! has developmental potential involving [Typedef] id: RO:0002387 name: has potential to develop into def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002384 ! has developmental potential involving [Typedef] id: RO:0002388 name: has potential to directly develop into def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002387 ! has potential to develop into [Typedef] id: RO:0002404 name: causally downstream of def: "inverse of upstream of" [] property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: BFO:0000062 ! preceded by is_a: RO:0002427 ! causally downstream of or within inverse_of: RO:0002411 ! causally upstream of [Typedef] id: RO:0002405 name: immediately causally downstream of property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002087 ! immediately preceded by is_a: RO:0002404 ! causally downstream of inverse_of: RO:0002412 ! immediately causally upstream of [Typedef] id: RO:0002407 name: indirectly positively regulates def: "p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "indirectly activates" xsd:string property_value: RO:0002579 RO:0002213 holds_over_chain: RO:0002409 RO:0002409 holds_over_chain: RO:0002629 RO:0002407 holds_over_chain: RO:0002629 RO:0002629 is_transitive: true is_a: RO:0002213 ! positively regulates is_a: RO:0012012 ! indirectly regulates transitive_over: RO:0002629 ! directly positively regulates [Typedef] id: RO:0002409 name: indirectly negatively regulates def: "p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "indirectly inhibits" xsd:string property_value: RO:0002579 RO:0002212 holds_over_chain: RO:0002630 RO:0002409 holds_over_chain: RO:0002630 RO:0002630 is_transitive: true is_a: RO:0002212 ! negatively regulates is_a: RO:0012012 ! indirectly regulates transitive_over: RO:0002630 ! directly negatively regulates [Typedef] id: RO:0002410 name: causally related to property_value: IAO:0000116 "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative?\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string [Typedef] id: RO:0002411 name: causally upstream of def: "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_transitive: true is_a: BFO:0000063 ! precedes is_a: RO:0002418 ! causally upstream of or within [Typedef] id: RO:0002412 name: immediately causally upstream of def: "p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: RO:0002575 RO:0002411 is_a: RO:0002090 ! immediately precedes is_a: RO:0002411 ! causally upstream of [Typedef] id: RO:0002418 name: causally upstream of or within def: "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." [] property_value: IAO:0000116 "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "influences (processual)" xsd:string is_transitive: true is_a: RO:0002501 ! causal relation between processes inverse_of: RO:0002427 ! causally downstream of or within [Typedef] id: RO:0002427 name: causally downstream of or within def: "inverse of causally upstream of or within" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_transitive: true is_a: RO:0002501 ! causal relation between processes [Typedef] id: RO:0002428 name: involved in regulation of def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 holds_over_chain: RO:0002327 RO:0002211 holds_over_chain: RO:0002331 RO:0002211 is_a: RO:0002263 ! acts upstream of is_a: RO:0002431 ! involved in or involved in regulation of [Typedef] id: RO:0002429 name: involved in positive regulation of def: "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: RO:0004049 RO:0002428 holds_over_chain: RO:0002327 RO:0002213 holds_over_chain: RO:0002331 RO:0002213 is_a: RO:0002428 ! involved in regulation of [Typedef] id: RO:0002430 name: involved in negative regulation of def: "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: RO:0004050 RO:0002428 holds_over_chain: RO:0002327 RO:0002212 holds_over_chain: RO:0002331 RO:0002212 is_a: RO:0002428 ! involved in regulation of [Typedef] id: RO:0002431 name: involved in or involved in regulation of def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] property_value: IAO:0000116 "OWL does not allow defining object properties via a Union" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "involved in or reguates" xsd:string is_a: RO:0002264 ! acts upstream of or within is_a: RO:0002328 ! functionally related to is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002432 name: is active in property_value: IAO:0000112 "A protein that enables activity in a cytosol." xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "executes activity in" xsd:string holds_over_chain: RO:0002327 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} is_a: RO:0002131 ! overlaps is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002433 name: contributes to morphology of def: "p contributes to morphology of w if and only if a change in the morphology of p entails a change in the morphology of w. Examples: every skull contributes to morphology of the head which it is a part of. Counter-example: nuclei do not generally contribute to the morphology of the cell they are part of, as they are buffered by cytoplasm." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002131 ! overlaps [Typedef] id: RO:0002434 name: interacts with def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] property_value: closeMatch "http://purl.obolibrary.org/obo/MI_0914" xsd:anyURI property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string property_value: seeAlso "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" xsd:anyURI domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_symmetric: true [Typedef] id: RO:0002436 name: molecularly interacts with def: "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." [] property_value: closeMatch "http://purl.obolibrary.org/obo/MI_0915" xsd:anyURI property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "binds" xsd:string property_value: IAO:0000118 "molecularly binds with" xsd:string property_value: seeAlso ECO:0000353 is_symmetric: true is_a: RO:0002434 ! interacts with [Typedef] id: RO:0002447 name: phosphorylates property_value: IAO:0000116 "Axiomatization to GO to be added later" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." xsd:string is_a: RO:0002436 ! molecularly interacts with [Typedef] id: RO:0002448 name: directly regulates activity of def: "The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.\n\nA and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000117 https://orcid.org/0000-0003-4639-4431 domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002436 ! molecularly interacts with is_a: RO:0011002 ! regulates activity of [Typedef] id: RO:0002449 name: directly negatively regulates activity of def: "The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. \nFor example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000117 https://orcid.org/0000-0003-4639-4431 property_value: IAO:0000118 "directly inhibits" xsd:string domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002448 ! directly regulates activity of [Typedef] id: RO:0002450 name: directly positively regulates activity of def: "The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. \nFor example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000117 https://orcid.org/0000-0003-4639-4431 property_value: IAO:0000118 "directly activates" xsd:string domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002448 ! directly regulates activity of [Typedef] id: RO:0002464 name: helper property (not for use in curation) property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." xsd:string [Typedef] id: RO:0002473 name: composed primarily of def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 property_value: RO:0001900 RO:0001901 domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: BFO:0000051 ! has part [Typedef] id: RO:0002479 name: has part that occurs in def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 domain: BFO:0000003 ! occurrent range: BFO:0000004 ! independent continuant holds_over_chain: BFO:0000051 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} [Typedef] id: RO:0002481 name: is kinase activity property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002564 ! molecular interaction relation helper property [Typedef] id: RO:0002487 name: relation between physical entity and a process or stage property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage." xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000003 ! occurrent [Typedef] id: RO:0002488 name: existence starts during def: "x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y)." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002490 ! existence overlaps is_a: RO:0002496 ! existence starts during or after transitive_over: BFO:0000050 ! part of [Typedef] id: RO:0002489 name: existence starts with def: "x starts ends with y if and only if the time point at which x starts is equivalent to the time point at which y starts. Formally: x existence starts with y iff α(x) = α(y)." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002488 ! existence starts during [Typedef] id: RO:0002490 name: existence overlaps def: "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))" [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002487 ! relation between physical entity and a process or stage [Typedef] id: RO:0002491 name: existence starts and ends during def: "x exists during y if and only if: 1) the time point at which x begins to exist is after or equal to the time point at which y begins and 2) the time point at which x ceases to exist is before or equal to the point at which y ends. Formally: x existence starts and ends during y iff α(x) >= α(y) & α(x) <= ω(y) & ω(x) <= ω(y) & ω(x) >= α(y)" [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002488 ! existence starts during is_a: RO:0002492 ! existence ends during [Typedef] id: RO:0002492 name: existence ends during def: "x existence ends during y if and only if the time point at which x ends is before or equivalent to the time point at which y ends and after or equivalent to the point at which y starts. Formally: x existence ends during y iff ω(x) <= ω(y) and ω(x) >= α(y)." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002490 ! existence overlaps is_a: RO:0002497 ! existence ends during or before transitive_over: BFO:0000050 ! part of [Typedef] id: RO:0002493 name: existence ends with def: "x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y)." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002492 ! existence ends during [Typedef] id: RO:0002494 name: transformation of def: "x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_transitive: true is_a: RO:0002202 ! develops from [Typedef] id: RO:0002495 name: immediate transformation of def: "x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: RO:0002575 RO:0002494 is_a: RO:0002207 ! directly develops from is_a: RO:0002494 ! transformation of [Typedef] id: RO:0002496 name: existence starts during or after def: "x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y)." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 holds_over_chain: BFO:0000050 RO:0002496 holds_over_chain: RO:0002258 RO:0002496 is_a: RO:0002487 ! relation between physical entity and a process or stage transitive_over: BFO:0000050 ! part of transitive_over: BFO:0000062 ! preceded by transitive_over: RO:0002082 ! simultaneous with [Typedef] id: RO:0002497 name: existence ends during or before def: "x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 holds_over_chain: BFO:0000050 RO:0002497 holds_over_chain: RO:0002286 RO:0002497 is_a: RO:0002487 ! relation between physical entity and a process or stage transitive_over: BFO:0000050 ! part of transitive_over: BFO:0000063 ! precedes transitive_over: RO:0002082 ! simultaneous with [Typedef] id: RO:0002500 name: causal agent in process def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_a: RO:0002595 ! causal relation between material entity and a process inverse_of: RO:0002608 ! process has causal agent [Typedef] id: RO:0002501 name: causal relation between processes def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002502 name: depends on property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: seeAlso BFO:0000169 [Typedef] id: RO:0002503 name: towards def: "q towards e2 if and only if q is a relational quality such that q inheres-in some e, and e != e2 and q is dependent on e2" [] property_value: IAO:0000116 "This relation is provided in order to support the use of relational qualities such as 'concentration of'; for example, the concentration of C in V is a quality that inheres in V, but pertains to C." xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 is_a: RO:0002502 ! depends on [Typedef] id: RO:0002506 name: causal relation between entities property_value: IAO:0000116 "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000002 ! continuant range: BFO:0000002 ! continuant is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002551 name: has skeleton def: "A relation between a segment or subdivision of an organism and the maximal subdivision of material entities that provides structural support for that segment or subdivision." [] property_value: IAO:0000112 "Forelimb SubClassOf has_skeleton some 'Forelimb skeleton'" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000118 "has supporting framework" xsd:string property_value: IAO:0000232 "The skeleton of a structure may be a true skeleton (for example, the bony skeleton of a hand) or any kind of support framework (the hydrostatic skeleton of a sea star, the exoskeleton of an insect, the cytoskeleton of a cell)." xsd:string is_a: BFO:0000051 ! has part inverse_of: RO:0002576 ! skeleton of is_asymmetric: true [Typedef] id: RO:0002559 name: causally influenced by property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "causally influenced by (entity-centric)" xsd:string is_a: RO:0002506 ! causal relation between entities inverse_of: RO:0002566 ! causally influences [Typedef] id: RO:0002563 name: interaction relation helper property property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 property_value: seeAlso "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" xsd:anyURI is_a: RO:0002464 ! helper property (not for use in curation) [Typedef] id: RO:0002564 name: molecular interaction relation helper property property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: RO:0002563 ! interaction relation helper property [Typedef] id: RO:0002566 name: causally influences def: "The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size)." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000117 https://orcid.org/0000-0003-4639-4431 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "causally influences (entity-centric)" xsd:string domain: BFO:0000002 ! continuant range: BFO:0000002 ! continuant is_a: RO:0002506 ! causal relation between entities [Typedef] id: RO:0002567 name: biomechanically related to def: "A relation that holds between elements of a musculoskeletal system or its analogs." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes." xsd:string is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002568 name: has muscle antagonist def: "m1 has_muscle_antagonist m2 iff m1 has_muscle_insertion s, m2 has_muscle_insection s, m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "Wikipedia:Antagonist_(muscle)" xsd:string is_a: RO:0002567 ! biomechanically related to [Typedef] id: RO:0002569 name: has branching part def: "inverse of branching part of" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_transitive: true is_a: BFO:0000051 ! has part is_a: RO:0002375 ! in branching relationship with [Typedef] id: RO:0002570 name: conduit for def: "x is a conduit for y iff y overlaps through the lumen_of of x, and y has parts on either side of the lumen of x." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "UBERON:cjm" xsd:string property_value: IAO:0000232 "This relation holds between a thing with a 'conduit' (e.g. a bone foramen) and a 'conduee' (for example, a nerve) such that at the time the relationship holds, the conduee has two ends sticking out either end of the conduit. It should therefore note be used for objects that move through the conduit but whose spatial extent does not span the passage. For example, it would not be used for a mountain that contains a long tunnel through which trains pass. Nor would we use it for a digestive tract and objects such as food that pass through." xsd:string domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002131 ! overlaps [Typedef] id: RO:0002571 name: lumen of def: "x lumen_of y iff x is the space or substance that is part of y and does not cross any of the inner membranes or boundaries of y that is maximal with respect to the volume of the convex hull." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 "GOC:cjm" xsd:string range: BFO:0000040 ! material entity is_a: BFO:0000050 ! part of [Typedef] id: RO:0002572 name: luminal space of def: "s is luminal space of x iff s is lumen_of x and s is an immaterial entity" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 domain: BFO:0000141 ! immaterial entity is_a: RO:0002571 ! lumen of [Typedef] id: RO:0002576 name: skeleton of def: "inverse of has skeleton" [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 is_a: BFO:0000050 ! part of [Typedef] id: RO:0002578 name: directly regulates def: "p directly regulates q iff p is immediately causally upstream of q and p regulates q." [] property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "directly regulates (processual)" xsd:string property_value: RO:0002575 RO:0002211 is_a: RO:0002211 ! regulates is_a: RO:0002412 ! immediately causally upstream of [Typedef] id: RO:0002584 name: has part structure that is capable of def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] property_value: IAO:0000112 "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 holds_over_chain: BFO:0000051 RO:0002215 is_a: RO:0002328 ! functionally related to is_a: RO:0002595 ! causal relation between material entity and a process [Typedef] id: RO:0002595 name: causal relation between material entity and a process def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] property_value: IAO:0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165 property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations domain: BFO:0000040 ! material entity range: BFO:0000015 ! process is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002596 name: capable of regulating def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] property_value: IAO:0000112 "pyrethroid -> growth" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002211 is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002597 name: capable of negatively regulating def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002212 is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002598 name: capable of positively regulating def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] property_value: IAO:0000112 "renin -> arteriolar smooth muscle contraction" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002213 is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002608 name: process has causal agent def: "Inverse of 'causal agent in process'" [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002629 name: directly positively regulates def: "p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q." [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "directly positively regulates (process to process)" xsd:string property_value: RO:0004049 RO:0002578 is_a: RO:0002213 ! positively regulates is_a: RO:0002578 ! directly regulates [Typedef] id: RO:0002630 name: directly negatively regulates def: "p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q." [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "directly negatively regulates (process to process)" xsd:string property_value: RO:0004050 RO:0002578 is_a: RO:0002212 ! negatively regulates is_a: RO:0002578 ! directly regulates [Typedef] id: RO:0003000 name: produces def: "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." [] comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0001-9114-8737 domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity inverse_of: RO:0003001 ! produced by [Typedef] id: RO:0003001 name: produced by def: "a produced_by b iff some process that occurs_in b has_output a." [] property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 https://orcid.org/0000-0001-9114-8737 domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity [Typedef] id: RO:0004031 name: enables subfunction def: "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." [] holds_over_chain: RO:0002327 BFO:0000051 is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0004032 name: acts upstream of or within, positive effect property_value: RO:0004049 RO:0002264 property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect holds_over_chain: RO:0002327 RO:0004047 is_a: RO:0002264 ! acts upstream of or within [Typedef] id: RO:0004033 name: acts upstream of or within, negative effect property_value: RO:0004050 RO:0002264 holds_over_chain: RO:0002327 RO:0004046 is_a: RO:0002264 ! acts upstream of or within [Typedef] id: RO:0004034 name: acts upstream of, positive effect def: "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive" [] property_value: RO:0004049 RO:0002263 property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect holds_over_chain: RO:0002327 RO:0002304 is_a: RO:0002263 ! acts upstream of is_a: RO:0004032 ! acts upstream of or within, positive effect [Typedef] id: RO:0004035 name: acts upstream of, negative effect def: "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative" [] property_value: RO:0004050 RO:0002263 property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect holds_over_chain: RO:0002327 RO:0002305 is_a: RO:0002263 ! acts upstream of is_a: RO:0004033 ! acts upstream of or within, negative effect [Typedef] id: RO:0004046 name: causally upstream of or within, negative effect property_value: RO:0004050 RO:0002418 is_a: RO:0002418 ! causally upstream of or within [Typedef] id: RO:0004047 name: causally upstream of or within, positive effect property_value: RO:0004049 RO:0002418 is_a: RO:0002418 ! causally upstream of or within [Typedef] id: RO:0011002 name: regulates activity of def: "The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B." [] property_value: IAO:0000117 https://orcid.org/0000-0003-4639-4431 domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002566 ! causally influences [Typedef] id: RO:0012011 name: indirectly causally upstream of def: "p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q." [] is_a: RO:0002411 ! causally upstream of [Typedef] id: RO:0012012 name: indirectly regulates def: "p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q." [] is_a: RO:0002211 ! regulates is_a: RO:0012011 ! indirectly causally upstream of [Typedef] id: RO:0015006 name: different in magnitude relative to domain: PATO:0000001 ! characteristic range: PATO:0000001 ! characteristic [Typedef] id: RO:0015007 name: increased in magnitude relative to comment: This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. domain: PATO:0000001 ! characteristic range: PATO:0000001 ! characteristic is_a: RO:0015006 ! different in magnitude relative to [Typedef] id: RO:0015008 name: decreased in magnitude relative to comment: This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. domain: PATO:0000001 ! characteristic range: PATO:0000001 ! characteristic is_a: RO:0015006 ! different in magnitude relative to [Typedef] id: RO:0015011 name: has cross section comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. [Typedef] id: RO:0015012 name: reciprocal of comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. [Typedef] id: RO:0017001 name: device utilizes material def: "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y." [] property_value: IAO:0000112 "A diagnostic testing device utilizes a specimen." xsd:string property_value: IAO:0000117 https://orcid.org/0000-0001-9625-1899 property_value: IAO:0000117 https://orcid.org/0000-0003-2620-0345 property_value: IAO:0000232 "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." xsd:string property_value: IAO:0000232 "See github ticket https://github.com/oborel/obo-relations/issues/497" xsd:string holds_over_chain: RO:0002215 RO:0002233 [Typedef] id: RO:0019000 name: regulates characteristic def: "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." [] domain: BFO:0000015 ! process range: PATO:0000001 ! characteristic holds_over_chain: RO:0002211 RO:0019000 is_a: RO:0002410 ! causally related to [Typedef] id: RO:0019001 name: positively regulates characteristic def: "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C." [] holds_over_chain: RO:0002213 RO:0019001 is_a: RO:0019000 ! regulates characteristic [Typedef] id: RO:0019002 name: negatively regulates characteristic def: "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C." [] holds_over_chain: RO:0002212 RO:0019001 holds_over_chain: RO:0002213 RO:0019002 is_a: RO:0019000 ! regulates characteristic [Typedef] id: by_means name: by_means [Typedef] id: has-input name: has-input [Typedef] id: has_participant name: has_participant [Typedef] id: in_response_to name: in_response_to [Typedef] id: is_about name: is_about [Typedef] id: qualifier name: qualifier